CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_005956	Bartonella henselae str. Houston-1, complete genome	0 crisprs	cas3,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

338115 : 429429

Haemophilus_phage(13.46%)

head,plate,tail,portal,tRNA,integrase,capsid,terminase

attL 371268:371286|attR 426110:426128

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011180208.1\|338115_341031_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	8.8e-63	24.8
WP_011180209.1\|341226_341820_+	hypothetical protein	NA	NA	NA	NA
WP_011180210.1\|341882_342329_-	nucleoside deaminase	NA	NA	NA	NA
WP_011180211.1\|342604_344002_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_011180212.1\|343982_344552_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_011180213.1\|347406_348738_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_034447481.1\|348724_349528_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_011180215.1\|349573_349819_+	DUF4170 domain-containing protein	K4JVU0	Caulobacter_phage	2.0e-05	37.9
WP_011180216.1\|350642_351965_+	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_011180217.1\|351954_352974_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_011180218.1\|353018_353255_-	DUF2093 domain-containing protein	NA	NA	NA	NA
WP_011180219.1\|353375_355214_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	7.1e-111	39.9
WP_011180220.1\|355511_356600_+	2'-deoxycytidine 5'-triphosphate deaminase	NA	NA	NA	NA
WP_011180221.1\|357435_358587_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA
WP_011180223.1\|361074_361395_-	hypothetical protein	NA	NA	NA	NA
WP_011180224.1\|361575_363003_+	amino acid permease	NA	NA	NA	NA
WP_011180225.1\|363044_363725_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.9e-15	27.9
WP_011180226.1\|363721_364360_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_011180227.1\|364373_364928_+	biotin transporter BioY	NA	NA	NA	NA
WP_038525120.1\|368963_369407_+	hypothetical protein	NA	NA	NA	NA
WP_034447472.1\|370096_370324_+	hypothetical protein	NA	NA	NA	NA
WP_034447468.1\|370455_370674_+	hypothetical protein	NA	NA	NA	NA
371268:371286	attL	NA	NA	NA	NA
WP_011180232.1\|371484_372642_+\|integrase	site-specific integrase	A0A1X9HVL9	Ruegeria_phage	8.0e-76	40.8
WP_011180234.1\|372913_373504_+	antA/AntB antirepressor family protein	Q7Y5W2	Haemophilus_phage	6.2e-24	49.6
WP_011180235.1\|373623_373899_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_011180236.1\|373911_374202_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_034447463.1\|374324_374537_-	hypothetical protein	NA	NA	NA	NA
WP_011180238.1\|374665_374893_-	hypothetical protein	NA	NA	NA	NA
WP_011180239.1\|374889_375552_-	glycoside hydrolase family protein	A0A141GEY9	Brucella_phage	2.6e-47	61.5
WP_011180240.1\|375711_376014_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	5.4e-16	45.8
WP_011180241.1\|376000_376321_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	3.3e-16	46.2
WP_011180242.1\|376364_376643_-	hypothetical protein	NA	NA	NA	NA
WP_011180243.1\|376639_377371_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.4e-46	40.7
WP_011180244.1\|377622_378195_-	antA/AntB antirepressor family protein	Q7Y5W2	Haemophilus_phage	8.9e-28	40.7
WP_011180245.1\|378222_378771_-	phage antirepressor Ant	A0A0N6WET9	Escherichia_phage	5.9e-21	52.6
WP_011180246.1\|379082_380390_-	phage late control protein	K4HZC6	Acidithiobacillus_phage	1.6e-69	39.8
WP_011180247.1\|380386_380611_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	8.3e-06	53.1
WP_011180248.1\|380607_380988_-\|tail	phage tail protein	D5LGY3	Escherichia_phage	5.7e-23	43.1
WP_011180249.1\|380993_383294_-\|tail	tail protein	A0A0E3U2N9	Fusobacterium_phage	5.4e-15	26.7
WP_075320635.1\|383290_383407_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_011180250.1\|383403_383688_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_011180251.1\|383689_384196_-\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	2.6e-31	42.2
WP_011180252.1\|384195_385428_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A088FVH5	Escherichia_phage	1.9e-128	52.2
WP_011180253.1\|385897_386419_+	Rha family transcriptional regulator	A0A159B6D5	Gordonia_phage	3.8e-25	57.1
WP_011180254.1\|386464_386794_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_011180255.1\|386881_387061_+	hypothetical protein	A0A222YXG1	Escherichia_phage	4.3e-13	62.5
WP_011180256.1\|387356_388682_-	hypothetical protein	NA	NA	NA	NA
WP_011180257.1\|388696_391840_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	6.2e-155	34.9
WP_011180258.1\|391841_392948_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	5.0e-19	36.4
WP_011180259.1\|392947_393775_-\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	1.7e-40	34.9
WP_011180260.1\|393771_394101_-	GPW/gp25 family protein	Q75QM0	Wolbachia_phage	4.9e-31	59.3
WP_011180261.1\|394109_394799_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	4.1e-19	34.5
WP_011180262.1\|394779_395322_-	hypothetical protein	NA	NA	NA	NA
WP_011180263.1\|395373_395646_+	toxin HicA	A0A2P1A0R7	Gordonia_phage	1.0e-05	60.0
WP_004856761.1\|395635_395953_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_011180264.1\|396193_396472_-	hypothetical protein	NA	NA	NA	NA
WP_011180265.1\|396468_397227_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	1.7e-42	38.3
WP_011180266.1\|397245_397800_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	2.4e-22	56.2
WP_011180267.1\|398184_399258_+	hypothetical protein	NA	NA	NA	NA
WP_011180268.1\|399293_399647_-	hypothetical protein	NA	NA	NA	NA
WP_011180269.1\|399648_400725_-\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	3.8e-56	35.2
WP_011180270.1\|400737_401106_-\|head	head decoration protein	A0A0A8IL52	Aurantimonas_phage	5.7e-12	46.1
WP_049784565.1\|401102_401423_-	hypothetical protein	NA	NA	NA	NA
WP_034454126.1\|401365_402409_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	8.3e-64	46.6
WP_011180273.1\|402398_403955_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	3.5e-74	35.5
WP_011180274.1\|403954_404203_-	hypothetical protein	NA	NA	NA	NA
WP_011180275.1\|404206_406135_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	1.8e-165	52.4
WP_011180276.1\|406127_406709_-	hypothetical protein	NA	NA	NA	NA
WP_011180277.1\|406771_407086_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	1.6e-10	39.8
WP_011180278.1\|407102_407399_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	6.4e-14	49.4
WP_011180280.1\|407808_408072_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_011180281.1\|408058_408340_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_011180242.1\|408382_408661_-	hypothetical protein	NA	NA	NA	NA
WP_011180282.1\|408657_409416_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	3.0e-47	40.7
WP_011180283.1\|409475_409991_-	phage antirepressor Ant	Q7Y5W2	Haemophilus_phage	7.8e-23	55.6
WP_011180285.1\|410878_411421_-	phage antirepressor Ant	A0A0P0ZG08	Escherichia_phage	1.6e-18	46.9
WP_011180287.1\|412017_412596_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	3.8e-10	35.0
WP_011180288.1\|412599_412920_-	hypothetical protein	NA	NA	NA	NA
WP_011180290.1\|413392_413788_-	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	1.7e-06	31.1
WP_011180293.1\|414598_415045_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	6.7e-31	55.7
WP_034447441.1\|415536_415830_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.0e-12	46.6
WP_038525124.1\|416363_416783_-	hypothetical protein	NA	NA	NA	NA
WP_011180297.1\|416775_417888_-	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	1.6e-12	51.5
WP_011180298.1\|417877_418225_-	DUF1376 domain-containing protein	A0A076GD06	Sinorhizobium_phage	1.6e-16	44.1
WP_011180299.1\|418217_418694_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	3.7e-51	63.8
WP_011180300.1\|418821_419598_+	hypothetical protein	NA	NA	NA	NA
WP_099358257.1\|419606_419972_-	hypothetical protein	NA	NA	NA	NA
WP_034447428.1\|420071_420431_-	hypothetical protein	NA	NA	NA	NA
WP_011180303.1\|420514_421132_+	transcriptional regulator	K7PH71	Enterobacterial_phage	1.4e-05	27.1
WP_011180304.1\|421373_421748_+	hypothetical protein	NA	NA	NA	NA
WP_011180305.1\|421812_422205_+	Rha family transcriptional regulator	B5AX29	Iodobacteriophage	2.5e-21	49.5
WP_011180308.1\|422986_423370_+	hypothetical protein	K4Q356	Edwardsiella_phage	1.0e-11	57.9
WP_011180311.1\|423811_424591_+	ERF family protein	K4NWX3	Pseudomonas_phage	2.4e-15	31.5
WP_011180312.1\|424592_425216_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	1.9e-44	45.1
WP_011180313.1\|425244_425736_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	3.5e-33	42.4
WP_011180314.1\|425808_426012_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011180315.1\|426587_427751_+	phosphoserine transaminase	NA	NA	NA	NA
426110:426128	attR	NA	NA	NA	NA
WP_011180316.1\|428139_429429_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	4.3e-54	31.8

DBSCAN-SWA_2

805806 : 814886

Mannheimia_phage(22.22%)

integrase

attL 802190:802202|attR 808021:808033

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
802190:802202	attL	NA	NA	NA	NA
WP_011180600.1\|805806_806088_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.1e-15	45.1
WP_011180601.1\|806106_806406_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	2.8e-17	47.7
WP_011180602.1\|806462_807500_-\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	4.1e-31	30.3
WP_034448587.1\|807502_807751_-	hypothetical protein	NA	NA	NA	NA
WP_011180604.1\|807861_808485_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	7.4e-44	43.6
808021:808033	attR	NA	NA	NA	NA
WP_011180311.1\|808486_809266_-	ERF family protein	K4NWX3	Pseudomonas_phage	2.4e-15	31.5
WP_011180308.1\|809707_810091_-	hypothetical protein	K4Q356	Edwardsiella_phage	1.0e-11	57.9
WP_011180605.1\|810103_810835_-	phage regulatory protein/antirepressor Ant	B5AX29	Iodobacteriophage	5.1e-28	41.3
WP_011180606.1\|810849_811206_-	antA/AntB antirepressor family protein	NA	NA	NA	NA
WP_011180607.1\|811269_811644_-	hypothetical protein	NA	NA	NA	NA
WP_099358259.1\|811882_812152_-	hypothetical protein	NA	NA	NA	NA
WP_011180610.1\|812670_813030_+	hypothetical protein	NA	NA	NA	NA
WP_011180611.1\|813166_813646_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.4e-50	64.0
WP_011180612.1\|813635_814886_+	DUF1376 domain-containing protein	A0A218M9P5	Mycobacterium_phage	5.5e-14	52.9

DBSCAN-SWA_3

1116639 : 1127364

uncultured_Mediterranean_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011180873.1\|1116639_1117758_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.0e-96	52.1
WP_011180874.1\|1118921_1119434_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-47	59.6
WP_011180875.1\|1119456_1120029_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-43	54.7
WP_034448154.1\|1120018_1120537_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	7.1e-24	37.0
WP_011180877.1\|1120561_1123357_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	7.0e-102	33.7
WP_011180878.1\|1123589_1124108_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.1e-45	59.3
WP_011180879.1\|1124448_1127364_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	60.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage