CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_006369	Legionella pneumophila str. Lens, complete genome	3 crisprs	RT,csa3,DEDDh,DinG,cas3,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	0	31	5	0
NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	1 crisprs	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	0	53	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_006369_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006369_1

2608194-2608360

Orphan

Consensus_repeat	Method
AAATTTACCGCGATAACAGTAATTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_006369_1

>merge|NC_006369|1|2608194-2608360|CRISPRCasFinder
AAATTTACCGCGATAACAGTAATTTTTAGGAATTTATAATAAATAAATATGGGAAAATCAGGAAATCAATTAAATTTACCGCCATAACAGTAATTTATGGTGAATTAATGCAAGGAAATGCAATAATAAATTTATTTTTATCATTTTTACTGCTATAACAGTAATAT

>NC_006369|1|1|2608194-2608360|CRISPRCasFinder
AAATTTACCGCGATAACAGTAATTT	TTAGGAATTTATAATAAATAAATATGGGAAAATCAGGAAATCAATT
AAATTTACCGCCATAACAGTAATTT	ATGGTGAATTAATGCAAGGAAATGCAATAATAAATTTATTTTTATC
ATTTTTACTGCTATAACAGTAATAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_006369.1\|WP_011216259.1\|2608910_2609849_+\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NC_006369.1\|WP_011216248.1\|2596496_2597330_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_006369.1\|WP_011216246.1\|2593574_2594702_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NC_006369.1\|WP_011216252.1\|2601677_2603543_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NC_006369.1\|WP_011216258.1\|2608605_2608914_+\|HipA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274416
NC_006369.1\|WP_011216261.1\|2611817_2613191_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379049
NC_006369.1\|WP_011216267.1\|2619172_2620081_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_006369.1\|WP_011216264.1\|2615809_2616448_-\|RsmD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|370496
NC_006369.1\|WP_011216262.1\|2613389_2614295_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NC_006369.1\|WP_011216251.1\|2599854_2601591_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_006369.1\|WP_011216247.1\|2594733_2596143_-\|amidase	unknown	unknown	gnl\|CDD\|223232
NC_006369.1\|WP_011216256.1\|2607283_2607952_+\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_010948064.1\|2598960_2599200_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NC_006369.1\|WP_011216250.1\|2599402_2599846_+\|lpg2359-family-Dot/Icm-T4SS-effector	unknown	unknown	gnl\|CDD\|370480
NC_006369.1\|WP_011216260.1\|2610373_2611462_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_006369.1\|WP_011216266.1\|2617352_2618807_+\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_011216263.1\|2615307_2615742_+\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_011216257.1\|2608381_2608606_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NC_006369.1\|WP_129827326.1\|2605733_2607245_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_006369.1\|WP_011216249.1\|2597754_2598756_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585

Protein	Function_ID	Function_description	E-value
NC_006369.1\|WP_011216259.1\|2608910_2609849_+\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	9.25522e-60
NC_006369.1\|WP_011216248.1\|2596496_2597330_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	2.71447e-89
NC_006369.1\|WP_129827326.1\|2605733_2607245_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.17572e-16
NC_006369.1\|WP_011216252.1\|2601677_2603543_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NC_006369.1\|WP_011216258.1\|2608605_2608914_+\|HipA-N-terminal-domain-containing-protein	gnl\|CDD\|274416	TIGR03071, couple_hipA, HipA N-terminal domain. Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.	4.82275e-45
NC_006369.1\|WP_011216261.1\|2611817_2613191_+\|ATP-binding-protein	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.22163e-29
NC_006369.1\|WP_011216264.1\|2615809_2616448_-\|RsmD-family-RNA-methyltransferase	gnl\|CDD\|370496	pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine.	3.69766e-29
NC_006369.1\|WP_011216262.1\|2613389_2614295_+\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	5.78788e-29
NC_006369.1\|WP_011216251.1\|2599854_2601591_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_006369.1\|WP_011216247.1\|2594733_2596143_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	2.41927e-116
NC_006369.1\|WP_011216267.1\|2619172_2620081_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.62318e-50
NC_006369.1\|WP_010948064.1\|2598960_2599200_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	2.18906e-16
NC_006369.1\|WP_011216250.1\|2599402_2599846_+\|lpg2359-family-Dot/Icm-T4SS-effector	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	3.2459e-60
NC_006369.1\|WP_011216260.1\|2610373_2611462_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.18165e-11
NC_006369.1\|WP_011216257.1\|2608381_2608606_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	8.54843e-24
NC_006369.1\|WP_011216246.1\|2593574_2594702_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NC_006369.1\|WP_011216249.1\|2597754_2598756_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0

>NC_006369.1|WP_011216256.1|2607283_2607952_+|hypothetical-protein
MEFAKPVKVAFGRLEHIAFIKRHLDVYKKPDITQYPIAAYEFDFLDFIYSLGLINILAFVCISLFPSYFKYDPFKIFNIIPIMLLLIVNTVLVAAVIAFFHWGLCKGLGFIYKIKTHTFYEAGIFWRVFRVLSLSYLLITIPLLIQINSIFTHEGLGRTLNLISLLTIILMLMLQIKLFILPLYKIGKQFGKALGSIQSLLVIASALLINNFFGNRYHLVFL
>NC_006369.1|WP_129827326.1|2605733_2607245_+|Fic-family-protein
MMKPSEKLAESLEVLHNLQKQGKYAIRSKDISRTHRERLVENAFLEEVVKGWYVPIKPDEQKGESTAWYASFWSFCASYLNERFGDEWCLSPEQSLLLHSENWTVPKQLMIRSPNGTNRNMELPHNTALFSVQYKMPAAQDIEIKQDMRIYAIVPALLYCSPKFFSQYPTEARSVLSMFNSASDLLHYLLEEGHSWIAGRICGALQNIGKSHIAEEIKKTMESAGYQIREEDPFLTNTPIDFSATYKPAYRSRLEVMWHDMRDTVRENFPKPRLTTIDIKKYIEQVDEKYISDAYHSLSIEGYQVSPDLIEKVRSGQWNPDATEQDRNHRSALAARGYWQAFQAVKKSLMEILNGDNPGKIIQKEHGDWYRELFQPSVAVGLLKPTDLAGYRRSPVFIRQSKHIPPRWQILSELMEEFFQLITQEKEPSVRVVLGHFFFVYIHPYSDGNGRIGRFLMNLMLASGHYPWTIIPVERRNEYMEALEQASVHQNILPFTKFIASCI
>NC_006369.1|WP_011216252.1|2601677_2603543_+|RNA-polymerase-sigma-factor-RpoD
MTMNDQDQQSSQITKVISLGKEQGYLTYSQINDLLPNIVDTEHFDVIISMLEGMNIKVFELPPSEDELALLLNTEEVPDIEEAAMVLASVDKETGRTTDPVRMYMREMGTVELLTREGEIRIAKRIEEGIYQVLKSLAHYPETVQLVLEDYDRFLAEEIRLNEIISGFADVDEEIAPATNIGSMLDEEQQEEILLDVDEEDEDGEGGISDVDDGPNPEQAKIYFDELREAFEKAMKALKEHGRTNKKTVELLDSMSESFLKLKLTSRQVDKLTRHFRQLRNHIREFERSIMRLCIEKARIPRKLFIDTFPGQETDLGWLETIISKHAKKLDLQRIEENREEILRLQSKLASFEIEYGLTISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGREATPEELAEKMELSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDNNIESPIDMATAEGLREATLEILETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLEGDEG
>NC_006369.1|WP_011216251.1|2599854_2601591_+|DNA-primase
MSGLIPQPFIDDLLNRTDLVELIDGYVPLKKRGNSHIACCPFHNEKTPSFNVVAKKQFYHCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLNLYNLMSEVSQYYQKKLKYNGQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNLEKTFPNNQRELLSTGMLIKSDEGKIYDRYRNRIMFPIHDRNGRVIGFGGRLLDKDQKPKYLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTATSTFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSLVRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQLLIDDLSRLTHIESHRLTNLITDKSESKPEVQAAISRSPLRIAIALLLQKPEIYPAAIQQINPDLLNGQEHHILLKLLQRLKDNPNANTATLIEYWRNTRYFESIIKLAAWDHNVPEPELINEFIDTVLLLQKQSNREALIEQYIKKSQQKGLTKEEQIILQNLIKERHAQAEIEK
>NC_006369.1|WP_011216250.1|2599402_2599846_+|lpg2359-family-Dot/Icm-T4SS-effector
MTIKEQINNDIKDAMRAKDKNLLNALRLISAAVKQIEVDERIEVDDERMLVILDKMSKQRKESIAQFEKASRDDLVAQEQFELNVISKYLPEPLTDNEIEELISDAIKSTGAEKMSDMGKVMAILKPKLQGRADMAQVSTRIKAKLS
>NC_006369.1|WP_010948064.1|2598960_2599200_+|30S-ribosomal-protein-S21
MPTVRVKEGENPEYALRRFKRSCEKAGILTELRRREFYEKPTAERKRKQAAAVKRHLKKISRDVSSRRGVGHRRKKSTT
>NC_006369.1|WP_011216249.1|2597754_2598756_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MLVLGIESSCDETGVAVYDSESGLLSHALHSQIATHRVHGGVVPELASRDHVNYLVPLVDEVLTKAKIRKNQLDGIAYTAGPGLIGALLVGSCFAKSLAYALNIPALAIHHLEAHLLAAKMETPSLDFPFIALLVSGGHCQLIEVNNIGEYRLLGDTLDDAVGEAFDKTAKLMGIPYPGGAVLANLADQCLSTPYQFPRPMTDRPGLDFSFSGLKTHALNTWNQSAKKQGDRSEIAKAFQQAVVETLIIKCKRAIKESQSKRLVVAGGVGANKALRSALQKWINDIKGEVYFPALEYCTDNGAMVAYAGCLRMMRGESDGGLGVMVKPRWPLA
>NC_006369.1|WP_011216248.1|2596496_2597330_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MAFFIFLILVGYLMGSINSAIIVCRTFGLPDPREEGSKNPGATNVLRLGGKQYGIMVMVFDALKGILPVILAKLLSAEPVTVAFTALAAVVGHMYPVFFHFRGGKGVATTIGALLAFHFVIGVMVAATWLLVANFWRYSSLASIASISLAPFYSLILVGNLNIFPPLFMITILVLYKHRDNFNRLIDGKEPKIKFKHSVIEEIMEASPATSAEQEFPGKEVIDTNIDEAEKTEQAEAVKKPKAKKATTKAKKTTSKEETAKKPKSTKPKTKTVKEKE
>NC_006369.1|WP_011216247.1|2594733_2596143_-|amidase
MDAIHLLSATEIIRRIKMKELSAAEVMVAHLNHIDKINPVINALTERIPPEECLKRAKEIDKSIASKKNLNKLMGLPVAIKDALYVKGLICSSACSGFYKGEKAVRDATLVSRLKKEGAIILGLTNVPELCRGGDSDNLIYGRTNNPYDLARTSGGSSGGSAALIAAGGVPFALGSDGGGSLMQPAHCCGIVALKPTHGRLPHTGSVGGDSYGLIGNLISFGPMARSVSDLRLGLSVLAGSDQYDPYTNPVPVMPAAPLKKLRVAYFTENGFTPVDAEIQNVVKSAALALQDDVAIVREVRPDCVSKAFELHWELFLGGDRGAGFKTMLSELGVNNLSWELREFLRQAEQTQFSVTQLHQRMREIDLFRLEFALFMQDYDVLISPVFPTVAKPHGIGIREISDFSYAMTHNLSGFPTISLRCGTSAEGLSINVLIAANRWKDTTSLAVAERVEQLMGGYNPPSLIHSLQ
>NC_006369.1|WP_011216246.1|2593574_2594702_+|radical-SAM-family-heme-chaperone-HemW
MLPLSLYIHIPWCIRKCPYCDFNSHKSPDVLPEHQYIQALIEDLKTDISSYNTREINSIFIGGGTPSLFSAEAYNNLFNELKRILPFAKNIEITMEANPGTVEQHRFTDYRQSGINRLSLGIQSFNPNHLKILGRIHDEKQAHSAIDTARKAGFDNLNLDIMHSLPNQSITQGLEDLKTALSYQPEHLSWYQLTIEPNTVFYKHTPPLPSEEEDYLLEEQGFALLYNSGYHRYEISAFSKPEKQARHNINYWLFGDYLGIGAGAHGKMTTPNAIIRTRKHRQPKDYLDNEKPYLAARETITGKELLFEFMLNTTRLEQSIPLELFTTATGLELNQLLPLLKLANKKQLINLTDTHWQVTPLGRQYTNDLQALFLP
>NC_006369.1|WP_011216257.1|2608381_2608606_+|helix-turn-helix-transcriptional-regulator
MPAHEIANLVHYYRKHSGLSQQELARLAGVGKTVIYDIEKGKESVRLNTLLKVLDVLNIQMKFETPFPQTRDNN
>NC_006369.1|WP_011216258.1|2608605_2608914_+|HipA-N-terminal-domain-containing-protein
MRKAYISVNGIRAGILEELEGKKYQFTYLNDYQGAPVSLTMPLTNKIYDFDVFPPFFEGLLPEGIMLEALLRKYKIDKNDYFGQLIIVGQDVVGAVTIEELR
>NC_006369.1|WP_011216259.1|2608910_2609849_+|HipA-domain-containing-protein
MKRCPITYDLISDQENYSQRGLHLLSPQLKNLSPLDLSADEQRQEAIARVGKMSIQGVQKKLSAKLKIKEGGFEIVDQKGQYILKPQSDIYPELPENEAITMTLAKAIGLEVPVHGLVYSKDNSLTYFIKRFDRIGHNKKLALEDFAQLSGEDRHTKYKSSMEKVIAVIQQFCTFPKIEFVKLFKLTLFNFLVGNEDMHLKNFSLITKDRKISISPAYDLINSTIAQKNTKEEIALPLKGKKNNLTKSDFLKYFAVEKLGLNQNVIDGIVQEFHQIIPEWRKLIGFSFLSQQMQEKYIELLDQRCKRFNFFD
>NC_006369.1|WP_011216260.1|2610373_2611462_-|DDE-type-integrase/transposase/recombinase
MKTFFILIFYLLRSFAIMLSPGGTKKLVAENIILRKQLIITNRTRKKAPNLTKWERLLFAFLSGIVGIQRLFKTAVVIKPETLLKLHKNLVNKKYSSLFSRNSKRKPGLKGPNQDIINAVIAMKQRNPRFGCRRIAMQMNNIFGLNIDKDVVRRILAKFYRPTSGDKGPSWLTFIGHMKDSLWSIDFFRCESINLKSFWVMIVMDQFSRRIIGFASHQGDLHGLAICCMFNKIISEIKPPKYLSSDNDPLFQFHRWQANLRILEIEEIKTIPYTPISHPFVERLIRICRNELLDQTLFWTKSDLAAKFALFQTYFNEKRAHMGINGDTPNQIVNHDKSQVIDIKNYRWQKLCRGLFQLPIAA
>NC_006369.1|WP_011216261.1|2611817_2613191_+|ATP-binding-protein
MKRTLLKHLENWLISSDRKPLVIRGARQVGKTWLVRHFAEKSGKKLIELNFEKNPSYASLFNPNDPAKILLNLSTISNQKIDPEKCLLFLDEIQASPQLFSKLRWFAEDLPQLSVIAAGSLLEFVLAQHTFSMPVGRISYMHLEPLSFEEFLLANDKQSLYDYLYVYDLKTEVPAAIHENLTSLFKEYILVGGLPAVVSNWIKERSLNQVSQIQNDLLATYRDDFSKYSGRIATERLDEVMSSIPRMLGQKFIFSKVNKTIQSGTIKQILELLEKARISHRVKSCSANGVPLAAEVKEKYFKEIFLDVGLCSTALGLNLNQINSIDEIIMINNGGIAEQIVGQLLRTIDPPYIEPNLYCWHREEVGSSAEIDYVIQYGNKVIPIEVKAGSTGSLKSLHFFMGLKKYPFALRINSDYPNITNVDVKDNLGNPVKYNLISIPFYLVRQIHRLLTYVDLN
>NC_006369.1|WP_011216262.1|2613389_2614295_+|restriction-endonuclease
MAKSRTRKIAEKTIFAAFNILKNAGGELRGKEVIDKIRETVEFDDYEKHIYEKTGYVRWESILHFYTIDCMKAGYLRKSKGFWILTDEGAEAIKLGPEHLLNSVNKIYRQWNAVRKTENHESEIEDIEQASIATGQVQKAILDQYEENANAGIREFICNKNPYEFQDLVAALLDTMGYHISHITERGPDGGIDIVAYTDPLGTKQPRIIVQVKHRPLDSVASDAIQKLSGTLKRNTDVGIFVTSGQFSKPAIKEAINSREHIELIDFDRLIELWIEYYPKMRDDQKNLLPLHPIYFLGSNE
>NC_006369.1|WP_011216263.1|2615307_2615742_+|hypothetical-protein
MPFQLPFEKKKNPLNPERLCSSDICFVNLSVFSASELFAGADPEKVIQELTMVNKSYGSAISYNRLPAGSTKDLSEHSKYYLNLIDKAIEDVNLSLDDNSKATYSLRFALLQPLLVNLVAAAEVLKNEKTQEQEQKSSHSVRFM
>NC_006369.1|WP_011216264.1|2615809_2616448_-|RsmD-family-RNA-methyltransferase
MKSSEICPFGPKLQQYWDKRYDYFHRFDEGIQTDSEGLHTVMPEEATLTQAKLFNNAKIVVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGDFFDVAAEIKADAVLIDPPWGWPRYRKIEEFRLQHFNPNGSKLLSYVLDHFNKIVLRAPKTFITSELDQFNVNYEIHSDKLHHSIISISVCITNHSKRKS
>NC_006369.1|WP_011216266.1|2617352_2618807_+|hypothetical-protein
MENKTKALNFLNRIERCLVPQSNPQMMKQLLSALGLDNVTTGNEEYKFFIQTIRKKAIDLKLLIDKIKSDILKNEPLCTLLAYIEENELIDDAEIENASSTIQLQINLLCLLEAITITMANSNDFAHDIYNHMMKQRGKGATGNPFYNFLFGIPSRATLFERLKLISIDPGLTSIIFHRLMGANPETQADLDDFVSQNRLSGWNADIELANFDVASTSTLPAMGVNILEAVWEDATGHNKNTGGILNAQAGLGLIGIMEEQEYTTSFKLAETTLPQGTALHSDLGYSLIPELKVDNSPKKVSQFHIDKRWMNLYNSWNLCFVIANIDPVFVPLKLLIPSVFSAEPSNYKETRVLTLFLVANLFLNQKTLNHPLFSNNFSFRNGATIMKKWGEINKNHASELLQQCCLKEYKEPDALYNSIFGEHPHLNFVLKLVSYFQDSHQFRLTKTAKQTTLSDYSFFSGNAASMDNSEQLHLASQPSLNKV
>NC_006369.1|WP_011216267.1|2619172_2620081_+|LysR-family-transcriptional-regulator
MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTDSGHRLYEKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPKIEVDIIVGSDTKELYSSTFDLAISFDDVKHSKLVCKMLFSIQRKVFASPAYIAQHGLPQTLDELPKHNCLINTLYGLQNKWVFNKKIIHVSGSFKSNNAGVLKQAAVADVGILWVPYFSVYEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKALSENIVTSFIDENN

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Crispr_ID: NC_006369_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006369_2

3243127-3246277

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

52 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NC_006369_2

>merge|NC_006369|2|3243127-3246277|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAATTTTAAAAAACTTTAAGTTCTTTTCTGAAACAGTTCACTGCCGCACAGGCAGCTTAGAAACGATGAATCAACTATCAATAGATGGCGTTTACGTTCACTGCCGCACAGGCAGCTTAGAAAAATAAACAAAATTTGGAGTTAAATGTGAATGAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGCACATCATATGCGCAGTTAATCAACTTGTTCACTGCCGCACAGGCAGCTTAGAAAATACCGACACATTTTAATGGGATGGGGTGTCTGTTCACTGCCGCACAGGCAGCTTAGAAAACTTAATATTACCGAGCTAACATCAGCTAAAAGTTCACTGCCGCACAGGCAGCTTAGAAATATCGCAAGGCGTGTTCTTTGTATCATCCAGAGTTCACTGCCGCACAGGCAGCTTAGAAATGAAAAAACATTACACAATGATTCTACTATACGTTCACTGCCGCACAGGCAGCTTAGAAAATTACACATATGACACTTAATCATTATCAATCGTTCACTGCCGCACAGGCAGCTTAGAAAATCCTAAGCACAAGCTCGCGCACTGTAGCCGTGTTCACTGCCGCACAGGCAGCTTAGAAATGTATCCACTGGAGACTCTCTTCTAATTCTTAGTTCACTGCCGCACAGGCAGCTTAGAAATGCTGAATCAAATTGACGCCTATAAGTTAAATGTTCACTGCCGCACAGGCAGCTTAGAAATCTTTAACTTCTCTAATTATAGTACTGTTATCGTTCACTGCCGCACAGGCAGCTTAGAAAAGCAAAAAAACGAATCGTCGTCAAGCGCAAGTGTTCACTGCCGCACAGGCAGCTTAGAAAATCTGCTTCATAAATTAAAAATGGAGAACTAGGTTCACTGCCGCACAGGCAGCTTAGAAACACCATTAACAGTTCCTGCGAGTACCGGCACCAGTTCACTGCCGCACAGGCAGCTTAGAAAATAACAGCGCAAGAGATTAAGGGATAGATAAAGTTCACTGCCGCACAGGCAGCTTAGAAATTCTCAACACAGTCTTTTTTGCCATCTCTTCAGTTCACTGCCGCACAGGCAGCTTAGAAATATACCGACTGCGCTTCCGGTGGTTCTTTGTGGTTCACTGCCGCACAGGCAGCTTAGAAAAAAAGCCAACCGAGACAGCCAAAAAGAGCTTAGTTCACTGCCGCACAGGCAGCTTAGAAAATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTCGTTCACTGCCGCACAGGCAGCTTAGAAAATAGTGAAAGTAACATAACCACGAGCAAAAAGGTTCACTGCCGCACAGGCAGCTTAGAAATGATTGGTTTCTTTTTCTTGACTGTTCTTTGAGTTCACTGCCGCACAGGCAGCTTAGAAATCTGATAGCGCAACGGCACTGGCCACCCAGCAGTTCACTGCCGCACAGGCAGCTTAGAAAAGACAAGACTGGAACAATATCTCCAGCCTGTAGTTCACTGCCGCACAGGCAGCTTAGAAAATGAGCCAGTCGTATTTCATCTTGTTTTAGTAGTTCACTGCCGCACAGGCAGCTTAGAAAAGGCAGTCGGAGAGCAGGAAAACACGGAAATCGTTCACTGCCGCACAGGCAGCTTAGAAAGCTTGCTGTTGCTTTGCTTGTGCGTATTGCACGTTCACTGCCGCACAGGCAGCTTAGAAAATTTGAAAAATCTATCCCTAAATCTTATGTACGTTCACTGCCGCACAGGCAGCTTAGAAATCTTTGAAATGACAAAAAGGTATTATGAGTACGTTCACTGCCGCACAGGCAGCTTAGAAAACAAGAAAGCGTGGACTTAATAGAGTTACTAGGTTCACTGCCGCACAGGCAGCTTAGAAATTCCCACGATGCCAGCGAGCAAGAAACAGAGGGTTCACTGCCGCACAGGCAGCTTAGAAAGTCCATCCTTGCGTTTCCTTCCTTGTCGTATGGTTCACTGCCGCACAGGCAGCTTAGAAAATTTCGCCTTCAACGTCATGCGATAAATTTTTGTTCACTGCCGCACAGGCAGCTTAGAAAGCTTGAACTTCTGCGACTGCTCTATCGGATTGGTTCACTGCCGCACAGGCAGCTTAGAAATTTGGCTTCCAATGGCGTTGTATTAACAAAAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTCGCAACATTCCCGATTGACAAGTAAAGACGTTCACTGCCGCACAGGCAGCTTAGAAAATATTCTGTTTGACCAAAGCAATCATTTGAATGTTCACTGCCGCACAGGCAGCTTAGAAATACAAGTCAAAATTTTCTATTTCTTTGACAGCGTTCACTGCCGCACAGGCAGCTTAGAAAATAGATGTTACGTTAGACCAAAGTCATTTGGGGTTCACTGCCGCACAGGCAGCTTAGAAATTGCAGCGAAGGAGAAGTGCCATAATGTACAAGTTCACTGCCGCACAGGCAGCTTAGAAATTCACAACGCCTGGGTTAGTGCTAGGAGCAGAGTTCACTGCCGCACAGGCAGCTTAGAAATTCGCGTCTTTAATCTGTATATTCGGGTGTTAGTTCACTGCCGCACAGGCAGCTTAGAAAAATAAGGTCGAACTGCTACACTAAGTTTACACCGTTCACTGCCGCACAGGCAGCTTAGAAAACTACATTCTTTAATACTTGTGCCATTTCTTAGTTCACTGCCGCACAGGCAGCTTAGAAAAAATAACCGGATTGAACCTTCCCGAATAACACGTTCACTGCCGCACAGGCAGCTTAGAAATAATGCAATTATCATGAATAATACTATGCACTGTTCACTGCCGCACAGGCAGCTTAGAAAATTACGACAACATAGAAGGCATAACCACAAGGGTTCACTGCCGCACAGGCAGCTTAGAAATGTGCAGCTATTGGAGGCTTAGGGGCTAAGTTGTTCACTGCCGCACAGGCAGCTTAGAAAGCTGCTTATATTGGCGGCGACCTTTAAGATTTGTTCACTGCCGCACAGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAAT

>NC_006369|2|1|3243127-3246216|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGATGAATCAACTATCAATAGATGGCGTTTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATAAACAAAATTTGGAGTTAAATGTGAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCAGCACATCATATGCGCAGTTAATCAACTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATACCGACACATTTTAATGGGATGGGGTGTCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTAATATTACCGAGCTAACATCAGCTAAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCGCAAGGCGTGTTCTTTGTATCATCCAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGAAAAAACATTACACAATGATTCTACTATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACACATATGACACTTAATCATTATCAATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGTATCCACTGGAGACTCTCTTCTAATTCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGAATCAAATTGACGCCTATAAGTTAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTTAACTTCTCTAATTATAGTACTGTTATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTGCTTCATAAATTAAAAATGGAGAACTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CACCATTAACAGTTCCTGCGAGTACCGGCACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAACAGCGCAAGAGATTAAGGGATAGATAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCAACACAGTCTTTTTTGCCATCTCTTCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATACCGACTGCGCTTCCGGTGGTTCTTTGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGTGAAAGTAACATAACCACGAGCAAAAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTGATAGCGCAACGGCACTGGCCACCCAGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACAAGACTGGAACAATATCTCCAGCCTGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGGCAGTCGGAGAGCAGGAAAACACGGAAATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTGAAAAATCTATCCCTAAATCTTATGTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTTGAAATGACAAAAAGGTATTATGAGTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAAGAAAGCGTGGACTTAATAGAGTTACTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCCCACGATGCCAGCGAGCAAGAAACAGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCGCCTTCAACGTCATGCGATAAATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTTGAACTTCTGCGACTGCTCTATCGGATTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTGGCTTCCAATGGCGTTGTATTAACAAAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTCGCAACATTCCCGATTGACAAGTAAAGAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATTCTGTTTGACCAAAGCAATCATTTGAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAAGTCAAAATTTTCTATTTCTTTGACAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGATGTTACGTTAGACCAAAGTCATTTGGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGCAGCGAAGGAGAAGTGCCATAATGTACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCGCGTCTTTAATCTGTATATTCGGGTGTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATAAGGTCGAACTGCTACACTAAGTTTACACC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTACATTCTTTAATACTTGTGCCATTTCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAATAACCGGATTGAACCTTCCCGAATAACAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAATGCAATTATCATGAATAATACTATGCACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACGACAACATAGAAGGCATAACCACAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTGCTTATATTGGCGGCGACCTTTAAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTACAAAGCCTGCTGTATGCGTCTTTTAATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NC_006369|2|2|3243127-3246277|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGATGAATCAACTATCAATAGATGGCGTTTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATAAACAAAATTTGGAGTTAAATGTGAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCAGCACATCATATGCGCAGTTAATCAACTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATACCGACACATTTTAATGGGATGGGGTGTCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTAATATTACCGAGCTAACATCAGCTAAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCGCAAGGCGTGTTCTTTGTATCATCCAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGAAAAAACATTACACAATGATTCTACTATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACACATATGACACTTAATCATTATCAATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGTATCCACTGGAGACTCTCTTCTAATTCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGAATCAAATTGACGCCTATAAGTTAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTTAACTTCTCTAATTATAGTACTGTTATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTGCTTCATAAATTAAAAATGGAGAACTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CACCATTAACAGTTCCTGCGAGTACCGGCACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAACAGCGCAAGAGATTAAGGGATAGATAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCAACACAGTCTTTTTTGCCATCTCTTCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATACCGACTGCGCTTCCGGTGGTTCTTTGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGTGAAAGTAACATAACCACGAGCAAAAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTGATAGCGCAACGGCACTGGCCACCCAGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACAAGACTGGAACAATATCTCCAGCCTGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGGCAGTCGGAGAGCAGGAAAACACGGAAATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTGAAAAATCTATCCCTAAATCTTATGTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTTGAAATGACAAAAAGGTATTATGAGTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAAGAAAGCGTGGACTTAATAGAGTTACTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCCCACGATGCCAGCGAGCAAGAAACAGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCGCCTTCAACGTCATGCGATAAATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTTGAACTTCTGCGACTGCTCTATCGGATTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTGGCTTCCAATGGCGTTGTATTAACAAAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTCGCAACATTCCCGATTGACAAGTAAAGAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATTCTGTTTGACCAAAGCAATCATTTGAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAAGTCAAAATTTTCTATTTCTTTGACAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGATGTTACGTTAGACCAAAGTCATTTGGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGCAGCGAAGGAGAAGTGCCATAATGTACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCGCGTCTTTAATCTGTATATTCGGGTGTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATAAGGTCGAACTGCTACACTAAGTTTACACC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTACATTCTTTAATACTTGTGCCATTTCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAATAACCGGATTGAACCTTCCCGAATAACAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAATGCAATTATCATGAATAATACTATGCACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACGACAACATAGAAGGCATAACCACAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTGCTTATATTGGCGGCGACCTTTAAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTACAAAGCCTGCTGTATGCGTCTTTTAATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGATGTTCGTGCGCCCTATTCGCAGTTATTA
GTTCACTGCCGCACAGGCAGCTTAGAAAT

>NC_006369|2|1|3243127-3246276|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGATGAATCAACTATCAATAGATGGCGTTTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATAAACAAAATTTGGAGTTAAATGTGAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCAGCACATCATATGCGCAGTTAATCAACTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATACCGACACATTTTAATGGGATGGGGTGTCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTAATATTACCGAGCTAACATCAGCTAAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCGCAAGGCGTGTTCTTTGTATCATCCAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGAAAAAACATTACACAATGATTCTACTATAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACACATATGACACTTAATCATTATCAATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGTATCCACTGGAGACTCTCTTCTAATTCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGAATCAAATTGACGCCTATAAGTTAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTTAACTTCTCTAATTATAGTACTGTTATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCTGCTTCATAAATTAAAAATGGAGAACTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CACCATTAACAGTTCCTGCGAGTACCGGCACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAACAGCGCAAGAGATTAAGGGATAGATAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCAACACAGTCTTTTTTGCCATCTCTTCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATACCGACTGCGCTTCCGGTGGTTCTTTGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGTGAAAGTAACATAACCACGAGCAAAAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTGATAGCGCAACGGCACTGGCCACCCAGCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACAAGACTGGAACAATATCTCCAGCCTGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGGCAGTCGGAGAGCAGGAAAACACGGAAATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTGAAAAATCTATCCCTAAATCTTATGTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTTGAAATGACAAAAAGGTATTATGAGTAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAAGAAAGCGTGGACTTAATAGAGTTACTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCCCACGATGCCAGCGAGCAAGAAACAGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCGCCTTCAACGTCATGCGATAAATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTTGAACTTCTGCGACTGCTCTATCGGATTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTGGCTTCCAATGGCGTTGTATTAACAAAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTCGCAACATTCCCGATTGACAAGTAAAGAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATTCTGTTTGACCAAAGCAATCATTTGAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAAGTCAAAATTTTCTATTTCTTTGACAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGATGTTACGTTAGACCAAAGTCATTTGGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGCAGCGAAGGAGAAGTGCCATAATGTACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCGCGTCTTTAATCTGTATATTCGGGTGTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATAAGGTCGAACTGCTACACTAAGTTTACACC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTACATTCTTTAATACTTGTGCCATTTCTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAATAACCGGATTGAACCTTCCCGAATAACAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAATGCAATTATCATGAATAATACTATGCACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACGACAACATAGAAGGCATAACCACAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTGCTTATATTGGCGGCGACCTTTAAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTACAAAGCCTGCTGTATGCGTCTTTTAATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGATGTTCGTGCGCCCTATTCGCAGTTATTA
GTTCACTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_006369.1\|WP_011216763.1\|3252156_3252483_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_006369.1\|WP_011216752.1\|3234733_3235702_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_006369.1\|WP_011216754.1\|3239086_3240352_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_006369.1\|WP_011216749.1\|3233250_3233541_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NC_006369.1\|WP_011216762.1\|3251744_3252164_+\|nucleotidyltransferase-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378048
NC_006369.1\|WP_011216757.1\|3242340_3242895_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NC_006369.1\|WP_011216759.1\|3248250_3248754_-\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_011216765.1\|3253829_3254519_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_006369.1\|WP_011216768.1\|3257325_3258156_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NC_006369.1\|WP_011216756.1\|3241305_3242331_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_006369.1\|WP_011216746.1\|3229720_3231208_+\|lpg2912-family-Dot/Icm-T4SS-effector	unknown	unknown	unknown
NC_006369.1\|WP_011216748.1\|3232769_3232961_+\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_011216766.1\|3254511_3255657_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_006369.1\|WP_011216761.1\|3250214_3251177_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NC_006369.1\|WP_011216753.1\|3235698_3239094_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NC_006369.1\|WP_011216767.1\|3255653_3257282_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_006369.1\|WP_011216755.1\|3240348_3241290_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_006369.1\|WP_011216747.1\|3231605_3232502_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365909
NC_006369.1\|WP_011216760.1\|3248863_3249910_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223567
NC_006369.1\|WP_011216764.1\|3252639_3253833_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
NC_006369.1\|WP_011216763.1\|3252156_3252483_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	3.38351e-16
NC_006369.1\|WP_011216752.1\|3234733_3235702_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_006369.1\|WP_011216754.1\|3239086_3240352_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.15582e-162
NC_006369.1\|WP_011216749.1\|3233250_3233541_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	1.04018e-22
NC_006369.1\|WP_011216757.1\|3242340_3242895_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	9.12405e-87
NC_006369.1\|WP_011216760.1\|3248863_3249910_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223567	COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].	9.26274e-05
NC_006369.1\|WP_011216765.1\|3253829_3254519_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.65012e-111
NC_006369.1\|WP_011216768.1\|3257325_3258156_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	4.42339e-161
NC_006369.1\|WP_011216756.1\|3241305_3242331_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_006369.1\|WP_011216762.1\|3251744_3252164_+\|nucleotidyltransferase-substrate-binding-protein	gnl\|CDD\|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	1.84677e-53
NC_006369.1\|WP_011216761.1\|3250214_3251177_-\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	4.06529e-139
NC_006369.1\|WP_011216753.1\|3235698_3239094_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_006369.1\|WP_011216767.1\|3255653_3257282_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	9.60384e-32
NC_006369.1\|WP_011216755.1\|3240348_3241290_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	7.30482e-141
NC_006369.1\|WP_011216747.1\|3231605_3232502_-\|hypothetical-protein	gnl\|CDD\|365909	pfam00153, Mito_carr, Mitochondrial carrier protein.	0.00272222
NC_006369.1\|WP_011216766.1\|3254511_3255657_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.75306e-31
NC_006369.1\|WP_011216764.1\|3252639_3253833_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.68508e-46

>NC_006369.1|WP_011216757.1|3242340_3242895_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLEISILPDSEFTTPVLMNAIYTNLHKALHTLASTSIGVSFPKYSSTLGNILRIHGKKEVLQDLQNLNWIGGMIGYCEASLIKTVPADTKFRTVSRKQPTMSQSKLRRLIKRNTLTEDEIRQYKAKMFSKGLDNPYIELVSVSNGQRHRRYIEFGELFNEPSPGLFDQFGLSNSATVPWFD
>NC_006369.1|WP_011216756.1|3241305_3242331_+|type-I-F-CRISPR-associated-protein-Csy3
MTKKEHIASVLAFEKKLVPSDGYMYGCKWEHKDKATPLRLNEKSVRGTISNRLKPALQRDPAALNNEVEKPNLQTVDTCSLGSEEDTLKLYFTLKVLGGLKHPSACNNAAFKQSYQLAVSNYLETKGMRELAKRYALNIANARFLWRNRFGAENIQVEVRALNEGAEKSWNFNALDFNPRDLETTTNEVDSLADRIADALASDNDFLMLQITCYARIGKAQDVYPSEELVLDKGKGKKSKILYAVDGIAAMHSQKIGNALRTIDTWYPEFSDPVSSAGPIAIEPYGAVTNLGKAFRTPADKQDFYTFFDTWARGGELSRVEDEHYMMAVLVRGGVFGESDK
>NC_006369.1|WP_011216755.1|3240348_3241290_+|type-I-F-CRISPR-associated-protein-Csy2
MSSNLILLPRIRVQNANALSSPFTIGFPAMTGWLGGVHALQRKLNTNSIAVMFSAVGVVVHRFDLQIYKGPGDFVHSIVGTGNPLEPKSEKDKPKGNAVRPSFIEEPRCHLEVSLLVEYSGIEAQDEQLMLERIYQLMLGNMKLAGGDILNCKEPEILRDFQKAKRKLMPGYALIERRDLMQAAMEQGQDAMDAMLDYVAVHYSCTKEIVNGQERVIWQRKRKSTGLDDQTGWIVPIATGFHGISELGTAINQRDPDTPHLFAESVVTLGEFKMPYRLESPDDLLWRYHVESENNLYLCIQQKSISETSNDDY
>NC_006369.1|WP_011216754.1|3239086_3240352_+|type-I-F-CRISPR-associated-protein-Csy1
MFDPAITDFFAERKKSWLKKKLKPDMTELEKNNILQECEDIFALENWLPNAAKRAGWMSISTHPCTFSHPSSRKNKNGYVTSIIAKAPRKADGYLRSGNVHVALDALGNAAALDVYKFLSLVTEDGKTIIEHIQQNTEVAKSLLSIKTDSYENLRVGFLEMVSSNEASITSSKIKQVYFPMGNEYHQLSVLSNSGMIFELRERIDALRFSDTVKRGRELRRGNFYSELGYKEIYDVTTIAYGGTKPQNVSVLNNQYGGKAYLLFSAPPMLEQREITFPTKDFFVQSIRYYDCKEILEQLDNIFKIECYGKISLDKIRKGRDRCLSDMLDMILQKMMVLREASKNQFRSQSSSLPDWQKIWLCEQYIEERVKRDDWLETLCVQIALWINSAYKNSIKHPTMLGEAERRYFNDFINQHREALR
>NC_006369.1|WP_011216753.1|3235698_3239094_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVIFVSQCEKKALARTRRVLDAFADRIGDNTWQTVITQEGLLAVKKLLRKTASKNTAVSCHWIRSRSRTELVWVVGNKGKFDREGRVAVNSTSKNQVYRDDLLDWKLLPVIQSLACLAALLHDWGKANARFQQKLAKNFKGIPADRLRHEWVSCLILKALILNTDNPYSDSDWLGTLKDGIINEDAIKTALRMSCEKPLADLPNIAKLIAWLVVSHHKLPVNPDNLFNGSECFSLDGLLKLIDKSWGYENKTVDEISLCLEFPHGLLTRSSKWLSQIKRWSAKVLGMEELISQTINDGSYCVLLHHARLSLMLGDHYFSSLDVNQTSNWKFTTELIANTQKDKSPKQALDQHLVGVYESARDVVAKLPLIENRLEFSFNTAELKRKSPPAYAWQDTAAKKVRDWRLSCNDTRKGFFAVNIASTGCGKTFANAKVMMALSEDGDSLRYVLALGLRTLTLQTGDEYRERIFNKNDGSDLAVLIGSKAIADLHYQSRLDQTYEQEQQGSESIESLLADSDEIVYQGELPEEGLTTILKKHKDRQLLYAPVLVCTIDHMIAATETTRGGRYILPSLRLLSSDLVIDEVDDFTGSDLIAIGRLIHLAGMLGRKVMISSATIPPAMAEGYFNAYREGWLLYCKTRNANPMVGCAWIDEFSTQVEEIGIREHATQEFRKIHDKYIDRRVKHLNKQPAKRKAIVINCEEVMKRSDEPVVKNKKEAWFNRIAQTTLDMHKLNNTIDKKTGLKVSFGVVRIANIQPCIQLTRYLLTYDWPEHSEARIMAYHSRQVLLLRHEQEKHLDKVLKRKEKRGEKPQAFYDETIRRHLDTIAANRPDVKNLLFILVATPVEEVGRDHDFDWAVIEPSSYRSIIQLAGRVMRHREDKIEYPNIAILQYNWRTIKYGDAERKPRFYFPGYEPDPRKRQANKLSNGKNDCLNSHDIFKIVDINLIKARLDSIPRIQEQPENSKTPMALLEHAVIESLLTNYEGKGPETLQGYIQWYWRLTALPQYLNRFRQSTKTTQLYRVANETGKAWFTERDTRGYFSYVNTGEFARQDDAYQISTLPLTAEQSQRLWIQRDYFHLLREQMEISEMSIDKAAIHYGEISLDVYPDSINTEYEYNDQLGLYKKESNHV
>NC_006369.1|WP_011216752.1|3234733_3235702_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MEILTDLKAILHSKRANIYYLEKCRIMQKDGRVLYLTEAKNENQYWNIPIANTTCLLLGTGTSITQAAMRMLAQAGVLVGFCGGGGTPLLMANEVEWLTPQSEYRPTEYMQGWMKFWFDEQKRLYAAKQFQLSRIEYLRVHWKKSRDLAAEGFNSDDLQPELLSSELKIKKAKEVVKLMQNEAELTKQLYRYAANRTQYGKFIREREAIDKANIFLNHGNYLAYGLAATTLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDALILPWAFICAKENSSEQEFRQQCLQAFIDHKALDYMFEQVKAMALNTDWESENSEENLL
>NC_006369.1|WP_011216749.1|3233250_3233541_-|helix-turn-helix-domain-containing-protein
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIGTLRNWEQGRREPTGPAKALLRAINKDPEHVLAALAG
>NC_006369.1|WP_011216748.1|3232769_3232961_+|hypothetical-protein
MRNKDEKAKEVATDSRCAESNRLTHLITGAILADNCFFPNGAYSIKPMVSSPQPPQEKTTPSM
>NC_006369.1|WP_011216747.1|3231605_3232502_-|hypothetical-protein
MKDKTIPSPDAKSFNKKEFSENVAKGAIVGATSTTMTFGLFDKPLAIATKASSEVAQHPWRGIKSLFAGALNGSFSTSWNNSLYAQAYRAYLEHPVKGYPVALLNSCLKNVVFFPAKYGSERALYALSGNEQQAKNYSGFLAGLMTVYLTAPISVVKARLMTNVPLNTLSLKRLGSGVNAIAMRDCIQYGIYFNAKERLNEKIGDGVMAGGIAGIVGYVFSNPLSVIGLNQKTAVESVNIPNMAKRIYQANGVKGFYPLVGLAAWGMFARGVAIHQGTKLYESLQEKEAYGRPTRNRE
>NC_006369.1|WP_011216746.1|3229720_3231208_+|lpg2912-family-Dot/Icm-T4SS-effector
MSYSKIDVLERKWSSLEAIVKSYTDPVEYHLPEIKKLMTAEFVVDFSSHAIYLHTEYVHRFTQQLINLRNTSPNDERLVYIHQLWTDLLNCRNQNPLKIKHHKKLDGECTFNFSLKMMEGKPYDFKEVQILDPNNTAEFNKAMGEIKRIDSLAHGANFGDLPFIGDIVLSSMLHYKETICFIAKDKNDEVIGYCWGMMLRDIPAGEKDKVNVFWVMNLAKHPDFYDPNIKVGEVLRQHLANTLSKNPDCHFLGYEHVLNHNFHLAIVDGGVPKKEETISIGQNQYQAKSLVKYEPLKMQYDRKHIIKTNNHQYPYPKVDVIKSNFFTALWYAAPTAFDFILGGMLIYGRAYYQQWTHSMLGQPVTHRIEKPISQEQQICDMNILKRIILSDVWGQQGTTLFFDACIPNTIQKLQQLVKEDQIEFASLQQCVAKSGWALCRSKLTAYFYFAITQSQYPSAAINLLIQNDMTPKKWIELISEERQIFAQQSSERASI
>NC_006369.1|WP_011216759.1|3248250_3248754_-|hypothetical-protein
MIKIFIYLGLLLSSNLLMAKPLSQLDSANLAPCFNIEQAERIGKQINKLLQHEFCEENINPKKFASISHNILPKIMTETFLGVTPPENWQQLSNDIIKNCITNKNLCKKAARKELEECIKPKIPLILIQFGPWFAQNCPQLNKSLIEQWPNKQTILKKIINENKSVE
>NC_006369.1|WP_011216760.1|3248863_3249910_-|FAD-dependent-oxidoreductase
MKHKSFQWSVVGAGPAGIAAVGKLLDYGIAPSEILWIDPHFKVGDFGQLWRHVSSNTTVKLFSSFLHAANSFSYKKAPSTFRLNNLDPDNTCLLSDVAEPLQWVTSVLVNQVIAEETVIHSLSLSGGCWTLCSDTQQYRAKNVILATGAVPSSLNCPGVNVVPFEIAIDKQRLASFVDTNETYGVFGSSHSAIMILRSLIELGVKKVINFYRSPCRYAINMGNWILFDNTGLKGDTAAWARKHIDGVLPANLVRYYPSELNIARHLPECDKVIYAVGFERRKNMIIDNYEHVTPNPHVGIIGPGLFGLGIAYPELNVDPFGTVEHQVGLWKFMVYLCKVLPVWFKYPA
>NC_006369.1|WP_011216761.1|3250214_3251177_-|lytic-murein-transglycosylase
MKKWGLAIVALMLFNQMTYASQSWNQWVAGVREEALQQGIPPGLFDEAFAGIHEPSRKIKGFLRSQPEHRLTFMKYRNTRADNYRIVIGRKEYKRNKEILEEIAQQYGVNPCFIVSFWGMETSYGSYMGNFPVINALATLAYDSNRKDFFRKELFLALHILKGGHVSLADFKGEWAGASGQPQFLPSSWVKYAVDYDGDGRKDIWKSKPDVFASIANYMKQNGWQAGEPWAIQVKLPAKFDMKLEGKSIVKPVSEWNALGVRTESGEPLPYQNLQASIVQPYGGPTFLAFPNYKMILRYNNSIYYAGAIGYMADKICQGQ
>NC_006369.1|WP_011216762.1|3251744_3252164_+|nucleotidyltransferase-substrate-binding-protein
MTNIDVRWQQRLNNYARALQQLSLAVNLAQTRPLSDLEKQGLIQAFEFTHELAWNVMKDYFFFQGNSAITGSRDATRESFNKGLIKEGEIWMEMIKSRNQTSHTYNQSVADEIVKNIINSYHTSFQAFLEKMQGLKEHE
>NC_006369.1|WP_011216763.1|3252156_3252483_+|nucleotidyltransferase-domain-containing-protein
MNEQLNHLYGLPSHAIEALKCVFKEYPQIDNAILYGSRAKGTYHQGSDIDLCLTGNLLGITELLSIENKIDDLLLPWKVDISLKHTIDNPDLLEHIERAGILFYTKES
>NC_006369.1|WP_011216764.1|3252639_3253833_-|ABC-transporter-permease
MNFLNHCQQALVNLTASKLRSLLAVLGILVGTAAVVALISCGQLATEKALEQFKALGTDLLAVSVYQKVPSKSHSESDSLTIDQWQQIAERIPYVLRIAPYSTAYQTLSFNGKVMQGAVIGADESLADIIHVTLTQGHFVSFLDSFEHFCVIGDSLAQQIKEITLDDPIGKQLRIGQSLYTIIGVAERWKENGFFNEDINQAVIIPLAGMSLVSKDAKINNAVLLLKPDSPIDEVINEIKEIINSQAPKLSVFPRSAKQIIASMENQGRIFTLLLAVIGGISLLVGGIGVMNVMLVSVSERKKEIGIRKAVGAKNREIQALFLVESVMLSLLGGVLGVVLGLIFTRIVAYFSDWTFTIYLLPPIAGFLVSAATGIFFGFYPARRASKLEPMVSLRSE
>NC_006369.1|WP_011216765.1|3253829_3254519_-|ABC-transporter-ATP-binding-protein
MIDRPLIQLSDLVKTYHLEGISTTVLKAVSLTVNEGDLLAIVGASGSGKSTLMNIIGLLDKPDAGTYTLNNRNVASLSDDEAADLRNQNIGFVFQQFNLLPRFTAMQNVALPLTYRGVNPTLIKEKVEQALDKVGMRQYIRHRPTQLSGGQQQRVAIARALVTDPQVILADEPTGALDSRTGSEVMNLFLALHQEGRTIIMVTHDEHVAAQCKRRITLADGAIIAESGQ
>NC_006369.1|WP_011216766.1|3254511_3255657_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLTSPMEAVVETMHFHYGQMVKKGEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGTEELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLEKMDDKNTQNISNLSLADFDKVRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVEIDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSLTPEQQSWIKVGMSASIELNVESNNQLLIPIAAVKREKGSSVVHVQLAKGKVQKRMITTGAAQADSVVVESGLKSGDVVVYD
>NC_006369.1|WP_011216767.1|3255653_3257282_-|TolC-family-protein
MKFLNKSTALLPVIILSGLISFHASSAKTSSNADNSLYSWTENPSAEAQRVEQAEERLKAAIANPEYMLKNWIELPTSPESKKKTRHQLTIREAILLALRYNPNIQNAELDRIIQRYQLRLANNEFELQYALGASGVVQKSTFEGIGSSTNHSFLASPELDLKTKIGTKASVSIDNNVSTNNSYNPVLNLSITQPLLRGFGKSANEAKLLDAIDKEWLNKLSLQQSVMDQITQVITAYRALILSGNNLENQRLQLEEARKSYRINEKKIAAGQLEPTGNIQQSYQIESLSLMVEQGENDFKLASQELLQMIGLDPDLHISVPSDVTIKEIIVPDLQESIAIALSHNTQYLAQKMALRADERAYTVAKNQQLWQLDLAGTVQGGAVNDVTGTSSGLSSIYNGNNITESARVTLTIPLNDIGRRSQLINAKVQLEKDKINLIAAKRALITSVTNTINNIQSLAKRYELAQKQVKLAEQSYALEKKKQQAGISSALDVNNTQNQLIQAQSGLIGAKIAYLNQLSALQRILGTTLDYWQIKLRYGG
>NC_006369.1|WP_011216768.1|3257325_3258156_-|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MPDYAIGDIQGCYDPLQRLLELIDFNEKDDCLWFVGDLVNRGPDSLAVLRFIYSLPVKPKITLGNHDLHLLGLLFGGQPWKGHDDTLEEVMLADDGEELGHWLRKQSLLCRSSELNIVMCHAGIAPLWDLSKAVGLANELEAVLSGDSYHEFFAQMYGNKPDIWSDDLVGLDRLRVITNYFTRMRYCDAHGRLDLGYKGTLSKAPNHLYPWFEVPCRKEIEMDIVFGHWAALMGRSSHPRIHAIDTGCLWGGQLTALRLQDRQRFSVPGYGVSRFE

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Crispr_ID: NC_006369_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006369_3

3246643-3247392

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

12 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NC_006369_3

>merge|NC_006369|3|3246643-3247392|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCACAGGCAGCTTAGAAATCTTGCGGCGCGTCTTTGTCTTCCATTAATTCGTTCACTGCCGCACAGGCAGCTTAGAAACAACAGACACGACAGGGTAGGGTTGCCCACAAAGTTCACTGCCGCACAGGCAGCTTAGAAAGCCATCATGATTACTAAAGTCGATTGTGACCCGTTCACTGCCGCACAGGCAGCTTAGAAACAAAGTGTACGGAGATAGACCGCAAGACGACAGTTCACTGCCGCACAGGCAGCTTAGAAAAATATAAAGCATCGGGAAAATGTAGACAAAATGTTCACTGCCGCACAGGCAGCTTAGAAAAAATGCACGGCGCAAAAGTCAGAAAACAGCCTGTTCACTGCCGCACAGGCAGCTTAGAAAAGACAGAAATCCGGCTGGGCTAGAAATGATGAGTTCACTGCCGCACAGGCAGCTTAGAAATCTTGCCTGCTCTTAACTACAACTCCAGACCAGTTCACTGCCGCACAGGCAGCTTAGAAAAAACAACCACACCTCCCTTTTTAGTTAATCTAGTTCACTGCCGCACAGGCAGCTTAGAAAGATTCGATACATTTTTTAACTCGTCGCCCCAGTGTTCACTGCCGCACAGGCAGCTTAGAAG

>NC_006369|3|2|3246643-3247392|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTACCACGGCACAAACACCGCCTGAAAGTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAACAGACACGACAGGGTAGGGTTGCCCACAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCATCATGATTACTAAAGTCGATTGTGACCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAAGTGTACGGAGATAGACCGCAAGACGACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATATAAAGCATCGGGAAAATGTAGACAAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAATGCACGGCGCAAAAGTCAGAAAACAGCCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACAGAAATCCGGCTGGGCTAGAAATGATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTGCCTGCTCTTAACTACAACTCCAGACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAACAACCACACCTCCCTTTTTAGTTAATCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATTCGATACATTTTTTAACTCGTCGCCCCAGT
GTTCACTGCCGCACAGGCAGCTTAGAAG

>NC_006369|3|3|3246643-3247392|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTACCACGGCACAAACACCGCCTGAAAGTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAACAGACACGACAGGGTAGGGTTGCCCACAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCATCATGATTACTAAAGTCGATTGTGACCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAAGTGTACGGAGATAGACCGCAAGACGACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATATAAAGCATCGGGAAAATGTAGACAAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAATGCACGGCGCAAAAGTCAGAAAACAGCCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACAGAAATCCGGCTGGGCTAGAAATGATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTGCCTGCTCTTAACTACAACTCCAGACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAACAACCACACCTCCCTTTTTAGTTAATCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATTCGATACATTTTTTAACTCGTCGCCCCAGT
GTTCACTGCCGCACAGGCAGCTTAGAAG

>NC_006369|3|2|3246643-3247392|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTACCACGGCACAAACACCGCCTGAAAGTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAACAGACACGACAGGGTAGGGTTGCCCACAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCATCATGATTACTAAAGTCGATTGTGACCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAAAGTGTACGGAGATAGACCGCAAGACGACA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATATAAAGCATCGGGAAAATGTAGACAAAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAATGCACGGCGCAAAAGTCAGAAAACAGCCT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGACAGAAATCCGGCTGGGCTAGAAATGATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TCTTGCCTGCTCTTAACTACAACTCCAGACCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAACAACCACACCTCCCTTTTTAGTTAATCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATTCGATACATTTTTTAACTCGTCGCCCCAGT
GTTCACTGCCGCACAGGCAGCTTAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_006369.1\|WP_011216763.1\|3252156_3252483_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_006369.1\|WP_011216752.1\|3234733_3235702_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_006369.1\|WP_011216754.1\|3239086_3240352_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_006369.1\|WP_011216749.1\|3233250_3233541_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NC_006369.1\|WP_011216762.1\|3251744_3252164_+\|nucleotidyltransferase-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378048
NC_006369.1\|WP_011216757.1\|3242340_3242895_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NC_006369.1\|WP_011216759.1\|3248250_3248754_-\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_011216765.1\|3253829_3254519_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_006369.1\|WP_011216768.1\|3257325_3258156_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NC_006369.1\|WP_011216756.1\|3241305_3242331_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_006369.1\|WP_011216746.1\|3229720_3231208_+\|lpg2912-family-Dot/Icm-T4SS-effector	unknown	unknown	unknown
NC_006369.1\|WP_011216748.1\|3232769_3232961_+\|hypothetical-protein	unknown	unknown	unknown
NC_006369.1\|WP_011216766.1\|3254511_3255657_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_006369.1\|WP_011216761.1\|3250214_3251177_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NC_006369.1\|WP_011216753.1\|3235698_3239094_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NC_006369.1\|WP_011216767.1\|3255653_3257282_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_006369.1\|WP_011216755.1\|3240348_3241290_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_006369.1\|WP_011216747.1\|3231605_3232502_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365909
NC_006369.1\|WP_011216760.1\|3248863_3249910_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223567
NC_006369.1\|WP_011216764.1\|3252639_3253833_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
NC_006369.1\|WP_011216763.1\|3252156_3252483_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	3.38351e-16
NC_006369.1\|WP_011216752.1\|3234733_3235702_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_006369.1\|WP_011216754.1\|3239086_3240352_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.15582e-162
NC_006369.1\|WP_011216749.1\|3233250_3233541_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	1.04018e-22
NC_006369.1\|WP_011216757.1\|3242340_3242895_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	9.12405e-87
NC_006369.1\|WP_011216760.1\|3248863_3249910_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223567	COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].	9.26274e-05
NC_006369.1\|WP_011216765.1\|3253829_3254519_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.65012e-111
NC_006369.1\|WP_011216768.1\|3257325_3258156_-\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	4.42339e-161
NC_006369.1\|WP_011216756.1\|3241305_3242331_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_006369.1\|WP_011216762.1\|3251744_3252164_+\|nucleotidyltransferase-substrate-binding-protein	gnl\|CDD\|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	1.84677e-53
NC_006369.1\|WP_011216761.1\|3250214_3251177_-\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	4.06529e-139
NC_006369.1\|WP_011216753.1\|3235698_3239094_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_006369.1\|WP_011216767.1\|3255653_3257282_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	9.60384e-32
NC_006369.1\|WP_011216755.1\|3240348_3241290_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	7.30482e-141
NC_006369.1\|WP_011216747.1\|3231605_3232502_-\|hypothetical-protein	gnl\|CDD\|365909	pfam00153, Mito_carr, Mitochondrial carrier protein.	0.00272222
NC_006369.1\|WP_011216766.1\|3254511_3255657_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.75306e-31
NC_006369.1\|WP_011216764.1\|3252639_3253833_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.68508e-46

>NC_006369.1|WP_011216757.1|3242340_3242895_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLEISILPDSEFTTPVLMNAIYTNLHKALHTLASTSIGVSFPKYSSTLGNILRIHGKKEVLQDLQNLNWIGGMIGYCEASLIKTVPADTKFRTVSRKQPTMSQSKLRRLIKRNTLTEDEIRQYKAKMFSKGLDNPYIELVSVSNGQRHRRYIEFGELFNEPSPGLFDQFGLSNSATVPWFD
>NC_006369.1|WP_011216756.1|3241305_3242331_+|type-I-F-CRISPR-associated-protein-Csy3
MTKKEHIASVLAFEKKLVPSDGYMYGCKWEHKDKATPLRLNEKSVRGTISNRLKPALQRDPAALNNEVEKPNLQTVDTCSLGSEEDTLKLYFTLKVLGGLKHPSACNNAAFKQSYQLAVSNYLETKGMRELAKRYALNIANARFLWRNRFGAENIQVEVRALNEGAEKSWNFNALDFNPRDLETTTNEVDSLADRIADALASDNDFLMLQITCYARIGKAQDVYPSEELVLDKGKGKKSKILYAVDGIAAMHSQKIGNALRTIDTWYPEFSDPVSSAGPIAIEPYGAVTNLGKAFRTPADKQDFYTFFDTWARGGELSRVEDEHYMMAVLVRGGVFGESDK
>NC_006369.1|WP_011216755.1|3240348_3241290_+|type-I-F-CRISPR-associated-protein-Csy2
MSSNLILLPRIRVQNANALSSPFTIGFPAMTGWLGGVHALQRKLNTNSIAVMFSAVGVVVHRFDLQIYKGPGDFVHSIVGTGNPLEPKSEKDKPKGNAVRPSFIEEPRCHLEVSLLVEYSGIEAQDEQLMLERIYQLMLGNMKLAGGDILNCKEPEILRDFQKAKRKLMPGYALIERRDLMQAAMEQGQDAMDAMLDYVAVHYSCTKEIVNGQERVIWQRKRKSTGLDDQTGWIVPIATGFHGISELGTAINQRDPDTPHLFAESVVTLGEFKMPYRLESPDDLLWRYHVESENNLYLCIQQKSISETSNDDY
>NC_006369.1|WP_011216754.1|3239086_3240352_+|type-I-F-CRISPR-associated-protein-Csy1
MFDPAITDFFAERKKSWLKKKLKPDMTELEKNNILQECEDIFALENWLPNAAKRAGWMSISTHPCTFSHPSSRKNKNGYVTSIIAKAPRKADGYLRSGNVHVALDALGNAAALDVYKFLSLVTEDGKTIIEHIQQNTEVAKSLLSIKTDSYENLRVGFLEMVSSNEASITSSKIKQVYFPMGNEYHQLSVLSNSGMIFELRERIDALRFSDTVKRGRELRRGNFYSELGYKEIYDVTTIAYGGTKPQNVSVLNNQYGGKAYLLFSAPPMLEQREITFPTKDFFVQSIRYYDCKEILEQLDNIFKIECYGKISLDKIRKGRDRCLSDMLDMILQKMMVLREASKNQFRSQSSSLPDWQKIWLCEQYIEERVKRDDWLETLCVQIALWINSAYKNSIKHPTMLGEAERRYFNDFINQHREALR
>NC_006369.1|WP_011216753.1|3235698_3239094_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVIFVSQCEKKALARTRRVLDAFADRIGDNTWQTVITQEGLLAVKKLLRKTASKNTAVSCHWIRSRSRTELVWVVGNKGKFDREGRVAVNSTSKNQVYRDDLLDWKLLPVIQSLACLAALLHDWGKANARFQQKLAKNFKGIPADRLRHEWVSCLILKALILNTDNPYSDSDWLGTLKDGIINEDAIKTALRMSCEKPLADLPNIAKLIAWLVVSHHKLPVNPDNLFNGSECFSLDGLLKLIDKSWGYENKTVDEISLCLEFPHGLLTRSSKWLSQIKRWSAKVLGMEELISQTINDGSYCVLLHHARLSLMLGDHYFSSLDVNQTSNWKFTTELIANTQKDKSPKQALDQHLVGVYESARDVVAKLPLIENRLEFSFNTAELKRKSPPAYAWQDTAAKKVRDWRLSCNDTRKGFFAVNIASTGCGKTFANAKVMMALSEDGDSLRYVLALGLRTLTLQTGDEYRERIFNKNDGSDLAVLIGSKAIADLHYQSRLDQTYEQEQQGSESIESLLADSDEIVYQGELPEEGLTTILKKHKDRQLLYAPVLVCTIDHMIAATETTRGGRYILPSLRLLSSDLVIDEVDDFTGSDLIAIGRLIHLAGMLGRKVMISSATIPPAMAEGYFNAYREGWLLYCKTRNANPMVGCAWIDEFSTQVEEIGIREHATQEFRKIHDKYIDRRVKHLNKQPAKRKAIVINCEEVMKRSDEPVVKNKKEAWFNRIAQTTLDMHKLNNTIDKKTGLKVSFGVVRIANIQPCIQLTRYLLTYDWPEHSEARIMAYHSRQVLLLRHEQEKHLDKVLKRKEKRGEKPQAFYDETIRRHLDTIAANRPDVKNLLFILVATPVEEVGRDHDFDWAVIEPSSYRSIIQLAGRVMRHREDKIEYPNIAILQYNWRTIKYGDAERKPRFYFPGYEPDPRKRQANKLSNGKNDCLNSHDIFKIVDINLIKARLDSIPRIQEQPENSKTPMALLEHAVIESLLTNYEGKGPETLQGYIQWYWRLTALPQYLNRFRQSTKTTQLYRVANETGKAWFTERDTRGYFSYVNTGEFARQDDAYQISTLPLTAEQSQRLWIQRDYFHLLREQMEISEMSIDKAAIHYGEISLDVYPDSINTEYEYNDQLGLYKKESNHV
>NC_006369.1|WP_011216752.1|3234733_3235702_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MEILTDLKAILHSKRANIYYLEKCRIMQKDGRVLYLTEAKNENQYWNIPIANTTCLLLGTGTSITQAAMRMLAQAGVLVGFCGGGGTPLLMANEVEWLTPQSEYRPTEYMQGWMKFWFDEQKRLYAAKQFQLSRIEYLRVHWKKSRDLAAEGFNSDDLQPELLSSELKIKKAKEVVKLMQNEAELTKQLYRYAANRTQYGKFIREREAIDKANIFLNHGNYLAYGLAATTLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDALILPWAFICAKENSSEQEFRQQCLQAFIDHKALDYMFEQVKAMALNTDWESENSEENLL
>NC_006369.1|WP_011216749.1|3233250_3233541_-|helix-turn-helix-domain-containing-protein
MDKKLFERLYESMTQMNEIIDGERVPSREFVVDAVHIKEIRKKTGLTQEKFCHLIDVNIGTLRNWEQGRREPTGPAKALLRAINKDPEHVLAALAG
>NC_006369.1|WP_011216748.1|3232769_3232961_+|hypothetical-protein
MRNKDEKAKEVATDSRCAESNRLTHLITGAILADNCFFPNGAYSIKPMVSSPQPPQEKTTPSM
>NC_006369.1|WP_011216747.1|3231605_3232502_-|hypothetical-protein
MKDKTIPSPDAKSFNKKEFSENVAKGAIVGATSTTMTFGLFDKPLAIATKASSEVAQHPWRGIKSLFAGALNGSFSTSWNNSLYAQAYRAYLEHPVKGYPVALLNSCLKNVVFFPAKYGSERALYALSGNEQQAKNYSGFLAGLMTVYLTAPISVVKARLMTNVPLNTLSLKRLGSGVNAIAMRDCIQYGIYFNAKERLNEKIGDGVMAGGIAGIVGYVFSNPLSVIGLNQKTAVESVNIPNMAKRIYQANGVKGFYPLVGLAAWGMFARGVAIHQGTKLYESLQEKEAYGRPTRNRE
>NC_006369.1|WP_011216746.1|3229720_3231208_+|lpg2912-family-Dot/Icm-T4SS-effector
MSYSKIDVLERKWSSLEAIVKSYTDPVEYHLPEIKKLMTAEFVVDFSSHAIYLHTEYVHRFTQQLINLRNTSPNDERLVYIHQLWTDLLNCRNQNPLKIKHHKKLDGECTFNFSLKMMEGKPYDFKEVQILDPNNTAEFNKAMGEIKRIDSLAHGANFGDLPFIGDIVLSSMLHYKETICFIAKDKNDEVIGYCWGMMLRDIPAGEKDKVNVFWVMNLAKHPDFYDPNIKVGEVLRQHLANTLSKNPDCHFLGYEHVLNHNFHLAIVDGGVPKKEETISIGQNQYQAKSLVKYEPLKMQYDRKHIIKTNNHQYPYPKVDVIKSNFFTALWYAAPTAFDFILGGMLIYGRAYYQQWTHSMLGQPVTHRIEKPISQEQQICDMNILKRIILSDVWGQQGTTLFFDACIPNTIQKLQQLVKEDQIEFASLQQCVAKSGWALCRSKLTAYFYFAITQSQYPSAAINLLIQNDMTPKKWIELISEERQIFAQQSSERASI
>NC_006369.1|WP_011216759.1|3248250_3248754_-|hypothetical-protein
MIKIFIYLGLLLSSNLLMAKPLSQLDSANLAPCFNIEQAERIGKQINKLLQHEFCEENINPKKFASISHNILPKIMTETFLGVTPPENWQQLSNDIIKNCITNKNLCKKAARKELEECIKPKIPLILIQFGPWFAQNCPQLNKSLIEQWPNKQTILKKIINENKSVE
>NC_006369.1|WP_011216760.1|3248863_3249910_-|FAD-dependent-oxidoreductase
MKHKSFQWSVVGAGPAGIAAVGKLLDYGIAPSEILWIDPHFKVGDFGQLWRHVSSNTTVKLFSSFLHAANSFSYKKAPSTFRLNNLDPDNTCLLSDVAEPLQWVTSVLVNQVIAEETVIHSLSLSGGCWTLCSDTQQYRAKNVILATGAVPSSLNCPGVNVVPFEIAIDKQRLASFVDTNETYGVFGSSHSAIMILRSLIELGVKKVINFYRSPCRYAINMGNWILFDNTGLKGDTAAWARKHIDGVLPANLVRYYPSELNIARHLPECDKVIYAVGFERRKNMIIDNYEHVTPNPHVGIIGPGLFGLGIAYPELNVDPFGTVEHQVGLWKFMVYLCKVLPVWFKYPA
>NC_006369.1|WP_011216761.1|3250214_3251177_-|lytic-murein-transglycosylase
MKKWGLAIVALMLFNQMTYASQSWNQWVAGVREEALQQGIPPGLFDEAFAGIHEPSRKIKGFLRSQPEHRLTFMKYRNTRADNYRIVIGRKEYKRNKEILEEIAQQYGVNPCFIVSFWGMETSYGSYMGNFPVINALATLAYDSNRKDFFRKELFLALHILKGGHVSLADFKGEWAGASGQPQFLPSSWVKYAVDYDGDGRKDIWKSKPDVFASIANYMKQNGWQAGEPWAIQVKLPAKFDMKLEGKSIVKPVSEWNALGVRTESGEPLPYQNLQASIVQPYGGPTFLAFPNYKMILRYNNSIYYAGAIGYMADKICQGQ
>NC_006369.1|WP_011216762.1|3251744_3252164_+|nucleotidyltransferase-substrate-binding-protein
MTNIDVRWQQRLNNYARALQQLSLAVNLAQTRPLSDLEKQGLIQAFEFTHELAWNVMKDYFFFQGNSAITGSRDATRESFNKGLIKEGEIWMEMIKSRNQTSHTYNQSVADEIVKNIINSYHTSFQAFLEKMQGLKEHE
>NC_006369.1|WP_011216763.1|3252156_3252483_+|nucleotidyltransferase-domain-containing-protein
MNEQLNHLYGLPSHAIEALKCVFKEYPQIDNAILYGSRAKGTYHQGSDIDLCLTGNLLGITELLSIENKIDDLLLPWKVDISLKHTIDNPDLLEHIERAGILFYTKES
>NC_006369.1|WP_011216764.1|3252639_3253833_-|ABC-transporter-permease
MNFLNHCQQALVNLTASKLRSLLAVLGILVGTAAVVALISCGQLATEKALEQFKALGTDLLAVSVYQKVPSKSHSESDSLTIDQWQQIAERIPYVLRIAPYSTAYQTLSFNGKVMQGAVIGADESLADIIHVTLTQGHFVSFLDSFEHFCVIGDSLAQQIKEITLDDPIGKQLRIGQSLYTIIGVAERWKENGFFNEDINQAVIIPLAGMSLVSKDAKINNAVLLLKPDSPIDEVINEIKEIINSQAPKLSVFPRSAKQIIASMENQGRIFTLLLAVIGGISLLVGGIGVMNVMLVSVSERKKEIGIRKAVGAKNREIQALFLVESVMLSLLGGVLGVVLGLIFTRIVAYFSDWTFTIYLLPPIAGFLVSAATGIFFGFYPARRASKLEPMVSLRSE
>NC_006369.1|WP_011216765.1|3253829_3254519_-|ABC-transporter-ATP-binding-protein
MIDRPLIQLSDLVKTYHLEGISTTVLKAVSLTVNEGDLLAIVGASGSGKSTLMNIIGLLDKPDAGTYTLNNRNVASLSDDEAADLRNQNIGFVFQQFNLLPRFTAMQNVALPLTYRGVNPTLIKEKVEQALDKVGMRQYIRHRPTQLSGGQQQRVAIARALVTDPQVILADEPTGALDSRTGSEVMNLFLALHQEGRTIIMVTHDEHVAAQCKRRITLADGAIIAESGQ
>NC_006369.1|WP_011216766.1|3254511_3255657_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLTSPMEAVVETMHFHYGQMVKKGEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGTEELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLEKMDDKNTQNISNLSLADFDKVRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVEIDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSLTPEQQSWIKVGMSASIELNVESNNQLLIPIAAVKREKGSSVVHVQLAKGKVQKRMITTGAAQADSVVVESGLKSGDVVVYD
>NC_006369.1|WP_011216767.1|3255653_3257282_-|TolC-family-protein
MKFLNKSTALLPVIILSGLISFHASSAKTSSNADNSLYSWTENPSAEAQRVEQAEERLKAAIANPEYMLKNWIELPTSPESKKKTRHQLTIREAILLALRYNPNIQNAELDRIIQRYQLRLANNEFELQYALGASGVVQKSTFEGIGSSTNHSFLASPELDLKTKIGTKASVSIDNNVSTNNSYNPVLNLSITQPLLRGFGKSANEAKLLDAIDKEWLNKLSLQQSVMDQITQVITAYRALILSGNNLENQRLQLEEARKSYRINEKKIAAGQLEPTGNIQQSYQIESLSLMVEQGENDFKLASQELLQMIGLDPDLHISVPSDVTIKEIIVPDLQESIAIALSHNTQYLAQKMALRADERAYTVAKNQQLWQLDLAGTVQGGAVNDVTGTSSGLSSIYNGNNITESARVTLTIPLNDIGRRSQLINAKVQLEKDKINLIAAKRALITSVTNTINNIQSLAKRYELAQKQVKLAEQSYALEKKKQQAGISSALDVNNTQNQLIQAQSGLIGAKIAYLNQLSALQRILGTTLDYWQIKLRYGG
>NC_006369.1|WP_011216768.1|3257325_3258156_-|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MPDYAIGDIQGCYDPLQRLLELIDFNEKDDCLWFVGDLVNRGPDSLAVLRFIYSLPVKPKITLGNHDLHLLGLLFGGQPWKGHDDTLEEVMLADDGEELGHWLRKQSLLCRSSELNIVMCHAGIAPLWDLSKAVGLANELEAVLSGDSYHEFFAQMYGNKPDIWSDDLVGLDRLRVITNYFTRMRYCDAHGRLDLGYKGTLSKAPNHLYPWFEVPCRKEIEMDIVFGHWAALMGRSSHPRIHAIDTGCLWGGQLTALRLQDRQRFSVPGYGVSRFE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006369_1	1.2\|2608290\|46\|NC_006369\|CRISPRCasFinder	2608290-2608335	46	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	257659-257704	2	0.957
NC_006369_2	2.17\|3244116\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244116-3244147	32	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	20873-20904	2	0.938
NC_006369_2	2.23\|3244476\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244476-3244507	32	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	25183-25214	2	0.938
NC_006369_2	2.16\|3244055\|33\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244055-3244087	33	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	19977-20009	5	0.848
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	FN667788	Campylobacter phage CP220, complete genome	12917-12948	6	0.812
NC_006369_2	2.17\|3244116\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244116-3244147	32	NC_028886	Bacillus phage phi4B1, complete genome	20314-20345	6	0.812
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	106922-106953	6	0.812
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NC_013164	Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence	109614-109645	7	0.781
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_CP033927	Chryseobacterium joostei strain DSM 16927 plasmid unnamed, complete sequence	4127-4158	7	0.781
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NC_019507	Campylobacter phage CP21, complete genome	106769-106800	7	0.781
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	MT932329	Campylobacter phage F379, complete genome	169660-169691	7	0.781
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	HE815464	Campylobacter phage CP21 complete sequence	106769-106800	7	0.781
NC_006369_2	2.3\|3243275\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243275-3243306	32	MN693967	Marine virus AFVG_250M992, complete genome	3939-3970	7	0.781
NC_006369_2	2.8\|3243575\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243575-3243606	32	MN693762	Marine virus AFVG_250M302, complete genome	30004-30035	7	0.781
NC_006369_2	2.8\|3243575\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243575-3243606	32	MN694601	Marine virus AFVG_250M301, complete genome	30003-30034	7	0.781
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	643709-643740	7	0.781
NC_006369_2	2.13\|3243875\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243875-3243906	32	NZ_CP015635	Borrelia turicatae strain BTE5EL plasmid lp44	35291-35322	7	0.781
NC_006369_2	2.24\|3244536\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244536-3244567	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	444237-444268	7	0.781
NC_006369_2	2.30\|3244896\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244896-3244927	32	NZ_CP033215	Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence	5966-5997	7	0.781
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NZ_CP044508	Chryseobacterium sp. strain SNU WT7 plasmid unnamed1, complete sequence	61282-61313	7	0.781
NC_006369_2	2.41\|3245556\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245556-3245587	32	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	1062219-1062250	7	0.781
NC_006369_2	2.47\|3245917\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245917-3245948	32	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	387218-387249	7	0.781
NC_006369_2	2.47\|3245917\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245917-3245948	32	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	401169-401200	7	0.781
NC_006369_2	2.48\|3245977\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245977-3246008	32	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	30632-30663	7	0.781
NC_006369_3	3.7\|3247032\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3247032-3247063	32	AP018320	Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome	215093-215124	7	0.781
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	MK496762	Capybara microvirus Cap3_SP_315, complete genome	1128-1159	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP050095	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence	115164-115195	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NC_008381	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence	313004-313035	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	163142-163173	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	105247-105278	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	282828-282859	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	193794-193825	8	0.75
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	JQ177062	Bdellovibrio phage phi1422, complete genome	21141-21172	8	0.75
NC_006369_2	2.15\|3243995\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243995-3244026	32	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	213833-213864	8	0.75
NC_006369_2	2.18\|3244176\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244176-3244207	32	NC_004775	Enterobacteria phage epsilon15, complete genome	30427-30458	8	0.75
NC_006369_2	2.18\|3244176\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244176-3244207	32	NC_019691	Synechococcus sp. PCC 7502 plasmid pSYN7502.01, complete sequence	24966-24997	8	0.75
NC_006369_2	2.18\|3244176\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244176-3244207	32	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	77715-77746	8	0.75
NC_006369_2	2.18\|3244176\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244176-3244207	32	MN694416	Marine virus AFVG_250M895, complete genome	40579-40610	8	0.75
NC_006369_2	2.18\|3244176\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244176-3244207	32	NC_022775	Lactobacillus phage phiJB, complete genome	2839-2870	8	0.75
NC_006369_2	2.23\|3244476\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244476-3244507	32	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	23201-23232	8	0.75
NC_006369_2	2.25\|3244596\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244596-3244627	32	MG945363	UNVERIFIED: Microviridae sp. isolate 3125-1711, complete genome	1758-1789	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	1745507-1745538	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	366517-366548	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.28\|3244776\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244776-3244807	32	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	31739-31770	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	41497-41528	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	55535-55566	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	129039-129070	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	143081-143112	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	4629-4660	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	18670-18701	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	3775-3806	8	0.75
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	17815-17846	8	0.75
NC_006369_2	2.38\|3245376\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245376-3245407	32	NZ_CP020699	Sulfitobacter sp. D7 plasmid p5SUD7, complete sequence	59706-59737	8	0.75
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NZ_CP020745	Bacillus mycoides strain Gnyt1 plasmid unnamed2, complete sequence	109782-109813	8	0.75
NC_006369_2	2.45\|3245797\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245797-3245828	32	MN694181	Marine virus AFVG_250M537, complete genome	23442-23473	8	0.75
NC_006369_3	3.1\|3246671\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3246671-3246702	32	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	182406-182437	8	0.75
NC_006369_2	2.9\|3243635\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243635-3243666	32	NZ_CP013486	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL128, complete sequence	10396-10427	9	0.719
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP018232	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence	211726-211757	9	0.719
NC_006369_2	2.12\|3243815\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243815-3243846	32	MT179807	Escherichia phage vB_EcoM_IME537, complete genome	51335-51366	9	0.719
NC_006369_2	2.18\|3244176\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244176-3244207	32	NZ_CP021236	Pontibacter actiniarum strain DSM 19842 plasmid unnamed, complete sequence	169898-169929	9	0.719
NC_006369_2	2.23\|3244476\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244476-3244507	32	NC_021336	Bacillus phage MG-B1, complete genome	7928-7959	9	0.719
NC_006369_2	2.23\|3244476\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244476-3244507	32	MN938931	Streptococcus phage D4446, complete genome	21935-21966	9	0.719
NC_006369_2	2.27\|3244716\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244716-3244747	32	CP000617	Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence	212454-212485	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP018235	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed7, complete sequence	65616-65647	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	236116-236147	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1090582-1090613	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NC_014111	Xylella fastidiosa plasmid pXF-RIV11, complete sequence	19013-19044	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NC_014113	Xylella fastidiosa plasmid pXF-RIV19, complete sequence	18280-18311	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP006739	Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence	6996-7027	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP048285	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence	380-411	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NC_017561	Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence	14729-14760	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP022669	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence	3826-3857	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	NZ_CP022669	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence	318507-318538	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	MN813698	Gordonia phage Volt, complete genome	66726-66757	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	MH479925	Gordonia phage Ronaldo, complete genome	66562-66593	9	0.719
NC_006369_2	2.33\|3245076\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245076-3245107	32	MK919478	Gordonia phage Ziko, complete genome	67030-67061	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NZ_KU882686	Staphylococcus lugdunensis strain Tlug63N-4 plasmid pT63N, complete sequence	16758-16789	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NZ_KR230047	Staphylococcus epidermidis strain SP1 plasmid pSP01, complete sequence	54818-54849	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NZ_CP042965	Bartonella krasnovii strain OE 1-1 plasmid pOE11-1, complete sequence	1900-1931	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	MK721197	Enterococcus phage vB_EfaP_Efmus2, complete genome	11742-11773	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NC_049939	Enterococcus phage vB_EfaP_Ef7.3, complete genome	12098-12129	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	LT630001	Enterococcus phage Idefix genome assembly, chromosome: IDF	11326-11357	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	MK721195	Enterococcus phage vB_EfaP_Efmus1, complete genome	11310-11341	9	0.719
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NC_049936	Enterococcus phage vB_EfaP_Efmus3, complete genome	11661-11692	9	0.719
NC_006369_2	2.45\|3245797\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245797-3245828	32	AP013375	Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S29-C4	9358-9389	9	0.719
NC_006369_3	3.3\|3246791\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3246791-3246822	32	MG869625	Polaromonas sp. W11N plasmid pW11NP2, complete sequence	48097-48128	9	0.719
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_CP054369	Escherichia coli strain SCU-115 plasmid pSCU-115-1, complete sequence	137519-137550	10	0.688
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_CP012377	Escherichia coli strain GE3 isolate human faeces plasmid pGE3, complete sequence	95658-95689	10	0.688
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_CP050647	Escherichia coli strain PapM-36-2 plasmid pIncFIB, complete sequence	96526-96557	10	0.688
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_CP010126	Escherichia coli strain C8 plasmid A, complete genome	70749-70780	10	0.688
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_CP031323	Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_2, complete sequence	32793-32824	10	0.688
NC_006369_2	2.10\|3243695\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243695-3243726	32	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	171884-171915	10	0.688
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	NC_021796	Cellulophaga phage phi38:1, complete genome	17341-17372	10	0.688
NC_006369_2	2.29\|3244836\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244836-3244867	32	KC821612	Cellulophaga phage phi40:1, complete genome	17341-17372	10	0.688
NC_006369_2	2.30\|3244896\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244896-3244927	32	NZ_CP014200	Escherichia coli strain MRE600 plasmid pMRE600-2, complete sequence	35145-35176	10	0.688
NC_006369_2	2.30\|3244896\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3244896-3244927	32	NZ_CP042885	Escherichia coli O10:H32 strain NMBU-W12E19 plasmid pNMBU-W12E19_01, complete sequence	91975-92006	10	0.688
NC_006369_2	2.37\|3245316\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245316-3245347	32	MN180248	UNVERIFIED: Wolbachia phage WO isolate Seq1WORi_AMD1 genomic sequence	4882-4913	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NZ_CP021525	Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1	89499-89530	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554775	Lactococcus phage AM11, complete genome	9559-9590	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554773	Lactococcus phage AM8, complete genome	9559-9590	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554768	Lactococcus phage AM1, complete genome	9558-9589	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554769	Lactococcus phage AM2, complete genome	9558-9589	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554772	Lactococcus phage AM5, complete genome	10942-10973	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554770	Lactococcus phage AM3, complete genome	9559-9590	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554777	Lactococcus phage LW81, complete genome	10701-10732	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NC_049856	Lactococcus phage AM4, complete genome	10941-10972	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	NC_049856	Lactococcus phage AM4, complete genome	117486-117517	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554776	Lactococcus phage AM12, complete genome	9539-9570	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	MK721183	Enterococcus phage vB_EfaP_Ef7.2, complete genome	11715-11746	10	0.688
NC_006369_2	2.39\|3245436\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245436-3245467	32	KY554774	Lactococcus phage AM9, complete genome	9558-9589	10	0.688
NC_006369_2	2.40\|3245496\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245496-3245527	32	NC_007105	Bacillus cereus E33L plasmid pE33L54, complete sequence	41208-41239	10	0.688
NC_006369_2	2.40\|3245496\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245496-3245527	32	NZ_CP009966	Bacillus cereus E33L plasmid pBCO_2, complete sequence	41777-41808	10	0.688
NC_006369_2	2.45\|3245797\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245797-3245828	32	NZ_CP023282	Nostoc sp. CENA543 plasmid pCENA543b, complete sequence	1781-1812	10	0.688
NC_006369_2	2.48\|3245977\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245977-3246008	32	MN693140	Marine virus AFVG_25M121, complete genome	1139-1170	10	0.688
NC_006369_2	2.1\|3243155\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3243155-3243186	32	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	61229-61260	11	0.656
NC_006369_2	2.38\|3245376\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245376-3245407	32	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	39408-39439	11	0.656
NC_006369_2	2.47\|3245917\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245917-3245948	32	NZ_LR215007	Mycoplasma conjunctivae strain NCTC10147 plasmid 11	591-622	11	0.656
NC_006369_2	2.47\|3245917\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245917-3245948	32	LR214964	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10	1858-1889	11	0.656
NC_006369_2	2.47\|3245917\|32\|NC_006369\|PILER-CR,CRISPRCasFinder,CRT	3245917-3245948	32	LR214969	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 15	1771-1802	11	0.656

1. spacer 1.2|2608290|46|NC_006369|CRISPRCasFinder matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 2, identity: 0.957

atggtgaattaatgcaaggaaatgcaataataaatttatttttatc	CRISPR spacer
atggtgaattaatgcaaataaatgcaataataaatttatttttatc	Protospacer
*****************. ***************************

2. spacer 2.17|3244116|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 2, identity: 0.938

ataacagcgcaagagattaagggatagataaa	CRISPR spacer
ataactgctcaagagattaagggatagataaa	Protospacer
***** ** ***********************

3. spacer 2.23|3244476|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 2, identity: 0.938

tgattggtttctttttcttgactgttctttga	CRISPR spacer
atattggtttctttttcttgactgttctttga	Protospacer
  ******************************

4. spacer 2.16|3244055|33|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 5, identity: 0.848

caccattaacagttcctgcgagtaccggcacca	CRISPR spacer
cattgttaactgttcctgcgagtacaggcacca	Protospacer
**...***** ************** *******

5. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 6, identity: 0.812

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
tttcaaaaaactttaagttattttattatata	Protospacer
***.*************** **** * * *.*

6. spacer 2.17|3244116|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_028886 (Bacillus phage phi4B1, complete genome) position: , mismatch: 6, identity: 0.812

ataacagcgcaagagattaagggatagataaa	CRISPR spacer
acaagaaagcaagagattaagggagagatgaa	Protospacer
*.** *. **************** ****.**

7. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 6, identity: 0.812

gcttgctgttgctttgcttgtgcg--tattgcac	CRISPR spacer
tcttgctgtcgctttgcttctgcgaccattgc--	Protospacer
 ********.********* ****  .*****

8. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_013164 (Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence) position: , mismatch: 7, identity: 0.781

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
ttttaaaaaacttgaagtttttttgggataag	Protospacer
************* *****.****  ** * .

9. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033927 (Chryseobacterium joostei strain DSM 16927 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
ttttcaaaaactttcagttctttttcaaacct	Protospacer
**** ********* *********...** *

10. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 7, identity: 0.781

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
attcaaaaaactttaagttattttattatata	Protospacer
 **.*************** **** * * *.*

11. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.781

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
attcaaaaaactttaagttattttattatata	Protospacer
 **.*************** **** * * *.*

12. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 7, identity: 0.781

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
attcaaaaaactttaagttattttattatata	Protospacer
 **.*************** **** * * *.*

13. spacer 2.3|3243275|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN693967 (Marine virus AFVG_250M992, complete genome) position: , mismatch: 7, identity: 0.781

aataaacaaaatttggagttaaatgtgaatga	CRISPR spacer
aataaataaaattttgagttaaatataatggt	Protospacer
******.******* *********.*.*  *

14. spacer 2.8|3243575|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN693762 (Marine virus AFVG_250M302, complete genome) position: , mismatch: 7, identity: 0.781

tgaaaaaacattacacaatgattctactatac-	CRISPR spacer
gttaaaaatattacacaaggattctac-ataga	Protospacer
   *****.********* ******** ***

15. spacer 2.8|3243575|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN694601 (Marine virus AFVG_250M301, complete genome) position: , mismatch: 7, identity: 0.781

tgaaaaaacattacacaatgattctactatac-	CRISPR spacer
gttaaaaatattacacaaggattctac-ataga	Protospacer
   *****.********* ******** ***

16. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031226 (Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence) position: , mismatch: 7, identity: 0.781

atcctaagcacaagctcgcgcactgtagccgt-	CRISPR spacer
ttcctcagcacaagctcgcgctct-tgaccgcc	Protospacer
 **** *************** ** *..***.

17. spacer 2.13|3243875|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015635 (Borrelia turicatae strain BTE5EL plasmid lp44) position: , mismatch: 7, identity: 0.781

tctttaacttctctaattatagtactgttatc	CRISPR spacer
tctttaacttctttaataatagtattaacgtc	Protospacer
************.**** ******.*. ..**

18. spacer 2.24|3244536|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tctgatagcgcaacggcactggccacccagca	CRISPR spacer
gccggccgcgccacggcactggccaccgagca	Protospacer
 *.*.. **** *************** ****

19. spacer 2.30|3244896|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tctttgaaatgacaaaaaggtattatgagtac	CRISPR spacer
tcattgaaattacaaaaaggtattacgctatc	Protospacer
** ******* **************.*    *

20. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044508 (Chryseobacterium sp. strain SNU WT7 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tataagtcaaaattctctatttcatataaagt	Protospacer
**.***********.******** *  * **.

21. spacer 2.41|3245556|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 7, identity: 0.781

ttgcagcgaaggagaagtgccataatgtacaa	CRISPR spacer
ttgcagcgaaggagacatgccataaggaagcc	Protospacer
*************** .******** * *

22. spacer 2.47|3245917|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 7, identity: 0.781

taatgcaattatcatgaataat--actatgcact	CRISPR spacer
taatgcaattataatgaatgataaacttttta--	Protospacer
************ ******.**  *** * .*

23. spacer 2.47|3245917|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 7, identity: 0.781

taatgcaattatcatgaataat--actatgcact	CRISPR spacer
taatgcaattataatgaatgataaacttttta--	Protospacer
************ ******.**  *** * .*

24. spacer 2.48|3245977|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 7, identity: 0.781

attacgacaacatagaaggcataaccacaagg----	CRISPR spacer
attacaacaacatagaaggcat----actagactta	Protospacer
*****.****************    ** **.

25. spacer 3.7|3247032|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.781

aatataaagcatcgggaaaatgtagacaaaat	CRISPR spacer
atattgaagcataggggaaatgtagacaaaag	Protospacer
*   *.****** ***.**************

26. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MK496762 (Capybara microvirus Cap3_SP_315, complete genome) position: , mismatch: 8, identity: 0.75

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
tttgaaaaaactttatgttctttcaaataaaa	Protospacer
*** *********** *******.  . ** *

27. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 8, identity: 0.75

--atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcct--ccacaagcgcgcgcactgttgccgc	Protospacer
  . ***   ******* ********** ****.

28. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 8, identity: 0.75

--atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcct--ccacaagcgcgcgcactgttgccgc	Protospacer
  . ***   ******* ********** ****.

29. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 8, identity: 0.75

--atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcct--ccacaagcgcgcgcactgttgccgc	Protospacer
  . ***   ******* ********** ****.

30. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 8, identity: 0.75

--atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcct--ccacaagcgcgcgcactgttgccgc	Protospacer
  . ***   ******* ********** ****.

31. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 8, identity: 0.75

--atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcct--ccacaagcgcgcgcactgttgccgc	Protospacer
  . ***   ******* ********** ****.

32. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 8, identity: 0.75

--atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcct--ccacaagcgcgcgcactgttgccgc	Protospacer
  . ***   ******* ********** ****.

33. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to JQ177062 (Bdellovibrio phage phi1422, complete genome) position: , mismatch: 8, identity: 0.75

---atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
gatacccc---cactcgctcgcgcactgtagccga	Protospacer
   *.**.   ***  ******************

34. spacer 2.15|3243995|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 8, identity: 0.75

atctgcttcataaattaaaaatggagaactag	CRISPR spacer
acactgttcaaaaattaaaaatggagaattat	Protospacer
*. .  **** *****************.**

35. spacer 2.18|3244176|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_004775 (Enterobacteria phage epsilon15, complete genome) position: , mismatch: 8, identity: 0.75

ttctcaacacagtcttttttgccatctcttca	CRISPR spacer
ggcggatcaccgtcttttttgccatctcatcg	Protospacer
  *  * *** ***************** **.

36. spacer 2.18|3244176|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_019691 (Synechococcus sp. PCC 7502 plasmid pSYN7502.01, complete sequence) position: , mismatch: 8, identity: 0.75

ttctcaacacagtcttttttgccatctcttca	CRISPR spacer
atcccttaccagtattctttgccatctcttca	Protospacer
 **.*    **** **.***************

37. spacer 2.18|3244176|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 8, identity: 0.75

-----ttctcaacacagtcttttttgccatctcttca	CRISPR spacer
gctgtctcccaa-----tcttttttaccatctcttca	Protospacer
     .**.***     ********.***********

38. spacer 2.18|3244176|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN694416 (Marine virus AFVG_250M895, complete genome) position: , mismatch: 8, identity: 0.75

ttctcaacacagtcttttttgccatctcttca	CRISPR spacer
tccggaacactgtctttttagccatctcattc	Protospacer
*.*  ***** ******** ******** *.

39. spacer 2.18|3244176|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_022775 (Lactobacillus phage phiJB, complete genome) position: , mismatch: 8, identity: 0.75

---ttctcaacacagtcttttttgccatctcttca	CRISPR spacer
tgagtctcag---aatcttttttgccatctcttat	Protospacer
    *****.   *.******************

40. spacer 2.23|3244476|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 8, identity: 0.75

tgattggtttctttttcttgactgttctttga	CRISPR spacer
gaagttttttctatttcttgactgttttttgt	Protospacer
 .* *  ***** *************.****

41. spacer 2.25|3244596|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MG945363 (UNVERIFIED: Microviridae sp. isolate 3125-1711, complete genome) position: , mismatch: 8, identity: 0.75

agacaagactggaacaatatctccagcctgta	CRISPR spacer
aagaaagaaaggaacaatatctccagcattaa	Protospacer
*.. ****  ***************** *  *

42. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

43. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

44. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

45. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

46. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

47. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

48. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

49. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

50. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

51. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

52. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

53. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

54. spacer 2.28|3244776|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gcttgctgttgctttgcttgtgcgtattgcac	CRISPR spacer
gatgcgcgttgctttgctggtgcgtactgccc	Protospacer
* *   .*********** *******.*** *

55. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

56. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

57. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

58. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

59. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

60. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

61. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

62. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

atttgaaaaatctatccctaaatct-tatgtac	CRISPR spacer
atttgaaaaatcaatacctaaattcggaaata-	Protospacer
************ ** *******..  * .**

63. spacer 2.38|3245376|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020699 (Sulfitobacter sp. D7 plasmid p5SUD7, complete sequence) position: , mismatch: 8, identity: 0.75

atattctgtttgaccaaagcaatcatttgaat	CRISPR spacer
ccattctgtttcgccaaagcaatcatgagggt	Protospacer
 .********* .*************  *..*

64. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020745 (Bacillus mycoides strain Gnyt1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tacaagtcaaaattttctatttcaacaatcat	Protospacer
***********************  ..*. ..

65. spacer 2.45|3245797|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN694181 (Marine virus AFVG_250M537, complete genome) position: , mismatch: 8, identity: 0.75

actacattctttaatacttgtgccatttctta	CRISPR spacer
aagtttacctttaatacttctgccatttctta	Protospacer
*   .  .*********** ************

66. spacer 3.1|3246671|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 8, identity: 0.75

agtaccacggcacaaacaccgcctgaaagttg	CRISPR spacer
agtaccacggcaaaaacatcgccgatgtgctg	Protospacer
************ *****.**** . . *.**

67. spacer 2.9|3243635|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013486 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL128, complete sequence) position: , mismatch: 9, identity: 0.719

attacacatatgacacttaatcattatcaatc	CRISPR spacer
aatacacatatcacacttactcatttgacctt	Protospacer
* ********* ******* *****     *.

68. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018232 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

----atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ccggcttc----cacaagcgcgcgcactgttgccgc	Protospacer
     *.*    ******* ********** ****.

69. spacer 2.12|3243815|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MT179807 (Escherichia phage vB_EcoM_IME537, complete genome) position: , mismatch: 9, identity: 0.719

tgctgaatcaaattgacgcctataagttaaat	CRISPR spacer
tgctgaaacaatttgacgcctatcattcggca	Protospacer
******* *** *********** * *...

70. spacer 2.18|3244176|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021236 (Pontibacter actiniarum strain DSM 19842 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ttctcaacacagtcttttttgccatctcttca	CRISPR spacer
tagttttcacagtcttttgagccatctctttc	Protospacer
*  *.  ***********  **********.

71. spacer 2.23|3244476|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_021336 (Bacillus phage MG-B1, complete genome) position: , mismatch: 9, identity: 0.719

tgattggtttctttttcttgactgttctttga	CRISPR spacer
ccctttattgctttttgttgactgttcttttt	Protospacer
.  ** .** ****** *************

72. spacer 2.23|3244476|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN938931 (Streptococcus phage D4446, complete genome) position: , mismatch: 9, identity: 0.719

tgattggtttctttttcttgactgttctttga	CRISPR spacer
cggttggttacattttcttgactgttttcaac	Protospacer
.*.****** * **************.*. .

73. spacer 2.27|3244716|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to CP000617 (Burkholderia vietnamiensis G4 plasmid pBVIE01, complete sequence) position: , mismatch: 9, identity: 0.719

aggcagtcggagagcaggaaaacacggaaatc	CRISPR spacer
aaaacatcggcgagcagaaaaacacggaatcc	Protospacer
*..  .**** ******.*********** .*

74. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018235 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.719

gtcca---tccttgcgtttccttccttgtcgtatg	CRISPR spacer
---cagacgccttgcgattccttcctcgtcgtcgt	Protospacer
   **    ******* *********.*****

75. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcca---tccttgcgtttccttccttgtcgtatg	CRISPR spacer
---cagacgccttgcgattccttcctcgtcgtcgt	Protospacer
   **    ******* *********.*****

76. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
atctcggtctgcgtttccttccttgtggtctg	Protospacer
.**.   ..***************** ** **

77. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_014111 (Xylella fastidiosa plasmid pXF-RIV11, complete sequence) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
cggaatccttgcgtctccttccttttcttctc	Protospacer
    **********.********* ** * *

78. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_014113 (Xylella fastidiosa plasmid pXF-RIV19, complete sequence) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
cggaatccttgcgtctccttccttttcttctc	Protospacer
    **********.********* ** * *

79. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006739 (Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
cggaatccttgcgtctccttccttttcttctc	Protospacer
    **********.********* ** * *

80. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048285 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence) position: , mismatch: 9, identity: 0.719

gtccat-ccttgcgtttccttccttgtcgtatg	CRISPR spacer
-ccgacgccttgcggttccttcctcgtcgtcgt	Protospacer
 .* *. ******* *********.*****

81. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_017561 (Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
cggaatccttgcgtctccttccttttcttctc	Protospacer
    **********.********* ** * *

82. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022669 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence) position: , mismatch: 9, identity: 0.719

gtcca---tccttgcgtttccttccttgtcgtatg	CRISPR spacer
---cagacgccttgcgattccttcctcgtcgtcgt	Protospacer
   **    ******* *********.*****

83. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022669 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence) position: , mismatch: 9, identity: 0.719

gtcca---tccttgcgtttccttccttgtcgtatg	CRISPR spacer
---cagacgccttgcgattccttcctcgtcgtcgt	Protospacer
   **    ******* *********.*****

84. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN813698 (Gordonia phage Volt, complete genome) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
caatagccttgcgtttcctttcttttcgtgtt	Protospacer
   .* **************.*** ****.*

85. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MH479925 (Gordonia phage Ronaldo, complete genome) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
caatagccttgcgtttcctttcttttcgtgtt	Protospacer
   .* **************.*** ****.*

86. spacer 2.33|3245076|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MK919478 (Gordonia phage Ziko, complete genome) position: , mismatch: 9, identity: 0.719

gtccatccttgcgtttccttccttgtcgtatg	CRISPR spacer
caatagccttgcgtttcctttcttttcgtgtt	Protospacer
   .* **************.*** ****.*

87. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU882686 (Staphylococcus lugdunensis strain Tlug63N-4 plasmid pT63N, complete sequence) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
ataaagtcaatattttcaatttcttttatggg	Protospacer
   ******* ****** ******** *..*

88. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KR230047 (Staphylococcus epidermidis strain SP1 plasmid pSP01, complete sequence) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
ataaagtcaatattttcaatttcttttatggg	Protospacer
   ******* ****** ******** *..*

89. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042965 (Bartonella krasnovii strain OE 1-1 plasmid pOE11-1, complete sequence) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tctgatacaaaattatgtatttctttgacatt	Protospacer
* ..*  ******* * ************* .

90. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MK721197 (Enterococcus phage vB_EfaP_Efmus2, complete genome) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
aacttccaaaaattttctattgctttgagaga	Protospacer
 **   . ************* ****** **

91. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_049939 (Enterococcus phage vB_EfaP_Ef7.3, complete genome) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
aacttccaaaaattttctattgctttgagaga	Protospacer
 **   . ************* ****** **

92. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to LT630001 (Enterococcus phage Idefix genome assembly, chromosome: IDF) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
aacttccaaaaattttctattgctttgagaga	Protospacer
 **   . ************* ****** **

93. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MK721195 (Enterococcus phage vB_EfaP_Efmus1, complete genome) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
aacttccaaaaattttctattgctttgagaga	Protospacer
 **   . ************* ****** **

94. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_049936 (Enterococcus phage vB_EfaP_Efmus3, complete genome) position: , mismatch: 9, identity: 0.719

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
aacttccaaaaattttctattgctttgagaga	Protospacer
 **   . ************* ****** **

95. spacer 2.45|3245797|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to AP013375 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S29-C4) position: , mismatch: 9, identity: 0.719

actacattctttaatacttgtgccatttctta	CRISPR spacer
taagcattcttaaatacttctgccatttatat	Protospacer
   .******* ******* ******** *

96. spacer 3.3|3246791|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MG869625 (Polaromonas sp. W11N plasmid pW11NP2, complete sequence) position: , mismatch: 9, identity: 0.719

tcttgcggcgcgtctttgtcttccattaattc	CRISPR spacer
gcttgcggggcgtctttgttttccgagcctcc	Protospacer
 ******* **********.****.    *.*

97. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054369 (Escherichia coli strain SCU-115 plasmid pSCU-115-1, complete sequence) position: , mismatch: 10, identity: 0.688

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
gacggaaaaacgttcagttcttttctgacagt	Protospacer
  . .****** ** ************* *

98. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012377 (Escherichia coli strain GE3 isolate human faeces plasmid pGE3, complete sequence) position: , mismatch: 10, identity: 0.688

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
gacggaaaaacgttcagttcttttctgacagt	Protospacer
  . .****** ** ************* *

99. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050647 (Escherichia coli strain PapM-36-2 plasmid pIncFIB, complete sequence) position: , mismatch: 10, identity: 0.688

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
gacggaaaaacgttcagttcttttctgacagt	Protospacer
  . .****** ** ************* *

100. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010126 (Escherichia coli strain C8 plasmid A, complete genome) position: , mismatch: 10, identity: 0.688

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
gacggaaaaacgttcagttcttttctgacagt	Protospacer
  . .****** ** ************* *

101. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031323 (Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_2, complete sequence) position: , mismatch: 10, identity: 0.688

ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
gacggaaaaacgttcagttcttttctgacagt	Protospacer
  . .****** ** ************* *

102. spacer 2.10|3243695|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 10, identity: 0.688

atcctaagcacaagctcgcgcactgtagccgt	CRISPR spacer
ctggcctccacaagcgcgcgcactgttgccgc	Protospacer
 *  .   ******* ********** ****.

103. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_021796 (Cellulophaga phage phi38:1, complete genome) position: , mismatch: 10, identity: 0.688

atttgaaaaatctatccctaaatcttatgtac	CRISPR spacer
ggatgaaaaaactatccctaaaacttccgagg	Protospacer
.  ******* *********** *** .* .

104. spacer 2.29|3244836|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KC821612 (Cellulophaga phage phi40:1, complete genome) position: , mismatch: 10, identity: 0.688

atttgaaaaatctatccctaaatcttatgtac	CRISPR spacer
ggatgaaaaaactatccctaaaacttccgagg	Protospacer
.  ******* *********** *** .* .

105. spacer 2.30|3244896|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014200 (Escherichia coli strain MRE600 plasmid pMRE600-2, complete sequence) position: , mismatch: 10, identity: 0.688

tctttgaaatgacaaaaaggtattatgagtac	CRISPR spacer
aaagtgaaaagacaaaatggtattatgcttct	Protospacer
    ***** ******* *********  * .

106. spacer 2.30|3244896|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042885 (Escherichia coli O10:H32 strain NMBU-W12E19 plasmid pNMBU-W12E19_01, complete sequence) position: , mismatch: 10, identity: 0.688

tctttgaaatgacaaaaaggtattatgagtac	CRISPR spacer
aaagtgaaaagacaaaatggtattatgcttct	Protospacer
    ***** ******* *********  * .

107. spacer 2.37|3245316|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN180248 (UNVERIFIED: Wolbachia phage WO isolate Seq1WORi_AMD1 genomic sequence) position: , mismatch: 10, identity: 0.688

agtcgcaacattcccgattgacaagtaaagac	CRISPR spacer
ggtagcaacattcccgatttacaaagcagagt	Protospacer
.** *************** ****.  *....

108. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021525 (Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
atggtgaaaaaattttctgtttttttgacagt	Protospacer
   . *  **********.***.********.

109. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

110. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

111. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

112. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

113. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tctgcgtcaaacttttctagttctttgattaa	Protospacer
* .. ****** ******* ********. .

114. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

115. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554777 (Lactococcus phage LW81, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattag	Protospacer
* .  ****** ******* ********. .

116. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tctgcgtcaaacttttctagttctttgattaa	Protospacer
* .. ****** ******* ********. .

117. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tctgcgtcaaacttttctagttctttgattaa	Protospacer
* .. ****** ******* ********. .

118. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

119. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MK721183 (Enterococcus phage vB_EfaP_Ef7.2, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
aattttcaaaaattttctattgctttgagaga	Protospacer
 *.   . ************* ****** **

120. spacer 2.39|3245436|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 10, identity: 0.688

tacaagtcaaaattttctatttctttgacagc	CRISPR spacer
tcttcgtcaaacttttctagttctttgattaa	Protospacer
* .  ****** ******* ********. .

121. spacer 2.40|3245496|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_007105 (Bacillus cereus E33L plasmid pE33L54, complete sequence) position: , mismatch: 10, identity: 0.688

atagatgttacgttagaccaaagtcatttggg	CRISPR spacer
ctgctagtgacgtaagaccaaagtcatttcct	Protospacer
 *.   ** **** ***************

122. spacer 2.40|3245496|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009966 (Bacillus cereus E33L plasmid pBCO_2, complete sequence) position: , mismatch: 10, identity: 0.688

atagatgttacgttagaccaaagtcatttggg	CRISPR spacer
ctgctagtgacgtaagaccaaagtcatttcct	Protospacer
 *.   ** **** ***************

123. spacer 2.45|3245797|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023282 (Nostoc sp. CENA543 plasmid pCENA543b, complete sequence) position: , mismatch: 10, identity: 0.688

actacattctttaatacttgtgccatttctta	CRISPR spacer
cttacattcttttaaacttgtgccacaaaaaa	Protospacer
 .********** * **********.     *

124. spacer 2.48|3245977|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to MN693140 (Marine virus AFVG_25M121, complete genome) position: , mismatch: 10, identity: 0.688

attacgacaacatagaaggcataaccacaagg	CRISPR spacer
gatacgatagcatagaaggcataacagaggcg	Protospacer
. *****.*.*************** . .. *

125. spacer 2.1|3243155|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 11, identity: 0.656

-----ttttaaaaaactttaagttcttttctgaaaca	CRISPR spacer
gactataaaaaataactttaagtttttt----aaat-	Protospacer
     *   *** ***********.***    ***.

126. spacer 2.38|3245376|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 11, identity: 0.656

atattctgtttgaccaaagcaatcatttgaat	CRISPR spacer
gacggctgtttgagcaaggcaatcatttctgg	Protospacer
.    ******** ***.**********  .

127. spacer 2.47|3245917|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215007 (Mycoplasma conjunctivae strain NCTC10147 plasmid 11) position: , mismatch: 11, identity: 0.656

taatgcaattatcatgaataatactatgcact	CRISPR spacer
agcaaaaaatatcaagaataatactatgcggg	Protospacer
 .  . ** ***** **************.

128. spacer 2.47|3245917|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to LR214964 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 10) position: , mismatch: 11, identity: 0.656

taatgcaattatcatgaataatactatgcact	CRISPR spacer
agcaaaaaatatcaagaataatactatgcggg	Protospacer
 .  . ** ***** **************.

129. spacer 2.47|3245917|32|NC_006369|PILER-CR,CRISPRCasFinder,CRT matches to LR214969 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 15) position: , mismatch: 11, identity: 0.656

taatgcaattatcatgaataatactatgcact	CRISPR spacer
agcaaaaaatatcaagaataatactatgcggg	Protospacer
 .  . ** ***** **************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

195736 : 227266

Wolbachia_phage(42.86%)

integrase,transposase

attL 191884:191900|attR 217984:218000

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
191884:191900	attL	NA	NA	NA	NA
WP_011214442.1\|195736_196612_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_011214444.1\|197055_197223_+	DUF3309 domain-containing protein	NA	NA	NA	NA
WP_011214445.1\|197354_198542_+	fatty acid desaturase	NA	NA	NA	NA
WP_011214446.1\|198867_201513_-	Ti-type conjugative transfer relaxase TraA	A0A288WIG1	Erinnyis_ello_granulovirus	4.6e-10	22.1
WP_011214447.1\|201760_201967_+	hypothetical protein	NA	NA	NA	NA
WP_011214448.1\|201953_202217_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_011214449.1\|202238_202805_+	hypothetical protein	NA	NA	NA	NA
WP_011214450.1\|202923_204147_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011214451.1\|204157_204652_+	hypothetical protein	NA	NA	NA	NA
WP_011214452.1\|204670_205426_+	queuosine precursor transporter	NA	NA	NA	NA
WP_025384766.1\|205400_206141_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_011214454.1\|206285_206567_+	hypothetical protein	NA	NA	NA	NA
WP_011214455.1\|206573_206780_+	hypothetical protein	NA	NA	NA	NA
WP_011214456.1\|206728_207934_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	4.4e-93	48.9
WP_011214457.1\|208123_209491_-	ATP-binding protein	NA	NA	NA	NA
WP_011214458.1\|210027_210912_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	5.6e-37	44.6
WP_011214459.1\|210913_211552_+	hypothetical protein	NA	NA	NA	NA
WP_011214461.1\|212153_213572_+\|transposase	IS4-like element ISLpn2 family transposase	Q9JMP3	Wolbachia_phage	5.6e-55	32.5
WP_129827406.1\|213722_214896_+\|transposase	IS3-like element ISLpn7 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.3e-61	43.3
WP_080020416.1\|217614_218595_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA
217984:218000	attR	NA	NA	NA	NA
WP_011214463.1\|218757_220989_+	hypothetical protein	NA	NA	NA	NA
WP_011214464.1\|221030_221240_-	hypothetical protein	NA	NA	NA	NA
WP_011214465.1\|221303_221948_-	hypothetical protein	NA	NA	NA	NA
WP_011214466.1\|222101_223523_+\|transposase	transposase	NA	NA	NA	NA
WP_041173706.1\|223609_224104_-	hypothetical protein	NA	NA	NA	NA
WP_105625135.1\|224524_225391_+	virulence protein RhuM/Fic/DOC family protein	Q9JMN3	Wolbachia_phage	2.0e-18	44.0
WP_011214461.1\|225847_227266_+\|transposase	IS4-like element ISLpn2 family transposase	Q9JMP3	Wolbachia_phage	5.6e-55	32.5

DBSCAN-SWA_2

567153 : 617570

Alteromonas_phage(10.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011214724.1\|567153_567831_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_011214725.1\|567842_568967_+	M42 family metallopeptidase	NA	NA	NA	NA
WP_011214726.1\|569044_570532_+	Dot/Icm T4SS effector AnkC/LegA12	NA	NA	NA	NA
WP_011214727.1\|570740_571883_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_011214728.1\|571885_572800_+\|protease	protease modulator HflC	R4VJU7	Alteromonas_phage	3.0e-09	29.6
WP_011214729.1\|572934_574230_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	4.2e-73	34.7
WP_011214730.1\|574449_575019_+	cupin	NA	NA	NA	NA
WP_011214731.1\|575218_575677_-	arginine repressor ArgR	NA	NA	NA	NA
WP_011214732.1\|575806_576541_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011214733.1\|576537_577185_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_011214734.1\|577168_577837_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-25	37.6
WP_011214735.1\|577833_579051_+	argininosuccinate synthase	NA	NA	NA	NA
WP_011214736.1\|579043_580279_+	argininosuccinate lyase	NA	NA	NA	NA
WP_011214737.1\|580281_581397_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_011214738.1\|581486_582962_-	adenosine deaminase	NA	NA	NA	NA
WP_011214739.1\|583135_584251_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010946247.1\|584323_585661_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	7.7e-22	27.4
WP_011214740.1\|585741_586884_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_011214741.1\|586870_588415_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_011214742.1\|588517_588814_-	hypothetical protein	NA	NA	NA	NA
WP_011214743.1\|588891_590163_-	hypothetical protein	NA	NA	NA	NA
WP_011214744.1\|590512_591229_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.7e-21	37.3
WP_011214745.1\|591239_592037_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_027229417.1\|592069_593422_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_011214747.1\|593592_595905_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_010946255.1\|596019_596520_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_011214748.1\|596533_597553_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_011214749.1\|597670_598123_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_011214750.1\|598119_598890_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_011214751.1\|598893_599298_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_011214752.1\|599319_600600_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.0e-95	46.2
WP_011214753.1\|600858_601902_+	GNAT family N-acetyltransferase	A0A2K5B2B6	Erysipelothrix_phage	1.6e-11	31.9
WP_011214754.1\|602071_602335_+	hypothetical protein	NA	NA	NA	NA
WP_011214755.1\|602672_603605_+	Dot/Icm T4SS effector LegD2	NA	NA	NA	NA
WP_011214757.1\|604442_605273_-	aldo/keto reductase	NA	NA	NA	NA
WP_011214758.1\|605581_606430_-	lpg0518 family Dot/Icm T4SS effector	NA	NA	NA	NA
WP_129904874.1\|606493_606718_-	hypothetical protein	NA	NA	NA	NA
WP_011214759.1\|606701_607460_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011214760.1\|607425_608034_-	AAA family ATPase	NA	NA	NA	NA
WP_011214761.1\|608030_608498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011214762.1\|608696_609032_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_011214763.1\|609023_609503_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041173862.1\|609530_609767_-\|transposase	IS5/IS1182 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.4e-11	40.0
WP_011214765.1\|609921_612612_-	cation-transporting P-type ATPase	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.1e-80	28.9
WP_011214766.1\|612654_613590_-	universal stress protein	NA	NA	NA	NA
WP_011214767.1\|613743_615438_+	cation:proton antiporter	NA	NA	NA	NA
WP_148264547.1\|616396_617570_+\|transposase	IS3-like element ISLpn7 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.3e-61	43.3

DBSCAN-SWA_3

982088 : 988927

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011215021.1\|982088_982865_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.9e-58	48.6
WP_011215022.1\|982857_983892_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.1e-75	47.6
WP_011215023.1\|983869_984448_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-55	53.2
WP_010946572.1\|984481_985207_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_011215024.1\|985203_985713_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_011215025.1\|985693_986263_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_011213328.1\|986259_986787_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946576.1\|986800_987763_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_011215026.1\|988129_988927_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-21	33.8

DBSCAN-SWA_4

1325099 : 1331036

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011215280.1\|1325099_1326173_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-29	27.5
WP_011215281.1\|1326157_1326772_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	6.0e-22	39.5
WP_011215282.1\|1326768_1327977_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.1e-99	48.7
WP_011215283.1\|1327984_1328452_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.0e-22	49.1
WP_011215284.1\|1328577_1330215_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.1e-154	52.3
WP_011215285.1\|1330211_1331036_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-53	43.9

DBSCAN-SWA_5

2235389 : 2245511

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011215979.1\|2235389_2237078_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	1.0e-15	30.4
WP_011215980.1\|2237209_2238217_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011215981.1\|2238340_2239666_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	4.7e-48	31.4
WP_011215982.1\|2239684_2240833_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-126	58.5
WP_011215983.1\|2241041_2242154_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.3e-51	35.4
WP_011215984.1\|2242248_2243388_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.0e-23	26.4
WP_011215985.1\|2243576_2245511_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_006366

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_006366_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006366_1

43276-46483

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR

53 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NC_006366_1

>merge|NC_006366|1|43276-46483|CRISPRCasFinder,CRT,PILER-CR
CTTCTAAGCTGCCTGTACGGCAGTGAACATATGTTTCGAATTCTTGATTAAAAATATCGCTTTCTAAGCTGCCTGTACGGCAGTGAACAGAAGACCTTTTAAGCGCCGTTGTCGGCATTTTTTCTAAGCTGCCTGTACGGCAGTGAACAGGTCTTTTTGCCCGTTTTTTTATCTTCATGTTTTCTAAGCTGCCTGTACGGCAGTGAACTACGTCTTTAGATGAGGTCATAACCACGTATTTTTCTAAGCTGCCTGTACGGCAGTGAACTGTCTCTGTTTGCTTTGGGGCACAATCCAGCATTTCTAAGCTGCCTGTACGGCAGTGAACAGAATCCTGAGGATTATGTTTTGTTCGAATTGTTTCTAAGCTGCCTGTACGGCAGTGAACGTTAGGTTCCGGAGGCGGTGACACGGCGGACATTTCTAAGCTGCCTGTACGGCAGTGAACGCGCAAAGGTTAGAAAGCAAGTCATGAGGTAATTTCTAAGCTGCCTGTACGGCAGTGAACAGTTTATCTGATGTTGAAAGATTAACTGTTAATTTCTAAGCTGCTTGTACGGCAGTGAACGATAAAAGCGGTCTATGCGGCCGACAAATTCCTTTCTAAGCTGCCTGTACGGCAGTGAACACATTTGTGTTAGGTTTAGTTGCGCCTCTTGTTTTCTAAGCTGCCTGTACGGCAGTGAACCTTATAAGCCATCAAATGCTGCTGGAACTGCTTTTCTAAGCTGCCTGTACGGCAGTGAACTCTACAGAAAGAAGGCTATATCTAAATAGATATTTCTAAGCTGCCTGTACGGCAGTGAACACACCAAGTTTAGGGCGTATGTCGGCGGCTTTTTTCTAAGCTGCCTGTACGGCAGTGAACCTTGAGTTGCAGACCCCGGGTCTTGCTGCTGATTTCTAAGCTGCCTGTACGGCAGTGAACCGCCGGTATATGACGCTGAATTAAATTTTATATTTCTAAGCTGCCTGTACGGCAGTGAACATTGACGATAGCGTTACCTACTAAGTGCAAGCTTTCTAAGCTGCCTGTACGGCAGTGAACCATGGAGTAATTATTAATCTAAGTTCAGGGCATTTCTAAGCTGCCTGTACGGCAGTGAACCAGGTAAAATATATTCGACTGAAATCTCAATCTTTCTAAGCTGCCTGTACGGCAGTGAACCTGGTCGAGCTCGTCATAGCTAAGGGCTAGTATTTCTAAGCTGCCTGTACGGCAGTGAACTAGCAATTACTTGCTTTGCTTCTTCACATATCTTTCTAAGCTGCCTGTACGGCAGTGAACGAAAGGGCAATAGTTAAGCGCATGGCACAAGCTTTCTAAGCTGCCTGTACGGCAGTGAACTGACCCGTCAACTAAATGGTGGAGCACGTTTTTTTCTAAGCTGCCTGTACGGCAGTGAACTGTATTTGTTTTTCAAGCTGCTCAAGCTCAGATTTCTAAGCTGCCTGTACGGCAGTGAACAATACCGGCACATTCACGGTGTAGGTGCACATTTTCTAAGCTGCCTGTACGGCAGTGAACTCTTCCGTACTTCTCACCATACTCACCACAGTTTTCTAAGCTGCCTGTACGGCAGTGAACTTAACGAAAGGTTTATTTACAGTTCAAAATGATTTCTAAGCTGCCTGTACGGCAGTGAACATGCTAGTACCTACCCTATCGTTCATGAATTATTTCTAAGCTGCCTGTACGGCAGTGAACTCTACAAAAGAGGCCATAAGAGCAACTCTCAATTTCTAAGCTGCCTGTACGGCAGTGAACATTAGATGCCCAGCGTGTAAAGGGACTAAGAATTTCTAAGCTGCCTGTACGGCAGTGAACCTTTTACTGATTCTTCAACTATCTGTTCAATTTTTCTAAGCTGCCTGTACGGCAGTGAACGTTAGGTTCTGGCGGCGGCGACACGGCAGACATTTCTAAGCTGCCTGTACGGCAGTGAACATTAACAGCCTTCATCATTTCCAAGCCCGCAGTTTCTAAGCTGCCTGTACGGCAGTGAACAATATGATGCGTGTAAAATATTAGAGCTGGAATTTCTAAGCTGCCTGTACGGCAGTGAACCCATTATCTGAGCAGATTAAAAAAATGGTAATTTTCTAAGCTGCCTGTACGGCAGTGAACGCTGAATGATTCTCCGAAAACCCCATCGAGTGTTTCTAAGCTGCCTGTACGGCAGTGAACGTTCCCCATCTCTTGAGCAGAAAAACAATTTTTTTCTAAGCTGCCTGTACGGCAGTGAACTTAGAGCAATACATACGAGATAATTATACGCCTTTCTAAGCTGCCTGTACGGCAGTGAACTGTTTTATAGTGAGATTCGTTTAAGTCTGATATTTCTAAGCTGCCTGTACGGCAGTGAACAGAGTATAGGAAATTAGAAGCTGGAACAAAAATTTCTAAGCTGCCTGTACGGCAGTGAACCACCATATAAGAACAATCGAAGTTCCGAATGTTTTCTAAGCTGCCTGTACGGCAGTGAACTTGTTTTAGGCAGTTTAAAAGGATTGTTTACATTTCTAAGCTGCCTGTACGGCAGTGAACCAACATCGGGGGGTTTAGCCTCAGCAACACCATTTCTAAGCTGCCTGTACGGCAGTGAACTGCTAGGAGAGTTATAAATGCTGATGTTGCTATTTCTAAGCTGCCTGTACGGCAGTGAACTTTACAATTCAGTTACAAATTAATTATTGCAATTTCTAAGCTGCCTGTACGGCAGTGAACTAAAGGCTGAATCACTTGCGGCCATGTACATATTTCTAAGCTGCCTGTACGGCAGTGAACTAGGCAAGTGGGATAAGCCTTACATGCAAAAATTTCTAAGCTGCCTGTACGGCAGTGAACGTAACTCAACAGCAGGGCCTTTCTGAGGCCAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTATGCGAATGGTAGTTTGTCGGATTATTTTTTTCTAAGCTGCCTGTACGGCAGTGAACTGTTAGATTTTTGTATGGGATCAGGTACTACATTTCTAAGCTGCCTGTACGGCAGTGAACGAAGGATCATTAGAAAATCTTTTACGCAAACTTTTCTAAGCTGCCTGTACGGCAGTGAACGTAAGATTGTTTTTTCTCCTAATTCTGCATTATTTCTAAGCTGCCTGTACGGCAGTGAACCATCGAGCCACGGCAAAAATTGGTTTTTAAAATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NC_006366|1|1|43276-46483|CRISPRCasFinder
CTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATGTTTCGAATTCTTGATTAAAAATATCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAAGACCTTTTAAGCGCCGTTGTCGGCATTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGGTCTTTTTGCCCGTTTTTTTATCTTCATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACGTCTTTAGATGAGGTCATAACCACGTATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTCTCTGTTTGCTTTGGGGCACAATCCAGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAATCCTGAGGATTATGTTTTGTTCGAATTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTAGGTTCCGGAGGCGGTGACACGGCGGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGCAAAGGTTAGAAAGCAAGTCATGAGGTAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTTTATCTGATGTTGAAAGATTAACTGTTAA
TTTCTAAGCTGCTTGTACGGCAGTGAAC	GATAAAAGCGGTCTATGCGGCCGACAAATTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACATTTGTGTTAGGTTTAGTTGCGCCTCTTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTATAAGCCATCAAATGCTGCTGGAACTGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTACAGAAAGAAGGCTATATCTAAATAGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACACCAAGTTTAGGGCGTATGTCGGCGGCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTGAGTTGCAGACCCCGGGTCTTGCTGCTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGCCGGTATATGACGCTGAATTAAATTTTATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTGACGATAGCGTTACCTACTAAGTGCAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATGGAGTAATTATTAATCTAAGTTCAGGGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAGGTAAAATATATTCGACTGAAATCTCAATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGGTCGAGCTCGTCATAGCTAAGGGCTAGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGCAATTACTTGCTTTGCTTCTTCACATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAAGGGCAATAGTTAAGCGCATGGCACAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGACCCGTCAACTAAATGGTGGAGCACGTTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTATTTGTTTTTCAAGCTGCTCAAGCTCAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATACCGGCACATTCACGGTGTAGGTGCACAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTTCCGTACTTCTCACCATACTCACCACAGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTAACGAAAGGTTTATTTACAGTTCAAAATGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATGCTAGTACCTACCCTATCGTTCATGAATTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTACAAAAGAGGCCATAAGAGCAACTCTCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTAGATGCCCAGCGTGTAAAGGGACTAAGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTTTACTGATTCTTCAACTATCTGTTCAATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTAGGTTCTGGCGGCGGCGACACGGCAGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTAACAGCCTTCATCATTTCCAAGCCCGCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATATGATGCGTGTAAAATATTAGAGCTGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATTATCTGAGCAGATTAAAAAAATGGTAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGAATGATTCTCCGAAAACCCCATCGAGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCCCCATCTCTTGAGCAGAAAAACAATTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTAGAGCAATACATACGAGATAATTATACGCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTTTTATAGTGAGATTCGTTTAAGTCTGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAGTATAGGAAATTAGAAGCTGGAACAAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CACCATATAAGAACAATCGAAGTTCCGAATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTGTTTTAGGCAGTTTAAAAGGATTGTTTACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAACATCGGGGGGTTTAGCCTCAGCAACACCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGCTAGGAGAGTTATAAATGCTGATGTTGCTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTACAATTCAGTTACAAATTAATTATTGCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAAGGCTGAATCACTTGCGGCCATGTACATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGGCAAGTGGGATAAGCCTTACATGCAAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAACTCAACAGCAGGGCCTTTCTGAGGCCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTATGCGAATGGTAGTTTGTCGGATTATTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTTAGATTTTTGTATGGGATCAGGTACTACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAGGATCATTAGAAAATCTTTTACGCAAACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGATTGTTTTTTCTCCTAATTCTGCATTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATCGAGCCACGGCAAAAATTGGTTTTTAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NC_006366|1|1|43276-46483|CRT
CTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATGTTTCGAATTCTTGATTAAAAATATCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAAGACCTTTTAAGCGCCGTTGTCGGCATTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGGTCTTTTTGCCCGTTTTTTTATCTTCATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACGTCTTTAGATGAGGTCATAACCACGTATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTCTCTGTTTGCTTTGGGGCACAATCCAGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAATCCTGAGGATTATGTTTTGTTCGAATTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTAGGTTCCGGAGGCGGTGACACGGCGGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGCAAAGGTTAGAAAGCAAGTCATGAGGTAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTTTATCTGATGTTGAAAGATTAACTGTTAA
TTTCTAAGCTGCTTGTACGGCAGTGAAC	GATAAAAGCGGTCTATGCGGCCGACAAATTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACATTTGTGTTAGGTTTAGTTGCGCCTCTTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTATAAGCCATCAAATGCTGCTGGAACTGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTACAGAAAGAAGGCTATATCTAAATAGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACACCAAGTTTAGGGCGTATGTCGGCGGCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTGAGTTGCAGACCCCGGGTCTTGCTGCTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGCCGGTATATGACGCTGAATTAAATTTTATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTGACGATAGCGTTACCTACTAAGTGCAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATGGAGTAATTATTAATCTAAGTTCAGGGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAGGTAAAATATATTCGACTGAAATCTCAATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGGTCGAGCTCGTCATAGCTAAGGGCTAGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGCAATTACTTGCTTTGCTTCTTCACATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAAGGGCAATAGTTAAGCGCATGGCACAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGACCCGTCAACTAAATGGTGGAGCACGTTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTATTTGTTTTTCAAGCTGCTCAAGCTCAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATACCGGCACATTCACGGTGTAGGTGCACAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTTCCGTACTTCTCACCATACTCACCACAGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTAACGAAAGGTTTATTTACAGTTCAAAATGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATGCTAGTACCTACCCTATCGTTCATGAATTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTACAAAAGAGGCCATAAGAGCAACTCTCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTAGATGCCCAGCGTGTAAAGGGACTAAGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTTTACTGATTCTTCAACTATCTGTTCAATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTAGGTTCTGGCGGCGGCGACACGGCAGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTAACAGCCTTCATCATTTCCAAGCCCGCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATATGATGCGTGTAAAATATTAGAGCTGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATTATCTGAGCAGATTAAAAAAATGGTAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGAATGATTCTCCGAAAACCCCATCGAGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCCCCATCTCTTGAGCAGAAAAACAATTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTAGAGCAATACATACGAGATAATTATACGCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTTTTATAGTGAGATTCGTTTAAGTCTGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAGTATAGGAAATTAGAAGCTGGAACAAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CACCATATAAGAACAATCGAAGTTCCGAATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTGTTTTAGGCAGTTTAAAAGGATTGTTTACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAACATCGGGGGGTTTAGCCTCAGCAACACCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGCTAGGAGAGTTATAAATGCTGATGTTGCTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTACAATTCAGTTACAAATTAATTATTGCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAAGGCTGAATCACTTGCGGCCATGTACATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGGCAAGTGGGATAAGCCTTACATGCAAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAACTCAACAGCAGGGCCTTTCTGAGGCCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTATGCGAATGGTAGTTTGTCGGATTATTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTTAGATTTTTGTATGGGATCAGGTACTACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAGGATCATTAGAAAATCTTTTACGCAAACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGATTGTTTTTTCTCCTAATTCTGCATTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATCGAGCCACGGCAAAAATTGGTTTTTAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NC_006366|1|1|45076-46483|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTTTACTGATTCTTCAACTATCTGTTCAATT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTAGGTTCTGGCGGCGGCGACACGGCAGACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTAACAGCCTTCATCATTTCCAAGCCCGCAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATATGATGCGTGTAAAATATTAGAGCTGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATTATCTGAGCAGATTAAAAAAATGGTAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGAATGATTCTCCGAAAACCCCATCGAGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCCCCATCTCTTGAGCAGAAAAACAATTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTAGAGCAATACATACGAGATAATTATACGCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTTTTATAGTGAGATTCGTTTAAGTCTGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGAGTATAGGAAATTAGAAGCTGGAACAAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CACCATATAAGAACAATCGAAGTTCCGAATGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTGTTTTAGGCAGTTTAAAAGGATTGTTTACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAACATCGGGGGGTTTAGCCTCAGCAACACCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGCTAGGAGAGTTATAAATGCTGATGTTGCTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTACAATTCAGTTACAAATTAATTATTGCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAAGGCTGAATCACTTGCGGCCATGTACATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGGCAAGTGGGATAAGCCTTACATGCAAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAACTCAACAGCAGGGCCTTTCTGAGGCCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTATGCGAATGGTAGTTTGTCGGATTATTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTTAGATTTTTGTATGGGATCAGGTACTACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAGGATCATTAGAAAATCTTTTACGCAAACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGATTGTTTTTTCTCCTAATTCTGCATTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATCGAGCCACGGCAAAAATTGGTTTTTAAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006366.1\|WP_011212632.1\|41533_41965_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225039
NC_006366.1\|WP_011212645.1\|56807_58085_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454
NC_006366.1\|WP_011212639.1\|48320_49262_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_006366.1\|WP_011212633.1\|42193_42760_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_006366.1\|WP_011212646.1\|58071_58578_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NC_006366.1\|WP_011212624.1\|35322_35727_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_006366.1\|WP_041173942.1\|40499_40790_+\|hypothetical-protein	unknown	unknown	unknown
NC_006366.1\|WP_011212623.1\|34427_34751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_006366.1\|WP_011212629.1\|38699_39233_-\|hypothetical-protein	unknown	unknown	unknown
NC_006366.1\|WP_011212631.1\|40780_41305_+\|hypothetical-protein	unknown	unknown	unknown
NC_006366.1\|WP_011212642.1\|53908_54877_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_006366.1\|WP_011212627.1\|36792_37656_-\|DUF1738-domain-containing-protein	unknown	unknown	gnl\|CDD\|226680
NC_006366.1\|WP_011212640.1\|49258_50524_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_006366.1\|WP_011212644.1\|55405_56383_-\|hypothetical-protein	unknown	unknown	unknown
NC_006366.1\|WP_011212641.1\|50516_53912_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NC_006366.1\|WP_011212643.1\|55063_55336_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|224872
NC_006366.1\|WP_011212625.1\|35723_35921_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NC_006366.1\|WP_011212637.1\|46714_47269_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NC_006366.1\|WP_011212628.1\|37965_38127_-\|hypothetical-protein	unknown	unknown	unknown
NC_006366.1\|WP_011212638.1\|47279_48305_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222

Protein	Function_ID	Function_description	E-value
NC_006366.1\|WP_011212632.1\|41533_41965_+\|hypothetical-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	0.00144483
NC_006366.1\|WP_011212645.1\|56807_58085_-\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	2.14814e-168
NC_006366.1\|WP_011212640.1\|49258_50524_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	3.35882e-166
NC_006366.1\|WP_011212633.1\|42193_42760_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.95732e-50
NC_006366.1\|WP_011212646.1\|58071_58578_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.20708e-44
NC_006366.1\|WP_011212623.1\|34427_34751_+\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	0.00850843
NC_006366.1\|WP_011212639.1\|48320_49262_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.88209e-142
NC_006366.1\|WP_011212624.1\|35322_35727_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.00127e-57
NC_006366.1\|WP_011212642.1\|53908_54877_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_006366.1\|WP_011212627.1\|36792_37656_-\|DUF1738-domain-containing-protein	gnl\|CDD\|226680	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair].	5.8094e-47
NC_006366.1\|WP_011212641.1\|50516_53912_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_006366.1\|WP_011212643.1\|55063_55336_-\|recombinase-family-protein	gnl\|CDD\|224872	COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair].	6.44312e-12
NC_006366.1\|WP_011212625.1\|35723_35921_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	1.11863e-19
NC_006366.1\|WP_011212637.1\|46714_47269_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.00387e-86
NC_006366.1\|WP_011212638.1\|47279_48305_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0

>NC_006366.1|WP_011212633.1|42193_42760_+|recombinase-family-protein
MSSSGKTIGYVRVSSFDQNPDRQLEGIILDKKFIDHISGKNIKRPQLEKLLDYVRDGDEVVVHSMDRLARNLDDLRQLVKSLTQRDVTLRFIKENLVFKGDDSPMSNLLLSIMGAFAEFERALIRERQLEGIAIAKQKGKYRGRKPSLNKDQAAILQERAKAGEQKTSLAKEFGISRETLYQYLKNNQ
>NC_006366.1|WP_011212632.1|41533_41965_+|hypothetical-protein
MSHIPLSNYGTSPFEKLLGYVPEILNNWSNLENAFLQSKTFEPNFLEQIRRALVFDNLCYYYIAKARPPDQRPEDILLTAALKFANKFAIDHKIINEQDIDELKQCFLTNEISELISYCSFITASQRFGSVLGLQPALKYDQK
>NC_006366.1|WP_011212631.1|40780_41305_+|hypothetical-protein
MSLNQLNIILFGMLISQFVLADVPVEVIGSCKNSRAVNASVTYTKIIPPAGVDDSPGCTNHIESTEGSFNYGAITCNHENYLILKSDRINLNTAQNHSVNPSITPGNRITQLSDWSKIVFDNNEYLCIDVELSQSGEGADVSQYYIVENAFNTSTPVLHFYFFNKDIMPMTDAN
>NC_006366.1|WP_041173942.1|40499_40790_+|hypothetical-protein
MNALDPEGVDYANGGCFWDGNDLVTKGAKHRHYRKGYKFTDPTHDVLSVGDSAPANLTGKFGTYNYTYESTAGYGQTVFWKLTQEFLTAQRGKQCH
>NC_006366.1|WP_011212629.1|38699_39233_-|hypothetical-protein
MTSLIEFKKQAKILRDFLGQKNHDITHSSCLEAIAIMNGFKNWNTMSGIFAKNGNALEKRSKTWICDTCGGLIQKPEEGWVEWIVSVPKNEAYGLRLAHRAGYGSNGSSCQYNEELVYKQYGGIINDGELSWYLGDGGLMLLLTLLEEQQIPQDQVLEMIKRLHIPEYEHARRHFNE
>NC_006366.1|WP_011212628.1|37965_38127_-|hypothetical-protein
MFVLHFNKEFASLIDLVLKAMGLGIRSINKIIENARNAKKKNEKKQRAKRKIY
>NC_006366.1|WP_011212627.1|36792_37656_-|DUF1738-domain-containing-protein
MKSYQEFCALNARRLFAIIEKHGGLLQWKKEWSGEGLNALPQGINGIYRGGNLFSLFFAQMENGFKSNQWLTFNQIKKGGGQVLNGSKAEEIYFWSLKDQIELNQKTNESEKKSSFIFKTYYVFNLEQTTLFKKEGGQNEQFQCNQLLNYIKPSISHFGNHAFYTPVNDTIVLPHREQFTDKAAYEATLLHELTHWTGVEYRLNRESLKAYGTEKGRAEEELVAEFGAFFLCAFFKIKSDIENHASYVNSWKTLLNEKEIMRATNMAAKAFHYLVEPLQKEQAQIAA
>NC_006366.1|WP_011212625.1|35723_35921_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MKSAEIIKIIERDGWVQCHQKGSHCQFKHPTKKGRVTVPHPKKDLPIKTVASIFKQAGINKEDIK
>NC_006366.1|WP_011212624.1|35322_35727_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MRYPVVIHKDEHSDFGVIVPDIPGCYSSGSTYDEALTNVIEAIECHLEGLLIDNEPLPVGTTIDRWINDEEFQGGVWAFVDIDLSQISGKAKRINITMPERILSLIDLYAKNHAIKNRSSFLADAALSYMESHK
>NC_006366.1|WP_011212623.1|34427_34751_+|hypothetical-protein
MSRLTISLPDNLHQHISALAIKNNDSMSNMINQLIQVGLHHWFKNDGNFKANPAVEKYCHQLIIQMNALIKNMSIELLKLDREDFEKLQQAAAIKYSELKNSAHENL
>NC_006366.1|WP_011212637.1|46714_47269_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDISILPDSEFTTPVLMNAIYTNLHKALHTLASTNIGVSFPKYSSTLGNLLRIHGKKEALQELQNLNWIGGMIGYCEASLIKTVPADTKFRTVSRKQPTMSQSKLRRLIKRNSLTEDEIRQYKAKMFSKGLDNPYIELVSVSNGQRHRRYIEFGELFNEPIPGLFDQFGLSNSATVPWFD
>NC_006366.1|WP_011212638.1|47279_48305_-|type-I-F-CRISPR-associated-protein-Csy3
MTKKEHIASVLAFEKKLVPSDGYMYGCKWEHKDKATPLRLNEKSVRGTISNRLKPALQKDPAALNNEVEKPNLQTVDTCSLGSEEDTLKLYFTLKVLGGLKHPSACNNAAFKQSYQQAVSNYLETKGMRELAKRYALNIANARFLWRNRFGAENIQVEVMALNEGAEKSWNFNALDFNPRDLETTTNEVDSLADRIADALASENDFLMLQITCYARIGKAQDVYPSEELVLDKGKGKKSKILYAVDGIAAMHSQKIGNALRTIDTWYPEFSDPVSSAGPIAIEPYGAVTNLGKAFRIPADKQDFYTFFDTWARGGELSRVEDEHYMMAVLVRGGVFGESDK
>NC_006366.1|WP_011212639.1|48320_49262_-|type-I-F-CRISPR-associated-protein-Csy2
MRSNLILLPSIRVQNANALSSPFTIGFPAMTGWLGGVHALQRKLNTNSIAVMFSAVGVVVHRFDLQTYKGPGDFVHSIIGTGNPLEPKSEKDKPKGNAVRPSFIEEARCHLEVSLLVEYSGIEAQDEQLMLERVYQLMLGNMKLAGGDVLNCKEPEILRDFQKAKRKLMPGYALIERRDLMQAAMEQGQDAMDAMLDYVAVHYSCTKEIVNGQERVIWQRKRKSTGPDGQTGWIVPIATGFHGISELGTAINQRDPDTPHRFAESLVTLGEFKMPYRLESLDDLLWRYHVESENNLYLCIQQKSISETSNDDY
>NC_006366.1|WP_011212640.1|49258_50524_-|type-I-F-CRISPR-associated-protein-Csy1
MFDPAITDFFAERKKSWLKKKLKSDMTELEKNNILQECEDIFALENWLPNAAKRAGWMSISTHPCTFSHPSSRKNKNGYVTSIIAKAPRKADGYLRSGNVHVALDALGNAAALDVYKFLSLVTEDGKTIIEHIQQNTEVAKSLLSIKTDSYENLRVGFLEMVSSNEASITSSKIKQVYFPMGNEYHQLSVLSNSGMIFELRERIDALRFSDTVQREREFRRDNIYSELGYKEIYDVTTIAYGGTKPQNVSVLNNQYGGKAYLLFSAPPMLEQREITFPTKDFFVQSIRYYDCKEILEQLDNIFKIERYGKISLDKIRKGRDRCLSDMLDMILQKMMVLREASKNQFRSQSSSLPAWQKIWLCEQYIEERGKRDDWLETLCKQIALWINSAYKNSIKHPTMLGEAERRYFKDFIDEHREVLR
>NC_006366.1|WP_011212641.1|50516_53912_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVIFVSQCEKKALARTRRVLDAFADRIGDNTWQTVITQEGLLAVKKLLRKTASKNTAVSCHWIRSRSRTELVWVVGNKSKFDREGRVAVNSTSKNQVYRDDLLDWKLLPVIQSLACLAALLHDWGKANARFQQKLAKNFKGIPADRLRHEWVSCLLLKALILNTDNPYSDSDWLGTLKDGIINEDAIKTALRMSCEKPLADLPNIAKLIAWLVVSHHKLPVNPDNLFNGSECFSLDGLLKLIDKSWGYENKTVDEISLCLEFPHGLLTRSSKWLSQIKRWSAKLLGIEELISQTINDGSYCVLLHHARLSLMLGDHYFSSLDVNQTSNWKCTTELIANTQKDKSPKQALDQHLVGVSESARDVVAKLPLIENGLEFSFNTAELKRKSPPAYTWQDTAAKKVRDWRLSCNDMRKGFFAVNIASTGCGKTFANAKVMMALSEDGDSLRYVLALGLRTLTLQTGDEYRERIFNKNDGTDLAVLIGSKAIADLHYQSRLDQTYEQEQQGSESIESLLADSDEIVYQGELPEEGLTTILKKHKDRQLLYAPVLVCTIDHMIAATETTRGGRYILPSLRLLSSDLVIDEVDDFTGSDLIAIGRLIHLAGMLGRKVMISSATIPPAMAEGYFNAYREGWSLYCKTRNANPMVGCAWIDEFSTQVEEIGMREHATQEFRKIHDKYIDRRVKHLNKQPAKRKAIVINCEEAMKRSDEPVVKNKKEAWFNRIAQTTLDMHKLNNTVDKKTGLKVSFGVVRIANIQPCVQLTRYLLTYDWPEHSEARIMAYHSRQVLLLRHEQEKHLDKVLKRKEKRGEKPQAFYDQTIRRHLDTIAANRPDVKNLLFILVATPVEEVGRDHDFDWAVIEPSSYRSIIQLAGRVMRHREDTIEYPNIAILQYNWRTIKYGDAERKPRFYFPGYEPDPRKRQTNKLSNGKNDCLNSHDIFKIVDINLIKDRLDSIPRIQERPENSKTPMALLEHSVIESLLTYYEGKGPETLQGYIQGYWRLTALPQYLNRFRQSTKTTQLYRVANETGEAWFTERDTRGYFSYVNTGEFARQDDAYQISTLPLTAEQSQRLWIQRDYLHLLREQMEISEMSIDKAAIHYGEISLDVYPDGINTEYEYNDQLGLYKKESNHV
>NC_006366.1|WP_011212642.1|53908_54877_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MEILTDLKAILHSKRANIYYLEKCRIMQKDGRVLYLTEAKNENQYWNIPIANTTCLLLGTGTSITQAAMRMLAQAGVLVGFCGGGGTPLLMANEVEWLTPQSEYRPTEYMQGWMKFWFDEQKRLYAAKQFQLSRIEYLRVHWKKSRDLAAEGFNSDDLQPELLSSELKIKKAKEVGKLMQNEAELTKQLYRYAANRTQYGKFIREREAIDKANIFLNHGNYLAYGLAATTLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDALILPWAFICAKENSSEQEFRQQCLQAFIDHKALDYMFEQVKAMALNTDWESENSEENLL
>NC_006366.1|WP_011212643.1|55063_55336_-|recombinase-family-protein
MRITLESISTCVQYPHVFGVLSEFERNLIKERTRAGLEAARGRQGGRPEKLSDEHKELVKTLYSNKKHSIQSTCKMVGVGKTTLYKYINQ
>NC_006366.1|WP_011212644.1|55405_56383_-|hypothetical-protein
MVTKQELIENPKDLKPHVVLLGAGASKAAFPNGDKSGNELPVMNDLAKILSLNNLLTKNNINPSENFETIYSQITDDGLKKEIESRIIDYFSKLSLPEHVTIYDQLLLSLREKDAIFTFNWDPFLFDAYKRNSDIVSLPQIFFLHGNVRIGACEACDKWGEKNTYCPECDIRFKDVPLLYPIKNKSYFQSSKYTALSWKKAESWFSEAFTITIFGYSAPTSDIEAVSLLNKAWLHISERQFEHVEVIDILSTNILSEKWKSFTPTHHLSSQNSFENSRLWRWPRRSCESLLYPMARGIPCEDFPLSKTKKLDQLHVEIQSISNYE
>NC_006366.1|WP_011212645.1|56807_58085_-|Y-family-DNA-polymerase
MSLPEMFALIDCNNFYASCERLFRPDLKDVPIVVLSNNDGCCIARSNEAKALGIAMGEPYFKIKHLCKQHGVKAFSSNYTLYGNMSHRVMCTIEEAWPHIEIYSIDEAFLDLRSLPVNSHNLFCEQLQKKILKYTGIPTSIGIGPTKTLAKAANHLCKKVYKIPVFNITSSRERLLQQISVGDIWGVGRQWANKLISRGIHTAYDLAMTNPHLLKKCFNVVLMRTAMELQGIACGGLEAIEPKQSIMSSKSFGQMQTQLASIEESISSHCARAVEKMRRQQLVAKRMVVFVNTNRFREDLAQHFQSIEFKLINPTDDLRLITKIAKRCLQRIFKPGYYYKKAGVWLEDLIPKSPRQLDMFHQPSDEHLKHTEQLMGVFDQINQKYGRSTIRLAAEGYSKPWAMRAELKSPAYTTRWSEVPQVRLF
>NC_006366.1|WP_011212646.1|58071_58578_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MSPRGGKREGAGRPRGEPTKAVRIPLSQLAKLERLKSHESYQLPVFASKIQAGFPSPADDYIEGYLDLNTKFIKHPSSTFVLQATGESMVDAGIFSGDWLLVDRSIEPSDGRIVIAAVNGELTVKRLSKKGGRVQLLPANPKFQPIDITEDSEMVIWGVVTLVLHELA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006366_1	1.1\|43304\|32\|NC_006366\|CRISPRCasFinder,CRT	43304-43335	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	25802-25833	0	1.0
NC_006366_1	1.1\|43304\|32\|NC_006366\|CRISPRCasFinder,CRT	43304-43335	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43304-43335	0	1.0
NC_006366_1	1.2\|43364\|32\|NC_006366\|CRISPRCasFinder,CRT	43364-43395	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	25982-26013	0	1.0
NC_006366_1	1.2\|43364\|32\|NC_006366\|CRISPRCasFinder,CRT	43364-43395	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43364-43395	0	1.0
NC_006366_1	1.3\|43424\|32\|NC_006366\|CRISPRCasFinder,CRT	43424-43455	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	26042-26073	0	1.0
NC_006366_1	1.3\|43424\|32\|NC_006366\|CRISPRCasFinder,CRT	43424-43455	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43424-43455	0	1.0
NC_006366_1	1.4\|43484\|32\|NC_006366\|CRISPRCasFinder,CRT	43484-43515	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	26102-26133	0	1.0
NC_006366_1	1.4\|43484\|32\|NC_006366\|CRISPRCasFinder,CRT	43484-43515	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43484-43515	0	1.0
NC_006366_1	1.5\|43544\|32\|NC_006366\|CRISPRCasFinder,CRT	43544-43575	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	26162-26193	0	1.0
NC_006366_1	1.5\|43544\|32\|NC_006366\|CRISPRCasFinder,CRT	43544-43575	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43544-43575	0	1.0
NC_006366_1	1.6\|43604\|32\|NC_006366\|CRISPRCasFinder,CRT	43604-43635	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33530-33561	0	1.0
NC_006366_1	1.6\|43604\|32\|NC_006366\|CRISPRCasFinder,CRT	43604-43635	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43604-43635	0	1.0
NC_006366_1	1.7\|43664\|32\|NC_006366\|CRISPRCasFinder,CRT	43664-43695	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33590-33621	0	1.0
NC_006366_1	1.7\|43664\|32\|NC_006366\|CRISPRCasFinder,CRT	43664-43695	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43664-43695	0	1.0
NC_006366_1	1.8\|43724\|32\|NC_006366\|CRISPRCasFinder,CRT	43724-43755	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33650-33681	0	1.0
NC_006366_1	1.8\|43724\|32\|NC_006366\|CRISPRCasFinder,CRT	43724-43755	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43724-43755	0	1.0
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33710-33741	0	1.0
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43784-43815	0	1.0
NC_006366_1	1.10\|43844\|32\|NC_006366\|CRISPRCasFinder,CRT	43844-43875	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33770-33801	0	1.0
NC_006366_1	1.10\|43844\|32\|NC_006366\|CRISPRCasFinder,CRT	43844-43875	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43844-43875	0	1.0
NC_006366_1	1.11\|43904\|32\|NC_006366\|CRISPRCasFinder,CRT	43904-43935	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33830-33861	0	1.0
NC_006366_1	1.11\|43904\|32\|NC_006366\|CRISPRCasFinder,CRT	43904-43935	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43904-43935	0	1.0
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33890-33921	0	1.0
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	43964-43995	0	1.0
NC_006366_1	1.13\|44024\|32\|NC_006366\|CRISPRCasFinder,CRT	44024-44055	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	33950-33981	0	1.0
NC_006366_1	1.13\|44024\|32\|NC_006366\|CRISPRCasFinder,CRT	44024-44055	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44024-44055	0	1.0
NC_006366_1	1.14\|44084\|32\|NC_006366\|CRISPRCasFinder,CRT	44084-44115	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34010-34041	0	1.0
NC_006366_1	1.14\|44084\|32\|NC_006366\|CRISPRCasFinder,CRT	44084-44115	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44084-44115	0	1.0
NC_006366_1	1.15\|44144\|32\|NC_006366\|CRISPRCasFinder,CRT	44144-44175	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34070-34101	0	1.0
NC_006366_1	1.15\|44144\|32\|NC_006366\|CRISPRCasFinder,CRT	44144-44175	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44144-44175	0	1.0
NC_006366_1	1.16\|44204\|32\|NC_006366\|CRISPRCasFinder,CRT	44204-44235	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34130-34161	0	1.0
NC_006366_1	1.16\|44204\|32\|NC_006366\|CRISPRCasFinder,CRT	44204-44235	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44204-44235	0	1.0
NC_006366_1	1.17\|44264\|32\|NC_006366\|CRISPRCasFinder,CRT	44264-44295	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34190-34221	0	1.0
NC_006366_1	1.17\|44264\|32\|NC_006366\|CRISPRCasFinder,CRT	44264-44295	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44264-44295	0	1.0
NC_006366_1	1.18\|44324\|32\|NC_006366\|CRISPRCasFinder,CRT	44324-44355	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34250-34281	0	1.0
NC_006366_1	1.18\|44324\|32\|NC_006366\|CRISPRCasFinder,CRT	44324-44355	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44324-44355	0	1.0
NC_006366_1	1.19\|44384\|32\|NC_006366\|CRISPRCasFinder,CRT	44384-44415	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34310-34341	0	1.0
NC_006366_1	1.19\|44384\|32\|NC_006366\|CRISPRCasFinder,CRT	44384-44415	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44384-44415	0	1.0
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34370-34401	0	1.0
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44444-44475	0	1.0
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34430-34461	0	1.0
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44504-44535	0	1.0
NC_006366_1	1.22\|44564\|32\|NC_006366\|CRISPRCasFinder,CRT	44564-44595	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34490-34521	0	1.0
NC_006366_1	1.22\|44564\|32\|NC_006366\|CRISPRCasFinder,CRT	44564-44595	32	NZ_CP015940	Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence	26653-26684	0	1.0
NC_006366_1	1.22\|44564\|32\|NC_006366\|CRISPRCasFinder,CRT	44564-44595	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44564-44595	0	1.0
NC_006366_1	1.23\|44624\|32\|NC_006366\|CRISPRCasFinder,CRT	44624-44655	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34550-34581	0	1.0
NC_006366_1	1.23\|44624\|32\|NC_006366\|CRISPRCasFinder,CRT	44624-44655	32	NZ_CP015940	Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence	26713-26744	0	1.0
NC_006366_1	1.23\|44624\|32\|NC_006366\|CRISPRCasFinder,CRT	44624-44655	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44624-44655	0	1.0
NC_006366_1	1.24\|44684\|32\|NC_006366\|CRISPRCasFinder,CRT	44684-44715	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34610-34641	0	1.0
NC_006366_1	1.24\|44684\|32\|NC_006366\|CRISPRCasFinder,CRT	44684-44715	32	NZ_CP015940	Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence	26773-26804	0	1.0
NC_006366_1	1.24\|44684\|32\|NC_006366\|CRISPRCasFinder,CRT	44684-44715	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44684-44715	0	1.0
NC_006366_1	1.25\|44744\|32\|NC_006366\|CRISPRCasFinder,CRT	44744-44775	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34670-34701	0	1.0
NC_006366_1	1.25\|44744\|32\|NC_006366\|CRISPRCasFinder,CRT	44744-44775	32	NZ_CP015940	Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence	26833-26864	0	1.0
NC_006366_1	1.25\|44744\|32\|NC_006366\|CRISPRCasFinder,CRT	44744-44775	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44744-44775	0	1.0
NC_006366_1	1.26\|44804\|32\|NC_006366\|CRISPRCasFinder,CRT	44804-44835	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34730-34761	0	1.0
NC_006366_1	1.26\|44804\|32\|NC_006366\|CRISPRCasFinder,CRT	44804-44835	32	NZ_CP015940	Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence	26893-26924	0	1.0
NC_006366_1	1.26\|44804\|32\|NC_006366\|CRISPRCasFinder,CRT	44804-44835	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44804-44835	0	1.0
NC_006366_1	1.27\|44864\|32\|NC_006366\|CRISPRCasFinder,CRT	44864-44895	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34790-34821	0	1.0
NC_006366_1	1.27\|44864\|32\|NC_006366\|CRISPRCasFinder,CRT	44864-44895	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44864-44895	0	1.0
NC_006366_1	1.28\|44924\|32\|NC_006366\|CRISPRCasFinder,CRT	44924-44955	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34850-34881	0	1.0
NC_006366_1	1.28\|44924\|32\|NC_006366\|CRISPRCasFinder,CRT	44924-44955	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44924-44955	0	1.0
NC_006366_1	1.29\|44984\|32\|NC_006366\|CRISPRCasFinder,CRT	44984-45015	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34910-34941	0	1.0
NC_006366_1	1.29\|44984\|32\|NC_006366\|CRISPRCasFinder,CRT	44984-45015	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	44984-45015	0	1.0
NC_006366_1	1.30\|45044\|32\|NC_006366\|CRISPRCasFinder,CRT	45044-45075	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	34970-35001	0	1.0
NC_006366_1	1.30\|45044\|32\|NC_006366\|CRISPRCasFinder,CRT	45044-45075	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45044-45075	0	1.0
NC_006366_1	1.31\|45104\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45104-45135	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	35030-35061	0	1.0
NC_006366_1	1.31\|45104\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45104-45135	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45104-45135	0	1.0
NC_006366_1	1.32\|45164\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45164-45195	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45164-45195	0	1.0
NC_006366_1	1.33\|45224\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45224-45255	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45224-45255	0	1.0
NC_006366_1	1.34\|45284\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45284-45315	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45284-45315	0	1.0
NC_006366_1	1.35\|45344\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45344-45375	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45344-45375	0	1.0
NC_006366_1	1.36\|45404\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45404-45435	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45404-45435	0	1.0
NC_006366_1	1.37\|45464\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45464-45495	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	35210-35241	0	1.0
NC_006366_1	1.37\|45464\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45464-45495	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45464-45495	0	1.0
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	35270-35301	0	1.0
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45524-45555	0	1.0
NC_006366_1	1.39\|45584\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45584-45615	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	35330-35361	0	1.0
NC_006366_1	1.39\|45584\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45584-45615	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45584-45615	0	1.0
NC_006366_1	1.40\|45644\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45644-45675	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45644-45675	0	1.0
NC_006366_1	1.41\|45704\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45704-45735	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45704-45735	0	1.0
NC_006366_1	1.42\|45764\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45764-45795	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45764-45795	0	1.0
NC_006366_1	1.43\|45824\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45824-45855	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45824-45855	0	1.0
NC_006366_1	1.44\|45884\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45884-45915	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45884-45915	0	1.0
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45944-45975	0	1.0
NC_006366_1	1.46\|46004\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46004-46035	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46004-46035	0	1.0
NC_006366_1	1.47\|46064\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46064-46095	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46064-46095	0	1.0
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46124-46155	0	1.0
NC_006366_1	1.49\|46184\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46184-46215	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46184-46215	0	1.0
NC_006366_1	1.50\|46244\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46244-46275	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46244-46275	0	1.0
NC_006366_1	1.51\|46304\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46304-46335	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46304-46335	0	1.0
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46364-46395	0	1.0
NC_006366_1	1.53\|46424\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46424-46455	32	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	46424-46455	0	1.0
NC_006366_1	1.46\|46004\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46004-46035	32	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	5129-5160	1	0.969
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH572494	Microviridae sp. isolate SD_HF_8, complete genome	591-622	2	0.938
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MN862345	Kummerowia striata gokushovirus strain pt119-gok-11, complete genome	1514-1545	3	0.906
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617089	Microviridae sp. isolate cthd782, complete genome	621-652	3	0.906
NC_006366_1	1.3\|43424\|32\|NC_006366\|CRISPRCasFinder,CRT	43424-43455	32	MN693810	Marine virus AFVG_250M1154, complete genome	32693-32724	4	0.875
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH616720	Microviridae sp. isolate ctcd922, complete genome	591-622	4	0.875
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	KT264822	Gokushovirus WZ-2015a isolate 74Chd23, complete genome	609-640	4	0.875
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP042824	Rhizobium sp. WL3 plasmid unnamed1, complete sequence	15372-15403	5	0.844
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_HG938357	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141b, complete sequence	9359-9390	5	0.844
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MW149085	Microvirus sp. isolate gila19, complete genome	609-640	5	0.844
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	KT264809	Gokushovirus WZ-2015a isolate 61Brd11, complete genome	594-625	5	0.844
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH029528	Gokushovirinae environmental samples clone NHS-Seq402, complete sequence	1758-1789	5	0.844
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH572469	Microviridae sp. isolate SD_MF_14, complete genome	573-604	5	0.844
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249146	Blackfly microvirus SF02 isolate 036, complete genome	642-673	5	0.844
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP039920	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626c, complete sequence	121298-121329	6	0.812
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	65085-65116	6	0.812
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP039912	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence	312159-312190	6	0.812
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP048640	Rhizobium oryzihabitans strain M15 plasmid p8, complete sequence	11167-11198	6	0.812
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	39392-39423	6	0.812
NC_006366_1	1.31\|45104\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45104-45135	32	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	14967-14998	6	0.812
NC_006366_1	1.31\|45104\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45104-45135	32	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	33681-33712	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617663	Microviridae sp. isolate ctcc12, complete genome	609-640	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249136	Blackfly microvirus SF02 isolate 021, complete genome	762-793	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH029529	Gokushovirinae environmental samples clone NHS-Seq407, complete sequence	643-674	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249149	Blackfly microvirus SF02 isolate 045, complete genome	729-760	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH992169	Apis mellifera associated microvirus 6 isolate BeeNHemo_SP_302, complete genome	2094-2125	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MN582079	Microviridae sp. ct0DW36, complete genome	1846-1877	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	KM589510	Microviridae Fen7786_21, complete genome	657-688	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249150	Blackfly microvirus SF02 isolate 046, complete genome	582-613	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249224	Blackfly microvirus SF02 isolate 184, complete genome	621-652	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK496752	Capybara microvirus Cap1_SP_228, complete genome	582-613	6	0.812
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH992181	Apis mellifera associated microvirus 8 isolate INH_SP_151, complete genome	1905-1936	6	0.812
NC_006366_1	1.1\|43304\|32\|NC_006366\|CRISPRCasFinder,CRT	43304-43335	32	NC_041878	Pectobacterium phage CBB, complete genome	173483-173514	7	0.781
NC_006366_1	1.6\|43604\|32\|NC_006366\|CRISPRCasFinder,CRT	43604-43635	32	MG945465	UNVERIFIED: Microviridae sp. isolate 233-1602, complete genome	1017-1048	7	0.781
NC_006366_1	1.6\|43604\|32\|NC_006366\|CRISPRCasFinder,CRT	43604-43635	32	MH572282	Microviridae sp. isolate SD_SC_81, complete genome	4002-4033	7	0.781
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	35381-35412	7	0.781
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	MT701588	Klebsiella phage Metamorpho, complete genome	1787-1818	7	0.781
NC_006366_1	1.19\|44384\|32\|NC_006366\|CRISPRCasFinder,CRT	44384-44415	32	NZ_CP013488	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence	73807-73838	7	0.781
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP006987	Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence	5166-5197	7	0.781
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	152678-152709	7	0.781
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	CP047390	Agrobacterium sp. CGMCC 11546 plasmid pB	31574-31605	7	0.781
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NC_012853	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence	56096-56127	7	0.781
NC_006366_1	1.20\|44444\|32\|NC_006366\|CRISPRCasFinder,CRT	44444-44475	32	NZ_CP021796	Sinorhizobium meliloti strain USDA1157 plasmid accessoryA, complete sequence	14475-14506	7	0.781
NC_006366_1	1.27\|44864\|32\|NC_006366\|CRISPRCasFinder,CRT	44864-44895	32	MN693103	Marine virus AFVG_25M539, complete genome	11163-11194	7	0.781
NC_006366_1	1.27\|44864\|32\|NC_006366\|CRISPRCasFinder,CRT	44864-44895	32	MT647605	Pelagibacter phage Lederberg EXVC029P, complete genome	9224-9255	7	0.781
NC_006366_1	1.32\|45164\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45164-45195	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1549041-1549072	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	KT264810	Gokushovirus WZ-2015a isolate 62Brd02, complete genome	582-613	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249223	Blackfly microvirus SF02 isolate 183, complete genome	585-616	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH616876	Microviridae sp. isolate ctdb54, complete genome	612-643	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	KT264808	Gokushovirus WZ-2015a isolate 60Brd01, complete genome	585-616	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249230	Blackfly microvirus SF02 isolate 195, complete genome	600-631	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH992193	Apis mellifera associated microvirus 32 isolate INH_SP_209, complete genome	2080-2111	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH029530	Gokushovirinae environmental samples clone NHS-Seq427, complete sequence	2786-2817	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH029520	Gokushovirinae environmental samples clone NHS-Seq287, complete sequence	694-725	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH992157	Apis mellifera associated microvirus 3 isolate BeeCNH_SP_2675, complete genome	1794-1825	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH992174	Apis mellifera associated microvirus 3 isolate IFH_SP_61, complete genome	1794-1825	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MN582080	Microviridae sp. ctjyu33, complete genome	3288-3319	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617760	Microviridae sp. isolate ctba734, complete genome	585-616	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH616722	Microviridae sp. isolate ctcb819, complete genome	471-502	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MG945608	UNVERIFIED: Microviridae sp. isolate 4485-1602, complete genome	2452-2483	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617312	Microviridae sp. isolate ctbe736, complete genome	612-643	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH572460	Microviridae sp. isolate SD_MC_24, complete genome	567-598	7	0.781
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249153	Blackfly microvirus SF02 isolate 051, complete genome	729-760	7	0.781
NC_006366_1	1.50\|46244\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46244-46275	32	MN694537	Marine virus AFVG_250M1002, complete genome	2995-3026	7	0.781
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	HG796260	Uncultured bacterium plasmid pRGI00100	6182-6213	7	0.781
NC_006366_1	1.3\|43424\|32\|NC_006366\|CRISPRCasFinder,CRT	43424-43455	32	NZ_CP045971	Listeria monocytogenes strain AUSMDU00000235 plasmid pAUSMDU00000235, complete sequence	1448-1479	8	0.75
NC_006366_1	1.7\|43664\|32\|NC_006366\|CRISPRCasFinder,CRT	43664-43695	32	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	340832-340863	8	0.75
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	AP013436	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C100-MedDCM-OCT-S26-C29	24360-24391	8	0.75
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	AP014254	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C71, * SEQUENCING IN PROGRESS *	16883-16914	8	0.75
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	LT615366	Enterococcus phage VPE25 genome assembly, chromosome: VPE25	80612-80643	8	0.75
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	79941-79972	8	0.75
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	LT546030	Enterococcus phage VPE25 genome assembly, chromosome: I	80612-80643	8	0.75
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	MH729874	Klebsiella phage KP179, complete genome	151076-151107	8	0.75
NC_006366_1	1.12\|43964\|32\|NC_006366\|CRISPRCasFinder,CRT	43964-43995	32	NZ_AP018829	Asticcacaulis excentricus strain M6 plasmid pASEM-1, complete sequence	271626-271657	8	0.75
NC_006366_1	1.16\|44204\|32\|NC_006366\|CRISPRCasFinder,CRT	44204-44235	32	NC_049494	Acinetobacter phage vB_AbaM_PhT2, complete genome	76463-76494	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	NZ_CP012102	Bacillus thuringiensis strain HS18-1 plasmid pHS18-3, complete sequence	24722-24753	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KX349297	Cyanophage S-RIM44 isolate W2_10_0709, complete genome	13819-13850	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KX349293	Cyanophage S-RIM44 isolate Np_20_0711, complete genome	13810-13841	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KX349296	Cyanophage S-RIM44 isolate Sn_13_0910, complete genome	13852-13883	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	NC_047734	Cyanophage S-RIM44 isolate Np_42_0711, complete genome	13807-13838	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KU594607	Cyanophage S-RIM44 isolate W2_07_0710, complete genome	13819-13850	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KX349291	Cyanophage S-RIM44 isolate ES_42_0910, complete genome	13852-13883	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	NC_015288	Prochlorococcus phage Syn1, complete genome	13849-13880	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KX349295	Cyanophage S-RIM44 isolate Sn_08_0709, complete genome	13819-13850	8	0.75
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	KX349292	Cyanophage S-RIM44 isolate Np_05_0604, complete genome	13819-13850	8	0.75
NC_006366_1	1.24\|44684\|32\|NC_006366\|CRISPRCasFinder,CRT	44684-44715	32	MF403008	Agrobacterium phage Atu_ph07, complete genome	344237-344268	8	0.75
NC_006366_1	1.24\|44684\|32\|NC_006366\|CRISPRCasFinder,CRT	44684-44715	32	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	138292-138323	8	0.75
NC_006366_1	1.26\|44804\|32\|NC_006366\|CRISPRCasFinder,CRT	44804-44835	32	MK249205	Blackfly microvirus SF02 isolate 148, complete genome	3481-3512	8	0.75
NC_006366_1	1.29\|44984\|32\|NC_006366\|CRISPRCasFinder,CRT	44984-45015	32	NZ_CP039845	Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence	23894-23925	8	0.75
NC_006366_1	1.32\|45164\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45164-45195	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	200436-200467	8	0.75
NC_006366_1	1.32\|45164\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45164-45195	32	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	574758-574789	8	0.75
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	AP013379	Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43	30949-30980	8	0.75
NC_006366_1	1.47\|46064\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46064-46095	32	AP013701	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C100-MedDCM-OCT-S37-C199, * SEQUENCING IN PROGRESS *	6502-6533	8	0.75
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617088	Microviridae sp. isolate ctca883, complete genome	606-637	8	0.75
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617316	Microviridae sp. isolate ctfh688, complete genome	606-637	8	0.75
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617723	Microviridae sp. isolate ctbe090, complete genome	606-637	8	0.75
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MK249212	Blackfly microvirus SF02 isolate 163, complete genome	675-706	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	339041-339072	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MN694146	Marine virus AFVG_250M723, complete genome	17661-17692	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MN183283	Arthrobacter phage BossLady, complete genome	7135-7166	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MF189176	Arthrobacter phage Jordan, complete genome	7144-7175	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MF189178	Arthrobacter phage Shade, complete genome	7123-7154	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	KU160668	Arthrobacter phage TaeYoung, complete genome	7144-7175	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MT889388	Arthrobacter phage Pippa, complete genome	7174-7205	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MT114161	Arthrobacter phage JKerns, complete genome	7174-7205	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NC_041933	Arthrobacter phage Sonny, complete genome	7144-7175	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	MK919479	Arthrobacter phage Grekaycon, complete genome	7144-7175	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NC_049468	Arthrobacter phage Zartrosa, complete genome	7144-7175	8	0.75
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	KU160656	Arthrobacter phage Martha, complete genome	7081-7112	8	0.75
NC_006366_1	1.3\|43424\|32\|NC_006366\|CRISPRCasFinder,CRT	43424-43455	32	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	8099-8130	9	0.719
NC_006366_1	1.3\|43424\|32\|NC_006366\|CRISPRCasFinder,CRT	43424-43455	32	MN657155	Sporosarcina sp. strain ANT_H38 plasmid pA38H3, complete sequence	3746-3777	9	0.719
NC_006366_1	1.4\|43484\|32\|NC_006366\|CRISPRCasFinder,CRT	43484-43515	32	NC_048849	Enterobacter phage vB_EclM_CIP9, complete genome	123194-123225	9	0.719
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	NC_013356	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence	6874-6905	9	0.719
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	NC_013785	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM402, complete sequence	13002-13033	9	0.719
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	NZ_CP003710	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252601, complete sequence	6113-6144	9	0.719
NC_006366_1	1.9\|43784\|32\|NC_006366\|CRISPRCasFinder,CRT	43784-43815	32	NZ_CP003716	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402301, complete sequence	18725-18756	9	0.719
NC_006366_1	1.21\|44504\|32\|NC_006366\|CRISPRCasFinder,CRT	44504-44535	32	NC_014757	Bacillus cereus VPC1401 plasmid pLVP1401 complete sequence	13819-13850	9	0.719
NC_006366_1	1.24\|44684\|32\|NC_006366\|CRISPRCasFinder,CRT	44684-44715	32	MH617316	Microviridae sp. isolate ctfh688, complete genome	1947-1978	9	0.719
NC_006366_1	1.26\|44804\|32\|NC_006366\|CRISPRCasFinder,CRT	44804-44835	32	MK249146	Blackfly microvirus SF02 isolate 036, complete genome	2737-2768	9	0.719
NC_006366_1	1.26\|44804\|32\|NC_006366\|CRISPRCasFinder,CRT	44804-44835	32	MH617089	Microviridae sp. isolate cthd782, complete genome	2713-2744	9	0.719
NC_006366_1	1.33\|45224\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45224-45255	32	MN693412	Marine virus AFVG_25M431, complete genome	36893-36924	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	366156-366187	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	112675-112706	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	177764-177795	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	325797-325828	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	45670-45701	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	26320-26351	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	464173-464204	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	465990-466021	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	14933-14964	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	676-707	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	377747-377778	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	153862-153893	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_AP014865	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence	425857-425888	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	271222-271253	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	491889-491920	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	2776-2807	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	224463-224494	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	352918-352949	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	193966-193997	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	495855-495886	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	415775-415806	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	267151-267182	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	379967-379998	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	46724-46755	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	94600-94631	9	0.719
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	401372-401403	9	0.719
NC_006366_1	1.44\|45884\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45884-45915	32	NZ_CP032413	Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence	77834-77865	9	0.719
NC_006366_1	1.44\|45884\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45884-45915	32	NZ_CP020864	Paenibacillus sp. Cedars plasmid unnamed1, complete sequence	127851-127882	9	0.719
NC_006366_1	1.44\|45884\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45884-45915	32	MN694547	Marine virus AFVG_250M388, complete genome	35058-35089	9	0.719
NC_006366_1	1.47\|46064\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46064-46095	32	NZ_KY503037	Pseudomonas fluorescens strain PC24 plasmid pPHE24, complete sequence	40098-40129	9	0.719
NC_006366_1	1.47\|46064\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46064-46095	32	NZ_CP029091	Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence	37309-37340	9	0.719
NC_006366_1	1.47\|46064\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46064-46095	32	NZ_CP027167	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence	77489-77520	9	0.719
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH572421	Microviridae sp. isolate SD_MC_21, complete genome	585-616	9	0.719
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MG945914	UNVERIFIED: Microviridae sp. isolate 8858-1602, partial genome	1741-1772	9	0.719
NC_006366_1	1.48\|46124\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46124-46155	32	MH617039	Microviridae sp. isolate ctda820, complete genome	594-625	9	0.719
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NZ_CP020032	Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence	26099-26130	9	0.719
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	962-993	9	0.719
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	962-993	9	0.719
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	AP014299	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C45, * SEQUENCING IN PROGRESS *	10234-10265	9	0.719
NC_006366_1	1.25\|44744\|32\|NC_006366\|CRISPRCasFinder,CRT	44744-44775	32	NZ_CP010419	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50d, complete sequence	41791-41822	10	0.688
NC_006366_1	1.32\|45164\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45164-45195	32	KX683428	Mycobacterium phage TBond007, complete genome	24679-24710	10	0.688
NC_006366_1	1.32\|45164\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45164-45195	32	NC_042325	Mycobacterium virus Pixie, complete genome	24680-24711	10	0.688
NC_006366_1	1.33\|45224\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45224-45255	32	NZ_CP050075	Enterobacter kobei strain 070 plasmid p070_A-KPC-2, complete sequence	29478-29509	10	0.688
NC_006366_1	1.33\|45224\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45224-45255	32	MN175386	Klebsiella pneumoniae strain KP-13-14 plasmid pKP-13-14-NDM-9, complete sequence	340223-340254	10	0.688
NC_006366_1	1.38\|45524\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45524-45555	32	NC_019773	Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence	41561-41592	10	0.688
NC_006366_1	1.39\|45584\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45584-45615	32	NZ_AP019369	Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence	7084-7115	10	0.688
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	KY554763	Lactococcus phage LW32, complete genome	16530-16561	10	0.688
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	NC_049806	Lactococcus phage LW31, complete genome	16530-16561	10	0.688
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	KY554765	Lactococcus phage LW4, complete genome	16589-16620	10	0.688
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	KY554764	Lactococcus phage LW33, complete genome	16828-16859	10	0.688
NC_006366_1	1.45\|45944\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	45944-45975	32	NC_049805	Lactococcus phage phiQ1 DNA, complete genome	46050-46081	10	0.688
NC_006366_1	1.52\|46364\|32\|NC_006366\|CRISPRCasFinder,CRT,PILER-CR	46364-46395	32	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	659907-659938	10	0.688

1. spacer 1.1|43304|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

atatgtttcgaattcttgattaaaaatatcgc	CRISPR spacer
atatgtttcgaattcttgattaaaaatatcgc	Protospacer
********************************

2. spacer 1.1|43304|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

atatgtttcgaattcttgattaaaaatatcgc	CRISPR spacer
atatgtttcgaattcttgattaaaaatatcgc	Protospacer
********************************

3. spacer 1.2|43364|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agaagaccttttaagcgccgttgtcggcattt	CRISPR spacer
agaagaccttttaagcgccgttgtcggcattt	Protospacer
********************************

4. spacer 1.2|43364|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

agaagaccttttaagcgccgttgtcggcattt	CRISPR spacer
agaagaccttttaagcgccgttgtcggcattt	Protospacer
********************************

5. spacer 1.3|43424|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aggtctttttgcccgtttttttatcttcatgt	CRISPR spacer
aggtctttttgcccgtttttttatcttcatgt	Protospacer
********************************

6. spacer 1.3|43424|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

aggtctttttgcccgtttttttatcttcatgt	CRISPR spacer
aggtctttttgcccgtttttttatcttcatgt	Protospacer
********************************

7. spacer 1.4|43484|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tacgtctttagatgaggtcataaccacgtatt	CRISPR spacer
tacgtctttagatgaggtcataaccacgtatt	Protospacer
********************************

8. spacer 1.4|43484|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tacgtctttagatgaggtcataaccacgtatt	CRISPR spacer
tacgtctttagatgaggtcataaccacgtatt	Protospacer
********************************

9. spacer 1.5|43544|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgtctctgtttgctttggggcacaatccagca	CRISPR spacer
tgtctctgtttgctttggggcacaatccagca	Protospacer
********************************

10. spacer 1.5|43544|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tgtctctgtttgctttggggcacaatccagca	CRISPR spacer
tgtctctgtttgctttggggcacaatccagca	Protospacer
********************************

11. spacer 1.6|43604|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agaatcctgaggattatgttttgttcgaattg	CRISPR spacer
agaatcctgaggattatgttttgttcgaattg	Protospacer
********************************

12. spacer 1.6|43604|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

agaatcctgaggattatgttttgttcgaattg	CRISPR spacer
agaatcctgaggattatgttttgttcgaattg	Protospacer
********************************

13. spacer 1.7|43664|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gttaggttccggaggcggtgacacggcggaca	CRISPR spacer
gttaggttccggaggcggtgacacggcggaca	Protospacer
********************************

14. spacer 1.7|43664|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gttaggttccggaggcggtgacacggcggaca	CRISPR spacer
gttaggttccggaggcggtgacacggcggaca	Protospacer
********************************

15. spacer 1.8|43724|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gcgcaaaggttagaaagcaagtcatgaggtaa	CRISPR spacer
gcgcaaaggttagaaagcaagtcatgaggtaa	Protospacer
********************************

16. spacer 1.8|43724|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gcgcaaaggttagaaagcaagtcatgaggtaa	CRISPR spacer
gcgcaaaggttagaaagcaagtcatgaggtaa	Protospacer
********************************

17. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
agtttatctgatgttgaaagattaactgttaa	Protospacer
********************************

18. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
agtttatctgatgttgaaagattaactgttaa	Protospacer
********************************

19. spacer 1.10|43844|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gataaaagcggtctatgcggccgacaaattcc	CRISPR spacer
gataaaagcggtctatgcggccgacaaattcc	Protospacer
********************************

20. spacer 1.10|43844|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gataaaagcggtctatgcggccgacaaattcc	CRISPR spacer
gataaaagcggtctatgcggccgacaaattcc	Protospacer
********************************

21. spacer 1.11|43904|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

acatttgtgttaggtttagttgcgcctcttgt	CRISPR spacer
acatttgtgttaggtttagttgcgcctcttgt	Protospacer
********************************

22. spacer 1.11|43904|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

acatttgtgttaggtttagttgcgcctcttgt	CRISPR spacer
acatttgtgttaggtttagttgcgcctcttgt	Protospacer
********************************

23. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
cttataagccatcaaatgctgctggaactgct	Protospacer
********************************

24. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
cttataagccatcaaatgctgctggaactgct	Protospacer
********************************

25. spacer 1.13|44024|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tctacagaaagaaggctatatctaaatagata	CRISPR spacer
tctacagaaagaaggctatatctaaatagata	Protospacer
********************************

26. spacer 1.13|44024|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tctacagaaagaaggctatatctaaatagata	CRISPR spacer
tctacagaaagaaggctatatctaaatagata	Protospacer
********************************

27. spacer 1.14|44084|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

acaccaagtttagggcgtatgtcggcggcttt	CRISPR spacer
acaccaagtttagggcgtatgtcggcggcttt	Protospacer
********************************

28. spacer 1.14|44084|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

acaccaagtttagggcgtatgtcggcggcttt	CRISPR spacer
acaccaagtttagggcgtatgtcggcggcttt	Protospacer
********************************

29. spacer 1.15|44144|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cttgagttgcagaccccgggtcttgctgctga	CRISPR spacer
cttgagttgcagaccccgggtcttgctgctga	Protospacer
********************************

30. spacer 1.15|44144|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

cttgagttgcagaccccgggtcttgctgctga	CRISPR spacer
cttgagttgcagaccccgggtcttgctgctga	Protospacer
********************************

31. spacer 1.16|44204|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgccggtatatgacgctgaattaaattttata	CRISPR spacer
cgccggtatatgacgctgaattaaattttata	Protospacer
********************************

32. spacer 1.16|44204|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

cgccggtatatgacgctgaattaaattttata	CRISPR spacer
cgccggtatatgacgctgaattaaattttata	Protospacer
********************************

33. spacer 1.17|44264|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

attgacgatagcgttacctactaagtgcaagc	CRISPR spacer
attgacgatagcgttacctactaagtgcaagc	Protospacer
********************************

34. spacer 1.17|44264|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

attgacgatagcgttacctactaagtgcaagc	CRISPR spacer
attgacgatagcgttacctactaagtgcaagc	Protospacer
********************************

35. spacer 1.18|44324|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

catggagtaattattaatctaagttcagggca	CRISPR spacer
catggagtaattattaatctaagttcagggca	Protospacer
********************************

36. spacer 1.18|44324|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

catggagtaattattaatctaagttcagggca	CRISPR spacer
catggagtaattattaatctaagttcagggca	Protospacer
********************************

37. spacer 1.19|44384|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

caggtaaaatatattcgactgaaatctcaatc	CRISPR spacer
caggtaaaatatattcgactgaaatctcaatc	Protospacer
********************************

38. spacer 1.19|44384|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

caggtaaaatatattcgactgaaatctcaatc	CRISPR spacer
caggtaaaatatattcgactgaaatctcaatc	Protospacer
********************************

39. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctggtcgagctcgtcatagctaagggctagta	CRISPR spacer
ctggtcgagctcgtcatagctaagggctagta	Protospacer
********************************

40. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

ctggtcgagctcgtcatagctaagggctagta	CRISPR spacer
ctggtcgagctcgtcatagctaagggctagta	Protospacer
********************************

41. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tagcaattacttgctttgcttcttcacatatc	Protospacer
********************************

42. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tagcaattacttgctttgcttcttcacatatc	Protospacer
********************************

43. spacer 1.22|44564|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagggcaatagttaagcgcatggcacaagc	CRISPR spacer
gaaagggcaatagttaagcgcatggcacaagc	Protospacer
********************************

44. spacer 1.22|44564|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagggcaatagttaagcgcatggcacaagc	CRISPR spacer
gaaagggcaatagttaagcgcatggcacaagc	Protospacer
********************************

45. spacer 1.22|44564|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagggcaatagttaagcgcatggcacaagc	CRISPR spacer
gaaagggcaatagttaagcgcatggcacaagc	Protospacer
********************************

46. spacer 1.23|44624|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgacccgtcaactaaatggtggagcacgtttt	CRISPR spacer
tgacccgtcaactaaatggtggagcacgtttt	Protospacer
********************************

47. spacer 1.23|44624|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgacccgtcaactaaatggtggagcacgtttt	CRISPR spacer
tgacccgtcaactaaatggtggagcacgtttt	Protospacer
********************************

48. spacer 1.23|44624|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tgacccgtcaactaaatggtggagcacgtttt	CRISPR spacer
tgacccgtcaactaaatggtggagcacgtttt	Protospacer
********************************

49. spacer 1.24|44684|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgtatttgtttttcaagctgctcaagctcaga	CRISPR spacer
tgtatttgtttttcaagctgctcaagctcaga	Protospacer
********************************

50. spacer 1.24|44684|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgtatttgtttttcaagctgctcaagctcaga	CRISPR spacer
tgtatttgtttttcaagctgctcaagctcaga	Protospacer
********************************

51. spacer 1.24|44684|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tgtatttgtttttcaagctgctcaagctcaga	CRISPR spacer
tgtatttgtttttcaagctgctcaagctcaga	Protospacer
********************************

52. spacer 1.25|44744|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aataccggcacattcacggtgtaggtgcacat	CRISPR spacer
aataccggcacattcacggtgtaggtgcacat	Protospacer
********************************

53. spacer 1.25|44744|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aataccggcacattcacggtgtaggtgcacat	CRISPR spacer
aataccggcacattcacggtgtaggtgcacat	Protospacer
********************************

54. spacer 1.25|44744|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

aataccggcacattcacggtgtaggtgcacat	CRISPR spacer
aataccggcacattcacggtgtaggtgcacat	Protospacer
********************************

55. spacer 1.26|44804|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tcttccgtacttctcaccatactcaccacagt	CRISPR spacer
tcttccgtacttctcaccatactcaccacagt	Protospacer
********************************

56. spacer 1.26|44804|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttccgtacttctcaccatactcaccacagt	CRISPR spacer
tcttccgtacttctcaccatactcaccacagt	Protospacer
********************************

57. spacer 1.26|44804|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tcttccgtacttctcaccatactcaccacagt	CRISPR spacer
tcttccgtacttctcaccatactcaccacagt	Protospacer
********************************

58. spacer 1.27|44864|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttaacgaaaggtttatttacagttcaaaatga	CRISPR spacer
ttaacgaaaggtttatttacagttcaaaatga	Protospacer
********************************

59. spacer 1.27|44864|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

ttaacgaaaggtttatttacagttcaaaatga	CRISPR spacer
ttaacgaaaggtttatttacagttcaaaatga	Protospacer
********************************

60. spacer 1.28|44924|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

atgctagtacctaccctatcgttcatgaatta	CRISPR spacer
atgctagtacctaccctatcgttcatgaatta	Protospacer
********************************

61. spacer 1.28|44924|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

atgctagtacctaccctatcgttcatgaatta	CRISPR spacer
atgctagtacctaccctatcgttcatgaatta	Protospacer
********************************

62. spacer 1.29|44984|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tctacaaaagaggccataagagcaactctcaa	CRISPR spacer
tctacaaaagaggccataagagcaactctcaa	Protospacer
********************************

63. spacer 1.29|44984|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tctacaaaagaggccataagagcaactctcaa	CRISPR spacer
tctacaaaagaggccataagagcaactctcaa	Protospacer
********************************

64. spacer 1.30|45044|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

attagatgcccagcgtgtaaagggactaagaa	CRISPR spacer
attagatgcccagcgtgtaaagggactaagaa	Protospacer
********************************

65. spacer 1.30|45044|32|NC_006366|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

attagatgcccagcgtgtaaagggactaagaa	CRISPR spacer
attagatgcccagcgtgtaaagggactaagaa	Protospacer
********************************

66. spacer 1.31|45104|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cttttactgattcttcaactatctgttcaatt	CRISPR spacer
cttttactgattcttcaactatctgttcaatt	Protospacer
********************************

67. spacer 1.31|45104|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

cttttactgattcttcaactatctgttcaatt	CRISPR spacer
cttttactgattcttcaactatctgttcaatt	Protospacer
********************************

68. spacer 1.32|45164|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gttaggttctggcggcggcgacacggcagaca	CRISPR spacer
gttaggttctggcggcggcgacacggcagaca	Protospacer
********************************

69. spacer 1.33|45224|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

attaacagccttcatcatttccaagcccgcag	CRISPR spacer
attaacagccttcatcatttccaagcccgcag	Protospacer
********************************

70. spacer 1.34|45284|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

aatatgatgcgtgtaaaatattagagctggaa	CRISPR spacer
aatatgatgcgtgtaaaatattagagctggaa	Protospacer
********************************

71. spacer 1.35|45344|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

ccattatctgagcagattaaaaaaatggtaat	CRISPR spacer
ccattatctgagcagattaaaaaaatggtaat	Protospacer
********************************

72. spacer 1.36|45404|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gctgaatgattctccgaaaaccccatcgagtg	CRISPR spacer
gctgaatgattctccgaaaaccccatcgagtg	Protospacer
********************************

73. spacer 1.37|45464|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gttccccatctcttgagcagaaaaacaatttt	CRISPR spacer
gttccccatctcttgagcagaaaaacaatttt	Protospacer
********************************

74. spacer 1.37|45464|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gttccccatctcttgagcagaaaaacaatttt	CRISPR spacer
gttccccatctcttgagcagaaaaacaatttt	Protospacer
********************************

75. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
ttagagcaatacatacgagataattatacgcc	Protospacer
********************************

76. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
ttagagcaatacatacgagataattatacgcc	Protospacer
********************************

77. spacer 1.39|45584|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgttttatagtgagattcgtttaagtctgata	CRISPR spacer
tgttttatagtgagattcgtttaagtctgata	Protospacer
********************************

78. spacer 1.39|45584|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tgttttatagtgagattcgtttaagtctgata	CRISPR spacer
tgttttatagtgagattcgtttaagtctgata	Protospacer
********************************

79. spacer 1.40|45644|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

agagtataggaaattagaagctggaacaaaaa	CRISPR spacer
agagtataggaaattagaagctggaacaaaaa	Protospacer
********************************

80. spacer 1.41|45704|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

caccatataagaacaatcgaagttccgaatgt	CRISPR spacer
caccatataagaacaatcgaagttccgaatgt	Protospacer
********************************

81. spacer 1.42|45764|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttttaggcagtttaaaaggattgtttaca	CRISPR spacer
ttgttttaggcagtttaaaaggattgtttaca	Protospacer
********************************

82. spacer 1.43|45824|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

caacatcggggggtttagcctcagcaacacca	CRISPR spacer
caacatcggggggtttagcctcagcaacacca	Protospacer
********************************

83. spacer 1.44|45884|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tgctaggagagttataaatgctgatgttgcta	CRISPR spacer
tgctaggagagttataaatgctgatgttgcta	Protospacer
********************************

84. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
tttacaattcagttacaaattaattattgcaa	Protospacer
********************************

85. spacer 1.46|46004|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

taaaggctgaatcacttgcggccatgtacata	CRISPR spacer
taaaggctgaatcacttgcggccatgtacata	Protospacer
********************************

86. spacer 1.47|46064|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

taggcaagtgggataagccttacatgcaaaaa	CRISPR spacer
taggcaagtgggataagccttacatgcaaaaa	Protospacer
********************************

87. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gtaactcaacagcagggcctttctgaggccaa	Protospacer
********************************

88. spacer 1.49|46184|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gttatgcgaatggtagtttgtcggattatttt	CRISPR spacer
gttatgcgaatggtagtttgtcggattatttt	Protospacer
********************************

89. spacer 1.50|46244|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

tgttagatttttgtatgggatcaggtactaca	CRISPR spacer
tgttagatttttgtatgggatcaggtactaca	Protospacer
********************************

90. spacer 1.51|46304|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gaaggatcattagaaaatcttttacgcaaact	CRISPR spacer
gaaggatcattagaaaatcttttacgcaaact	Protospacer
********************************

91. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
gtaagattgttttttctcctaattctgcatta	Protospacer
********************************

92. spacer 1.53|46424|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 0, identity: 1.0

catcgagccacggcaaaaattggtttttaaaa	CRISPR spacer
catcgagccacggcaaaaattggtttttaaaa	Protospacer
********************************

93. spacer 1.46|46004|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 1, identity: 0.969

taaaggctgaatcacttgcggccatgtacata	CRISPR spacer
taaaggctgaatcacttgcggccatgtacatg	Protospacer
*******************************.

94. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH572494 (Microviridae sp. isolate SD_HF_8, complete genome) position: , mismatch: 2, identity: 0.938

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaactcaacagcaggacctttctgaggccaa	Protospacer
*.**************.***************

95. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN862345 (Kummerowia striata gokushovirus strain pt119-gok-11, complete genome) position: , mismatch: 3, identity: 0.906

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gtaactcgacagaagggcctttctgaggccag	Protospacer
*******.**** ******************.

96. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617089 (Microviridae sp. isolate cthd782, complete genome) position: , mismatch: 3, identity: 0.906

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaaatcaacagcagggcccttctgaggccaa	Protospacer
*.** **************.************

97. spacer 1.3|43424|32|NC_006366|CRISPRCasFinder,CRT matches to MN693810 (Marine virus AFVG_250M1154, complete genome) position: , mismatch: 4, identity: 0.875

aggtctttttgcccgtttttttatcttcatgt	CRISPR spacer
ggttctttttgcacgtttttttctcttcatgt	Protospacer
.* ********* ********* *********

98. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH616720 (Microviridae sp. isolate ctcd922, complete genome) position: , mismatch: 4, identity: 0.875

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaagctcaacagcaggacctttttgaggccaa	Protospacer
* *.************.*****.*********

99. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KT264822 (Gokushovirus WZ-2015a isolate 74Chd23, complete genome) position: , mismatch: 4, identity: 0.875

gtaac-tcaacagcagggcctttctgaggccaa	CRISPR spacer
-caacatcaacagacgggcctttctgaggccaa	Protospacer
 .*** *******  ******************

100. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP042824 (Rhizobium sp. WL3 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaagccgctggt-	Protospacer
*****************.** ***  ***.**

101. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_HG938357 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141b, complete sequence) position: , mismatch: 5, identity: 0.844

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggccaagccgctggt-	Protospacer
*****************.**.***  ***.**

102. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MW149085 (Microvirus sp. isolate gila19, complete genome) position: , mismatch: 5, identity: 0.844

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
cgacctcaaccgcagggcctttctgaggccag	Protospacer
  * ****** ********************.

103. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KT264809 (Gokushovirus WZ-2015a isolate 61Brd11, complete genome) position: , mismatch: 5, identity: 0.844

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagcgtaacagcagggcctttctggggccaa	Protospacer
*.*.* .******************.******

104. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH029528 (Gokushovirinae environmental samples clone NHS-Seq402, complete sequence) position: , mismatch: 5, identity: 0.844

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
ggatattaaccgcagggcctttctgaggccaa	Protospacer
* *  *.*** *********************

105. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH572469 (Microviridae sp. isolate SD_MF_14, complete genome) position: , mismatch: 5, identity: 0.844

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatatcaacagaagggcctttctgtggccaa	Protospacer
* *  ******* ************ ******

106. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249146 (Blackfly microvirus SF02 isolate 036, complete genome) position: , mismatch: 5, identity: 0.844

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatatcaacagcaggacccttctgaggccaa	Protospacer
* *  ***********.**.************

107. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP039920 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626c, complete sequence) position: , mismatch: 6, identity: 0.812

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgctcgt-	Protospacer
*****************.** **.  *** **

108. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 6, identity: 0.812

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcgaaaccgctggt-	Protospacer
*****************.** **.  ***.**

109. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 6, identity: 0.812

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgctcgt-	Protospacer
*****************.** **.  *** **

110. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP048640 (Rhizobium oryzihabitans strain M15 plasmid p8, complete sequence) position: , mismatch: 6, identity: 0.812

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgctcgt-	Protospacer
*****************.** **.  *** **

111. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.812

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgctcgt-	Protospacer
*****************.** **.  *** **

112. spacer 1.31|45104|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 6, identity: 0.812

cttttactgattcttcaactatctgttcaatt	CRISPR spacer
attcgactgattcttcaattatctgttcaggt	Protospacer
 **. *************.**********. *

113. spacer 1.31|45104|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 6, identity: 0.812

cttttactgattcttcaactatctgttcaatt	CRISPR spacer
attcgactgattcttcaattatctgttcaggt	Protospacer
 **. *************.**********. *

114. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617663 (Microviridae sp. isolate ctcc12, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
caacttcaacggcaggacctttctgaggccaa	Protospacer
  * .*****.*****.***************

115. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249136 (Blackfly microvirus SF02 isolate 021, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaaagtaacagccgggcctttctgaggccac	Protospacer
*.**  .****** *****************

116. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH029529 (Gokushovirinae environmental samples clone NHS-Seq407, complete sequence) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
ggatattaacagcaggccctttctgaggccac	Protospacer
* *  *.********* **************

117. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249149 (Blackfly microvirus SF02 isolate 045, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagttggacagcagggcctttttgaggccaa	Protospacer
*.*..* .**************.*********

118. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH992169 (Apis mellifera associated microvirus 6 isolate BeeNHemo_SP_302, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaactcaacatcaggccctttctgaggaaat	Protospacer
*.********* **** ***********  *

119. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN582079 (Microviridae sp. ct0DW36, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaagatcaacggcagggcctttttgaggccat	Protospacer
* *. *****.***********.********

120. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KM589510 (Microviridae Fen7786_21, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
ggataacaacagcagggcctttttgagtccaa	Protospacer
* *   ****************.**** ****

121. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249150 (Blackfly microvirus SF02 isolate 046, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaagctggacagcaggacctttctgaggccat	Protospacer
* *.** .********.**************

122. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249224 (Blackfly microvirus SF02 isolate 184, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaaagccacagcagggcctttttgaggccat	Protospacer
*.**  * **************.********

123. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK496752 (Capybara microvirus Cap1_SP_228, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaacgtcacagcggggcctttctggggccaa	Protospacer
*.*** . *****.***********.******

124. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH992181 (Apis mellifera associated microvirus 8 isolate INH_SP_151, complete genome) position: , mismatch: 6, identity: 0.812

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaattgcacagcaggacctttttgaggccaa	Protospacer
*.**.*  ********.*****.*********

125. spacer 1.1|43304|32|NC_006366|CRISPRCasFinder,CRT matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 7, identity: 0.781

atatgtttcgaattcttgattaaaaatatcgc	CRISPR spacer
acgtgtggagaattcttgattagaaatattgc	Protospacer
*..***   *************.******.**

126. spacer 1.6|43604|32|NC_006366|CRISPRCasFinder,CRT matches to MG945465 (UNVERIFIED: Microviridae sp. isolate 233-1602, complete genome) position: , mismatch: 7, identity: 0.781

agaatcctgaggattatgttttgttcgaattg	CRISPR spacer
agcatcctgaggattatgatttgtatgagatt	Protospacer
** *************** ***** .**. *

127. spacer 1.6|43604|32|NC_006366|CRISPRCasFinder,CRT matches to MH572282 (Microviridae sp. isolate SD_SC_81, complete genome) position: , mismatch: 7, identity: 0.781

agaatcctgaggattatgttttgttcgaattg	CRISPR spacer
agcatcctgaggattttgttttgtataaagtt	Protospacer
** ************ ******** ..** *

128. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
gcagtgaaccatcaaatgctgctggtactgct	Protospacer
 . .*.*.***************** ******

129. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to MT701588 (Klebsiella phage Metamorpho, complete genome) position: , mismatch: 7, identity: 0.781

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
agtatatgccatcaaatgctactggaaatcgt	Protospacer
  **** *************.****** *  *

130. spacer 1.19|44384|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP013488 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence) position: , mismatch: 7, identity: 0.781

caggtaaaatatattcgactgaaatctcaatc	CRISPR spacer
aagcgaaaatctatgcgactgaaatctcatta	Protospacer
 **  ***** *** ************** *

131. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP006987 (Rhizobium sp. IE4771 plasmid pRetIE4771a, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaagccattggt-	Protospacer
*****************.** ***  ..*.**

132. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ttggtcgagctcgtcatggcgaagccactggt-	Protospacer
.****************.** ***  .**.**

133. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to CP047390 (Agrobacterium sp. CGMCC 11546 plasmid pB) position: , mismatch: 7, identity: 0.781

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgttggt-	Protospacer
*****************.** **.  *.*.**

134. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NC_012853 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgttggt-	Protospacer
*****************.** **.  *.*.**

135. spacer 1.20|44444|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP021796 (Sinorhizobium meliloti strain USDA1157 plasmid accessoryA, complete sequence) position: , mismatch: 7, identity: 0.781

ctggtcgagctcgtcatagctaag-ggctagta	CRISPR spacer
ctggtcgagctcgtcatggcaaaaccgttggt-	Protospacer
*****************.** **.  *.*.**

136. spacer 1.27|44864|32|NC_006366|CRISPRCasFinder,CRT matches to MN693103 (Marine virus AFVG_25M539, complete genome) position: , mismatch: 7, identity: 0.781

ttaacgaaaggtttatttacagttcaaaatga	CRISPR spacer
attcaaaaaggtttatttacaattcaaagtga	Protospacer
 *   .***************.******.***

137. spacer 1.27|44864|32|NC_006366|CRISPRCasFinder,CRT matches to MT647605 (Pelagibacter phage Lederberg EXVC029P, complete genome) position: , mismatch: 7, identity: 0.781

ttaacgaaaggtttatttacagttcaaaatga	CRISPR spacer
attcaaaaaggtttatttacaattcaaagtga	Protospacer
 *   .***************.******.***

138. spacer 1.32|45164|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 7, identity: 0.781

gttaggttctggcggcggcgacacggcagaca	CRISPR spacer
gatggctcctgacgacggcgacacggcagacg	Protospacer
* *.* *.***.**.****************.

139. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KT264810 (Gokushovirus WZ-2015a isolate 62Brd02, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
ggatagacacagcaggccctttctgaggccaa	Protospacer
* *     ******** ***************

140. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249223 (Blackfly microvirus SF02 isolate 183, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagagagacagcagggcctttttgaggccaa	Protospacer
*.*.   .**************.*********

141. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH616876 (Microviridae sp. isolate ctdb54, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatagataccgcagggcctttctgaggccaa	Protospacer
* *     ** *********************

142. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KT264808 (Gokushovirus WZ-2015a isolate 60Brd01, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaagagtaacagcaggacctttttgaggccaa	Protospacer
* *.  .*********.*****.*********

143. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249230 (Blackfly microvirus SF02 isolate 195, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaagtggaacagcggggcctttttgaggccaa	Protospacer
* *..  ******.********.*********

144. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH992193 (Apis mellifera associated microvirus 32 isolate INH_SP_209, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatagtaacagccgggcctttttgaggccaa	Protospacer
* *   .****** ********.*********

145. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH029530 (Gokushovirinae environmental samples clone NHS-Seq427, complete sequence) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatcgaaacggcggggcctttctgaggccac	Protospacer
* * *  ***.**.*****************

146. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH029520 (Gokushovirinae environmental samples clone NHS-Seq287, complete sequence) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaatgtaacagccggccctttctgaggccac	Protospacer
*.**. .****** ** **************

147. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH992157 (Apis mellifera associated microvirus 3 isolate BeeCNH_SP_2675, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagcgttacggcagggcctttctggggccaa	Protospacer
*.*.* . **.**************.******

148. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH992174 (Apis mellifera associated microvirus 3 isolate IFH_SP_61, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagcgttacggcagggcctttctggggccaa	Protospacer
*.*.* . **.**************.******

149. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN582080 (Microviridae sp. ctjyu33, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatctcaacatcagggcccttctgaggaaat	Protospacer
* * ******* *******.********  *

150. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617760 (Microviridae sp. isolate ctba734, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaaagaaacagccgggcccttctgaggccac	Protospacer
*.**   ****** *****.***********

151. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH616722 (Microviridae sp. isolate ctcb819, complete genome) position: , mismatch: 7, identity: 0.781

gtaac-tcaacagcagggcctttctgaggccaa	CRISPR spacer
-tgacaccgacagcggggcctttctgagtccac	Protospacer
 *.** .*.*****.************* ***

152. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MG945608 (UNVERIFIED: Microviridae sp. isolate 4485-1602, complete genome) position: , mismatch: 7, identity: 0.781

-gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
cgagactt-acatcagggcctttctgcggccac	Protospacer
 * .***. *** ************* *****

153. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617312 (Microviridae sp. isolate ctbe736, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaaaccgactgcagggcctttctggggccac	Protospacer
*.** .*.** **************.*****

154. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH572460 (Microviridae sp. isolate SD_MC_24, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcaagatagcagcatcgcctttctgaggccaa	Protospacer
*.**  .*.*****  ****************

155. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249153 (Blackfly microvirus SF02 isolate 051, complete genome) position: , mismatch: 7, identity: 0.781

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
ggagctggacagcaggacctttttgaggccac	Protospacer
* *.** .********.*****.********

156. spacer 1.50|46244|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN694537 (Marine virus AFVG_250M1002, complete genome) position: , mismatch: 7, identity: 0.781

tgttagatttttgtatgggatcaggtactaca	CRISPR spacer
ggttagatttttgtatggaatcagttgaccca	Protospacer
 *****************.***** *. . **

157. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to HG796260 (Uncultured bacterium plasmid pRGI00100) position: , mismatch: 7, identity: 0.781

gtaagattgttttttctcctaattctgcatta--	CRISPR spacer
aaaagattattttttcttctaattct--attgat	Protospacer
. ******.********.********  ***.

158. spacer 1.3|43424|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP045971 (Listeria monocytogenes strain AUSMDU00000235 plasmid pAUSMDU00000235, complete sequence) position: , mismatch: 8, identity: 0.75

aggtctttttgcccgtttttttatcttcatgt	CRISPR spacer
aggtttttttgcacgtttttttaacaacaaag	Protospacer
****.******* ********** *  ** .

159. spacer 1.7|43664|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.75

gttaggtt---ccggaggcggtgacacggcggaca	CRISPR spacer
---cggccccgccggcggcggtgaaacggcggaca	Protospacer
    **..   **** ******** **********

160. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to AP013436 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C100-MedDCM-OCT-S26-C29) position: , mismatch: 8, identity: 0.75

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
caattatctgatgttgcaggattaactcctac	Protospacer
 . ************* *.******** .**

161. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to AP014254 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S23-C71, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
cttttatctgatgtagaaaaattaaaagacaa	Protospacer
  ************ ****.*****  * .**

162. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 8, identity: 0.75

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
ttaagttcccatcaaatgctgctgcaactgca	Protospacer
.* *    **************** ******

163. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 8, identity: 0.75

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
ttaagttcccatcaaatgctgctgcaactgca	Protospacer
.* *    **************** ******

164. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.75

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
ttaagttcccatcaaatgctgctgcaactgca	Protospacer
.* *    **************** ******

165. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to MH729874 (Klebsiella phage KP179, complete genome) position: , mismatch: 8, identity: 0.75

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
agtatatgccatcaaatgctactggaaaccgt	Protospacer
  **** *************.****** .  *

166. spacer 1.12|43964|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_AP018829 (Asticcacaulis excentricus strain M6 plasmid pASEM-1, complete sequence) position: , mismatch: 8, identity: 0.75

cttataagccatcaaatgctgctggaactgct	CRISPR spacer
cgctcaggccatgaactgctgctggaactgat	Protospacer
* . .*.***** ** ************** *

167. spacer 1.16|44204|32|NC_006366|CRISPRCasFinder,CRT matches to NC_049494 (Acinetobacter phage vB_AbaM_PhT2, complete genome) position: , mismatch: 8, identity: 0.75

cgccggtatatgacgctgaattaaattttata	CRISPR spacer
tgccggtctatgacgttgaattaaatgattgg	Protospacer
.****** *******.**********  *  .

168. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP012102 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-3, complete sequence) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tcttaattacttcctttccttcttcacagaat	Protospacer
*  .******** **** ********** * .

169. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KX349297 (Cyanophage S-RIM44 isolate W2_10_0709, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

170. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KX349293 (Cyanophage S-RIM44 isolate Np_20_0711, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

171. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KX349296 (Cyanophage S-RIM44 isolate Sn_13_0910, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

172. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to NC_047734 (Cyanophage S-RIM44 isolate Np_42_0711, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

173. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KU594607 (Cyanophage S-RIM44 isolate W2_07_0710, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

174. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KX349291 (Cyanophage S-RIM44 isolate ES_42_0910, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

175. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to NC_015288 (Prochlorococcus phage Syn1, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

176. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KX349295 (Cyanophage S-RIM44 isolate Sn_08_0709, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

177. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to KX349292 (Cyanophage S-RIM44 isolate Np_05_0604, complete genome) position: , mismatch: 8, identity: 0.75

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tctcaggaacttgctttgcttcatcacaaata	Protospacer
*  **.  ************** ***** **

178. spacer 1.24|44684|32|NC_006366|CRISPRCasFinder,CRT matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 8, identity: 0.75

tgtatttgtttttcaagctgctcaagctcaga	CRISPR spacer
ttaatttctttttcaagctgctcaatcttttt	Protospacer
*  **** ***************** **.

179. spacer 1.24|44684|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.75

tgtatttgtttttcaagctgctcaagctcaga	CRISPR spacer
cccatatagttttcaagctgcttaagctctga	Protospacer
. .** *. *************.****** **

180. spacer 1.26|44804|32|NC_006366|CRISPRCasFinder,CRT matches to MK249205 (Blackfly microvirus SF02 isolate 148, complete genome) position: , mismatch: 8, identity: 0.75

tcttccgtacttctcaccatactcaccacagt	CRISPR spacer
ccgtctatactgctcaccatactcgccacacg	Protospacer
.* **..**** ************.*****

181. spacer 1.29|44984|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP039845 (Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence) position: , mismatch: 8, identity: 0.75

tctacaaaagaggccataagagcaactctcaa	CRISPR spacer
gcaaaatcagaggccataagggcaactcgcac	Protospacer
 * * *  ************.******* **

182. spacer 1.32|45164|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 8, identity: 0.75

gttaggttc---tggcggcggcgacacggcagaca	CRISPR spacer
---cggcgcggatggcggcggcgacccggccgaca	Protospacer
    **. *   ************* **** ****

183. spacer 1.32|45164|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.75

gttaggttctggcggcggcgacacggcagaca	CRISPR spacer
gatcaattatggcggcggtgacacggcagcct	Protospacer
* * ..** *********.********** *

184. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to AP013379 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43) position: , mismatch: 8, identity: 0.75

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
tatctaaatcagttacaaaataattattgttg	Protospacer
* * .** *********** *********. .

185. spacer 1.47|46064|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to AP013701 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C100-MedDCM-OCT-S37-C199, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

taggcaagtgggataagccttacatgcaaaaa	CRISPR spacer
gtgatagttgggataagccttacatggaagaa	Protospacer
  *..*. ****************** **.**

186. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617088 (Microviridae sp. isolate ctca883, complete genome) position: , mismatch: 8, identity: 0.75

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaattgagacaccagggcctttttgaggccaa	Protospacer
* * .  .*** **********.*********

187. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617316 (Microviridae sp. isolate ctfh688, complete genome) position: , mismatch: 8, identity: 0.75

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaagagagacagcagtacctttctgaggccaa	Protospacer
* *.   .******* .***************

188. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617723 (Microviridae sp. isolate ctbe090, complete genome) position: , mismatch: 8, identity: 0.75

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagagaaacagcagcacctttctgaggccac	Protospacer
*.*.   ******** .**************

189. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK249212 (Blackfly microvirus SF02 isolate 163, complete genome) position: , mismatch: 8, identity: 0.75

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcagggctaccgccgggcctttctgaggccac	Protospacer
*.*.  * ** ** *****************

190. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
gaaatattgttttttcttctaattcttctaat	Protospacer
* ** ************.******** *

191. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN694146 (Marine virus AFVG_250M723, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
aaaaccacgttatttctccaaattctgcatta	Protospacer
. **   .*** ******* ************

192. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN183283 (Arthrobacter phage BossLady, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

193. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MF189176 (Arthrobacter phage Jordan, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

194. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MF189178 (Arthrobacter phage Shade, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

195. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KU160668 (Arthrobacter phage TaeYoung, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

196. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MT889388 (Arthrobacter phage Pippa, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

197. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MT114161 (Arthrobacter phage JKerns, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

198. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_041933 (Arthrobacter phage Sonny, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

199. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MK919479 (Arthrobacter phage Grekaycon, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

200. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_049468 (Arthrobacter phage Zartrosa, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

201. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KU160656 (Arthrobacter phage Martha, complete genome) position: , mismatch: 8, identity: 0.75

gtaagattgttttttctcctaattctgcatta-	CRISPR spacer
cgaacattggtttttctcctaattcc-tgttag	Protospacer
  ** **** ***************. ..***

202. spacer 1.3|43424|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 9, identity: 0.719

aggtctttttgcccgtttttttatcttcatgt	CRISPR spacer
tattctgtttgcctgtttttttatctttaata	Protospacer
 . *** ******.*************.*

203. spacer 1.3|43424|32|NC_006366|CRISPRCasFinder,CRT matches to MN657155 (Sporosarcina sp. strain ANT_H38 plasmid pA38H3, complete sequence) position: , mismatch: 9, identity: 0.719

aggtctttttgcccgtttttttatcttcatgt	CRISPR spacer
aggttttttcgcccgtttttttaaaaagcggt	Protospacer
****.****.*************       **

204. spacer 1.4|43484|32|NC_006366|CRISPRCasFinder,CRT matches to NC_048849 (Enterobacter phage vB_EclM_CIP9, complete genome) position: , mismatch: 9, identity: 0.719

tacgtctttagatgaggtcataaccacgtatt	CRISPR spacer
tccgtctttatatgagctcataacctgattac	Protospacer
* ******** ***** ********  .*  .

205. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to NC_013356 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence) position: , mismatch: 9, identity: 0.719

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
ggtttatctgttgttgaaagtttaccgcgaga	Protospacer
.********* ********* *** *    .*

206. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to NC_013785 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM402, complete sequence) position: , mismatch: 9, identity: 0.719

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
ggtttatctgttgttgaaagtttaccgcgaga	Protospacer
.********* ********* *** *    .*

207. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP003710 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252601, complete sequence) position: , mismatch: 9, identity: 0.719

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
ggtttatctgttgttgaaagtttaccgcgaga	Protospacer
.********* ********* *** *    .*

208. spacer 1.9|43784|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP003716 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402301, complete sequence) position: , mismatch: 9, identity: 0.719

agtttatctgatgttgaaagattaactgttaa	CRISPR spacer
ggtttatctgttgttgaaagtttaccgcgaga	Protospacer
.********* ********* *** *    .*

209. spacer 1.21|44504|32|NC_006366|CRISPRCasFinder,CRT matches to NC_014757 (Bacillus cereus VPC1401 plasmid pLVP1401 complete sequence) position: , mismatch: 9, identity: 0.719

tagcaattacttgctttgcttcttcacatatc	CRISPR spacer
tcttaattacttccttttcttcttcaccgaat	Protospacer
*  .******** **** *********  * .

210. spacer 1.24|44684|32|NC_006366|CRISPRCasFinder,CRT matches to MH617316 (Microviridae sp. isolate ctfh688, complete genome) position: , mismatch: 9, identity: 0.719

tgtatttgtttttcaagctgctcaagctcaga	CRISPR spacer
gcagatggattttcaagctgctgaggctcaga	Protospacer
   . * * ************* *.*******

211. spacer 1.26|44804|32|NC_006366|CRISPRCasFinder,CRT matches to MK249146 (Blackfly microvirus SF02 isolate 036, complete genome) position: , mismatch: 9, identity: 0.719

tcttccgtacttctcaccatactcaccacagt	CRISPR spacer
acggaaataattatcaccatactcaccacaat	Protospacer
 *    .** ** *****************.*

212. spacer 1.26|44804|32|NC_006366|CRISPRCasFinder,CRT matches to MH617089 (Microviridae sp. isolate cthd782, complete genome) position: , mismatch: 9, identity: 0.719

tcttccgtacttctcaccatactcaccacagt	CRISPR spacer
acgaaaataattatcaccatactcaccacaat	Protospacer
 *    .** ** *****************.*

213. spacer 1.33|45224|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN693412 (Marine virus AFVG_25M431, complete genome) position: , mismatch: 9, identity: 0.719

attaacagccttcatcatttccaagcccgcag	CRISPR spacer
agttacagccttcattatttcccagcctttca	Protospacer
* * ***********.****** ****. . .

214. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

215. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

216. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

217. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

218. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

219. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

220. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

221. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

222. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

223. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

224. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

225. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

226. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014865 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

227. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

228. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

229. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

230. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

231. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

232. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

233. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

234. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

235. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

236. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

237. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

238. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

239. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
atagagcagtacatacaagataatattattga	Protospacer
 *******.*******.*******  **.

240. spacer 1.44|45884|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032413 (Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctaggagagttataaatgctgatgttgcta	CRISPR spacer
aactctttcagttataaatgctgatgaagcta	Protospacer
 .**     *****************  ****

241. spacer 1.44|45884|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020864 (Paenibacillus sp. Cedars plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctaggagagttataaatgctgatgttgcta	CRISPR spacer
aactctttcagttataaatgctgatgaagcta	Protospacer
 .**     *****************  ****

242. spacer 1.44|45884|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN694547 (Marine virus AFVG_250M388, complete genome) position: , mismatch: 9, identity: 0.719

tgctaggagagttataaatgctgatgttgcta	CRISPR spacer
aaaaactaaagttatcaatgctgatgttgata	Protospacer
 .  *  *.****** ************* **

243. spacer 1.47|46064|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY503037 (Pseudomonas fluorescens strain PC24 plasmid pPHE24, complete sequence) position: , mismatch: 9, identity: 0.719

taggcaagtgggataagccttacatgcaaaaa	CRISPR spacer
ctggcaagtgggataatccatacatcttagta	Protospacer
. ************** ** ***** . *. *

244. spacer 1.47|46064|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029091 (Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taggcaagtgggataagccttacatgcaaaaa	CRISPR spacer
ctggcaagtgggataatccatacatcttagta	Protospacer
. ************** ** ***** . *. *

245. spacer 1.47|46064|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027167 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

taggcaagtgggataagccttacatgcaaaaa	CRISPR spacer
ctggcaagtgggataatccatacatcttagta	Protospacer
. ************** ** ***** . *. *

246. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH572421 (Microviridae sp. isolate SD_MC_21, complete genome) position: , mismatch: 9, identity: 0.719

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
aaggagaaacagaaggacctttctgaggccaa	Protospacer
. ..   ***** ***.***************

247. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MG945914 (UNVERIFIED: Microviridae sp. isolate 8858-1602, partial genome) position: , mismatch: 9, identity: 0.719

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gcacagagacagcggggcctttctgcggccac	Protospacer
*.*    .*****.*********** *****

248. spacer 1.48|46124|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MH617039 (Microviridae sp. isolate ctda820, complete genome) position: , mismatch: 9, identity: 0.719

gtaactcaacagcagggcctttctgaggccaa	CRISPR spacer
gaatactcacacccgggcctttctgaggccac	Protospacer
* *  .. *** * *****************

249. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020032 (Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence) position: , mismatch: 9, identity: 0.719

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
tgagtattgttttttctccaaattcagcaaat	Protospacer
  *. ************** ***** ***

250. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 9, identity: 0.719

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
gatgctttgttttatcttctaattctgcagtt	Protospacer
*  .  ******* ***.*********** *

251. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 9, identity: 0.719

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
gatgctttgttttatcttctaattctgcagtt	Protospacer
*  .  ******* ***.*********** *

252. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to AP014299 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C45, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
gatctattaatttttctcctaattctgcgtct	Protospacer
*    ***. ******************.*.

253. spacer 1.25|44744|32|NC_006366|CRISPRCasFinder,CRT matches to NZ_CP010419 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50d, complete sequence) position: , mismatch: 10, identity: 0.688

aataccggcacattcacggtgtaggtgcacat	CRISPR spacer
atgggcggcaccttcacggtgaaggtgccgcc	Protospacer
*  . ****** ********* ******   .

254. spacer 1.32|45164|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KX683428 (Mycobacterium phage TBond007, complete genome) position: , mismatch: 10, identity: 0.688

gttaggttctggcggcggcgacacggcagaca	CRISPR spacer
caacggtcctggcggcggcggcacggcgtccg	Protospacer
    ***.************.******.  *.

255. spacer 1.32|45164|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_042325 (Mycobacterium virus Pixie, complete genome) position: , mismatch: 10, identity: 0.688

gttaggttctggcggcggcgacacggcagaca	CRISPR spacer
caacggtcctggcggcggcggcacggcgtccg	Protospacer
    ***.************.******.  *.

256. spacer 1.33|45224|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050075 (Enterobacter kobei strain 070 plasmid p070_A-KPC-2, complete sequence) position: , mismatch: 10, identity: 0.688

attaacagccttcatcatttccaagcccgcag	CRISPR spacer
caaaacagccttcaacctttccaagcagcttg	Protospacer
   *********** * *********   . *

257. spacer 1.33|45224|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to MN175386 (Klebsiella pneumoniae strain KP-13-14 plasmid pKP-13-14-NDM-9, complete sequence) position: , mismatch: 10, identity: 0.688

attaacagccttcatcatttccaagcccgcag	CRISPR spacer
caaaacagccttcaacctttccaagcagcttg	Protospacer
   *********** * *********   . *

258. spacer 1.38|45524|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_019773 (Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence) position: , mismatch: 10, identity: 0.688

ttagagcaatacatacgagataattatacgcc	CRISPR spacer
attaagcaatacatccgaaataattatggcaa	Protospacer
 * .********** ***.********.

259. spacer 1.39|45584|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019369 (Silvanigrellales bacterium RF1110005 plasmid 79K, complete sequence) position: , mismatch: 10, identity: 0.688

tgttttatagtgagattcgtttaagtctgata	CRISPR spacer
aattttataatgagattcttttaagaagaaag	Protospacer
 .*******.******** ******   .* .

260. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KY554763 (Lactococcus phage LW32, complete genome) position: , mismatch: 10, identity: 0.688

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
gttacaattcagttacattttaatctctttct	Protospacer
 ****************  *****. .* .

261. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_049806 (Lactococcus phage LW31, complete genome) position: , mismatch: 10, identity: 0.688

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
gttacaattcagttacattttaatctctttct	Protospacer
 ****************  *****. .* .

262. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KY554765 (Lactococcus phage LW4, complete genome) position: , mismatch: 10, identity: 0.688

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
gttacaattcagttacattttaatctctttct	Protospacer
 ****************  *****. .* .

263. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to KY554764 (Lactococcus phage LW33, complete genome) position: , mismatch: 10, identity: 0.688

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
gttacaattcagttacattttaatctctttct	Protospacer
 ****************  *****. .* .

264. spacer 1.45|45944|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NC_049805 (Lactococcus phage phiQ1 DNA, complete genome) position: , mismatch: 10, identity: 0.688

tttacaattcagttacaaattaattattgcaa	CRISPR spacer
gttacaattcagttacattttaatctctttct	Protospacer
 ****************  *****. .* .

265. spacer 1.52|46364|32|NC_006366|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 10, identity: 0.688

gtaagattgttttttctcctaattctgcatta	CRISPR spacer
ttttttcaattttttctaataattctgcatta	Protospacer
 *    . .********  *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50516 : 59382

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011212641.1\|50516_53912_-	type I-F CRISPR-associated helicase Cas3	A0A2I7RCU8	Vibrio_phage	3.8e-102	30.3
WP_011212642.1\|53908_54877_-	type I-F CRISPR-associated endonuclease Cas1	A0A2D0YFC9	Vibrio_phage	3.3e-51	39.2
WP_011212643.1\|55063_55336_-	recombinase family protein	A0A219Y912	Aeromonas_phage	7.0e-07	46.1
WP_011212644.1\|55405_56383_-	hypothetical protein	NA	NA	NA	NA
WP_011212645.1\|56807_58085_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.2e-94	45.6
WP_011212646.1\|58071_58578_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.3e-27	44.4
WP_011212647.1\|58713_59382_-	SOS response-associated peptidase	A0A1P8CX02	Bacillus_phage	9.1e-24	39.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_006369

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_006366

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection