CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009497	Mycoplasma agalactiae PG2, complete genome	2 crisprs	NA	0	0	1	0

1. NC_009497

CRISPR-Cas detection and classification

Crispr_ID: NC_009497_1

• CRISPR_ID: NC_009497_1
• CRISPR_location: 766315-766414
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_009497_1

Consensus_repeat	Method
ATGTAACTAATATGAGTTTTATGTTT	CRISPRCasFinder

spacers of NC_009497_1

>1.1|766341|47|NC_009497|CRISPRCasFinder
CATGGTGCAACTAATTTTAATAGTTCATTATTTGATGATACAAAAAA

CRISPR arrays and Neighbor proteins around NC_009497_1

CRISPR arrays

The CRISPR arrays of NC_009497_1

>merge|NC_009497|1|766315-766414|CRISPRCasFinder
ATGTTACTGATATGAGCCACATGTTTCATGGTGCAACTAATTTTAATAGTTCATTATTTGATGATACAAAAAAATGTAACAAATATGACTGCTATGTTTA

>NC_009497|1|1|766315-766414|CRISPRCasFinder
ATGTTACTGATATGAGCCACATGTTT	CATGGTGCAACTAATTTTAATAGTTCATTATTTGATGATACAAAAAA
ATGTAACAAATATGACTGCTATGTTTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009497.1|WP_011949807.1|770082_770895_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_009497.1|WP_154644752.1|761121_761283_-|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_011949794.1|757493_758339_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|369792
NC_009497.1|WP_041308780.1|761368_761668_-|variable-surface-lipoprotein	unknown	unknown	unknown
NC_009497.1|WP_011949813.1|777868_778681_-|NAD(+)-synthase	unknown	unknown	gnl|CDD|238309
NC_009497.1|WP_011949793.1|756086_757148_-|phosphotriesterase	unknown	unknown	gnl|CDD|224649
NC_009497.1|WP_041308783.1|773258_776009_-|C1-family-peptidase	unknown	unknown	gnl|CDD|239110
NC_009497.1|WP_011949812.1|777128_777866_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|234640
NC_009497.1|WP_011949798.1|762018_762471_+|DUF4065-domain-containing-protein	unknown	unknown	gnl|CDD|226128
NC_009497.1|WP_011949811.1|776118_777126_-|ZIP-family-metal-transporter	unknown	unknown	gnl|CDD|308248
NC_009497.1|WP_011949800.1|763219_764419_-|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NC_009497.1|WP_011949795.1|758511_760779_-|hypothetical-protein	unknown	unknown	gnl|CDD|227604
NC_009497.1|WP_011949799.1|762473_762863_+|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_011949814.1|778795_779701_-|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_011949792.1|754224_756033_-|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl|CDD|236502
NC_009497.1|WP_011949816.1|780657_781998_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl|CDD|225174
NC_009497.1|WP_011949815.1|779702_780626_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NC_009497.1|WP_011949796.1|760840_761164_-|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_154644753.1|770884_771859_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_009497.1|WP_011949806.1|768156_770022_-|hypothetical-protein	unknown	unknown	gnl|CDD|224567

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009497.1|WP_011949807.1|770082_770895_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.47818e-22
NC_009497.1|WP_011949794.1|757493_758339_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	8.9782e-51
NC_009497.1|WP_011949813.1|777868_778681_-|NAD(+)-synthase	gnl|CDD|238309	cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .	2.33295e-92
NC_009497.1|WP_011949793.1|756086_757148_-|phosphotriesterase	gnl|CDD|224649	COG1735, Php, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	1.92609e-117
NC_009497.1|WP_041308783.1|773258_776009_-|C1-family-peptidase	gnl|CDD|239110	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues.	3.23666e-26
NC_009497.1|WP_011949812.1|777128_777866_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl|CDD|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	2.40919e-114
NC_009497.1|WP_011949811.1|776118_777126_-|ZIP-family-metal-transporter	gnl|CDD|308248	pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family.	1.89707e-08
NC_009497.1|WP_011949798.1|762018_762471_+|DUF4065-domain-containing-protein	gnl|CDD|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	1.0647e-28
NC_009497.1|WP_011949800.1|763219_764419_-|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.18533e-06
NC_009497.1|WP_011949795.1|758511_760779_-|hypothetical-protein	gnl|CDD|227604	COG5279, CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning].	2.01815e-12
NC_009497.1|WP_011949792.1|754224_756033_-|PTS-ascorbate-transporter-subunit-IIC	gnl|CDD|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	9.23265e-124
NC_009497.1|WP_011949816.1|780657_781998_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl|CDD|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	5.5806e-104
NC_009497.1|WP_011949815.1|779702_780626_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.70029e-11
NC_009497.1|WP_154644753.1|770884_771859_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.11487e-20
NC_009497.1|WP_011949806.1|768156_770022_-|hypothetical-protein	gnl|CDD|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	0.00871754

Protein sequences

>NC_009497.1|WP_011949800.1|763219_764419_-|BspA-family-leucine-rich-repeat-surface-protein
MKVKLRNFISISSLSSLLLMPLVAASCKKNDNGNNNKVISEGSNSKRMTPPNLSNDENKNGGESSNVEGNLPNTDLSEKSDTMNKEFKLEEKDINNELNNSEIPSDQPIESNNSRATYSDDEVRRNAEAEARKLEEAKKKQQEEERKLKEAEDKKNVVEIQKIVEEQKDAFGSFHSQKDFVDQINVYAKDKKISGLTLQNEEDGNKSLAVDTDGGKKNKIKLQLGSQKFEVNLGIVLKDAVITKFYYEDNHQQGQVMNNLLKANGDSIINKTWTNYKNGKNIVIKQLGYHRDHTGIKLTVVPHYTSKVPKHLPLKISSINLSFYNLESLKIDNINEWDLSNVQNAGQAFLNAKHFSQDLSQWKLKSGANTQKIFEKANKMNEHLDKIAKTWNVEVSKLK
>NC_009497.1|WP_011949799.1|762473_762863_+|hypothetical-protein
MSKKLTNKTLNGLKSSLVSDWKSIYFRFAIVHKLDNGFDFKSLNAAELGKFHNFINEIFKRKMTISDVEKNYMRKHAKPLANRRMEAQDIEVNEIHLGKDNNSFRIFGYLNKDNYFVLTKIDPKHRYHK
>NC_009497.1|WP_011949798.1|762018_762471_+|DUF4065-domain-containing-protein
MRNKYSYKDISGWFLSKESMTPKKLQKLTYYAEAWAYALLDDGILKDTAFQAWIHGPVSPELWKDYRDYGWNEIEKKAFDESKLDKNVLELLDAVWTTYGDKSGYELEAVSHSEEPWKNARKGLGEFEASNRLISPDDMRNYYKSIYSGD
>NC_009497.1|WP_041308780.1|761368_761668_-|variable-surface-lipoprotein
MNRRNKHIMFLGSLITLGSIPFIAAKCNDGSTKEESKNNETRPTNSSSNQNQNKNGDTNGQGQAKNDKDNLVNNNNNNNSSTNSNSETTNHNSNPTPLS
>NC_009497.1|WP_154644752.1|761121_761283_-|hypothetical-protein
MSDSMQSDEPGKSDDVMNDTEENNSEGKNKKPKKSLIFYLCHLINMATTLKSI
>NC_009497.1|WP_011949796.1|760840_761164_-|hypothetical-protein
MSFNKYGNDIKKHLESAETILMINNDLDPSYKIVKYEFNNIKSLLSSTGFESNFIDSLISDLFEFYDTLSLLATPSYANNSDKQKASELFKKVKSKIDEAYKKAFNK
>NC_009497.1|WP_011949795.1|758511_760779_-|hypothetical-protein
MKRIKKCYVNLALACSFSSVFASASCIAKGTDSSSNVINNSVNIVNSLTPSSNEFNAEHNTENAAENRNRSKAPSNDQKAYETATPVSSQIIYNSINRTILGPEVIDISNIQSISSVESRVPELDSFYIEHTKKDFVEKELSESQIESMILNYGVSPNFYSHPKYTIDAQNIRLDSNGAQTIKLNLIDSKTKEKVTDDVQWYQRNWYATKEVAKAGEDVSDGKLTLTSDGNIKGKSHTKNDFGKVQVWAHYKGYLYSTMVDVDSVDLTKSISENAQARARAKDIAKEWQGLPTLEKITEAYKWMTKNVKYDYSQTNLVDDQSAYSALVKLSTVCTGYAKGFKMIMDELGVPCKFISGTADYGTLTGHITNHAWNLVEVDGVWYHVDATSDRAEKENEGKFNFFMMNDDDFIKASIFNRGIVKTGERFRNLKISNYVNSKDDILVSIDRQLGGMDKLPSSIKFNVAPSSYKNVLEAFKTAELELNETRPTAKITHPYVTYDEITYYFNQPSKQIELKNVNASVKKHTLSNKELGQYALKVKINNSDNNIDLKPGNFIVKNAYVKEAIKDNDGYTLILDHFSKYGDVEVELEDIKKLGFKFDISNKKVNFNVIKNQKPAATINAVGENRIKVSGVNSNMEYRNNSNEWKSFEHDNQVLDKVFLGNFSIRVKNTNNSLESDIQDFVITKGRDLDKIVKKYNSNMLIGVDSTMEYRLKDATEWTPITTTKLTLNPGEYLVRVAPNNNELASEALKVVIS
>NC_009497.1|WP_011949794.1|757493_758339_+|Cof-type-HAD-IIB-family-hydrolase
MSKINLNNIKYIFFDLDGTLLTKDKLITDEVTNKIRELSKNHQVIINTGRPWYMAQKFYKQLDLKTPFLGLNGALVYDFESKKVLYQNPMSMETSLKLLNLILKYEIAFLIYLDDEMIGVQKFKHPWFEKVVYPKNEFSAKFTEINDPVNQLKLEKPVIKFLLLIDTLTESQLETLKQEIESISDEIYTVRSQKACLDVMPKGSDKGTAIEWFKNNYLNHEDISKNSIMFGDAANDIPAFEKVAYSCVLKSSSLEAENAANYVVCSSTENGIIEFFEKHTN
>NC_009497.1|WP_011949793.1|756086_757148_-|phosphotriesterase
MAKDKFVRTVLGDVPAESIGITDCHDHLIKNGGPEMHEHPDFLMIDVEAAKKEVQEYVDHGGKTIVTMDPPNVGRDVYRMLEIAEAFKGKANIVMSTGFHKAAFYDKYSSWLACVPTDDIVKMMVAEVEEGMDEYNYNGPVVKRSKAKAGIIKAGTGYAAIDRLELKALEVAARTSITTGCPILVHTQLGTMALEVAQHLIGFGANPRKIQLSHLNKNPDRYYYEKIIKETGVTICFDGPDRVKYYPDSLLADHIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKGKETFGLSYLFERFIPLLKQVGVSQEAIDDILINNPREILAFDEPRVYDASKVSSEVVQLKKDLKLL
>NC_009497.1|WP_011949792.1|754224_756033_-|PTS-ascorbate-transporter-subunit-IIC
MQETSNKSKKPFNWKVLVGVLVAILIVLAIYVGALAAKQWDFKAGTLFFIKDIMLNNFLGINAILIGLLVFIGYLILGRGFSGIVIGTMKAIIGVLLLQIGSGALVGLAKPIFAAFQKFSGTSVIPLDTYSGQVSAGKFLDAVGNGFSSWVSYALIIGLFVNIILIALRKWTNVHSLMITGHVMFQQAAVVVPIVFLLMFSKDAGLIDDKEIVSLGAQLGTIIFSGLLLGTYWGVASSATIKGTDAVTQNAGFAVGHQQMFGVAIAYKIGKYFGKAEQSSENRKMPKGLKVFEDNIFTQAMLILLVFLILILIIQFAPGLDESVRFAGKDGLVTKEYNSWKVGGGSAFWVVQLILGSFQLVSAIIAIQTGVRMFVSELQQSFQGISDKLVPGALVAVDVAATYGFSPNSVTFGFISGTVAQFVGVAVVIGLSRIPGSFSIPIVIPLFITLFFNSGSIGVFANASGGYKATLAVPAIFGFLEIIIIALGLGMVNSFGLKSSGLVVSATLDKESIDYLTHGPFFTGFNGMFDWNFIFGLLMIIGGGHPIAAYIVFPLYLVGMLVLAQIIDTARQHKPTSLQKLFKIKPTLLEQPVAEEAATQNA
>NC_009497.1|WP_011949806.1|768156_770022_-|hypothetical-protein
MKKILIKAGAILLPAAAGLSVVACGNTEEEKVVFRLGQGKGWPLSLSLQKVIGYYNETFKNDPDFLTIRFEFADDFKYKDSKGKEVKVPGHNTYSEYQLIKNVAHAIESKDNKKVPNIVLGDQSGAYILNQNKQLLDISDTGITKKSFSKNIANLHSILAGQGQTETIYNIPFDNADTDSLQLNLKVLHKMFEIIESGGGKIEDKDKDGIIKKVYDSKNKGNQLPEQSIWHALKAKNGENSKKVFEGLTVSNKTFESIKDIRDLAAKFTEGVEIEKDKINDNTISGEVLSIDYQQSTFFKELHAKIEDKNKAIFELDKDKNVKYNLIDDADVKKKFQELWKDYNDSIKRVEQTPSGKAEKDKKVFQSMKYMFTQTKEWGSWQIFRFQSAISFAASVGAYQNKITQFTKTHPYFEQSIKDDPKFLTNNASEHDVLMLPQVTGTKDGKHSIFHEGGSSIIAIDSKNEKVNKAIKKFLKWIYTGKNKVSGEEEDNWYTIARTSGYIMPLASVVTSATNDKIKGIIKELEGKLKDKKSEELMTTFEPDYFKLNMLRSAQLSLESLLNVESGKVVAKPAVTDDKSSQMSDTVMKAMIEQTELDRIQGFKAKTADELITAFEQTKKQ
>NC_009497.1|WP_011949807.1|770082_770895_-|carbohydrate-ABC-transporter-permease
MPGRMLLVIFKEIIKYFLIGFLCLLMLFPLYYLLLQSLMSTNSLINNRTFIVIEEWNWVNFATAFKSNFLRAFGWTLLFATILILIRLIIYSLAIAGLFRMSAKYQKVFLYFFLVISLIPEFSIFLSLKTVLLTFNLDETPIAFVTNAIFSFFNFTYIFNLAKSISDKKNKTMLNDNLKPMDKLIYVYLPKMKLGYMLLIVFSFISVWNDYLWPQFLFSTNYTNISIWYLTLGQDRQAALLNVQAAGAFISIVIPLIIYFIFSKKISRFN
>NC_009497.1|WP_154644753.1|770884_771859_-|sugar-ABC-transporter-permease
MHNSESKKQKVWTVSKITLMLLPLLIFILVFTLVPILHTFVKSLKAPISIHDRTRYNYNFNNYNNILSDPNFKNAVLNSTLVLFFGSGISLVLSLIFALVVNSLISKFTQRAFLTILFSQFFISGFAIGIAFTMFFGNKNLFFYILGKSEYTFIASSNKKLPIWMYYSIFQIWRSLPFNLILFASAISRADLKYKKLMLNDKLTILQKFRYVYMPEISKVLFSILFTNFIFSTLLLPQALLEPTFDIDINYAHTLTSYTIKFLGFGTNNPSLRYEKGYASAFFSFSYLVLLLCILQLLRISTIKAIYRKISKLIAKTRSKKYAR
>NC_009497.1|WP_041308783.1|773258_776009_-|C1-family-peptidase
MVNLARNKKGSIFLGKIMFFAPFASVFSLSTSLSAKRQNTTNNESSNEKHKNAYFSLRDDYILFNQYQYNTGLCWDFSATKSLETALMINTNEMYDFSEASITINDTNNVGGGSWFDDYDRLISRYGISYESDFKFGDLYYVPNKGIYHQKLRDLFNKHIHKNFRKAVERVDFNRYDYENIKKHIVKNGSLFVAIKGYKTVSNDKYYNEVTTKSNSKIKVHELVGTGRENTHAVSIIGWDDNYKATDGSTGAWIILNSDNLYSNRDGVNFLPYNSSAVINDFNGYKYVGKNILISESNANYENEFSNYYNSANYGTKSKNTFAKNRNIFKSTQGVKIEYKINQNVAKLNSIFAKVYQDGVDVSAYFNIEYVKNEGVKLHSKSPLKSGTYSVKLIYDYNLINGNEHHSDSQTRQIYVLDGTEAIQANSYWTISNNSHIVFHANNSYVLNNHTPVILASKSNEVNFNNRLLYTNSKNEENTYFKVNDDKLQDSKVNSFLAKYKDDSFEADVSAFFGNSLASKRKYRFYRLDEKAKYTFTKLYFDLDGAKTDSLVTEVPFSESGALSKHYLPNLKKDNSEFLKYTYINKNGVESDLPFDTYKNKYYVTYNHIKDLKTNVLEFNYIGNRQKGNNQTYANPIIVKAIFDTKKEAKIVGSNLKSSYKALETINLQDVNISVENNGNIEFVKPTKVNYQSSQHINYGDSKIVLEYEFNGKKYVYEHSINVEKLIIDAPKNFENKFVYDGHEHNLGLDKFSFKTDVLVNDLKHIDSSKYQSSIKIKNKNYSFAEGKNELVYEWEILPKVISKNSIIDKSILKFDDEVLYSFDKLNFNEYKSSNQLLSASSPIVYFKYKDDKNHNSKELLEIDLSNYNIKPVENSNKRKSTVIIASSVTASAVGITVALVLSAIFIKKNKNKKVN
>NC_009497.1|WP_011949811.1|776118_777126_-|ZIP-family-metal-transporter
MTKFWNVLYSSLGYNQPLAIFIAILVVFVLIAIIPFLVNLIFAFTKEKLNSKGTVLLYAFMCGFFLTMANFGFLKESLEISSINASAILNSDFKIYGWNILVVVGGLIIGIGFAALVRQLVRKSINSKIATDKSARLFLHSHDIGHDHSDMDHHEHEIAPSHDIQISSNAQSKPAYKLVAILLLLLHRIPEGFLIGFIIIGIESKGITSTSVAFLISLILHLIPEQVLFYYRQREMGWSRAKALFISTLCLFLFLPAMLLGGYLGKHIYSIWQLRAMVQSFIAGIFIFISILEFLPEFYHAHHDKKLFFWTIFVFMVGIIFCAFVLAFHKHGQGI
>NC_009497.1|WP_011949812.1|777128_777866_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSHWAGIKHKKGANDAARGKIFQKMFKEIYVAATGPGGTDPSSNPALRLAISKAKAKSMPKANIERALDKAKGNAKDGAVFTEIIYNATISGGATFLVITLSDNVNRTTSNIQSYFNKQNAKLGKTGTIPFQFDHKGIMEISKSLVDEESLTIVCLENGAEDIEATDESFIITTSVEDFSTCKSAIESNLNITEFMQCEITYLPNATVTFTGEKAQKIQDFIAKLEDDDDVQEVFHNIEFEE
>NC_009497.1|WP_011949813.1|777868_778681_-|NAD(+)-synthase
MNKRIGLRVDNSFNSPFDNEKVKIYAEYLVSWIKRRVKRAKAKGCVVGISGGIDSALVASLCAKAFPNNTLGLVMPIDSMNHDLEDISKLERTINLKFKTVLLNKSFDEVKKSLNNEVDNLLSISNIKPRLRMIALYAYAQQNNYLVMGTDNQDEYFIGYFTKHGDGGVDLLPISKLLKSEVRMMAKYLNVPESIINKKPSAGLWEGQSDEDELGFTYHELDSYLLDDKADIRPNSVAKIERMHKYSMHKRNKAGMPLSIDEVLKRKRKE
>NC_009497.1|WP_011949814.1|778795_779701_-|hypothetical-protein
MNYEQFEQDLKFSLLNNNAKKLIYKLAEAPYRFISFLSPLNFKTKLEQSFYRSQENKYYKFLSNCSVNIFSESPYEIAENSVSVTKFSADNPDEQIIESARFTFAFKDEENKKYYFIKQRKRDVFSANEAIKVWDKFKNDVELAKQSFADYKIIGILWFVDSEFRNNQQYYNSGSLVEDDLDINISAKYGFELFKDFELHEKWIEIELHLDKFKRQNYTDFLDFPNLDKDPEALEALIELSDSAWEKLNSPTPVYMAIRSAIFNEADENSNLFKALKLRDIKANMVDEDGLKLALMKLQSK
>NC_009497.1|WP_011949815.1|779702_780626_-|alpha/beta-hydrolase
MRMNYVNFKDQKMSVYSKNNKYDTTILFLHGLNSNSSFIDNLLEYDNKFNIVSVNFPGSKYAPDIDPEDIILDDWIELAKAVLKGIKSKHIHILAHSMAGGVAVELAKDPRVEKVFMLATINPTMTENKSYKLLHNVIGPQTGKPSMFGKLFVWGAKFFKKGKRLIDSFSRKGKWYNLLDKYILQPSFMEKLDKQYREVTKKLIFIIGDKDSIIGTDNFINYANELNCPAVKIGETHSPIKVAGKQMSNFLNMLVISKKVHWPFNKFITFSKNIINVGVSNDADDEDAVEEILDQLNKNGEIELEKQ
>NC_009497.1|WP_011949816.1|780657_781998_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MKLQNNTVVKNVIAVDHSYEGLGTVKTDDYPIFVENLLPGERADILIKKANSKFAFAKVIKRYNESTKRIKVVNEKLMESGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKSDYEWRYRNKLLLFTKNVQNTIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKNINKYDCFKNVKNALTSITLRESYVNKKIMLYFTASKAFDLSKQFVNDIAKEFENIETIMVIVNDKVVYSYLSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKVVLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFISGDVIKTIDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVLKLKDAKRTIRKDH

Crispr_ID: NC_009497_2

• CRISPR_ID: NC_009497_2
• CRISPR_location: 766610-766782
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_009497_2

Consensus_repeat	Method
ATGTAACTAATATGAGTTTTATGTTT	CRISPRCasFinder

spacers of NC_009497_2

>2.1|766636|46|NC_009497|CRISPRCasFinder
AATGGCGCAAAATCATTCAACAGTGAGATATTTCGGGATGTTAGAT
>2.2|766708|49|NC_009497|CRISPRCasFinder
GCAAAAGCTGTTACATTTGACCAAGATATTTCTTTTTGGGATACTCAAT

CRISPR arrays and Neighbor proteins around NC_009497_2

CRISPR arrays

The CRISPR arrays of NC_009497_2

>merge|NC_009497|2|766610-766782|CRISPRCasFinder
ATGTAACTAATATGAGTTTTATGTTTAATGGCGCAAAATCATTCAACAGTGAGATATTTCGGGATGTTAGATATGTAACTGATATGAGTTTTATGTTTGCAAAAGCTGTTACATTTGACCAAGATATTTCTTTTTGGGATACTCAATTTGTGACTAATATGGAATCAATGTTC

>NC_009497|2|2|766610-766782|CRISPRCasFinder
ATGTAACTAATATGAGTTTTATGTTT	AATGGCGCAAAATCATTCAACAGTGAGATATTTCGGGATGTTAGAT
ATGTAACTGATATGAGTTTTATGTTT	GCAAAAGCTGTTACATTTGACCAAGATATTTCTTTTTGGGATACTCAAT
TTGTGACTAATATGGAATCAATGTTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_009497.1|WP_011949807.1|770082_770895_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_009497.1|WP_154644752.1|761121_761283_-|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_011949794.1|757493_758339_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|369792
NC_009497.1|WP_041308780.1|761368_761668_-|variable-surface-lipoprotein	unknown	unknown	unknown
NC_009497.1|WP_011949813.1|777868_778681_-|NAD(+)-synthase	unknown	unknown	gnl|CDD|238309
NC_009497.1|WP_011949793.1|756086_757148_-|phosphotriesterase	unknown	unknown	gnl|CDD|224649
NC_009497.1|WP_041308783.1|773258_776009_-|C1-family-peptidase	unknown	unknown	gnl|CDD|239110
NC_009497.1|WP_011949812.1|777128_777866_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|234640
NC_009497.1|WP_011949798.1|762018_762471_+|DUF4065-domain-containing-protein	unknown	unknown	gnl|CDD|226128
NC_009497.1|WP_011949811.1|776118_777126_-|ZIP-family-metal-transporter	unknown	unknown	gnl|CDD|308248
NC_009497.1|WP_011949800.1|763219_764419_-|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl|CDD|308794
NC_009497.1|WP_011949795.1|758511_760779_-|hypothetical-protein	unknown	unknown	gnl|CDD|227604
NC_009497.1|WP_011949799.1|762473_762863_+|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_011949814.1|778795_779701_-|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_011949792.1|754224_756033_-|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl|CDD|236502
NC_009497.1|WP_011949816.1|780657_781998_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl|CDD|225174
NC_009497.1|WP_011949815.1|779702_780626_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NC_009497.1|WP_011949796.1|760840_761164_-|hypothetical-protein	unknown	unknown	unknown
NC_009497.1|WP_154644753.1|770884_771859_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_009497.1|WP_011949806.1|768156_770022_-|hypothetical-protein	unknown	unknown	gnl|CDD|224567

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_009497.1|WP_011949807.1|770082_770895_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.47818e-22
NC_009497.1|WP_011949794.1|757493_758339_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	8.9782e-51
NC_009497.1|WP_011949813.1|777868_778681_-|NAD(+)-synthase	gnl|CDD|238309	cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .	2.33295e-92
NC_009497.1|WP_011949793.1|756086_757148_-|phosphotriesterase	gnl|CDD|224649	COG1735, Php, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	1.92609e-117
NC_009497.1|WP_041308783.1|773258_776009_-|C1-family-peptidase	gnl|CDD|239110	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues.	3.23666e-26
NC_009497.1|WP_011949812.1|777128_777866_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl|CDD|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	2.40919e-114
NC_009497.1|WP_011949811.1|776118_777126_-|ZIP-family-metal-transporter	gnl|CDD|308248	pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of zinc transport proteins and many putative metal transporters. The main contribution to this family is from the Arabidopsis thaliana ZIP protein family these proteins are responsible for zinc uptake in the plant. Also found within this family are C. elegans proteins of unknown function which are annotated as being similar to human growth arrest inducible gene product, although this protein in not found within this family.	1.89707e-08
NC_009497.1|WP_011949798.1|762018_762471_+|DUF4065-domain-containing-protein	gnl|CDD|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	1.0647e-28
NC_009497.1|WP_011949800.1|763219_764419_-|BspA-family-leucine-rich-repeat-surface-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.18533e-06
NC_009497.1|WP_011949795.1|758511_760779_-|hypothetical-protein	gnl|CDD|227604	COG5279, CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning].	2.01815e-12
NC_009497.1|WP_011949792.1|754224_756033_-|PTS-ascorbate-transporter-subunit-IIC	gnl|CDD|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	9.23265e-124
NC_009497.1|WP_011949816.1|780657_781998_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl|CDD|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	5.5806e-104
NC_009497.1|WP_011949815.1|779702_780626_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.70029e-11
NC_009497.1|WP_154644753.1|770884_771859_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.11487e-20
NC_009497.1|WP_011949806.1|768156_770022_-|hypothetical-protein	gnl|CDD|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	0.00871754

Protein sequences

>NC_009497.1|WP_011949800.1|763219_764419_-|BspA-family-leucine-rich-repeat-surface-protein
MKVKLRNFISISSLSSLLLMPLVAASCKKNDNGNNNKVISEGSNSKRMTPPNLSNDENKNGGESSNVEGNLPNTDLSEKSDTMNKEFKLEEKDINNELNNSEIPSDQPIESNNSRATYSDDEVRRNAEAEARKLEEAKKKQQEEERKLKEAEDKKNVVEIQKIVEEQKDAFGSFHSQKDFVDQINVYAKDKKISGLTLQNEEDGNKSLAVDTDGGKKNKIKLQLGSQKFEVNLGIVLKDAVITKFYYEDNHQQGQVMNNLLKANGDSIINKTWTNYKNGKNIVIKQLGYHRDHTGIKLTVVPHYTSKVPKHLPLKISSINLSFYNLESLKIDNINEWDLSNVQNAGQAFLNAKHFSQDLSQWKLKSGANTQKIFEKANKMNEHLDKIAKTWNVEVSKLK
>NC_009497.1|WP_011949799.1|762473_762863_+|hypothetical-protein
MSKKLTNKTLNGLKSSLVSDWKSIYFRFAIVHKLDNGFDFKSLNAAELGKFHNFINEIFKRKMTISDVEKNYMRKHAKPLANRRMEAQDIEVNEIHLGKDNNSFRIFGYLNKDNYFVLTKIDPKHRYHK
>NC_009497.1|WP_011949798.1|762018_762471_+|DUF4065-domain-containing-protein
MRNKYSYKDISGWFLSKESMTPKKLQKLTYYAEAWAYALLDDGILKDTAFQAWIHGPVSPELWKDYRDYGWNEIEKKAFDESKLDKNVLELLDAVWTTYGDKSGYELEAVSHSEEPWKNARKGLGEFEASNRLISPDDMRNYYKSIYSGD
>NC_009497.1|WP_041308780.1|761368_761668_-|variable-surface-lipoprotein
MNRRNKHIMFLGSLITLGSIPFIAAKCNDGSTKEESKNNETRPTNSSSNQNQNKNGDTNGQGQAKNDKDNLVNNNNNNNSSTNSNSETTNHNSNPTPLS
>NC_009497.1|WP_154644752.1|761121_761283_-|hypothetical-protein
MSDSMQSDEPGKSDDVMNDTEENNSEGKNKKPKKSLIFYLCHLINMATTLKSI
>NC_009497.1|WP_011949796.1|760840_761164_-|hypothetical-protein
MSFNKYGNDIKKHLESAETILMINNDLDPSYKIVKYEFNNIKSLLSSTGFESNFIDSLISDLFEFYDTLSLLATPSYANNSDKQKASELFKKVKSKIDEAYKKAFNK
>NC_009497.1|WP_011949795.1|758511_760779_-|hypothetical-protein
MKRIKKCYVNLALACSFSSVFASASCIAKGTDSSSNVINNSVNIVNSLTPSSNEFNAEHNTENAAENRNRSKAPSNDQKAYETATPVSSQIIYNSINRTILGPEVIDISNIQSISSVESRVPELDSFYIEHTKKDFVEKELSESQIESMILNYGVSPNFYSHPKYTIDAQNIRLDSNGAQTIKLNLIDSKTKEKVTDDVQWYQRNWYATKEVAKAGEDVSDGKLTLTSDGNIKGKSHTKNDFGKVQVWAHYKGYLYSTMVDVDSVDLTKSISENAQARARAKDIAKEWQGLPTLEKITEAYKWMTKNVKYDYSQTNLVDDQSAYSALVKLSTVCTGYAKGFKMIMDELGVPCKFISGTADYGTLTGHITNHAWNLVEVDGVWYHVDATSDRAEKENEGKFNFFMMNDDDFIKASIFNRGIVKTGERFRNLKISNYVNSKDDILVSIDRQLGGMDKLPSSIKFNVAPSSYKNVLEAFKTAELELNETRPTAKITHPYVTYDEITYYFNQPSKQIELKNVNASVKKHTLSNKELGQYALKVKINNSDNNIDLKPGNFIVKNAYVKEAIKDNDGYTLILDHFSKYGDVEVELEDIKKLGFKFDISNKKVNFNVIKNQKPAATINAVGENRIKVSGVNSNMEYRNNSNEWKSFEHDNQVLDKVFLGNFSIRVKNTNNSLESDIQDFVITKGRDLDKIVKKYNSNMLIGVDSTMEYRLKDATEWTPITTTKLTLNPGEYLVRVAPNNNELASEALKVVIS
>NC_009497.1|WP_011949794.1|757493_758339_+|Cof-type-HAD-IIB-family-hydrolase
MSKINLNNIKYIFFDLDGTLLTKDKLITDEVTNKIRELSKNHQVIINTGRPWYMAQKFYKQLDLKTPFLGLNGALVYDFESKKVLYQNPMSMETSLKLLNLILKYEIAFLIYLDDEMIGVQKFKHPWFEKVVYPKNEFSAKFTEINDPVNQLKLEKPVIKFLLLIDTLTESQLETLKQEIESISDEIYTVRSQKACLDVMPKGSDKGTAIEWFKNNYLNHEDISKNSIMFGDAANDIPAFEKVAYSCVLKSSSLEAENAANYVVCSSTENGIIEFFEKHTN
>NC_009497.1|WP_011949793.1|756086_757148_-|phosphotriesterase
MAKDKFVRTVLGDVPAESIGITDCHDHLIKNGGPEMHEHPDFLMIDVEAAKKEVQEYVDHGGKTIVTMDPPNVGRDVYRMLEIAEAFKGKANIVMSTGFHKAAFYDKYSSWLACVPTDDIVKMMVAEVEEGMDEYNYNGPVVKRSKAKAGIIKAGTGYAAIDRLELKALEVAARTSITTGCPILVHTQLGTMALEVAQHLIGFGANPRKIQLSHLNKNPDRYYYEKIIKETGVTICFDGPDRVKYYPDSLLADHIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKGKETFGLSYLFERFIPLLKQVGVSQEAIDDILINNPREILAFDEPRVYDASKVSSEVVQLKKDLKLL
>NC_009497.1|WP_011949792.1|754224_756033_-|PTS-ascorbate-transporter-subunit-IIC
MQETSNKSKKPFNWKVLVGVLVAILIVLAIYVGALAAKQWDFKAGTLFFIKDIMLNNFLGINAILIGLLVFIGYLILGRGFSGIVIGTMKAIIGVLLLQIGSGALVGLAKPIFAAFQKFSGTSVIPLDTYSGQVSAGKFLDAVGNGFSSWVSYALIIGLFVNIILIALRKWTNVHSLMITGHVMFQQAAVVVPIVFLLMFSKDAGLIDDKEIVSLGAQLGTIIFSGLLLGTYWGVASSATIKGTDAVTQNAGFAVGHQQMFGVAIAYKIGKYFGKAEQSSENRKMPKGLKVFEDNIFTQAMLILLVFLILILIIQFAPGLDESVRFAGKDGLVTKEYNSWKVGGGSAFWVVQLILGSFQLVSAIIAIQTGVRMFVSELQQSFQGISDKLVPGALVAVDVAATYGFSPNSVTFGFISGTVAQFVGVAVVIGLSRIPGSFSIPIVIPLFITLFFNSGSIGVFANASGGYKATLAVPAIFGFLEIIIIALGLGMVNSFGLKSSGLVVSATLDKESIDYLTHGPFFTGFNGMFDWNFIFGLLMIIGGGHPIAAYIVFPLYLVGMLVLAQIIDTARQHKPTSLQKLFKIKPTLLEQPVAEEAATQNA
>NC_009497.1|WP_011949806.1|768156_770022_-|hypothetical-protein
MKKILIKAGAILLPAAAGLSVVACGNTEEEKVVFRLGQGKGWPLSLSLQKVIGYYNETFKNDPDFLTIRFEFADDFKYKDSKGKEVKVPGHNTYSEYQLIKNVAHAIESKDNKKVPNIVLGDQSGAYILNQNKQLLDISDTGITKKSFSKNIANLHSILAGQGQTETIYNIPFDNADTDSLQLNLKVLHKMFEIIESGGGKIEDKDKDGIIKKVYDSKNKGNQLPEQSIWHALKAKNGENSKKVFEGLTVSNKTFESIKDIRDLAAKFTEGVEIEKDKINDNTISGEVLSIDYQQSTFFKELHAKIEDKNKAIFELDKDKNVKYNLIDDADVKKKFQELWKDYNDSIKRVEQTPSGKAEKDKKVFQSMKYMFTQTKEWGSWQIFRFQSAISFAASVGAYQNKITQFTKTHPYFEQSIKDDPKFLTNNASEHDVLMLPQVTGTKDGKHSIFHEGGSSIIAIDSKNEKVNKAIKKFLKWIYTGKNKVSGEEEDNWYTIARTSGYIMPLASVVTSATNDKIKGIIKELEGKLKDKKSEELMTTFEPDYFKLNMLRSAQLSLESLLNVESGKVVAKPAVTDDKSSQMSDTVMKAMIEQTELDRIQGFKAKTADELITAFEQTKKQ
>NC_009497.1|WP_011949807.1|770082_770895_-|carbohydrate-ABC-transporter-permease
MPGRMLLVIFKEIIKYFLIGFLCLLMLFPLYYLLLQSLMSTNSLINNRTFIVIEEWNWVNFATAFKSNFLRAFGWTLLFATILILIRLIIYSLAIAGLFRMSAKYQKVFLYFFLVISLIPEFSIFLSLKTVLLTFNLDETPIAFVTNAIFSFFNFTYIFNLAKSISDKKNKTMLNDNLKPMDKLIYVYLPKMKLGYMLLIVFSFISVWNDYLWPQFLFSTNYTNISIWYLTLGQDRQAALLNVQAAGAFISIVIPLIIYFIFSKKISRFN
>NC_009497.1|WP_154644753.1|770884_771859_-|sugar-ABC-transporter-permease
MHNSESKKQKVWTVSKITLMLLPLLIFILVFTLVPILHTFVKSLKAPISIHDRTRYNYNFNNYNNILSDPNFKNAVLNSTLVLFFGSGISLVLSLIFALVVNSLISKFTQRAFLTILFSQFFISGFAIGIAFTMFFGNKNLFFYILGKSEYTFIASSNKKLPIWMYYSIFQIWRSLPFNLILFASAISRADLKYKKLMLNDKLTILQKFRYVYMPEISKVLFSILFTNFIFSTLLLPQALLEPTFDIDINYAHTLTSYTIKFLGFGTNNPSLRYEKGYASAFFSFSYLVLLLCILQLLRISTIKAIYRKISKLIAKTRSKKYAR
>NC_009497.1|WP_041308783.1|773258_776009_-|C1-family-peptidase
MVNLARNKKGSIFLGKIMFFAPFASVFSLSTSLSAKRQNTTNNESSNEKHKNAYFSLRDDYILFNQYQYNTGLCWDFSATKSLETALMINTNEMYDFSEASITINDTNNVGGGSWFDDYDRLISRYGISYESDFKFGDLYYVPNKGIYHQKLRDLFNKHIHKNFRKAVERVDFNRYDYENIKKHIVKNGSLFVAIKGYKTVSNDKYYNEVTTKSNSKIKVHELVGTGRENTHAVSIIGWDDNYKATDGSTGAWIILNSDNLYSNRDGVNFLPYNSSAVINDFNGYKYVGKNILISESNANYENEFSNYYNSANYGTKSKNTFAKNRNIFKSTQGVKIEYKINQNVAKLNSIFAKVYQDGVDVSAYFNIEYVKNEGVKLHSKSPLKSGTYSVKLIYDYNLINGNEHHSDSQTRQIYVLDGTEAIQANSYWTISNNSHIVFHANNSYVLNNHTPVILASKSNEVNFNNRLLYTNSKNEENTYFKVNDDKLQDSKVNSFLAKYKDDSFEADVSAFFGNSLASKRKYRFYRLDEKAKYTFTKLYFDLDGAKTDSLVTEVPFSESGALSKHYLPNLKKDNSEFLKYTYINKNGVESDLPFDTYKNKYYVTYNHIKDLKTNVLEFNYIGNRQKGNNQTYANPIIVKAIFDTKKEAKIVGSNLKSSYKALETINLQDVNISVENNGNIEFVKPTKVNYQSSQHINYGDSKIVLEYEFNGKKYVYEHSINVEKLIIDAPKNFENKFVYDGHEHNLGLDKFSFKTDVLVNDLKHIDSSKYQSSIKIKNKNYSFAEGKNELVYEWEILPKVISKNSIIDKSILKFDDEVLYSFDKLNFNEYKSSNQLLSASSPIVYFKYKDDKNHNSKELLEIDLSNYNIKPVENSNKRKSTVIIASSVTASAVGITVALVLSAIFIKKNKNKKVN
>NC_009497.1|WP_011949811.1|776118_777126_-|ZIP-family-metal-transporter
MTKFWNVLYSSLGYNQPLAIFIAILVVFVLIAIIPFLVNLIFAFTKEKLNSKGTVLLYAFMCGFFLTMANFGFLKESLEISSINASAILNSDFKIYGWNILVVVGGLIIGIGFAALVRQLVRKSINSKIATDKSARLFLHSHDIGHDHSDMDHHEHEIAPSHDIQISSNAQSKPAYKLVAILLLLLHRIPEGFLIGFIIIGIESKGITSTSVAFLISLILHLIPEQVLFYYRQREMGWSRAKALFISTLCLFLFLPAMLLGGYLGKHIYSIWQLRAMVQSFIAGIFIFISILEFLPEFYHAHHDKKLFFWTIFVFMVGIIFCAFVLAFHKHGQGI
>NC_009497.1|WP_011949812.1|777128_777866_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSHWAGIKHKKGANDAARGKIFQKMFKEIYVAATGPGGTDPSSNPALRLAISKAKAKSMPKANIERALDKAKGNAKDGAVFTEIIYNATISGGATFLVITLSDNVNRTTSNIQSYFNKQNAKLGKTGTIPFQFDHKGIMEISKSLVDEESLTIVCLENGAEDIEATDESFIITTSVEDFSTCKSAIESNLNITEFMQCEITYLPNATVTFTGEKAQKIQDFIAKLEDDDDVQEVFHNIEFEE
>NC_009497.1|WP_011949813.1|777868_778681_-|NAD(+)-synthase
MNKRIGLRVDNSFNSPFDNEKVKIYAEYLVSWIKRRVKRAKAKGCVVGISGGIDSALVASLCAKAFPNNTLGLVMPIDSMNHDLEDISKLERTINLKFKTVLLNKSFDEVKKSLNNEVDNLLSISNIKPRLRMIALYAYAQQNNYLVMGTDNQDEYFIGYFTKHGDGGVDLLPISKLLKSEVRMMAKYLNVPESIINKKPSAGLWEGQSDEDELGFTYHELDSYLLDDKADIRPNSVAKIERMHKYSMHKRNKAGMPLSIDEVLKRKRKE
>NC_009497.1|WP_011949814.1|778795_779701_-|hypothetical-protein
MNYEQFEQDLKFSLLNNNAKKLIYKLAEAPYRFISFLSPLNFKTKLEQSFYRSQENKYYKFLSNCSVNIFSESPYEIAENSVSVTKFSADNPDEQIIESARFTFAFKDEENKKYYFIKQRKRDVFSANEAIKVWDKFKNDVELAKQSFADYKIIGILWFVDSEFRNNQQYYNSGSLVEDDLDINISAKYGFELFKDFELHEKWIEIELHLDKFKRQNYTDFLDFPNLDKDPEALEALIELSDSAWEKLNSPTPVYMAIRSAIFNEADENSNLFKALKLRDIKANMVDEDGLKLALMKLQSK
>NC_009497.1|WP_011949815.1|779702_780626_-|alpha/beta-hydrolase
MRMNYVNFKDQKMSVYSKNNKYDTTILFLHGLNSNSSFIDNLLEYDNKFNIVSVNFPGSKYAPDIDPEDIILDDWIELAKAVLKGIKSKHIHILAHSMAGGVAVELAKDPRVEKVFMLATINPTMTENKSYKLLHNVIGPQTGKPSMFGKLFVWGAKFFKKGKRLIDSFSRKGKWYNLLDKYILQPSFMEKLDKQYREVTKKLIFIIGDKDSIIGTDNFINYANELNCPAVKIGETHSPIKVAGKQMSNFLNMLVISKKVHWPFNKFITFSKNIINVGVSNDADDEDAVEEILDQLNKNGEIELEKQ
>NC_009497.1|WP_011949816.1|780657_781998_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MKLQNNTVVKNVIAVDHSYEGLGTVKTDDYPIFVENLLPGERADILIKKANSKFAFAKVIKRYNESTKRIKVVNEKLMESGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKSDYEWRYRNKLLLFTKNVQNTIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKNINKYDCFKNVKNALTSITLRESYVNKKIMLYFTASKAFDLSKQFVNDIAKEFENIETIMVIVNDKVVYSYLSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKVVLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFISGDVIKTIDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVLKLKDAKRTIRKDH

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	71188 : 82536	7	Bodo_saltans_virus(28.57%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_009497|71188:82536|DBSCAN-SWA
TATGAAAATTTATATTGTTAAAAGCACTTCACCATATGAAACATTAGCATATGAAAACATAATAATGGAGGATCCAACTATTACAGGTGATGTTTTAGTGCTTTATCAACATGCAAATGCAATAATTATTGGTAATAACCAAAATGCTTATGAAGAAATTAATCGTGAATATGTTAGAGATCATAAAATTGCACTAGCAAGAAGAAAATCAGGTGGTGGTGCTGTTTACCATGATTTAGGTAACTTAAACTTTAGTTTTATTTCTGATAAGTCAGACAATAACAGTTATCAAAAGTTTCTTAGACCAATTCTTAATTTCTTAAACTCAATTGGTTTACAGTCAGAGTTTCACGGCAGAAATGACATTCATGCAAATGGATGCAAAATTAGCGGTAATGGTCAATACATAAGCGGCCACAGAATTGTTTCACACGGAACATTACTTTTTGACGTTGACATGACAATATTATCTAAAGCACTTAATCCAAACAAGATAAAATTTGAATCAAAAGGCATCAAATCAATCCGTTCTAGAGTTGCAAATATTAATGATTTATTGCCTAAAAAGATGACAGTTGATGAATTTAGAGACGCTTTAGTAAAATATTTTGTTGAAAACGAAGATAGCACACTTGAAGAAATTCCATATGAAAAGTATGCTCCAAAATTTGAAGAGCTAAGAAAATTATTTAGCTCTGAAAAATGAATATATGACCGTTCTGCAAACTTTACTTATACAAAAACTGAAAAATTCCCTGGCGGTCTTGTTACAGTTTATGGAACAATTGAAAACTCAATTATTAAAGACATTATTTTTGCGGGTGACTTTTTAAGTAAAAAAGATATCCGTGAAGTTGAACCATTATTCAAGGGCATTCGTTATGATGAAAAATCAGTTAGAGAAGTTCTTGCAAAAATTGATTTAGAAAACTACTTTGGAACTTTGACAGTTGATGAAATAGTTAAAATCATTTTAGGTTAGTAGTGAAAGCAACAGTTCCAATTAAAAATGAGCAAATTCATTACATTTATGAAGACGCTCCTGAAGGTACACCAGTACTTTTATTTATTCATGGGTTCAAAGACAGATCTAAAACAATTCAGCCGCTTTTAAGTATAAAAGACAGAAATTACTCTATTTATGCTCTAGACTTGCCAGGATGCGGAGAATCATCAAGTAATTTGGGCAGTTATTCAATTGAATTTTATGCAGAAGTTGTAAGAGAATTTATAAACAAAGTATTACCAGGTAAAAAAGTAATACTTATGGGCCACTCAATGGGCGCAGCAGTATCACTAATGTGTTTTGATATTGCTAATGTAAAAGAGTTAGTTTTAGTTGCGCCGTTTAATTACTATGCAGGACTTAATGCTGACTATGAGCAAGGAAAAAGATGAATGCTTCCTGAAAGCATTGAAGATGCAGTTGAAGCATATAAAGCTTTAGTTTATAATCCAAATATATTTTATATAAAAGGCATACAAGCTTTTGCAATGCAAGATATTCAGAATAAAGAAAAAACAAAAGCTATGTTTTCTTACATTGTTGATAATCAGTTTTTTAATAAATCATACTTAGAAAATGTATTAAAACCGCTGTATCAAAATGCTAAAAAACCATACACATTAATCTATGCTAAAAATGACTTATTTACTACTGAAGAAGAAATGCTTAGGTTAATTGATGATATCCCAACCATAACTCCTTTTGCCTTAGAAGAATGCGGCCATGCTGTGTTTTTTCAAAAAGCTAATAAAGTAAATGAAATAGTAAGCAACATTGCGCAAACCTTAAAAGCCAAATAATGCTGTAAAACAGCCAAAAAAAGCAGAAAATATGTTCAATTTTCTTGCTTTATTTTTTTATTAATATTCTGAATATTAATGCAATTTATGATGCTTTTTTTGTTAATGGAAGCAACTATGTTTCTGCCTGATTTGTAATAATTTTTGGCCTCTTAGGAATGTCAATGACCCTTATTTTAGGTCTTCCACAAGCCATACATTTATATAGGTTTAAGCAAACAGGCAATGTTAAATATTATTCATACTGAATGTTTTTAATAGGTATATTATCATGAATCTTTTTAGGAGCTTTTGATCCTGTACAAAAGATGTTTGCTATAGTTATTTCAAATTGCATTTGCTCATTAATTTATGTAATCACATTATGATTAACATACAGATATTCAAGTGATTTAAAACGCAAAAAAATCAGTGAATTGTATTAACTACATCCTTGGCATTATCAATTTTTGTTATTTGTTTAGCTATCTCAGCACTTATTTTAAAATGAAAATTGCCACAAATTGCGCAAATGAGCATAGCACAAATAGTACCAATAATTACAACTTTTGCTTTCTTGCCCCAAGTGCTTAAGGCTATAGATACTAGAGACTATTCTGGAATGTCTGTTTCAATGGTATGAACATTCATTTTAGCCAATATATTTTGAACCTCATATTGAGTATTTTTTATTATTAATGCTGGCATAGCGCCGCAATTAATTAGTGCCCTAATATGACAAATTTTATCTCTTTTACTATATTCATTTTTACTAATAAAAATGAATCTGCAAGTCAAAATTGACAAAAAGAAAACTAATACTACCAATGGAGAAATTTATGTATAAATCAAAGTTAACACTCAAAGAAACACAACAAGCCATCCAGGATCTTAAATTTGCATTTACCAAAAAGCTTAACCAAGAGTTAAACTTAACAAGAGTGTCTGCCCCCTTATTTGTTACATCAAACTCAAAAATTAACGACGGATTAAACGGGGATATTCCTGTTATTTTTTCACCAAATAAATGAAGCGAGAACATTGAAATTGTTCATTCATTAGCTAAGTGAAAAAGATCGGCTTTATCAAGATATAAATTTTTACCAGGCGAAGGGCTATGAACAGATATGAATGCAATTCGCAAGGATGATGAAGTTGATTATAAGCATTCATTATATGTGGATCAGTGAGATTGAGAATTAATCATAAACAAAGAGGATAGGAATATTAATTTCCTTAAGAAAATTGTCGAAACTATCTATAAATCAATTAGATACGTCGAAAACAAAGTCAACTTTAAATACCCTGCTTTATCTCAAAAACTTCCAGTGAACTTAACATTTATTAGCTCTGAACAGCTATATAGAGAGTATCCAAGTGTCAGTCCTGAAGAAAGAGAAAATATAGTAGCAAGAAAATATGGAGCAGTCTTTATTTATAAAATTGGTCACACTTTGCCTGATGGATTGCCACATTCAAAAAGAGCGTTTGATTATGATGACTGAAATTTAAATGGTGATTTAGTTTTCTATGATGCTGTTAATGATGCAGCATTAGAAATTTCATCAATGGGTATTAGAGTTGATGCTGATTCATTAACAAAACAAGCAAAAATTTGCAATAAAACTGATAACGATATGGGTGAATATCATAGAGCTATACTTACTCAAAAATTACCTTACACAATCGGTGGTGGAATTGGACAAAGCAGACTAAGTATGTTTTTATTAGAAAAGAAACATATTGGTGAAGTTCAAGCAAGCGTTTGACCAGATGAACACAAAGAATCATTTGAAAAACAAGGCGTTAACTTACTTTAATCAAATTTTCCAAAAAGCCTATAAAACAGGCTTTTTTGTTTTATTAAGCAACTTTTTAAACAATTTATAACATAAAAATAAAGAAATTAATTTTATATATAGATTTAGTCTTAATATAATATATATATGAGTTCTGTTGGTTATAAAAGATTTGAAGCATTTTGCAAGGCTAACAACATAGAAATTAATAGCGAATTACAAGGAACCGAACTGGTTCTTTTTAATCAAAAATATGATGATAATTCAAATGAGAAGCTCAAAATAGAGTTTCGTTTTAAAAATCCTATTTCATATGAAACTATTAAAAAAATAAAGTCATTTATACGTTTAAACAAGGATAGATTAGACGTATCTTTTGTTGTTTCAAACGATTCATACAATAAAAATAGTATCTTACAATATGTTTATCAAATAATAGACAAAACACGTTTTAAGACTTTGAATCAGATTAATTGGGAAAACAAGTTTTATGTAGATGACAACCATACTGGCCACTTTGAAAACATTGACAGAGACTTTGAAAATCAATATGGGATTTTGTTAAGCAAGTTGCTTAATAAACTCAAAGAATATGGATTTGTTTTGCTCAATTTTTCTTATGACTATATTCAATCTTCTCCAGAAAGCTACTCAAAATCGGAGGAAGCAGCAAAACAAAATGAAAAAATAAAGCAAGAGCTCTTGAAAAAAATGATTGAACTAGATTCATCTTCTGATAAATATGATTCTTATAACTCAAACCCACTTAAAGTAAAAAGAAACTTTAATAAAAGCTATACAACTTATTCAATAAAAGATTTAGCTACTGCCCCAAACAGAATAAATGTTGAGTTTGTGGGGTTATTATTTGCATCTAAAAAAAGTTTTTCTAAAAATAAAAAACTTACCATTCAGTTTAAAGTTAGTGATTTTCAAAGTGCAGTTAACTGCACATGATTTTTAGACACTGACTGACTTAGCAATGAGCAAAAAAACTTAATTAATCCAGATAATCAATCGTGAGTAAAAGTTAAGGGATCAATTCCAAGTGCTGAAAAAATTAAGGGCAACAACTTCTTTATTTATGTTGATTCCCTTGAATTAACTGATTCTCCTTTAAACATTAAAGAGGATATAGTAAGCGAAGATAGGAAGAGAGTTGAGTTTCATATTTCGACAAAAATGAACACAATGGATGGTCTTTTTAATGCTGATGATTTTGTAGAAAGAGCAAAAAGATGAAAAATGCCTGCAGTTGGCATAATGGACACTGATGGTGCTCAAGGATATCCAAAGTTATTTAATAAAGCTAAAAAAGCCGGAATAAAAGCTATTTATGGAACTGCTTTTACTACTATAAATAAGGCAAATGAGGCAATTTTGGGAAATGTTCCAAATGGCAACTTTAAAGACTATTCATATGTGTCATTTGACATTGAAACAACAGGTTTAAGTCCCAAATTTCATGAAATAATTGAATTTGGTGCTGTAGATATTAATCAGGATTTAAAAGTTGGAGAAGTAACTCAATTTTTCATTAAACCGCAAGCAAAAATAGGTGCTTTTACAACTGAGCTTACTGGTATCACTCAACAAATGCTTGATTCTGAAGGATTAAGTATAAAAGATGGCTTACAAAGAATTTATGATTGCTTAGATGGCAAAGTTGCAATTGCACACAATGCAAAGTTTGACTTTAATTTTTTAAAAGAGCAATTTAGACTTAATAATGTACCGTTCCCAAATGTTACAGTTATTGATACTTTAATAGCTTCTAGAATAGGCTTTCCAAATTACAAAAGGCATAAATTAGAAGATGTTACATCCAGACTTGGTGTTGTTTATGATCCAAACGTTGCACACCGTGGGGATTATGATGCTAAAGTTCTTGCAAATGTTTGAGTTAACATAATTTCTGAGCTAAATTCTAAAAATATATTTACTTTTGAAGACTTAGGCAACTTTACTTCTAATGATTTATATGCAAAAATGCACGGCTATGAAGTTTCAACTATTGCTTTAAATAACAAAGGATTAAAAAAGCAATTTGAGCTTATAACAGATTGCTTAACTAAAAAATTTATAAATGGCCCAATAACTTTTAAAGAGGATTTTGTCAACTTAGATAGATCTGACGTTTTAGTAGGATCAGGAACTTTAAAAGGCCTTTTGATTGATAAGTACTTTTACTCTTCGCATGATGATTTTATAAAAGAATTAAAACATTATGACTTTATTGAAATCCCAGCACCGCAATGCTTCGAGCACTGAATAAAATATGGCTTCATAACTACTAAGCAGCTACATGATGGCTTAAGTGAAATTATTTCTGAAGCTAAAAAACATTCAAAAATTTGTATAGCTACTGCTGATGTAAAATACCTAGATCCATGGGATAAAGAAATTTTTATGTCCTTAGTTTATGCTAAAGGTATAAAGAATGCAAGACATTACTTATTTGACTATAAAAAAGCCGAAGAAGGAAAATTAGTTATACCAAATCAAAGGTTTTTAACTACCGATGAAATGTTAGAACAATTTGCTTTTTTAAATGATAAAAAGCTAGCTGAAGAAATTGTTATTGACAATACTCAAAAAATTGCCAATATGGCCGAAAATATTGAAGTAATAAAAACTGGCTTATTTACACCAGAATTCGACGATTCTAAGAAAAAATTACATGATTTAGTTTATAAAAATGCTCATGCAAAATATGGCGAAAACTTGCCTGAATTGATTCAAAAAAGAATTGACTCTGAACTTAATCCCATTATCAAATATGGTTTTGATGTGATTTATTGAATTAGTTATAAATTAGTTAAGCTGTCAATTGACCAAGGTTTTATAGTAGGAAGCCGGGGATCAATTGGTTCATCTTTTGTGGCTTCATTAATTGGTATTTCTGAAGTTAATCCACTTGTGCCTCATTATTGCTGTCCTAAGTGTAAGCATTTTGAAATAGCTAATGTTTCAGGTATCACTAGTGGATATGATTTGCCTGATAAGACTTGCCCACAGTGTCATACGAAAATTAAGGGCGATGGACAAAGCATTCCGTTTGAAACATTTTTAGGCTTCAATGCTGATAAAGTTCCTGATATTGACCTTAACTTTACCGGAGAATTTCAAGGCGTGGTTCACGAAGAAATCCTTAAGCTTTTTGGAGAAAGCCATACTTTTAGGGCTGGTACCATATCAAAAGTTGCTGAAAAAACAGCTTTTGGCTATGTAAAGTCATATGCTGAGCAAACTAGACAGAACATACCACAAATTTTTGTTGAGTTTTTAGCTAACAGAATTAAGGATGTTAAAAGAACAACAGGTCAGCATCCTGGAGGAATAATTATTATTCCAAAGCAGTTTGATATTTTTGACTTTACCCCAATCAACTATCCAGCTAATGACCAAAGTTCTTCATGATTAACAACTCACTTCGATTACAAAGCAATTCATGATAATGTTCTAAAATTTGACATCTTAGGACATGATAACCCAACTTCAATTAAATTATTAGAGCAATACACTGGTATAAATATTTATGACGTTCCCAAAAATGATGAAAGTGTTATAAAGCTTTTTAGCTCTACTGAACCAATGGGAATTAAACCTGATCAAATTTCAAATGAAAAAACTGGAGCTATTGGTTTGCCAGAATTTGGTACTTCTTTTGTTAGACAAATGCTTAATGATATTAAGCCAAAAACTGTAGCTGACTTAATTTCAATTTCGGGTCTTAGTCACGGAACTAATGTTTGAATAAACAATGCAGATGAGTTAGTTTTAGAAAAAGGCCGCAAGCTTAATGAAGTTGTTTGTTGTAGGGACGACATTATGCCTATGCTAATTGCTAAAGGCATTGAACCTCTTATGTCATTTACTTTGATGGAAAAAGTTAGAAAAGGAAAAGGACTTTCGAACGAAGAAGTTGGGCTTTTAGAAAAACATAATGTTCCAGACTGGCTAATTAAAAGTATGCAAAAAATTGAGTACCTTTTCCCAAAAGCGCATGCTACCGCCTATGTTACAATGGCACTATGAATAGCCTGATTTAAGCTTTATGAACCTTTGGCATTTTATGCTAGTTATTTTACAGCTCACTCAAAAGCTGATGACATAGAAAATATGATTGATAAGCCAAATGGTATTAAAGTGTCAAAAAGGCTTTATGAATTAAAGAAAACTGAAGACAGAAGTAATAAAGAAAATGATCTTATTGGTGTGTTCGAAGTTGCTGAAGAATTATATGCTCGTGGTTTTTATATATCTAATGTTGATATTGATAAATCACAAGCCGAAAAGTGATTAATTGATAAGGAAAGAGGCTGCTTAATTCCGCCATTTTCAACAATTGAGAGCTTAGGGTCAGTTAAGGCAAACGATATTGTTAATGCCAGAGCAGAAAAAGCATTTTTATCTAAAGAAGATTTCAAAATTAGGACTGGAGTTTCTAAAACTGTTTTTGATACCATGAACAGAATGAAAATTTTAGATAGCCTAAATGATTCTGATCAATTAACTCTGTTTTAACCAATAAGCCTATAAAATAGGGACATAAGTCATCCCTATTTTTTTATATTTATATTGTTGCAAAAACAAAAAAATTTACTATAATACTGTAACAGTGGTCGCGTAGCTCAGCAGGATAGAGCACAAGCCTTCTAAGCTTGTTGTCAGAGGTTCGAATCCTCTCGTGATCGCCATTTTTTTATTTTTGCAAGAAAAAATAAAAGTGACGCTTATTTTTATAATAAAATTTTATAACTGTGTGTTCACATAGCTCACCAGGTAGAGCACAAGCCTCCTAAGCTTGGGGTAATGGGTTCAATTCCCATTGTGAACGCCATTTTTTTATTCACTTTTATTAAGCAATGAGCATAATTTTGGGATTTTTTAAAAAAAGTTAAAAACTCATTAAAAAGCTTTAAAATTTATTAATATGAAAAATTTAGCAAATGAATTAAGACCTAAAACGTTGGACGATATTATTGGGCAAAAATCTGTTGTGGAGTTACTAAAAAAAGTTGCCAGAGATAAAATTTACTCAAGTTTTATATTTTTTGGTGAATCAGGCACTGGCAAGACATCAGCAGCAGTTGCACTAGCTAATGACTTAGGTCTAAAATATGATTATTTTAATGCTTCAGTCAACTCAAAAGCTGAATTAATCAAGATGCTTGCGGATAATGACGTTTTAATAATTGATGAAATTCATAGGCTAAATAAAGATAAGCAAGATATTTTACTTTCATACTTAGAGTTTGACAAAATAATTATTTATGCAACAACTACGGAAAATCCTTATTTTAGAGTAAATCCAGCCCTAAGAAGTAGAATGCAAATTTTGCAATTTACTAAATTAAGCGAACAAGAAATGTTTGAAGGCATAAAACATAATTTAAAAAAGTATTTTCCTGATTACCAAATGGATGAATCAACAATTAAGGTGTTTGTAAAGTTATCTAATGGCGACTATAGATCATGTCTTAACAATTTGCAAATTTTGACTTTGATGAGTAAAAACAAGCAAATAAGTTTAGATGACATTAAAAAATTCGTACCAAATATCTCGTTTTATAGTGATGAAAATTCATCAGCTCACTATAACAATCTTTCAGCTTTTCATAAATCTCTTCGTGGTTCTGATGTAGATGCAGCATTATATTACGGAGCAATTATTGTTAAGTCAGGTGATTTGCAAGGATTGTTTAGAAGGCTAATAGCATGTAGCTATGAAGATGTAGGGTTAGCTGATCCTAATTTGCAAATTAGAGTAAAAAACGCTATTGATTGTGCTGAGTTACTTGGTTTACCTGAAGCAAGATTACCCATTTTTTATGCGATTATATCTGTAGCCTTAGCGTCCAAGAGCAATTCAGTTTATGAAGCTATTTCAAATGTTGAAGGTTATATTAATCAAGGAAATATTTACGATGTACCTAAATTTTTGCGTGATGGTCACTATGCATCAGCAGTTAAACTAGGAGATTCTATAGGTTATAAATATCCACATGATTTTCCTAATCACATTGTAAAACAGGAGTATTTGCCGAAAGAAGCTAAAGGAAATCAATTCTTTTTTCCAAAAGAAACCGATTCTAAGAAAATAACAGAATACTATAAGTTTATAAAACAACTACAAGGAGAAAAATAATGAGTTCTAAGATAAATTGAGAAGAAATAAAAAGTTTTGAAGAGTATAAGCAAGCTAAAAATCTAGTTTTTGGTGCAGGCAGCGAGATTGAAGAATTAAAGGCAAAAATCAAAAATTCTAGCCCTGAAGAGCGTAAATTAATTGGTATTAAAATCAGTGAGCTAAAGATATTTTATGAAGCTAAGTTTAAAGAGGTTGAGAAGAGGCTTGAAAAGGAGAAAATAAATAAAATCATTGAAAGTGAATTTATTGATGTAACTAAGCCATTAAAACAATTAGGCTCATTGCACCCAATTAGTATTATTGAACAAAGGCTTAGGGATTGATTTGTCCAAAATGGCTATTTTGAAGCCACAGGCGACGAGATTACTGATGAAGAATATAACTTTGAAAGACTGAATATTCCGCAAAATCATCCTGCGCGTGCAACCCATGATTCGCTTTATATTTCAAACAATATTTTATTAAGAACTCATAACACTGGAATAACTGCTTATGAGTTAGAGAAAAATGCTAACAAGTGTGCAAGTATCTTTTCAATAGGAAAGGTTTATAGAAATGATGAAGATGATGCAACTCACTCACACCAATTTACTCAGCTGGATTTTGTAAGTGTAGGCCAACAAGTTAGTTTCCCAAATTTAATATGAACCCTTAAATCGCTATTATCTTATGTTTTTGAAGAAGAGTTAGAAATAAGACTAAGGCCAAGTTATTTCCCTTTTACTGAACCAAGTGTTGAAGTTGATATCTTTTATAAAAATAAATGAATTGAAGTGCTCGGAGCAGGAATGTTACATTCTAATGTGATGACAAAAGCTGGTTATGACAGCAAAAAATTTCATGGATTTGCAGCTGGCTTAGGATTAGAAAGACTAACAATGATAAAGTACGGAATAACTGACATTAGATATTTATATAAAAATGATTTAAGAACACTTTTACAGTTTAAGAATGAAAAATAAGTTTGCTGAATTTATTAACAATGAATCTCGAAAACCCTATTTTATAGAGTTAATGGCTTCTATAGACAAGGAAAAAAGTAAGTTCAATGTGTTTCCTAGCGACGAGAAAATATTTGAGTGTCTTAAATATAGCAGTCCTGAGAAATTAAAACTAATTATTATTGGGCAAGATCCATATTACAAAAAAGGATTTGCTGATGGCTTAGCTTTTAGTACTGAAAGTTCAAAATGCCCAAAAAGTTTAGGAAACGTTTTATTTGAACTAAAAAAAGACTACCCGGAGGCTGTAATTGAGACATTTAGTCTAAAATCCTGAGCCAAAAATCACATTTTGCTACTTAATAGTGTGCTAACAGTTAGTGAAGACAGGCCAAATAGCCACAGTAATTTTGGATGAGAAATTTTTGTTTCTAATTTATTAGATTTTATTTTAAAGCAAAATAAAAAAGTGATTTTTGGTGCTTGGGGCAACAAGGCCTTTTCATTAATTAAGGATAAAGTTGCAGAGGACAGAATAATATTTACTTCCCATCCTTCACCACTAAGTTATTCAAAAACAAAAAATAGTTTCAAGGATTCACATTTTTTCAAAAAAGTTAATGCAAAATTGACCAATCCAATTGATTTTAGCATTAGAAAGGAAAATTAA

Protein sequences of DBSCAN-SWA_1

>NC_009497|71188:82536|80921_81887_+|WP_011949248.1|tRNA|DBSCAN-SWA
MSSKINWEEIKSFEEYKQAKNLVFGAGSEIEELKAKIKNSSPEERKLIGIKISELKIFYEAKFKEVEKRLEKEKINKIIESEFIDVTKPLKQLGSLHPISIIEQRLRDWFVQNGYFEATGDEITDEEYNFERLNIPQNHPARATHDSLYISNNILLRTHNTGITAYELEKNANKCASIFSIGKVYRNDEDDATHSHQFTQLDFVSVGQQVSFPNLIWTLKSLLSYVFEEELEIRLRPSYFPFTEPSVEVDIFYKNKWIEVLGAGMLHSNVMTKAGYDSKKFHGFAAGLGLERLTMIKYGITDIRYLYKNDLRTLLQFKNEK
>NC_009497|71188:82536|74918_79298_+|WP_011949246.1|DBSCAN-SWA
MSSVGYKRFEAFCKANNIEINSELQGTELVLFNQKYDDNSNEKLKIEFRFKNPISYETIKKIKSFIRLNKDRLDVSFVVSNDSYNKNSILQYVYQIIDKTRFKTLNQINWENKFYVDDNHTGHFENIDRDFENQYGILLSKLLNKLKEYGFVLLNFSYDYIQSSPESYSKSEEAAKQNEKIKQELLKKMIELDSSSDKYDSYNSNPLKVKRNFNKSYTTYSIKDLATAPNRINVEFVGLLFASKKSFSKNKKLTIQFKVSDFQSAVNCTWFLDTDWLSNEQKNLINPDNQSWVKVKGSIPSAEKIKGNNFFIYVDSLELTDSPLNIKEDIVSEDRKRVEFHISTKMNTMDGLFNADDFVERAKRWKMPAVGIMDTDGAQGYPKLFNKAKKAGIKAIYGTAFTTINKANEAILGNVPNGNFKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQMLDSEGLSIKDGLQRIYDCLDGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELITDCLTKKFINGPITFKEDFVNLDRSDVLVGSGTLKGLLIDKYFYSSHDDFIKELKHYDFIEIPAPQCFEHWIKYGFITTKQLHDGLSEIISEAKKHSKICIATADVKYLDPWDKEIFMSLVYAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEMLEQFAFLNDKKLAEEIVIDNTQKIANMAENIEVIKTGLFTPEFDDSKKKLHDLVYKNAHAKYGENLPELIQKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVGSRGSIGSSFVASLIGISEVNPLVPHYCCPKCKHFEIANVSGITSGYDLPDKTCPQCHTKIKGDGQSIPFETFLGFNADKVPDIDLNFTGEFQGVVHEEILKLFGESHTFRAGTISKVAEKTAFGYVKSYAEQTRQNIPQIFVEFLANRIKDVKRTTGQHPGGIIIIPKQFDIFDFTPINYPANDQSSSWLTTHFDYKAIHDNVLKFDILGHDNPTSIKLLEQYTGINIYDVPKNDESVIKLFSSTEPMGIKPDQISNEKTGAIGLPEFGTSFVRQMLNDIKPKTVADLISISGLSHGTNVWINNADELVLEKGRKLNEVVCCRDDIMPMLIAKGIEPLMSFTLMEKVRKGKGLSNEEVGLLEKHNVPDWLIKSMQKIEYLFPKAHATAYVTMALWIAWFKLYEPLAFYASYFTAHSKADDIENMIDKPNGIKVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARGFYISNVDIDKSQAEKWLIDKERGCLIPPFSTIESLGSVKANDIVNARAEKAFLSKEDFKIRTGVSKTVFDTMNRMKILDSLNDSDQLTLF
>NC_009497|71188:82536|73811_74792_+|WP_011949245.1|DBSCAN-SWA
MYKSKLTLKETQQAIQDLKFAFTKKLNQELNLTRVSAPLFVTSNSKINDGLNGDIPVIFSPNKWSENIEIVHSLAKWKRSALSRYKFLPGEGLWTDMNAIRKDDEVDYKHSLYVDQWDWELIINKEDRNINFLKKIVETIYKSIRYVENKVNFKYPALSQKLPVNLTFISSEQLYREYPSVSPEERENIVARKYGAVFIYKIGHTLPDGLPHSKRAFDYDDWNLNGDLVFYDAVNDAALEISSMGIRVDADSLTKQAKICNKTDNDMGEYHRAILTQKLPYTIGGGIGQSRLSMFLLEKKHIGEVQASVWPDEHKESFEKQGVNLL
>NC_009497|71188:82536|71188_72169_+|WP_011949242.1|DBSCAN-SWA
MKIYIVKSTSPYETLAYENIIMEDPTITGDVLVLYQHANAIIIGNNQNAYEEINREYVRDHKIALARRKSGGGAVYHDLGNLNFSFISDKSDNNSYQKFLRPILNFLNSIGLQSEFHGRNDIHANGCKISGNGQYISGHRIVSHGTLLFDVDMTILSKALNPNKIKFESKGIKSIRSRVANINDLLPKKMTVDEFRDALVKYFVENEDSTLEEIPYEKYAPKFEELRKLFSSEKWIYDRSANFTYTKTEKFPGGLVTVYGTIENSIIKDIIFAGDFLSKKDIREVEPLFKGIRYDEKSVREVLAKIDLENYFGTLTVDEIVKIILG
>NC_009497|71188:82536|81876_82536_+|WP_011949249.1|DBSCAN-SWA
MKNKFAEFINNESRKPYFIELMASIDKEKSKFNVFPSDEKIFECLKYSSPEKLKLIIIGQDPYYKKGFADGLAFSTESSKCPKSLGNVLFELKKDYPEAVIETFSLKSWAKNHILLLNSVLTVSEDRPNSHSNFGWEIFVSNLLDFILKQNKKVIFGAWGNKAFSLIKDKVAEDRIIFTSHPSPLSYSKTKNSFKDSHFFKKVNAKLTNPIDFSIRKEN
>NC_009497|71188:82536|79707_80922_+|WP_011949247.1|DBSCAN-SWA
MKNLANELRPKTLDDIIGQKSVVELLKKVARDKIYSSFIFFGESGTGKTSAAVALANDLGLKYDYFNASVNSKAELIKMLADNDVLIIDEIHRLNKDKQDILLSYLEFDKIIIYATTTENPYFRVNPALRSRMQILQFTKLSEQEMFEGIKHNLKKYFPDYQMDESTIKVFVKLSNGDYRSCLNNLQILTLMSKNKQISLDDIKKFVPNISFYSDENSSAHYNNLSAFHKSLRGSDVDAALYYGAIIVKSGDLQGLFRRLIACSYEDVGLADPNLQIRVKNAIDCAELLGLPEARLPIFYAIISVALASKSNSVYEAISNVEGYINQGNIYDVPKFLRDGHYASAVKLGDSIGYKYPHDFPNHIVKQEYLPKEAKGNQFFFPKETDSKKITEYYKFIKQLQGEK
>NC_009497|71188:82536|72171_72993_+|WP_011949243.1|DBSCAN-SWA
MKATVPIKNEQIHYIYEDAPEGTPVLLFIHGFKDRSKTIQPLLSIKDRNYSIYALDLPGCGESSSNLGSYSIEFYAEVVREFINKVLPGKKVILMGHSMGAAVSLMCFDIANVKELVLVAPFNYYAGLNADYEQGKRWMLPESIEDAVEAYKALVYNPNIFYIKGIQAFAMQDIQNKEKTKAMFSYIVDNQFFNKSYLENVLKPLYQNAKKPYTLIYAKNDLFTTEEEMLRLIDDIPTITPFALEECGHAVFFQKANKVNEIVSNIAQTLKAK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011949242.1|71188_72169_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	4.3e-14	30.7
WP_011949243.1|72171_72993_+	alpha/beta hydrolase	G9E3U1	Emiliania_huxleyi_virus	1.3e-08	37.0
WP_011949245.1|73811_74792_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	1.7e-50	39.9
WP_011949246.1|74918_79298_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	2.5e-13	32.2
WP_011949247.1|79707_80922_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	6.9e-62	34.9
WP_011949248.1|80921_81887_+|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.2e-29	40.9
WP_011949249.1|81876_82536_+	uracil-DNA glycosylase	A0A060Q589	Fruit_bat_alphaherpesvirus	5.1e-27	35.2