CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_010124	Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5I, complete sequence	0 crisprs	NA	0	0
NC_010125	Gluconacetobacter diazotrophicus PA1 5, complete genome	4 crisprs	cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas9,cas2,cas6e,cse2gr11,cas8e,csa3	29	9
NC_010123	Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5II, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010125_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010125_1

62935-64899

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CRISPRCasFinder
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CRT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	PILER-CR

29 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_010125_1

>merge|NC_010125|1|62935-64899|CRISPRCasFinder,CRT,PILER-CR
GTTTTAATCCCCGCTTCCGCGTGGGGAGCGACGACAACCTTGCGACTCCTGTCCGACGCGGTCGGCGTTTCAATCCACGCTCCCGCACGGGGAGCGACGGGTGCGATCCTCCGCATGGTGCAGGAGGACATCGTTTCAATCCACGCTCCCGCACAGGGAGCGACCGCCTCGTCGATGATGACGGGCGAATTCATCACGCCGTTTCAATCCACGCTCCCGCACAGGGAGCGACGATCACGCGCACGCACCGCAGCCACTCGTCGTAGGGTTTCAATCCACGCTCCCGCACAGGGAGCGACCAACTGTCCGATATCTCGGCCAATCTCTCCAACGGTTTCAATCCACGCTCCCGCACAGGGAGCGACCGTTTCTCGATACGCGGTCCAATCCCCTCCTTCTTGTTTCAATCCACGCTCCCGCACAGGGAGCGACCAACGTCTCCGACCCTTGACGTGGTCTCACGCCTGTTTCAATCCACGCTCCCGCACAGGGAGCGACGAGCCGGGGACGAGCGTGTAATCCTGCTGCGCCGGTTTCAATCCACGCTCCCGCACAGGGAGCGACCATAATCCTGAAACGGATGGCCGAGCTTGAGAGTGTTTCAATCCACGCTCCCGCACAGGGAGCGACTGGGCGGTCCATGCGGTCGGTCTGCATGGACGCCGTTTCAATCCACGCTCCCGCACAGGGAGCGACCCCGAAATATTACTTGAGCGCGCGGGCCTGTCGGGGTTTCAATCCACGCTCCCGCACAGGGAGCGACTCCCTTGCGAAGGAAGCGATGTCAAGGCTAGGTGGTTTCAATCCACGCTCCCGCACAGGGAGCGACCCCGCGGCAATGCGCGCGCCCAGTGCGCTGCGTGGTTTCAATCCACGCTCCCGCACAGGGAGCGACCCGGCCCGGTTCACACCGTCCCATGTTTCGGCGACGTTTCAATCCACGCTCCCGCACAGGGAGCGACGCTCTGCGAGGTGCTGAATGCGCGCTGTCGCGAGTGGTTTCAATCCACGCTCCCGCACAGGGAGCGACATCGGCCAGCCAGAGGTGATCCGCATTTCAGTCAGGTTTCAATCCACGCTCCCGCACAGGGAGCGACCTGGGTCCGCTGATCGGGCGCGAGATCGACCTACTGTTTCAATCCACGCTCCCGCACAGGGAGCGACATCAGCGCACATTCCGACACCTTGTGAATGGCATCGTTTCAATCCATGCTCCCGCACAGGGAGCGACGGCGTGTTGAGCCGGTTCCCCCAAGTCGGGTTACGTCGGTTTCAATCCACGCTCCCGCACAGGGAGCGACGTCACGTTCGATAAGCATAACCGCCCCCTTCACTCGTTTCAATCCACGCTCCCGCACAGGGAGCGACGATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAAGTTTCAATCCACGCTCCCGCACAGGGAGCGACGATCGGTGAGCGCCAGCGGCAGAGCGACACGGCGTTTCAATCCACGCTCCCGCACAGGGAGCGACGATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAAGTTTCAATCCACGCTCCCGCACAGGGAGCGACTCATGTCGTGGTCCTGACCATAGTCTTCGTCCAGGTTTCAATCCACGCTCCCGCACAGGGAGCGACAATCCGATCCTTGCGCTGCAATCGTGTATACGTCAGTTTCAATCCACGCTCCCGCACAGGGAGCGACAACAGGAGGGCACCCATCTGTGGCGCAAATCTGTGTTTCAATCCACGCTCCCGCACAGGGAGCGACCTTCTGTTCGGCATCGCCGGCGCGTCTGGTTCCGGTTTCAATCCACGCTCCCGCACAGGGAGCGACAAGATCCATGTCCTTCCAAGCGCATTCCCTAAATGTTTCAATCCACGCTCCCGCACAGGGAGCGACGGGAAACGAACCGTGATGTCGTGGCGGAAAGAAAGGTTTCAATCCACGCTCCCGCACAGGGAGCGAC

>NC_010125|1|1|62935-64899|CRISPRCasFinder
GTTTTAATCCCCGCTTCCGCGTGGGGAGCGAC	GACAACCTTGCGACTCCTGTCCGACGCGGTCGGC
GTTTCAATCCACGCTCCCGCACGGGGAGCGAC	GGGTGCGATCCTCCGCATGGTGCAGGAGGACATC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CGCCTCGTCGATGATGACGGGCGAATTCATCACGCC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATCACGCGCACGCACCGCAGCCACTCGTCGTAGG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CAACTGTCCGATATCTCGGCCAATCTCTCCAACG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CGTTTCTCGATACGCGGTCCAATCCCCTCCTTCTT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CAACGTCTCCGACCCTTGACGTGGTCTCACGCCT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GAGCCGGGGACGAGCGTGTAATCCTGCTGCGCCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CATAATCCTGAAACGGATGGCCGAGCTTGAGAGT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TGGGCGGTCCATGCGGTCGGTCTGCATGGACGCC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCCGAAATATTACTTGAGCGCGCGGGCCTGTCGGG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TCCCTTGCGAAGGAAGCGATGTCAAGGCTAGGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCCGCGGCAATGCGCGCGCCCAGTGCGCTGCGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCGGCCCGGTTCACACCGTCCCATGTTTCGGCGAC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GCTCTGCGAGGTGCTGAATGCGCGCTGTCGCGAGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	ATCGGCCAGCCAGAGGTGATCCGCATTTCAGTCAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CTGGGTCCGCTGATCGGGCGCGAGATCGACCTACT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	ATCAGCGCACATTCCGACACCTTGTGAATGGCATC
GTTTCAATCCATGCTCCCGCACAGGGAGCGAC	GGCGTGTTGAGCCGGTTCCCCCAAGTCGGGTTACGTCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GTCACGTTCGATAAGCATAACCGCCCCCTTCACTC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATCGGTGAGCGCCAGCGGCAGAGCGACACGGC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TCATGTCGTGGTCCTGACCATAGTCTTCGTCCAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AATCCGATCCTTGCGCTGCAATCGTGTATACGTCA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AACAGGAGGGCACCCATCTGTGGCGCAAATCTGT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CTTCTGTTCGGCATCGCCGGCGCGTCTGGTTCCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AAGATCCATGTCCTTCCAAGCGCATTCCCTAAAT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GGGAAACGAACCGTGATGTCGTGGCGGAAAGAAAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC

>NC_010125|1|1|62935-64899|CRT
GTTTTAATCCCCGCTTCCGCGTGGGGAGCGAC	GACAACCTTGCGACTCCTGTCCGACGCGGTCGGC
GTTTCAATCCACGCTCCCGCACGGGGAGCGAC	GGGTGCGATCCTCCGCATGGTGCAGGAGGACATC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CGCCTCGTCGATGATGACGGGCGAATTCATCACGCC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATCACGCGCACGCACCGCAGCCACTCGTCGTAGG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CAACTGTCCGATATCTCGGCCAATCTCTCCAACG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CGTTTCTCGATACGCGGTCCAATCCCCTCCTTCTT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CAACGTCTCCGACCCTTGACGTGGTCTCACGCCT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GAGCCGGGGACGAGCGTGTAATCCTGCTGCGCCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CATAATCCTGAAACGGATGGCCGAGCTTGAGAGT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TGGGCGGTCCATGCGGTCGGTCTGCATGGACGCC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCCGAAATATTACTTGAGCGCGCGGGCCTGTCGGG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TCCCTTGCGAAGGAAGCGATGTCAAGGCTAGGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCCGCGGCAATGCGCGCGCCCAGTGCGCTGCGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCGGCCCGGTTCACACCGTCCCATGTTTCGGCGAC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GCTCTGCGAGGTGCTGAATGCGCGCTGTCGCGAGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	ATCGGCCAGCCAGAGGTGATCCGCATTTCAGTCAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CTGGGTCCGCTGATCGGGCGCGAGATCGACCTACT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	ATCAGCGCACATTCCGACACCTTGTGAATGGCATC
GTTTCAATCCATGCTCCCGCACAGGGAGCGAC	GGCGTGTTGAGCCGGTTCCCCCAAGTCGGGTTACGTCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GTCACGTTCGATAAGCATAACCGCCCCCTTCACTC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATCGGTGAGCGCCAGCGGCAGAGCGACACGGC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TCATGTCGTGGTCCTGACCATAGTCTTCGTCCAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AATCCGATCCTTGCGCTGCAATCGTGTATACGTCA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AACAGGAGGGCACCCATCTGTGGCGCAAATCTGT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CTTCTGTTCGGCATCGCCGGCGCGTCTGGTTCCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AAGATCCATGTCCTTCCAAGCGCATTCCCTAAAT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GGGAAACGAACCGTGATGTCGTGGCGGAAAGAAAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC

>NC_010125|1|1|63001-64899|PILER-CR
GTTTCAATCCACGCTCCCGCACGGGGAGCGAC	GGGTGCGATCCTCCGCATGGTGCAGGAGGACATC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CGCCTCGTCGATGATGACGGGCGAATTCATCACGCC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATCACGCGCACGCACCGCAGCCACTCGTCGTAGG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CAACTGTCCGATATCTCGGCCAATCTCTCCAACG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CGTTTCTCGATACGCGGTCCAATCCCCTCCTTCTT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CAACGTCTCCGACCCTTGACGTGGTCTCACGCCT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GAGCCGGGGACGAGCGTGTAATCCTGCTGCGCCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CATAATCCTGAAACGGATGGCCGAGCTTGAGAGT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TGGGCGGTCCATGCGGTCGGTCTGCATGGACGCC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCCGAAATATTACTTGAGCGCGCGGGCCTGTCGGG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TCCCTTGCGAAGGAAGCGATGTCAAGGCTAGGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCCGCGGCAATGCGCGCGCCCAGTGCGCTGCGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CCGGCCCGGTTCACACCGTCCCATGTTTCGGCGAC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GCTCTGCGAGGTGCTGAATGCGCGCTGTCGCGAGTG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	ATCGGCCAGCCAGAGGTGATCCGCATTTCAGTCAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CTGGGTCCGCTGATCGGGCGCGAGATCGACCTACT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	ATCAGCGCACATTCCGACACCTTGTGAATGGCATC
GTTTCAATCCATGCTCCCGCACAGGGAGCGAC	GGCGTGTTGAGCCGGTTCCCCCAAGTCGGGTTACGTCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GTCACGTTCGATAAGCATAACCGCCCCCTTCACTC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATCGGTGAGCGCCAGCGGCAGAGCGACACGGC
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GATTCCACCGCTTCGGTGTGGTCGTCTTCCTCGAA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	TCATGTCGTGGTCCTGACCATAGTCTTCGTCCAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AATCCGATCCTTGCGCTGCAATCGTGTATACGTCA
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AACAGGAGGGCACCCATCTGTGGCGCAAATCTGT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	CTTCTGTTCGGCATCGCCGGCGCGTCTGGTTCCG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	AAGATCCATGTCCTTCCAAGCGCATTCCCTAAAT
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC	GGGAAACGAACCGTGATGTCGTGGCGGAAAGAAAG
GTTTCAATCCACGCTCCCGCACAGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010125.1\|WP_012222292.1\|47137_49483_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NC_010125.1\|WP_012222294.1\|52281_53469_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NC_010125.1\|WP_012553888.1\|67080_68019_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_010125.1\|WP_041249211.1\|73930_74311_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_010125.1\|WP_012222310.1\|69831_70503_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_010125.1\|WP_012222305.1\|65081_65372_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010125.1\|WP_012222293.1\|49485_52260_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_010125.1\|WP_012553891.1\|60061_60748_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_010125.1\|WP_012222297.1\|55389_56355_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_010125.1\|WP_012222311.1\|70756_70981_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_010125.1\|WP_012222313.1\|71551_73900_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_010125.1\|WP_012222301.1\|60971_62837_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_010125.1\|WP_012222306.1\|65375_66416_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_010125.1\|WP_012222298.1\|56351_57752_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_010125.1\|WP_012222295.1\|53465_54104_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_010125.1\|WP_012222312.1\|70980_71391_+\|tRNA(fMet)-specific-endonuclease-VapC	unknown	unknown	gnl\|CDD\|350312
NC_010125.1\|WP_012222309.1\|68011_69835_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_010125.1\|WP_012222307.1\|66415_67072_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_010125.1\|WP_012222296.1\|54100_55393_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_010125.1\|WP_012222299.1\|57934_60058_+\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126

Protein	Function_ID	Function_description	E-value
NC_010125.1\|WP_012222292.1\|47137_49483_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NC_010125.1\|WP_012222294.1\|52281_53469_-\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	8.74727e-106
NC_010125.1\|WP_012553888.1\|67080_68019_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.75473e-146
NC_010125.1\|WP_041249211.1\|73930_74311_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	5.6509e-45
NC_010125.1\|WP_012222310.1\|69831_70503_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.24922e-110
NC_010125.1\|WP_012222305.1\|65081_65372_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.50958e-31
NC_010125.1\|WP_012222293.1\|49485_52260_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_010125.1\|WP_012553891.1\|60061_60748_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	5.87187e-96
NC_010125.1\|WP_012222297.1\|55389_56355_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	0
NC_010125.1\|WP_012222311.1\|70756_70981_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	3.55301e-15
NC_010125.1\|WP_012222313.1\|71551_73900_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.87121e-56
NC_010125.1\|WP_012222301.1\|60971_62837_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.71524e-147
NC_010125.1\|WP_012222306.1\|65375_66416_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_010125.1\|WP_012222298.1\|56351_57752_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_010125.1\|WP_012222295.1\|53465_54104_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	1.2536e-63
NC_010125.1\|WP_012222312.1\|70980_71391_+\|tRNA(fMet)-specific-endonuclease-VapC	gnl\|CDD\|350312	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.52982e-53
NC_010125.1\|WP_012222309.1\|68011_69835_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_010125.1\|WP_012222307.1\|66415_67072_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.71876e-39
NC_010125.1\|WP_012222296.1\|54100_55393_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	3.55747e-158
NC_010125.1\|WP_012222299.1\|57934_60058_+\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	8.70268e-52

>NC_010125.1|WP_012222301.1|60971_62837_+|ABC-transporter-ATP-binding-protein
MTDTQTAPETAPETASARDGRARNEFADVLGFVIRRWLAYPGALAWTLAGVAVATVADVVTPLLAGWMVDDVAHAGPAAVSGGVLPAVTPAMEAARRGVLWMLGGLVLLGLLGVAGRRMSYLGITHLTARTMRGIAETAFARVQRFSTDWHGNTFAGSTVRRLTRGMWAVDTLADTLMLMLLPGVLVLGATTLVLALHWPSMGLLLGVSSVALVTMSTSLTLRYVAPSARLANRWDTRMGAALADAVTCNAVVKAFGAEVREEARLSWILSRWQRRTERSWVRGTNSGNLQNVAALLMRVLLIGAVLALWWRGQAGPGDVAYVLTMVFLVQGYLRDIGQQISMVQRSVNEMEELVAIYRLPPGVPDRPDAPPLRVTHGAIRFDHVGFGYRGQRGLLFRDLSIDIPAGSRVALVGPSGSGKTTLVKLLQRLYDVTDGRVLIDGTDIATVTQSSLRAQIAIVQQEPVLFHRSLAENIAYGRPGAPMAEIEEAARQANAAGFIERLPKGYATMVGERGVKLSGGERQRVAIARAFLANAPILIFDEATSSLDSESEILVQDAMERLMVGRTVLVIAHRLSTVVGLDRILVFAHGELREDGSHAQLITQDGGLYRRLFELQSLDG
>NC_010125.1|WP_012553891.1|60061_60748_-|endonuclease-III
MTQSPRPASARRRMTLKEVERFITLLAEAHPDAASELDFVDDYTLLVAVALSAQATDASVNRATKGLFRDAPDPAAMVALGEDGVAAHIRSIGLWRTKARNVVALSQALLDQHEGQVPRDRAALEALPGVGRKTANVVMNVAFGDSTMAVDTHIFRIGNRTGLAPGRTTRAVEDQLVARIPAPLLRPAHHWLILHGRYVCKARRPECWRCPAQEPCQYTAKVLVAPAR
>NC_010125.1|WP_012222299.1|57934_60058_+|ComEC/Rec2-family-competence-protein
MADGRREADRATVADALAARLALWLPVGIGLGIALYFSLRQEPGRAAMLAAAGVVAAALGWIARRPYDLVPRVAGGGAAAVAVGFVVACTATHRQPPLPDLPRRATIVTGQVVAVVLLPPRPGDDGPATRRVDLAGAVLDDAIDAGMPPLRRILRVRLRPDDPAVLVPGMTVRVRAMLRPPAPPAWPGGPDRQRRAWFDGTAGTGTALGPVQAAGPPPPPRTLEGLRERVVARILRVLPGAPGGVAAAVLTGSAATMPQADRDAFADAGLAHLLAVAGLHLGIVMGLVMAAARLLLACSERATLYWPCRQVAALAGLAAGIVYVVLTGAHLPALRSLTMAALVVLAILTGRRALSMRGLAVGATLLLLTGPADLLEAPLQMSLAAVMALAAGFEATRPALSRLREQPDWWRRPALHVAHLALASLLAGGATVPVVMTHFGTLQPWFVLANLLAVPLMALWILPWGVIALLLMPWGADPVALVPMGWGIRLVLGLAHAVSGWPAARVMVPAMPSWGLAAWMLGLCWLCLWTRRWRWWGVAPMALALAAPVLVARPDVLLSPDGRAVAVRDGAVLRIGPHPGADKAVESDWQQALALPLASLPQADGRLACRDEACRMDGGRVRLRLSAAAPAECAGVTLLVTLVPMDQGCPAARTLDGLTVWQGGAQAVFLRPDGPHVVSDRGVRGARPWVLAPGQHGMPTLPLAQRE
>NC_010125.1|WP_012222298.1|56351_57752_-|glutamate--tRNA-ligase
MTVRTRFAPSPTGLLHIGNARAALFNFLYARHHGGKFLLRIEDTDRERSTQQAVDVLFDGLAWMGITPDEEPVFQSTRQARHAEIAHHLLAQGLAYRCYCTPEELQQMRDQAAAEGRPPRYNGYWRDRDPSEAPAGAPYTVRIRAPREGETVIHDLVQGDVRVANAELDDMIILRGDGTPVYQLAVVVDDHDMDITHVIRGDDHLTNTFRQAMIYRAMGWDLPAFAHLPLIHGPDGAKLSKRHGAQSVVEFREMGYLPEALNNYLLRLGWGHGDAEILSRDEQIQLFDLDGVGRSASRMDYVKLQHLNGVWLRQADDARLTDDIVARLADRPDVSVDEAVRARILALMPGLKERAKTLVDLADSAAFLGRHVPLAFDAKAEKLLTPEARAMLGELARDLAVIEPFDAPAIDVALRRFAEHHGHKLGQVAQPLRAAMTGGATSPGIDATLAALGRDEVMARIGAVAR
>NC_010125.1|WP_012222297.1|55389_56355_-|aspartate-carbamoyltransferase-catalytic-subunit
MTDGPRAAAPRFFPQHARHLLGLQGMHPTRIEPFLDLAESYALMSRSRKTPRDRLLGRTVINLFFEDSTRTRTSFELAAKRLGADVINMTVASSSVNKGETLLDTAATLNAMRTDLLVVRHSQSGAPALLARKVEASVVNAGDGTHEHPTQALLDALTIRRHFGTLHGLTVAICGDVSHSRVARSNIHLLTAMGARVRVVGPPTLIPGAIGALGVDVHYTMEDGLRDVDVVMMLRMQRERMSGGQVPSAREYFRFYGLDRKRLAVARPGALVMHPGPMNRGVEIDSRVADSDQSVIREQVEMGVAVRMAVLDLLSRAGDQS
>NC_010125.1|WP_012222296.1|54100_55393_-|dihydroorotase
MTATLFENVRLIDPARGLDRPGRLLVRDGVIAGTDLPGAEGAPEGAGIVDGGGSILCPGLVDMRVAIGEPGFEYRETVASAARAAAAGGITTMAVLPNSQPATDDPALVRHLRARGEETGMVSILPYGALTRRCEGGELAEIGLLNEAGAVAFTDGPRALADARMMRLALTYARGFDALVVQHPEDPSLARGGCATDGELATRLGLPGIPAAAEAIMIARDLRLLELTRGRLHFSHVSTAEGLALIRAAKARDLRVTCDTAPPYFDLNETAIGDFRTYAKLSPPLRGEADRQAVCTALADGTIDAIASDHAPCDADDKRQPFAVASAGGTGLATLLAVTLAQVHGGCLPLVEALGLLTHRPAALLRSRAGTLADGAVADLCLFNPDRAWKVEADQMPGKAQNTPFDGRALEGRVLGTWKAGRMVFGQDAP
>NC_010125.1|WP_012222295.1|53465_54104_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MNGAIPAFALPLLAAIGVLAYCIGSIPFGLLLTQFGGAGDIRTIGSGNIGATNVLRTGRRGLAAATLLLDGAKGVFAVMCGFILSPFHTGPAMAVAALFAVVGHCFPVWLKFRGGKGVATGLGAVLALSPLTGLACCAIWLGVARLTRISSAGALAAFAAMPMMLAALNHTGDGPAIPIGGLLIALLVIARHRGNIRRLVDGTEPRIGRKRP
>NC_010125.1|WP_012222294.1|52281_53469_-|DNA-protecting-protein-DprA
MIPAGPLAARLRLARTEGVGPVGYRKLLLDYGDAERALAALPARARAAGRARALRIPPAEDIAAEIDGTTALGGRIIMLGDPDYPPLLAGIHDAPPALSVLGDAALLAGCGIAIVGARNASSNGARMAESLAATLASQGLTIISGLARGIDAAAHRGAMRAGVTIAAVAGGLDRPYPPDHAELQGRIAQHGVVVTETPLGTAPQSRHFPRRNRLIAGLALGCVVVEAALRSGSLITADLAAGYGRVLFAVPGSPLDARSRGSNALLRRGAILTESEQDVLAELPAGWQGRRQPESRQPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVRRCQFSTSAILTVLSELELAGNIETLPGGSVVLPSQPDETGRTLE
>NC_010125.1|WP_012222293.1|49485_52260_-|type-I-DNA-topoisomerase
MTDVVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDENFAMDWQADERGSRQMAAIAKALRGARHLYLATDPDREGEAISWHVRAMLEEKNLLKGVDVQRVTFNEITKSAIRAAMAQPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICEREAEIESFRAREYWTVAAQFTTPGGAAFTARLTHLAGCKLDQFDLHDEAGAMAAKAAVEAGRFAVQSVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQGTMRTAQQLYEGIDLGGETVGLITYMRTDGVQMAGEAIAAIRGHIGESFGAPYVPEKARIYSTKAKNAQEAHEAIRPTDVSRTPAQMARYLNDEQRRLYELIWKRSVASQMQSAELDQVIVEIADAGGAATLRATGSMIAFDGFLKLYSEGRDDAAPKDEQDDDSRMLPPMRERDALKTGEVAADQHFTQPPPRFSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLDARRFVPEDRGRLVTAFLTSFFERYVDTQFTAGLEEQLDDISGGRADWRDVMSAFWQDFSRAVDQTKDLKISDVISALDADLAPHFFPAHPDGSDPRVCTACGTGRLGLKLGRYGAFIGCSNYPTCQFTRRLVVDPKEDGEADTLKDGMRLLGQTPGGEDVTVRRGPWGLYVQQGEPDPEDKKAKPRRATIPRGIEGDKITLDQALGLLSLPRVVGIHPETGEQIEAGLGRFGPYVKMGAVYGSLDKDDDILTVGLNRAVDVLARKLASVRTIAPHPKDGEPVIVRKGRFGPYIQHGTMVVNVPRGEAMEDVTLDQAVALLAEKGKPLKPKGKAAAKKAPARKTAARKAPAKTAAKKAAPDGDADTQARAAKPPARKAAARKTPAGKATGKTAKGKAEPGEGAGPRTRRTATEAG
>NC_010125.1|WP_012222292.1|47137_49483_-|ribonuclease-R
MGGRNPSDPQPTACPSPDVPPTDPRPPAPPQPGGGLPDREALRRFVTEASGRVGKREIARAFNLGPEHKAALRAMLRELALEGTLVPAGARRFRASAAMPEAALVQVTGTDPDGDPIARPVVWDGDGPAPVVFMHPEQKGRPALAPGERVVARLKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPGPLAPPRRHAEAGRLVPADRRAKAEWIIPAGETMGAEAEEVVVAEPLPLAGSGLKPARIVARLGPMGDARSVSLLAIHTHSIPDQFPAEALSEAERARGVSPEGREDLRDVPLITIDGEDARDFDDAVYAEPDGDGFRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGCLFAEIFIDAAGNKTRHRFGRGIMRSAARLTYDQAQAIVGNVEESQQETGLPDGLINTLFTAWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAEELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPPGALRARDLGAVLARAAQGEASGPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRALIGMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERETTERYVAAWLADRVGAEFSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPDDVWTHDEKTQTLRGRHGGLALRLGQPVTVRLVEATPVTGGLLFALVGANPAAASGPARRARGTRPR
>NC_010125.1|WP_012222305.1|65081_65372_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTEDAAGRRRLRRVARACLDFGQRVQYSVFECEVDPARWTALRARLIAETDTTKDSLRFYQLGAKGKQRVEHIGAKPVLDLDGPLLF
>NC_010125.1|WP_012222306.1|65375_66416_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRHLNTIYVTTEDAWLRKDGANVVVEVEGQERGRAPMHLLDGIMCFGRIGASPALMGACAESGLALSWLSPQGRFLARVEGPRSGNVLLRRTQYRTADSTERALPIVRNMVAAKAANQRTVIRRALRDHGPGLNAQERTRLDEAERRLTIIVRHITQAPDVDTARGMEGEAAQVYFGIFNLLIRVEGDAFTFGGRSRRPPLDRVNALLSFLYAVLGHDCRSALESVGLDPQVGFLHADRPGRNSLALDMMEELRPVLADRLAVSLINRRQVAAGDFTVSDGGAVLLNDDARKTVLVAWQDRKKKELRHPFLNESLTFGLVAHVQALLLSRHLRGELDGYPAFVWK
>NC_010125.1|WP_012222307.1|66415_67072_-|CRISPR-associated-protein-Cas4
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPDRRTGVRTVRALTIRSLTLGVFGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCAQAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTEQTARKVRAMIADCLTPPPVYKASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA
>NC_010125.1|WP_012553888.1|67080_68019_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTEATAMQNRHEFVLFFDVTNGNPNGDPDAGNMPRLDPETNQGLVSDVALKRKVRNYVSLARPDMPGFEIYMSEGMALNRQHRKAWNAIMPEVTKDESFKTLPKDEDKARALTRWMCTNFWDIRTFGAVMTTSVNSGQVRGPVQFSFARSVEPVLPLEIAITRMAATTEADAESKGGRTMGRKHIVPYGLYRMHGYISAPLASHPVKGTGFSESDLELLLEALTGMFDHDRSAARGEMATRKLIVFRHESALGNARAQDLFDRVTVQRAYQGSAHPIGSAAIDNWPPARAWGDYQVLIDRDAVPAGIEIIER
>NC_010125.1|WP_012222309.1|68011_69835_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTIQKRPGPLEALVDFYARMDDAEDPGWGREKFGWCVVIDAEGQPIDVLDQHDHDGRKPRPRLFLVPAAVKRASGIAPNFLWDKTSYVLGRTAGAGKRTAQEHEAFVAFNLKRMAETSDVGLVAFRRFLERWTPAQFDTPLFPAEMLDANIMFRLEGDRDYLHRRPAAQRLVEAALDNGHERQSFCLVTGQRAAPARLHPTIKGVEGAQTSGASLVSFNLDAFCSYDRKQGDNAPTSQAAAFRYGAALNRLLTRDGPNRLRRPIGDATVIFWADGSDAQVAKKADAWIQEAIAPNLLDADAARRIGEELTALAQGRPLSQLRPDIPPDTRFYVMGLSPNAARLSVRFWLSDSLDVFAHRLAEHYEDTRIAPSPWSRPPTVNLLLARTVAAQDKYDNIPPLLAGEIMRAILTGTPYPRTWLAAILMRLRAGDDPATGWHAAALRAVLQRRRRLTKNASDNGDVPVSLNRDYPSIGYQLGRLFAVYELAQRAALGIGVKATMRDKYFAAASAAPASIFPVIIRNSQNHLSNVRKRTPGWAGVIERELDEIFGRITPSGPHVLPRALSLEHQGEFAIGYYHQRRERIGGRMAETALQDDEQDIEDNATHD
>NC_010125.1|WP_012222310.1|69831_70503_-|type-I-C-CRISPR-associated-protein-Cas5
MGIRLHVWGERACFTRPELKSERVSYDVLTPSAARGIVEAIHWKPAIRWHIDRIHVLKPIRFQSIRRNEVGAKVSAVLAARAMTAGHTSGLGLAVDENRQQRAATILVDVAYVIEAHFTLTARAGAGDTAAKHLSMFNRRATQGQCFHRPCLGTREFPADFALIAEEAPLPASAFPPDLQAVDLGWMLHDIDFADQRTPRFFRACIESGVIAVPAADSPDLIA
>NC_010125.1|WP_012222311.1|70756_70981_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDLGERSQPAMQERERF
>NC_010125.1|WP_012222312.1|70980_71391_+|tRNA(fMet)-specific-endonuclease-VapC
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREVEHFADRLNVLPFDSAAASHTAEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEFRRVAGLRAEDWFTNVA
>NC_010125.1|WP_012222313.1|71551_73900_-|CRISPR-associated-endonuclease-Cas3''
MDIFAHSLPDDPSTERWETLRAHSLRVAALAEQFAAVFGAAHKGRALGLLHDIGKCSAAYQDYIRKPGPCHGPDHSTAGARAVVASYGPLGRLLAFAIAGHHSGLMDGSGHDGPGRSLNERLDEQAYAVPASDNWPDYCPARPTLQDLVDESPPVASTDYPGFATSFFVRMLFSCLTDADFIATEGYYAESAGLPPPARGGTITQAHLDAIRRFMKTRRRDDTPLNRLRSRILDHAIGKAALGPGLFTMTVPTGGGKTLASLSFALDHAVRHGLRRVIYVIPFTSIIEQTATVFREALGTTDGILEHHSNFDWDRRAPAGENDEEAEGADGLAKLRRDAENWDAPIIVTTSVQFFESLFAARGSQARKLHNIAGSVIILDEVQTLPLHLLRPCLAVLDELARNYGVSIVLCTATQSALRQIDDALPPGRKGRRAGLDIQDTHELAPEPAALYDALRRATVTWRKEPVSDGEIAARFAVREQMLCIVNTRAHAHDLFTAIADQDGARHLTTLMCPLHRRATLVAIRQDLKNGRPVRLVSTSLIEAGVDVDFPEVWREATGLSSITQAAGRCNREGRLDEPGPVVVFETPDPADPTQPWLVRAMRPFWQATRPILRQGLDPLSLEAIHAYFRELYFQHSHDTHGHDGLDAARIGTVRYAILEAIAQSGAGHTYPYATIARAFRMIDTVMESVIIPWDETVRQMLHALDHAPVPPAGFMRRLQQYCVPVPAPIRLKLLAAGALRTVKPEAYGDRFVYLESMDLYDARRGLKLDDPTFRHAESNVW
>NC_010125.1|WP_041249211.1|73930_74311_-|histidine-triad-nucleotide-binding-protein
MAVSGLGPYDPQNVFAKILRGEIPCRKIYENEHALAFHDIAPKAPVHALIIPKGPYVSFADFSSQASDAEIGGFTRAVGHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAALGPMLQHG

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Crispr_ID: NC_010125_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010125_2

2181482-2182177

TypeII

Consensus_repeat	Method
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CRISPRCasFinder
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CRT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	PILER-CR

10 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_010125_2

>merge|NC_010125|2|2181482-2182177|CRISPRCasFinder,CRT,PILER-CR
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCCTGGCCGGTTAATTGCGTGACGGCGGGTTCAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCATCGCATGACCTTTGGTTTCGACCGGGTATAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCTCGAAGACCGCGCTGGACGACATGGGGAAGAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCCGATTCCGATACCTTGCGCGTGCGCACTGGAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCGCAAGATAACGGCCTTCGGCCACACGAAGAAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCGCAGATTTCGATACCGGCAACGACGGTCTTAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCGAGCGGAGGCAGCTTGTGGCCCAATATGGCAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCGATCGCGCATGATGGCCGGATCAACGCTCAAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCATCGAGCGCCGGCCGGACGTCGTTGTCGCCAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCCATGGTGTCGAGCTTGCTCGGCGCGTTCTCAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

>NC_010125|2|2|2181482-2182177|CRISPRCasFinder
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CTGGCCGGTTAATTGCGTGACGGCGGGTTC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	ATCGCATGACCTTTGGTTTCGACCGGGTAT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCGAAGACCGCGCTGGACGACATGGGGAAG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CGATTCCGATACCTTGCGCGTGCGCACTGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GCAAGATAACGGCCTTCGGCCACACGAAGA
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GCAGATTTCGATACCGGCAACGACGGTCTT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GAGCGGAGGCAGCTTGTGGCCCAATATGGC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GATCGCGCATGATGGCCGGATCAACGCTCA
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	ATCGAGCGCCGGCCGGACGTCGTTGTCGCC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CATGGTGTCGAGCTTGCTCGGCGCGTTCTC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

>NC_010125|2|2|2181482-2182177|CRT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CTGGCCGGTTAATTGCGTGACGGCGGGTTC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	ATCGCATGACCTTTGGTTTCGACCGGGTAT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCGAAGACCGCGCTGGACGACATGGGGAAG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CGATTCCGATACCTTGCGCGTGCGCACTGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GCAAGATAACGGCCTTCGGCCACACGAAGA
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GCAGATTTCGATACCGGCAACGACGGTCTT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GAGCGGAGGCAGCTTGTGGCCCAATATGGC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GATCGCGCATGATGGCCGGATCAACGCTCA
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	ATCGAGCGCCGGCCGGACGTCGTTGTCGCC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CATGGTGTCGAGCTTGCTCGGCGCGTTCTC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

>NC_010125|2|2|2181614-2182177|PILER-CR
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCGAAGACCGCGCTGGACGACATGGGGAAG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CGATTCCGATACCTTGCGCGTGCGCACTGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GCAAGATAACGGCCTTCGGCCACACGAAGA
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GCAGATTTCGATACCGGCAACGACGGTCTT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GAGCGGAGGCAGCTTGTGGCCCAATATGGC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	GATCGCGCATGATGGCCGGATCAACGCTCA
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	ATCGAGCGCCGGCCGGACGTCGTTGTCGCC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CATGGTGTCGAGCTTGCTCGGCGCGTTCTC
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010125.1\|WP_012553075.1\|2180192_2181086_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_010125.1\|WP_012553079.1\|2186380_2187226_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NC_010125.1\|WP_012225938.1\|2188334_2189006_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_010125.1\|WP_012225910.1\|2181095_2181425_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_010125.1\|WP_012225900.1\|2175230_2175818_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NC_010125.1\|WP_012225904.1\|2176265_2176754_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|107227
NC_010125.1\|WP_050935129.1\|2172990_2173749_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224060
NC_010125.1\|WP_041249771.1\|2187352_2188234_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_010125.1\|WP_041249387.1\|2177094_2180235_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_010125.1\|WP_012225916.1\|2182894_2183812_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NC_010125.1\|WP_081434755.1\|2190811_2191063_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NC_010125.1\|WP_012225893.1\|2171869_2172961_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281901
NC_010125.1\|WP_012225922.1\|2185226_2186384_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NC_010125.1\|WP_012225945.1\|2191071_2191422_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392
NC_010125.1\|WP_012225880.1\|2171063_2171873_+\|LPS-export-ABC-transporter-periplasmic-protein-LptC	unknown	unknown	gnl\|CDD\|227667
NC_010125.1\|WP_012553073.1\|2175888_2176152_-\|DUF1150-family-protein	unknown	unknown	gnl\|CDD\|369004
NC_010125.1\|WP_012225918.1\|2183808_2184585_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_010125.1\|WP_012225920.1\|2184591_2185230_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378270
NC_010125.1\|WP_012225898.1\|2173759_2175136_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NC_010125.1\|WP_012225914.1\|2182309_2182849_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668

Protein	Function_ID	Function_description	E-value
NC_010125.1\|WP_012553075.1\|2180192_2181086_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.56229e-109
NC_010125.1\|WP_012553079.1\|2186380_2187226_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	1.36566e-174
NC_010125.1\|WP_012225938.1\|2188334_2189006_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.12156e-95
NC_010125.1\|WP_012225910.1\|2181095_2181425_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.97767e-35
NC_010125.1\|WP_012225900.1\|2175230_2175818_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	2.16078e-21
NC_010125.1\|WP_012225904.1\|2176265_2176754_-\|Hsp20-family-protein	gnl\|CDD\|107227	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers.	1.2409e-36
NC_010125.1\|WP_050935129.1\|2172990_2173749_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224060	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only].	1.07247e-151
NC_010125.1\|WP_041249771.1\|2187352_2188234_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	4.05761e-160
NC_010125.1\|WP_041249387.1\|2177094_2180235_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	3.41464e-129
NC_010125.1\|WP_012225916.1\|2182894_2183812_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	5.36131e-143
NC_010125.1\|WP_081434755.1\|2190811_2191063_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	3.06657e-37
NC_010125.1\|WP_012225893.1\|2171869_2172961_+\|hypothetical-protein	gnl\|CDD\|281901	pfam03968, OstA, OstA-like protein. This family of proteins are mostly uncharacterized. However the family does include E. coli OstA that has been characterized as an organic solvent tolerance protein.	3.69155e-06
NC_010125.1\|WP_012225922.1\|2185226_2186384_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NC_010125.1\|WP_012225945.1\|2191071_2191422_-\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	1.20406e-25
NC_010125.1\|WP_012225880.1\|2171063_2171873_+\|LPS-export-ABC-transporter-periplasmic-protein-LptC	gnl\|CDD\|227667	COG5375, COG5375, Uncharacterized protein conserved in bacteria [Function unknown].	4.16524e-11
NC_010125.1\|WP_012553073.1\|2175888_2176152_-\|DUF1150-family-protein	gnl\|CDD\|369004	pfam06620, DUF1150, Protein of unknown function (DUF1150). This family consists of several hypothetical bacterial proteins of unknown function.	6.84269e-12
NC_010125.1\|WP_012225918.1\|2183808_2184585_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.16901e-117
NC_010125.1\|WP_012225920.1\|2184591_2185230_-\|hypothetical-protein	gnl\|CDD\|378270	pfam09843, DUF2070, Predicted membrane protein (DUF2070). This is a family of Archaeal 7-TM proteins. There are 6 closely assembled TM-regions at the N-terminus followed by a long intracellular, from residues 220-590, highly conserved region, of unknown function, terminating with one more TM-region. The short 25 residue section between TMs 5 and 6 might lie on the outer surface of the membrane and be acting as a receptor (from TMHMM).	0.00561496
NC_010125.1\|WP_012225898.1\|2173759_2175136_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	0
NC_010125.1\|WP_012225914.1\|2182309_2182849_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.36597e-67

>NC_010125.1|WP_012225910.1|2181095_2181425_+|CRISPR-associated-endonuclease-Cas2
MKAEDIRFMWLLVFFDLPVRTKEQRRRASRFRHFLKDDGFLMLQFSVYARICRGQDAVEKHVRRVRSNLPKEGSVRTLQITDRQYGRMELMLGLAPKTERIGPSQMVLL
>NC_010125.1|WP_012553075.1|2180192_2181086_+|type-II-CRISPR-associated-endonuclease-Cas1
MAWRGVHISHPSRLTHRNRQLVVAQDGGEVSLAVEDIACLILDTRQVSITGSLLSALAENGVAMIVPDARHHPAGILLPFHQHHAQAHIAHAQISISQPLKKRLWQTLVVAKIRNQAALLDQLGRPQGQTIAAMAGRVASGDPGNVEAQAARAYWASLFSDFTRANENDRRNALLNYGYAIMRAAIARACVALGLLPAFGVHHASKTNAFNLVDDLIEPFRPFVDRMAHDRALEHVGDTLSIEDRRQMSTILNDNAAIGRERMTVLAATEAVAMSVVRAIEHGSAALLSTPTLKARD
>NC_010125.1|WP_041249387.1|2177094_2180235_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MIDESLTFGIDLGIGSCGWAVLRRPSAFGRKGVIEGMGSWCFDVPETSKERTPTNQIRRSNRLLRRVIRRRRNRMAAIRRLLHAAGLLPSTDSDALKRPGHDPWELRARGLDKPLKPVEFAVVLGHIAKRRGFKSAAKRKATNISSDDKKMLTALEATRERLGRYRTVGEMFARDPDFASRRRNREGKYDRTTARDDLEHEVHALFAAQRRLGQGFASPELEEAFTASAFHQRPMQDSERLVGFCPFERTEKRAAKLTPSFERFRLLARLLNLRITTPDGERPLTVDEIALVTRDLGKTAKLSIKRVRTLIGLEDNQRFTTIRPEDEDRDIVARTGGAMTGTATLRKALGEALWTDMQERPEQLDAIVQVLSFFEANETITEKLREIGLTLAVLDVLLTALDAGVFAKFKGAAHISTKAARNLLPHLEQGRRYDEACTMAGYDHAASRLSHHGQIVAKTQFNALVTEIGESIANPIARKALIEGLKQIWAMRNHWGLPGSIHVELARDVGNSIEKRREIEKHIEKNTALRARERREVHDLLDLEDVNGDTLLRYRLWKEQGGKCLYTGKAIHIRQIAATDNSVQVDHILPWSRFGDDSFNNKTLCLASANQQKKRSTPYEWLSGQTGDAWNAFVQRIETNKELRGFKKRNYLLKNAKEAEEKFRSRNLNDTRYAARLFAEAVKLLYAFGERQEKGGNRRVFTRPGALTAALRQAWGVESLKKQDGKRINDDRHHALDALTVAAVDEAEIQRLTKSFHEWEQQGLGRPLRRVEPPWESFRADVEATYPEVFVARPERRRARGEGHAATIRQVKERECTPIVFERKAVSSLKEADLERIKDGERNEAIVEAIRSWIATGRPADAPPRSPRGDIITKIRLATTIKAAVPVRGGTAGRGEMVRADVFSKPNRRGKDEWYLVPVYPHQIMNRKAWPKPPMRSIVANKDEDEWTEVGPEHQFRFSLYPRSNIEIIRPSGEVIEGYFVGLHRNTGALTISAHNDPKSIHSGIGTKTLLAISKYQVDRFGRKSPVRKEVRTWHGEACISPTPPG
>NC_010125.1|WP_012225904.1|2176265_2176754_-|Hsp20-family-protein
MSGRLFASPMFLGFDHLEQMLERASKGTADGYPPYNIEQISPTALRITLAVAGFVMEDLQITQEDNQLVIRGRQTDDSQGRVFLHRGIAARQFQKAFVLAEGIEVGNAWLDNGLLHIDLLRPQPEVRVRRIEITQGRASAPPAEIDLPKVRAQRVVRVIEED
>NC_010125.1|WP_012553073.1|2175888_2176152_-|DUF1150-family-protein
MRITTQNGRVVLQADQTSLPADVHHLTDTQLLSLGVSRMAYIKAVVIEGQDVFAIHAADGTPMALTEDEATAIEAILQHEMVPALVH
>NC_010125.1|WP_012225900.1|2175230_2175818_+|ribosome-associated-translation-inhibitor-RaiA
MQISVAGKQIDLSDALKHRVTAHLDRLADKFFDRALDAQVTFSRARSFFTCDINLHAARGLTLRGEGEAADAHGAFDDAAEHIARRLRRYRERVNDHIRTLPRRKTPEVGRSYILRPAESDGRVRGEAMHDTGPYATIVAERAAEIATLSVSEAVMRLDLAASTLLMFRNSTSDQINVIYRRQDGNIGWLDPSPA
>NC_010125.1|WP_012225898.1|2173759_2175136_+|RNA-polymerase-factor-sigma-54
MTIGPRLALRQAQTLVMTPQLRQAIHLLQLSNLDACSFIEQELERNPLLERANLAGLEELRPKVVAHGARHDPRLERVPDQDWAATAGTLPGPAPSLHERLAQQVRLSWRDAGDRLVGAYLITLLDADGRLVPPTAVIAQSLGTTFDHVERVRQTMMQFEPTGLFAHDLGECLAAQLRERDRLDPAMAVLLRHLDLLARRDLRRLQGLCGVDAEDLADMIAEVRTLSPRPARDFGDPAACSVIPDVLLQPAPDGDWMLELNPETMPSVVVNSALSTRVALRARREDRPFLNERLASANWLVRALQQRADTIIRVATAIMRRQRGFLDHGIGHLRPLVLRDIAETVGLHESTVSRVTANKYIATPRGLFELKYFFTTAIPGRAGGADHSAEAIRHRIKTLISQESDRKILSDDAIVTRLRKEGIDISRRTVAKYRDALRIPNSTQRKRDKALIGLKPEA
>NC_010125.1|WP_050935129.1|2172990_2173749_+|LPS-export-ABC-transporter-ATP-binding-protein
MQGTAIAHDLPAADGLIANGIGKTYKKRPVVRNVSIQVHRGEAVGLLGPNGAGKTTSFYMIVGLVQPDTGAITLDGTDITQLPMYRRARLGIGYLPQEASIFRGLNVEQNIMAALEVVEADPERREAMLDGLLGEFGISHLRRAPSLALSGGERRRLEIARALASQPHYILLDEPLAGIDPIAVGEIRDLVSHLKDRGIGVLITDHNVRETLEVIDRAYIMHSGQVLMEGRPEEIVANEDVRRVYLGENFSL
>NC_010125.1|WP_012225893.1|2171869_2172961_+|hypothetical-protein
MTAFPKVATALLLGGVAACVAPMGARGQALDLSHGGQITVTAAGGFDWDQKSQTVTAYDQAQAVRGNVTVTGDRLIAFYRKKAAAPGAAQGGAPNNGAAAPASPPPAAQAPAPQAPATQSTSNGTDSGSNEVYRLNAIGHVHIFTDTDQAWGDKAIYDIDQSVMIMTGKAMKMVTPQDVLTARDSMEYYSQTRISIGRGNATVTTNDGRQIRADVLVGYSAPAQPATQSPAQPPPSPPPGTQPGAAPGTGKDPLTSSGKLEKVNAFGHVFVRTQTETVTGDRGVYVPDTGIARIVGNVHITRGQNQINGAAAIVNMHTGIATMTERAGSRVSGLIVPNEANSSPGGARPTQAGTKPGPAGKTP
>NC_010125.1|WP_012225880.1|2171063_2171873_+|LPS-export-ABC-transporter-periplasmic-protein-LptC
MSASPPPPSRDPTAPRREDFARSADDVARQRTVLHHRTTRARHLPNPDDIARRRMLVRWAKWVLPAAALALLGSIAAWPAIDRLVNAQRNALHEMENLRIESGNMLGATYRGLDDHNRPYMITADQAQQVTPDRINLTGPVADTFTQGNDWLTIRSDQGVYMQHEQLLDLTRNVVLYRADGVIMTGVTADMDLKQGIVASDQWVHAEGPFGVLDAQGFILSQHEGIGLFRGPGRLILNDDSHAHPPAATPSSAAPPASSIPPARTEPTR
>NC_010125.1|WP_012225914.1|2182309_2182849_+|peptide-deformylase
MIDRDAIAAAIPMPILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLRFAIVDLGEEGERQPLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEELEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQKR
>NC_010125.1|WP_012225916.1|2182894_2183812_+|methionyl-tRNA-formyltransferase
MRLAFMGTPDFAVPALHALHEAGHEIAVVYSQPPRPAGRGQAVRPQPVHLAAEALGIPVRVPTRLRANHDEHAFFRALDLDAAVVAAYGLILPGAMLTPRAGARLNVHASLLPRWRGAAPIQAAILAGDDESGVTIMQMDEGLDTGAMLLTGRVALTPATTASTLHDDLAAMGGRLIVAALANSETAAIPQPAEGATYAARLTREDGRIDWTRDAVDIDRQVRALTPWPGTFTTLDGTVLKIGAATPIDGPRDAVPGTVLDDRLTVACGQGTLRLTRIQRPGRGMMEADAFLRGQPVPVGTRLGS
>NC_010125.1|WP_012225918.1|2183808_2184585_+|tRNA-pseudouridine(38-40)-synthase-TruA
MTAPSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHATGQAAHLDFPGDVRLNDSTVRDALNFHMKPYPVAVLRACPVDTEWSARFSAIRRSYRYRILNRRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLGVVRQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDGLYLTGVGYDPDPF
>NC_010125.1|WP_012225920.1|2184591_2185230_-|hypothetical-protein
MMQGRGVPQGPLPNSAGGIFRGMMLLGRGRREGLNCFGATQDSVLTALAPRVALWLVGALLTLVQAPTGLSGTKILFSLCLVLTPIIVTHQLARLWGREALWPRYMTAALWCDWLVLFVMLIAVAVVAMVLPAGLNAVRSALILNGIVFAYNLWLTWFIARVGLALGVWRAILVVLAVAAAILVLGEAAAVLPPHYAPWQDFLALPSAHAPQ
>NC_010125.1|WP_012225922.1|2185226_2186384_-|succinyl-diaminopimelate-desuccinylase
MTGALTPASTPALTLARDLIRAPSVTPDDGGAIGVLTAALRGLGFDVTDLPFGEGPARTPNLFARLGRSGPHLCFAGHTDVVPPGDGGWTSGPFEAALRDGCLYGRGACDMKGGIAAFVGAVARILESGRTLRGSVSLLITGDEEGPATFGTVKVLEWMAAHGQVPDFCVVGEPTNPDHLGDVIKIGRRGSLNARIVVPGIQGHVAYPHRADNPVHRLLAILSDLTARPLDQGTEWFEPSSLQVTTVDVGNEATNVIPGRATARLNIRFNDLHTGQGLADWIRGVAHVHAPGAEVTVQISGEAFRTEPTPELDMLAASIQAVTGRAPRLDTGGGTSDARFISRYCPVAEFGLVGASMHKVDEHVPVADLLALTDIYAAFLERLMG
>NC_010125.1|WP_012553079.1|2186380_2187226_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLDSGALRVATPTDAGWVVNEWLKKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFGQAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTMVDTWVTIGSCAQIGRNCHISGGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTTGEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD
>NC_010125.1|WP_041249771.1|2187352_2188234_-|acetylglutamate-kinase
MQEAQERAAVLAQALPFLRRYAGDTIVVKYGGHAMVDDSLSNAFGHDIALLKLVGVNPVIVHGGGPQISAMLTRLQIPSTFVDGLRVTDAAMVDVIEMVLAGKVNKQVAGLINQAGALAVGISGKDGGLITARRLQRTTRDASGQERALDLGFVGEPTHIDPRVLYALSGSGLIPVVAPVGIGEAGETYNINADTAAGAIAGAVHATRLLMLTDVPGVLDETGALIPELTAEEARRGIASGMISGGMIPKVETCLEAVRSGARAAVILDGRVPHACLLELFTEAGPGTLIRGE
>NC_010125.1|WP_012225938.1|2188334_2189006_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSDFNATPRTPDEEERLLEAGRLLFAGPCDFFFGAQKLEQLPPPGAPEIAFAGRSNVGKSSLINALTGRRALARASSEPGRTKQLNFFDLGGRLTLVDMPGYGYARAAKDVKEDWQGMMFAYLRGRPTLQRVILLLDSRIELKASDREIMTLLDRAAVTFQIVLTKCDAPRPGALEAKRSQAADLARQHPAAYPGTFATSSDTGLGIPELRAELAALALPQAG
>NC_010125.1|WP_081434755.1|2190811_2191063_-|membrane-protein-insertion-efficiency-factor-YidD
MAWLLIGAIRVYQWVLSPVLGPNCRFVPSCSNYAVEAVRRHGPFRGAILAAWRILRCNPWNIGGYDPVPSRERARRSCCSSHR
>NC_010125.1|WP_012225945.1|2191071_2191422_-|ribonuclease-P-protein-component
MADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARIGFTVTKKVGNAVVRNRTRRRLREAVRVVEREEPLNGVDLVLIGRDGTRGRTFAALVGDLRRTLRKAGVRGAE

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Crispr_ID: NC_010125_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010125_3

2253747-2255116

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCACGTGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCACGTGCGGGGAACAC	CRT
CGGTTCATCCCCGCACGTGCGGGGAACAC	PILER-CR

22 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_010125_3

>merge|NC_010125|3|2253747-2255116|CRISPRCasFinder,CRT,PILER-CR
AGATTCATCCCTGCATATGCGAGGAACACAAGGCGGCCTCGTCCAGGATCACCAGACCCTGCGGTTCATCCCCGCACGTGCGGGAACACGTCCCCCTGCTCGGCAACCCCAAACTCAAGATCGGTTCATCCCCGCACGTGCGGGGAACACGCCGCGACGGTGAAGGGGAGGTTGTTCGACGCCGGTTCATCCCCGCACGTGCGGGGAACACGAGTCACCGGATTCCCATCTCATCCTAATATCCGGTTCATCCCCGCACGTGCGGGGAACACCTTTTCTCAGCCGACACTCTCCATGCAAGAACCGGTTCATCCCCGCACGTGCGGGGAACACACGCGGGTCTATGAGATTCCGATCATGCAGGACGGTTCATCCCCGCACGTGCGGGGAACACCATTGACCCGGCACCCTCCCCATGTGACGTTTCGGTTCATCCCCGCACGTGCGGGGAACACTGGCTCGGGACCATCTTAGCGGACGACATGGCCGGTTCATCCCCGCACGTGCGGGGAACACGGCGTAGCCCGCAGCACCGCCCAGCCGGGGACCGGTTCATCCCCGCACGTGCGGGGAACACCTTAACTGGATCACGATCGCGCTGATCCTCTACGGTTCATCCCCGCACGTGCGGGGAACACTTCTCGGCACTCGACCCGCGCCCAGACGGCTGCGGTTCATCCCCGCACGTGCGGGGAACACCGCGGGTCGCTCGGCAATCGCGCTGCTATCGCCGGTTCATCCCCGCACGTGCGGGGAACACGCCGGACGAGCGCGTACATGCTCTGGTGCATCCGGTTCATCCCCGCACGTGCGGGGAACACCAGCGGCGATCCTGAGCGGTTCCACGAGGCGGCGGTTCATCCCCGCACGTGCGGGGAACACATCTGCCTCAGACCTTCGATGCGGAGCAGGCCCGGTTCATCCCCGCACGTGCGGGGAACACGACAATCGTTCCCTCCCTCAAAGATGATTATTCGGTTCATCCCCGCACGTGCGGGGAACACACGTTCTCGCGCGTGCTGTCCACGTTCCTGACCGGTTCATCCCCGCACGTGCGGGGAACACAGCGCGGCGTGGCGGGAATCAAGGTCGTCGGTCGGTTCATCCCCGCACGTGCGGGGAACACACCATCCGTTCGGCGGTGATGCCGCGAACGATCGGTTCATCCCCGCACGTGCGGGGAACACTTGCGTCAAACGAAGCACAATATCAGGCGCAGCGGTTCATCCCCGCACGTGCGGGGAACACTTGCCTCTAACGAGGCGCAGTATCAGGCACAGCGGTTCATCCCCGCACGTGCGGGGAACACCCGTCGTTTCGATCGTCACGGCGATCATCGGCCGGTTCATCCCCGCACGTGCGGGGAACAC

>NC_010125|3|3|2253747-2255116|CRISPRCasFinder
AGATTCATCCCTGCATATGCGAGGAACAC	AAGGCGGCCTCGTCCAGGATCACCAGACCCTG
CGGTTCATCCCCGCACGTGCGGGAACACG	TCCCCCTGCTCGGCAACCCCAAACTCAAGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GAGTCACCGGATTCCCATCTCATCCTAATATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTTTCTCAGCCGACACTCTCCATGCAAGAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGCGGGTCTATGAGATTCCGATCATGCAGGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	CATTGACCCGGCACCCTCCCCATGTGACGTTT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TGGCTCGGGACCATCTTAGCGGACGACATGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTAACTGGATCACGATCGCGCTGATCCTCTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTCTCGGCACTCGACCCGCGCCCAGACGGCTG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGCGGGTCGCTCGGCAATCGCGCTGCTATCGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGGACGAGCGCGTACATGCTCTGGTGCATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CAGCGGCGATCCTGAGCGGTTCCACGAGGCGG
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATCTGCCTCAGACCTTCGATGCGGAGCAGGCC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GACAATCGTTCCCTCCCTCAAAGATGATTATT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACCATCCGTTCGGCGGTGATGCCGCGAACGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCGTCAAACGAAGCACAATATCAGGCGCAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCCTCTAACGAGGCGCAGTATCAGGCACAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCGTCGTTTCGATCGTCACGGCGATCATCGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC

>NC_010125|3|3|2253747-2255116|CRT
AGATTCATCCCTGCATATGCGAGGAACAC	AAGGCGGCCTCGTCCAGGATCACCAGACCCTG
CGGTTCATCCCCGCACGTGCGGGAACACG	TCCCCCTGCTCGGCAACCCCAAACTCAAGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GAGTCACCGGATTCCCATCTCATCCTAATATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTTTCTCAGCCGACACTCTCCATGCAAGAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGCGGGTCTATGAGATTCCGATCATGCAGGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	CATTGACCCGGCACCCTCCCCATGTGACGTTT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TGGCTCGGGACCATCTTAGCGGACGACATGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTAACTGGATCACGATCGCGCTGATCCTCTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTCTCGGCACTCGACCCGCGCCCAGACGGCTG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGCGGGTCGCTCGGCAATCGCGCTGCTATCGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGGACGAGCGCGTACATGCTCTGGTGCATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CAGCGGCGATCCTGAGCGGTTCCACGAGGCGG
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATCTGCCTCAGACCTTCGATGCGGAGCAGGCC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GACAATCGTTCCCTCCCTCAAAGATGATTATT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACCATCCGTTCGGCGGTGATGCCGCGAACGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCGTCAAACGAAGCACAATATCAGGCGCAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCCTCTAACGAGGCGCAGTATCAGGCACAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCGTCGTTTCGATCGTCACGGCGATCATCGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC

>NC_010125|3|3|2253868-2255116|PILER-CR
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GAGTCACCGGATTCCCATCTCATCCTAATATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTTTCTCAGCCGACACTCTCCATGCAAGAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGCGGGTCTATGAGATTCCGATCATGCAGGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	CATTGACCCGGCACCCTCCCCATGTGACGTTT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TGGCTCGGGACCATCTTAGCGGACGACATGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTAACTGGATCACGATCGCGCTGATCCTCTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTCTCGGCACTCGACCCGCGCCCAGACGGCTG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGCGGGTCGCTCGGCAATCGCGCTGCTATCGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGGACGAGCGCGTACATGCTCTGGTGCATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CAGCGGCGATCCTGAGCGGTTCCACGAGGCGG
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATCTGCCTCAGACCTTCGATGCGGAGCAGGCC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GACAATCGTTCCCTCCCTCAAAGATGATTATT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACCATCCGTTCGGCGGTGATGCCGCGAACGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCGTCAAACGAAGCACAATATCAGGCGCAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCCTCTAACGAGGCGCAGTATCAGGCACAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCGTCGTTTCGATCGTCACGGCGATCATCGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010125.1\|WP_012226040.1\|2245656_2246403_+\|NADPH-dependent-F420-reductase	unknown	unknown	gnl\|CDD\|224996
NC_010125.1\|WP_012226045.1\|2248090_2249674_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|226593
NC_010125.1\|WP_012226059.1\|2264359_2265691_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NC_010125.1\|WP_041249392.1\|2252529_2253306_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NC_010125.1\|WP_012226056.1\|2259012_2259603_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_010125.1\|WP_012226036.1\|2243978_2244692_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NC_010125.1\|WP_012226054.1\|2257166_2257949_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_010125.1\|WP_012226060.1\|2265755_2266157_-\|hypothetical-protein	unknown	unknown	unknown
NC_010125.1\|WP_041249776.1\|2261621_2264315_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_010125.1\|WP_012226053.1\|2256483_2257170_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_010125.1\|WP_012226046.1\|2249645_2251046_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NC_010125.1\|WP_012226037.1\|2244706_2244844_-\|hypothetical-protein	unknown	unknown	unknown
NC_010125.1\|WP_012553112.1\|2255184_2255532_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_010125.1\|WP_012226041.1\|2246469_2247021_-\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NC_010125.1\|WP_012226039.1\|2245052_2245649_+\|cupin	unknown	unknown	gnl\|CDD\|380348
NC_010125.1\|WP_012226043.1\|2247354_2247972_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NC_010125.1\|WP_012226055.1\|2257957_2259016_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_010125.1\|WP_012553108.1\|2243005_2243968_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381313
NC_010125.1\|WP_012226057.1\|2259599_2261255_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_010125.1\|WP_012553113.1\|2255512_2256472_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
NC_010125.1\|WP_012226040.1\|2245656_2246403_+\|NADPH-dependent-F420-reductase	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	1.96427e-46
NC_010125.1\|WP_012226045.1\|2248090_2249674_+\|peptide-chain-release-factor-3	gnl\|CDD\|226593	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].	0
NC_010125.1\|WP_012226059.1\|2264359_2265691_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NC_010125.1\|WP_041249392.1\|2252529_2253306_+\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	2.70969e-75
NC_010125.1\|WP_012226056.1\|2259012_2259603_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.21488e-18
NC_010125.1\|WP_012226036.1\|2243978_2244692_+\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	0.00920611
NC_010125.1\|WP_012226054.1\|2257166_2257949_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	4.10357e-30
NC_010125.1\|WP_041249776.1\|2261621_2264315_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	8.72872e-124
NC_010125.1\|WP_012226053.1\|2256483_2257170_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.83059e-46
NC_010125.1\|WP_012226046.1\|2249645_2251046_-\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	2.46847e-108
NC_010125.1\|WP_012553112.1\|2255184_2255532_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.53575e-55
NC_010125.1\|WP_012226041.1\|2246469_2247021_-\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	6.27243e-20
NC_010125.1\|WP_012226039.1\|2245052_2245649_+\|cupin	gnl\|CDD\|380348	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to YjlB, a Bacillus subtilis protein of unknown function with a cupin beta barrel fold. The active site of members of the cupin superfamily is generally located at the center of a conserved barrel and usually includes a metal ion. The different functional classes in this superfamily include single domain bacterial isomerases and epimerases involved in the modification of cell wall carbohydrates, two-domain bicupins such as the desiccation-tolerant seed storage globulins, and multidomain nuclear transcription factors involved in legume root nodulation.	2.43595e-78
NC_010125.1\|WP_012226043.1\|2247354_2247972_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	4.39048e-113
NC_010125.1\|WP_012226055.1\|2257957_2259016_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	7.16397e-109
NC_010125.1\|WP_012553108.1\|2243005_2243968_+\|aldo/keto-reductase	gnl\|CDD\|381313	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B, AKR12C families of aldo-keto reductase (AKR). Streptomyces fradiae TylCII, Saccharopolyspora erythraea EryBII, and Streptomyces avermitilis aveBVIII are founding members of aldo-keto reductase family 12 member A1 (AKR12A1), B1 (AKR12B1), and C1(AKR12C1), respectively. TylCII acts as a NDP-hexose 2,3-enoyl reductase. EryBII is a mycarose/desosamine reductase involved in L-mycarose and D-desosamine production. aveBVIII functions as a dTDP-4-keto-6-deoxy-L-hexose-2,3-reductase.	1.30982e-117
NC_010125.1\|WP_012226057.1\|2259599_2261255_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.81413e-117
NC_010125.1\|WP_012553113.1\|2255512_2256472_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.3534e-135

>NC_010125.1|WP_041249392.1|2252529_2253306_+|RNA-methyltransferase
MTGRDGGADIGPIGNSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGELDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRRARGQ
>NC_010125.1|WP_012226046.1|2249645_2251046_-|MATE-family-efflux-transporter
MPDPACPDSSSPPGELRLLLRIAAPIALAQIAQMAMGVTDSVLLGGLGADALAIGGLSTMLFFTLLVMLQANLGAGGVLIAQARGSGDEGRIASIHAMLLVVALLLCVPFLALLTQAGPLLRLMHQPATLVGPVTSFLHILMWGVPPALIGTGVVEVVLPALDAQGVLLRVMPVVAVVNGVLNAGLIHGWFGLPAMGLRGSALATTLTMWGAALVLLAMVHSRPHLRLLLWPPRPRAADMAVLLRLGVPMMMATGAEIMLFQVTALQAATLGPHALAAHQIVLNLTATTYMAIMALGQAANVRVAYWTGAARPARARHAAWVAVGTAIAGMVASGCLIYLFRARLVAFYLDPSVPANAESTHIAMAALLLAAVFQVADGTQAVLVGALRGRGDAIVPMVLAVLGYWGIGFPLGTWLAFRCGLGVVGLWGGVACALVAVALMLGVRAARTLGDRGPAAVSVSRCRSA
>NC_010125.1|WP_012226045.1|2248090_2249674_+|peptide-chain-release-factor-3
MDAPVNAEPATAPTSGLAATIAREIARRRTFAIISHPDAGKTTLTERILRAGGAIQMAGNVRAKGERRRTRSDWMGIERDRGISVVTSVMTFEYGGCIFNLLDTPGHEDFSEDTYRTLTAVDAAVMVIDAAKGIEDRTRKLFEICRLRDIPIVTFINKMDREAQDPFTLLDEISSALALDTAPATWPVGRAAQFVGTYDLRARSLHVSTPLEQSDPRMVQLAEDLELAEAALPVFDRDSFNAGHLTPVFFGSAMKEIGVTDLLDALVAFGPPPRDQATESRTVRADETGLTALVFKIQANMDPNHRDRMAFARICSGRLERGMRLKHVRIGKQFALHTPQFFFARDRQLAEEAFAGDVVGIPNHGTLRIGDTLTEGEDLRFTGVPHFAPEILRRVRLDDAMKAKKLRQALTELAEEGVVQLFRPQDGAPPIVGVVGTLQLDVLQARLSGEYGVAIGFESTPYNLARWVTGDRAKLETFAMANRSAMADDLDGDPVFLAGSAFMMRRTAEMNLDLSFHDIKQIGIETR
>NC_010125.1|WP_012226043.1|2247354_2247972_+|30S-ribosomal-protein-S4
MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSVQLMAKQKLKGYYGNISEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRLKFAMTPFAARQFVSHGHITVNGRKVNIPSYIVRDEDVIEVREKSKHLAIVLDAAQSGERDVPEYMEVDHRQMKGRFLRAPKLSDVPYPVQMEPNLVIEFYSR
>NC_010125.1|WP_012226041.1|2246469_2247021_-|HdeD-family-acid-resistance-protein
MATPFTQRWGLFVLLGVVSIALGIVAWIDAISVTLASTMIIGLVLVIAGAVQMFHAFSVRDWGGFLLSLLGGVLYIVGGFILMQEPVTGSIVLTLVIAACLIISGTTRMLIAARHRELNGWWIILGGGLISLLVGACLYLTLPWSGLWLIGTFIAVELIAAGVGWIQFGLALRQANLLSGSGV
>NC_010125.1|WP_012226040.1|2245656_2246403_+|NADPH-dependent-F420-reductase
MTEPTSLPPHVLRRRALLAGLSALLLPRLSRAATSLPIGIIGSGHVGSTLGGLWLRAGHPVMFSARDLSSAQSVAAGLGALARAGTPEQAARFGEAVLLAVPYGALPALGASLHGVLAGKVVIDACNPYSWRDGDVARLARQQGAGPTTQSFFPGAHVIRAFNSEDMSTISVEAHRLPPLLGIPYAGDDAAAMDVVRGLIVDAGFDPVRAGPLSVARLFQPGGPEFEADLTAPELRGRLEQDQHGAGR
>NC_010125.1|WP_012226039.1|2245052_2245649_+|cupin
MTVSRRAFQTFLAGLGLSLAGQEVRAASHAGHDVESFMLARNGWVPNNDHLPVLYYRNAAALPADDPASGFERLFTANGWPPQWRWGVYDFHHFHSTAHEVLGVASGSARLMLGGPGGRIVDVRAGDVVVLPAGTGHRNLGSDDDFLVVGAYPPDQHYDLRRSGLSPDELARMAHVPFPASDPVSGAGGSLPALWHQT
>NC_010125.1|WP_012226037.1|2244706_2244844_-|hypothetical-protein
MPDIEDHSAPAPLRDVVQLMGAVTFVLAMLAVGWHAAHVSGVWPG
>NC_010125.1|WP_012226036.1|2243978_2244692_+|NUDIX-hydrolase
MRWPSRWPSIALDSGLTVRVAGHMPDLPAPVAAEVEAIWRERQAANPALFNGRVFTADRITTRGIVGHWTTYHRVLAQMTRPTLYPALRLKPLAVTGILHTPDGIVLGRRAPHSTYLAGWWQTPPAGSVESRHGENKVDLTAQILAEAQEELGLAPDMLTVAGPVRATRHPATRIVDIGIRLDTALPFDRVLQGWHAGGNDEYDRLAIVKPNQNPEDVVGPHILPGTREYLDVDRRS
>NC_010125.1|WP_012553108.1|2243005_2243968_+|aldo/keto-reductase
MEQRHLGRSGLRVSAVGLGCNNLGGRIGLEESRMVVHQALDSGITLFDVADVYGRRESHCGASEEVLGAILGSRREDIVLATKFGMPMAADGSMQGASRRYIRQAVEASLTRLRTDRIDLYQVHVPDPDTPIDETLRALDDLIRDGKVLYAGCSNFPAWQVADAHHVARAGGFSGFISCQDELSLLARDALRELVPAMRRYGLGLLPYFPLASGVLTGKYHRDIPPPPGSRLSEWTHLRDRYLTDTNWTILDGLGSVARAHGRTLTELAFGWLLSHDVVGSVIAGATRPNQVIENVAAATRPLTPEECDAITAILPDHAR
>NC_010125.1|WP_012553112.1|2255184_2255532_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVIVVENAPPRLRGRLAVWLLEVRAGVYVGTYGQRVREMIWGQVCAYIEDGNAVMAWAAPNDAGFEFDTCGRNRRVAVDFDGLRLVSFGPEAALPAQPGPAATTPPRRRGRGVL
>NC_010125.1|WP_012553113.1|2255512_2256472_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRPMPGLPPPRPIPLKERSSLLFVEKGQIDVLDGAFVLVGHNGIRTHIPIGGLACLMLEPGTRVSHAAAALAARAGTLLIWVGEAGVRLYASGQPGGARADRLLLQARLALDDAARLKVVRKMYALRFGEDAPERRSVDQLRGIEGSRVRETYRLLARTHGAEWDGRRYDPHEWDTANLVNRCLSAATAALYGITEAAILAAGYAPAIGFLHTGKPQSFVYDIADIVKFETVVPEAFRVAAAVQHERPLDGQRISDPVAAVRHRCRDQFRRTNILGRLIPLIEEILSAGGAEMPPAQDEAMPVAFKDAKGLGDAGHRG
>NC_010125.1|WP_012226053.1|2256483_2257170_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MMRGFLSRIALRRDAPVRALARLLVPDGEGRQHAAAHHLLWALFGDDPDRTRDFLWRQMEAGRFMVLSAREPVDSHGLFDVETRPFDPLLKEGDRLRFLLRANATVDRKTPGRTRSQRHDVVMDALHRRSQREGAEARDSMIADALETWMGRQGVRAGFAPASPLVIEGRDVLRIPRSGGRGIVSFGVVNLTGEVRVTAPDAFLDSLMQGFGRARAFGCGLMLIRRAV
>NC_010125.1|WP_012226054.1|2257166_2257949_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MGQFLTFAMVAPMASFGAIAVGERRDGWDRPARSAVLGLMAACLGLTRDDEDAQAALAADYGLAILCHAPGKLLTDYHTAQAAPARRNWRPATRAEELAASPGDLATILSRRDYRMGTWHLGAVWTSGKTARWSLEALQAAMREPVFTPSLGRRSCPAGLPLAPSVTDGVSAAAVLLDRHRNGPEAGLRIRHDSFRRQFAGASRSGGLLLVLDAVDMAEHGGGHTPLRREIRRDQPLSRRRWQFGLREEAVLLCREEGTI
>NC_010125.1|WP_012226055.1|2257957_2259016_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFLQLHLLTFYPPSNVNRDDTGNPKTANVGGVTRLRISSQALKRAWRTSEIFSSALAGHMGQRTQRLGNEIRQHLLEKGLDEKRSLAIARDIAGIYGKVKAEKDANSTYTEQLVFISPAEREAAFAMADRLAAGEKIDLAKEKDALLYRTDTAADIALFGRMLASEPSYNREAAVQVAHAITTHRVTVEDDYYTAIDDLKRPEEDAGAGFLSEAGFGSGVFYLYLCVNRELLRKNLGDADESGVMETALGALVEAAATVAPSGKQNSFAALARAQYVLAERGNAQPRTLAGAFARPVAGTDLMAGSIAALRTFRGELARVYGAGIDAECELETARKDSATLADIAAFCRS
>NC_010125.1|WP_012226056.1|2259012_2259603_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTGDDRNAIAEKARNWWRELQPDPGGRPGDRGTLARLRRCASIVDALFEPAVQTLARRCGARREGELARVALVAAVLAHVRSDNPAQFVARQIGPTDMAKVATALCKPVRFRRLLDASEFDECLTAFRRLVTLAGRTVNVADLARSVLAWPRTGMWDDMAAEKIRVRWVYEYWNAGEPDSGASAEQSIESEKELQS
>NC_010125.1|WP_012226057.1|2259599_2261255_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MRSFPMNLLTASWLPIRRKSGAAETIRPAQIVDRVADDPIMALDWPRADFRIASLEFLIGLLATAFPPKNEDIWCETWEDPPSVEALDEAFAPVAEAFWLDGPGPRFLQDLENLQSGQEPVERLLIDAPGDSTVKKNTDLFVHRQRIMALGRPAACMALFTLQSWAPSGGAGNMTGLRGGGPLVTLVLPREGASLWEMVWANTPFGVPPSEADLPRVFPWLAPTIGSGKDGTSVRPGHNAHPLQCWWGMPRRIRLDFEAAEDGICDLTGQPDAVLVPGWRQRPYGASYADWTGMPYGAGASIHPLTPRYRQKKDAEWLSVHPQPGGIGYRHWAGIVVNSSDTHRLPASTVLSWRNDRARNVAASLTPRLLAAGYDMDNMKARSFVESEMPLPGVVDPVRQEALDALARAYVEAADQVAGILRQCVREALFGKGTISPDATLFSGLRERFWAQTEGTFFDLLHQAVLLGDGDDIDLRRIWLRALRRVALDLFDSAVMLTPDTGTTEAQRSALARRRLGAAVAGGGKEGQALMMVLKIPVPVTRKATSRMKQP
>NC_010125.1|WP_041249776.1|2261621_2264315_-|CRISPR-associated-helicase/endonuclease-Cas3
MRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLGLLVALHDIGKLMPAFQAKVEICWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQNRNTLAPDTIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAIHRAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALPTMATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRALMAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELTNAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDEVIATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQRAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAGDADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPWAAKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIETGHEVVIGYDRTYGLEVVPA
>NC_010125.1|WP_012226059.1|2264359_2265691_-|glutamate--tRNA-ligase
MKLRFAPSPTGLIHVGNARQAIANALYARRHGGTFQLRIDDTDRERSRDEYVDALHTDLAWLGITWDETFRQSDRLDRYAAAIETLKASGRLYPCFESEQELASKREARIRMRKPPIYDRAMLRMTAEQRAQAEANGKVPYWRFRLSDQDRGVDDMVMGRSQVKLQSISDPVLVRADGTVLYTLASVVDDMETGVTHVLRGEDHLTNTGVQIDIAEALGGKVGQFAFAHLPLLLDEAGGKLSKRFDGLSIRALRQDGIDPVAIVSYLARLGSADDPAPLSFDDLAASYDVRRVSRSAARFDMRQLLALNRRVMHQMPFGAIRDRLPEGATEAFWMAVRGNVDMVSELRHWWDVVGGVIVPPVQDDEGAYLLQALALLPPEPWDAQTWKDWTTAVRDATGRSGKSVFHPLRVALTGEEEGPEMRDLLPLMGHDRVAERLRIAAR
>NC_010125.1|WP_012226060.1|2265755_2266157_-|hypothetical-protein
MTDTPPPFEPTEPTASETGWRVRILDLSGGAEEGIVEDIGGFLDLAHANAFARAYVRDSIERCRVAGAAPREVLQAWMSFGEDAEILDAGDDGWRSANELDDFTAHAATPMERDWRTIDPRRMVEDDEDETPE

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Crispr_ID: NC_010125_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010125_4

2441486-2441591

Orphan

Consensus_repeat	Method
AACTTCGCCGCATCCAGCGGTTCCTCCACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010125_4

>merge|NC_010125|4|2441486-2441591|CRISPRCasFinder
AACTTCGCCGCATCCAGCGGTTCCTCCACCACTGTCGGCCCCCTGTTCGCAGCAACGCGCCGATCCAGGCCTGGAACTTCGCCGCATCCAGCGGTTCCTCCACCAC

>NC_010125|4|4|2441486-2441591|CRISPRCasFinder
AACTTCGCCGCATCCAGCGGTTCCTCCACCAC	TGTCGGCCCCCTGTTCGCAGCAACGCGCCGATCCAGGCCTGG
AACTTCGCCGCATCCAGCGGTTCCTCCACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010125.1\|WP_012553243.1\|2445330_2445645_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|178203
NC_010125.1\|WP_012226323.1\|2449445_2450687_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_010125.1\|WP_012226282.1\|2426601_2427564_-\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NC_010125.1\|WP_012226311.1\|2444223_2445309_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_010125.1\|WP_012226284.1\|2427577_2428552_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NC_010125.1\|WP_041249789.1\|2446855_2448022_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224029
NC_010125.1\|WP_012226302.1\|2440178_2441177_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_010125.1\|WP_041249787.1\|2428787_2431040_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NC_010125.1\|WP_012226315.1\|2445632_2446859_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_010125.1\|WP_012553234.1\|2433302_2434979_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225307
NC_010125.1\|WP_012226290.1\|2431046_2433203_-\|catalase	unknown	unknown	gnl\|CDD\|236886
NC_010125.1\|WP_041249410.1\|2451064_2451421_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|226985
NC_010125.1\|WP_041249788.1\|2437276_2438647_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238506
NC_010125.1\|WP_012226321.1\|2448665_2449331_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NC_010125.1\|WP_012226325.1\|2450700_2451111_+\|DUF4186-domain-containing-protein	unknown	unknown	gnl\|CDD\|372733
NC_010125.1\|WP_041249409.1\|2443516_2444185_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198303
NC_010125.1\|WP_012226306.1\|2442399_2443509_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_010125.1\|WP_012226280.1\|2425631_2426576_-\|aspartyl-protease-family-protein	unknown	unknown	gnl\|CDD\|379313
NC_010125.1\|WP_012226296.1\|2436188_2437118_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NC_010125.1\|WP_041249407.1\|2438668_2440075_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848

Protein	Function_ID	Function_description	E-value
NC_010125.1\|WP_012553243.1\|2445330_2445645_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|178203	PLN02593, PLN02593, adrenodoxin-like ferredoxin protein.	2.75471e-45
NC_010125.1\|WP_012226323.1\|2449445_2450687_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_010125.1\|WP_012226282.1\|2426601_2427564_-\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	2.7899e-154
NC_010125.1\|WP_012226311.1\|2444223_2445309_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	2.2409e-180
NC_010125.1\|WP_012226284.1\|2427577_2428552_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	9.20492e-127
NC_010125.1\|WP_041249789.1\|2446855_2448022_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	6.57545e-115
NC_010125.1\|WP_012226302.1\|2440178_2441177_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	5.75731e-15
NC_010125.1\|WP_041249787.1\|2428787_2431040_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_010125.1\|WP_012226315.1\|2445632_2446859_-\|cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	1.67217e-159
NC_010125.1\|WP_012553234.1\|2433302_2434979_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|225307	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only].	0
NC_010125.1\|WP_012226290.1\|2431046_2433203_-\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NC_010125.1\|WP_041249410.1\|2451064_2451421_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	1.36333e-18
NC_010125.1\|WP_041249788.1\|2437276_2438647_+\|chloride-channel-protein	gnl\|CDD\|238506	cd01034, EriC_like, ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	4.53541e-160
NC_010125.1\|WP_012226321.1\|2448665_2449331_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	3.01996e-82
NC_010125.1\|WP_012226325.1\|2450700_2451111_+\|DUF4186-domain-containing-protein	gnl\|CDD\|372733	pfam13811, DUF4186, Domain of unknown function (DUF4186).	6.50202e-71
NC_010125.1\|WP_041249409.1\|2443516_2444185_-\|glutathione-S-transferase	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	5.74156e-47
NC_010125.1\|WP_012226306.1\|2442399_2443509_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.3693e-40
NC_010125.1\|WP_012226280.1\|2425631_2426576_-\|aspartyl-protease-family-protein	gnl\|CDD\|379313	pfam13650, Asp_protease_2, Aspartyl protease. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix.	4.70971e-09
NC_010125.1\|WP_012226296.1\|2436188_2437118_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	4.4361e-78
NC_010125.1\|WP_041249407.1\|2438668_2440075_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	1.67668e-77

>NC_010125.1|WP_012226302.1|2440178_2441177_-|hypothetical-protein
MIAGHVTGCVACRDSRKFGWATAEGDIVLGAREDFANAAVWQVQTVHDGAILSLAPNAAPAGFLTGGDDSTLRRIGADGAVTDLVRGRRWVEHVSSWADGKSGVIAFASGKQVELRDATGATTLKVLEHPSTVSGIVFDAKGKRIAASHYNGASLWFVHAKVDTPRRLEWKGSHTGIAIHPGGEALVTSMQENDLHGWRLSDGHNMRMSGYPHKVQSMAFSRTGKWLVTSGADSVVMWPFFGGGPMGKPPSELAGVPGVICRRVACHPVHEIVAAGFEDGTVLLEDAAAQRVLPVRGAGGGAISALAFTPDGCALAFGTEDGGIGIVDLAAR
>NC_010125.1|WP_041249407.1|2438668_2440075_-|cytochrome-P450
MEFIPPFPPRPKTSLSVFELLRRGTQNFLNIWEEKAFEYQTMSMQVLARQVFICNSPDTVRHAFITRAENFQRKSPQIRNALSPLLGDGLFVSDGETWKQRRQMVSPVLHTSRMDQFAPAMVETVGELADRWAALPDGATFDVLKVMAQLTAEIICRAVFGRTLGAEHAREVAEAFTEYQKYVDQSDLASFGLPSWVPRRNGAKTRRATARIHAVLDGIIADLQRTEDDGSVIRMLMRDGVLDATALRNEAAVIFLAGHETTANCLSWVWYLLSQAPEVEARLHEELDTVLGSRAPTFADVSQLVYTRAIVEETLRLYPPVPLLAREAKEDDTIRSRKVKAGALVMVVPWLLHRHRLYWRKPDHFMPERFLPGSPDAPQKYTYVPFSIGPRICPGLSFGLVEAIICLASLARGTTLRLAPGAVVEPVCRLTLRPGDTLPMTVWKRTAAAGTRPVPAAASAQRCPVHHG
>NC_010125.1|WP_041249788.1|2437276_2438647_+|chloride-channel-protein
MRHLRRSARVTTAQWRRKIVYWAAAIVVGLVAVGFATAADAAAALRTRLVHWDPWIMLAITPAGLALSTWLTRTWFRGAQGSGIPQTIATLHLDDFAVVDRLLSLRIAFGKILLTTLGLLAGASIGREGPTVQVGAAIMHAFGRWLNLSAVGMRRGLILAGGASGVSAAFNTPLGGIVFAIEELSHSFEQRTSGTMLTGVILSGVTAIALVGNYTYFGHTDVVVPIGISWIAVLACGILGGVSGGAFSAILIRSSAGLPGVLGQFVSRRPVAFAAACGLVLAVLGVASGGITYGTGYLQAREIITGQTHYPASFFILKYIATIVSYCSGIPGGLFAPSLAIGAGIGGWIAQFLPHTTPGAVVLLGTVAYFSAVVQAPLTATVIVMEMSDNQQVTLALLATSFLAYAVSRTVCSQSLYSALAEKFLDVVEHAPPPAEETAAPPRAAIVPGPTAPERF
>NC_010125.1|WP_012226296.1|2436188_2437118_+|cation-transporter
MPHISKNALAWTSLGVSLVALSLKYAAWRVTGSIALYSDAIETIINVVAALAGLWALRVASLPPDENHTYGHYKAEYLSAVAEGVLVLMTALAIGREAWIDWQHPVLPHAPLSGIALNGSAGVLNLAWAIVLLQSGRARRSPTLIAAGQHVMSDVWTTVGLVAGFVLIPLTGQAWLDAALAALIAVNVLRVGWEMMRRSIAGLMDEAPDADTLADIRHVIASNATGAIEAHDLRARIVGAMAFVEFHLVVPGAMSVDAAHEICDRIEAALRAEIGQALIHIHVEPERKAKHEGIAVPPAPAPRAILPSS
>NC_010125.1|WP_012553234.1|2433302_2434979_-|FAD-dependent-oxidoreductase
MIRLTEIRLPLDHHPDALAAEIIRRLGIPAEDLLDHAVFRRGYDARRRGAIVLVYTVDCTLRDEEGVLARLAGDRHVGVAPDTTYRVPVEDGARLAAAATYRRPIVIGAGPCGLLAGLLLAQMGLRPLMLERGKSVRERTVDTFALWRRSVLTPESNVQFGEGGAGTFSDGKLYSQVSDPRHYGRKVLTEFVRAGAPKEILYLSKPHIGTFRLVSMVEHIRAEIEALGGEYRFGARVEDILLAPGARRVSGVSLAGGEVVQADHVVLAVGHSARDTFAMLHGRDVAMEAKPFSIGVRIEHPQSVIDAARFGTHAGNPLLGAADYRLVHHASNGRAVYSFCMCPGGTVVAATSEEGRVVTNGMSQYSRAERNANAGIVVGVTPDPDYPDGPLAGIAFQRHWERQAYLAGGGGYRAPAQRVGDFLAGRPSTHLGAVEPSYRPGVTPTDLAACLPDFAVQAMREALADFGRQLAGFDMEDAVMTGVETRTSSPLRIPRGPDGQSVNTAGLYPAGEGAGYAGGILSAAIDGIRVAEAVALDLAGRPVDGLIRQTMTRSAPAQ
>NC_010125.1|WP_012226290.1|2431046_2433203_-|catalase
MSVKSPGTKSPGAKSPGPGRKTATLGTETIQRGAGGETHQVAGGDVPVLTTQQGIPVADDQNSARIGARGPTLLEDFHFREKIFHFDHERIPERVVHARGYGAHGFFELTESLADVTRADVLQRPGERVPAFVRFSTVAGSKGSSDLARDVRGFAVKLYTHEGNWDIVGNNIPVFFIQDAIKFPDVIHSVKPEPDRDFPQAQSAHDNFWDFVSLSPESIHMALWVMSDRAIPRSLRFMEGFGVHSFRFVNKAGKSTYVKFHWKPKQGLQSVVWNEALKINGADPDFHRRDLWNAIQSGDFPEWELGVQLFDDDFADSFDFDVLDPTKLIPEELVPVRRIGRLVLDRVVDNFFAETEQVAFCTQNIVPGVDFTNDPLLQGRNFSYLDTQLKRLGGPNFTHIPINAPKCPFHNFQQDGHMAMHNPKGRANYEPNSWGGAQGGPREDPARGFTSFPAREAGEKLRERSELFGDHYSQARQFYLSQTETERVHIQQAFTFELSKVETPPIRARVVSHLVNVDIDLATAVAQGLGLEDLPEAAPPARPLVDGLAPSPALSILRNGPDSFKGRKIGILVTDGVDAGLLKAVTDAARAEGTNVELVAPKVGGVTLHDGTLVPAGQKINGGPSVLYDAVVLLPSADGATLLMQEATARDFIADAYAHAKFIGYAEAALPLMERAGVRPADMDDGILKLSTPADATAFIAACRALRFWEREANVHAV
>NC_010125.1|WP_041249787.1|2428787_2431040_+|primosomal-protein-N'
MRVGPPAAGLLKQPPTGRPRVAVLLPLPFPGPFDYAAPPDLPAPPLQPGDIVTVPLGRRTETGVVWDPERNLPPEFTPPPMKSVADGRLKPVIARLDQPPLPASLRRFVDWVAAYTLSPPGLVLAMALRTGTAAQAAPALGWAVADPPPGLRDTPARRRVLDIAAHDGPLTAAELARRAGVGTSVVRGLADAGALRGVTMTPRPAFVRPDPDHCPPALDGEQAESARALRALAAEGGFSVTLLEGVTGSGKTEIYMEAIAACLARGKQVMVLLPEIALSSQWTGRFARRFGAEPALWHSDLGPRLRRVTWHAVADGTARVVVGARSALFLPFAELGLIIVDEEHETAFKQEDGVTYHARDMAVVRARMDRAPVVLVSATPSLETLANVGAGRYRHLVLTARHGGATMPEVRTIDMRAHPPERGLFLSPVLTEAIRQAIGRGEQGMLFLNRRGYAPLTLCRTCGHRLQCPNCTAWLVEHRARQILTCHHCGYQEATPPACPECHAESSLTPIGPGVERITEEARATFPDARILVMASDTLPGPAATADAVARIARREIDLVIGTQIVAKGWHFPHLTLVGVVDADLGLGGGDLRAAERTVQLLHQVAGRAGRAEAPGTVLLQSYTPDHPVMLALVSGDFESFMRQEAEQRRPGFWPPFGRLAALIVSADTPEAADATARALGQAAPRGDSLQVLGPAPAPLAILRGRHRRRLLLRTRREVAVQPLLRQWLDRVTPERGARIDIDIDPVSFL
>NC_010125.1|WP_012226284.1|2427577_2428552_-|tyrosine-recombinase-XerC
MTGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRLQPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLMEVWTRAHPRAARPAE
>NC_010125.1|WP_012226282.1|2426601_2427564_-|prolyl-aminopeptidase
MTTSPACTLYPPIEPYRSGHLETGDGHQVYWELCGNPDGIPVVFLHGGPGAGCAPTHRRLFDPARYRILLFDQRGCGRSRPHAALENNTTWHLVEDIERLREMTGATRWLVFGGSWGSTLALAYAQAHPDRVTGLVLRGIFTLRRAELLWYYQEGASWLFPDKWERFLAPIPPAERDDLMAAYRRRLTHADPAIRGEAAVAWSLWEGETLTLRPAPDLAAQHADPEYALAFARIENHYFVHGGWLDEGQLIRDVGRIRHIPAVIVQGRYDVATPVRTAWDLHRAWPEAEFHLIDDAGHAVAEPGILNALLDATDRFASLG
>NC_010125.1|WP_012226280.1|2425631_2426576_-|aspartyl-protease-family-protein
MGTLAILALLAMPAHAEPAPGQDDAPPCALTRIARVPLRDDGGYLSVPVSITGSQGRAAFSLLVDTGAEGGLISSGVVSALHLAIDPDRRTVLQGTGGIAGVVPNAMVPDLRLGAPGQEGLDLGPLSIPVGDLPGQPVIQPPVAGLLGADVLAGFDVEFDVAGGWLTFWRPQSDTACQPVPVWHGVYQTVPLQRAGHRVSVAAELDTRDLTALVDSGARSRILSTDAAQRMGLSADRLAADPGGETSGVDGRPVPYHWHRFTSLRIGREDERAPVLTVAPLRDQVDMLLGADWFAGHDVWISYATSRMFVRPAR
>NC_010125.1|WP_012226306.1|2442399_2443509_-|glycosyltransferase-family-4-protein
MAPVVTVLPPRERFAPGQAGAISLLVRRLADVGDVVVGTAVAAPFDGVTFRPAVPGLWPPAWIAGGAGRYAAAVARIVRAVRPALVEIHNRPDVAWALARRFPRLPMMLVLHNDPQAMRGATSPVLRAAILRRMRVVAVSGWVRGRFVAGLPTGAGVDVVPNCIDLAGLPPALPPAGRDRTILFAGRVVADKGADAFVAACGAVLPDLPGWRARMIGADRFGPDSPDTPFLEALRPLARAAGVDMAGYRPHDRVLAEMARAAIVVVPSRWPEPFGLTALEAMACGAALVASPRGGLPDLVGDAALLVPPDPETGLADAIRDLARSADRRADLSARGRARARLFDCAAARTTLRGLRRAGIAAGGAGPGA
>NC_010125.1|WP_041249409.1|2443516_2444185_-|glutathione-S-transferase
MADGRLIIGTRRYSSWSLRGWLVVHLAGLDVEEVLIPIAGGGGTAGIKVVSPNGLVPYLEHRGARVWESLAIGEYCAEIAPALWPADRVARAHARSIASEMHAGFRPLRMAMPMNLGRQARPLAAPLADDVLGDIARIDAILSETRATFGAGGPYLFGAGLTVADAMYAPVIARFLSYGVTLSPVAAEYAAALRAHPLVVRWYDEAAREPAAWQLDRYESIS
>NC_010125.1|WP_012226311.1|2444223_2445309_-|tRNA-2-thiouridine(34)-synthase-MnmA
MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRESARKGACCAGRDIHDARRVADRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGIARDLGAEAMATGHYVRRIEGPDGAELHRPVDEGRDQSWFLFATTRQQLEFLRFPLGDMPDKAAVRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGVTRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWLIDPPEGDLRCLVQIRAREAARPATVRRTADGASVTLDEAAMPAPGQACVLYDGSRVLGGGFIRRREMAGAAA
>NC_010125.1|WP_012553243.1|2445330_2445645_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MPHMIFIESDGTRREVDAPVGLSVLEIAHKHGVDLEGACEGSLACATCHVVVDPDWAPKLAAPTEDEEDMLDLAFGLEKTSRLGCQIVMTEALDGLVVRLPHKA
>NC_010125.1|WP_012226315.1|2445632_2446859_-|cysteine-desulfurase
MTDGRELYLDYQATTPCDPAVVAAMMPWFAESFGNPHSADHALGRRAWDAGEQARAEVGALLGADAREIVFTSGATEVNNIAIKGAVRHLAARGDARRRVTTVATEHKCVLESVRDLAAEGFDPVVLPVAPDGRLDPGTLRAALAVPTLLVSIMAANNETGVLHDMAALAPIVRAAGALLHSDVAQAAGKVALDVRAMDLDLASVSAHKLYGPKGVGALYVRRRPRVRLAPLFSGGGQERGLRSGTLPTPLLVGFGAACRIARTVRVEEARRMAALRDGFLERMEEGVPGIVVNGSMAHRLPANLNLRFPDVRALDVIAHAPELCVSTGSACSSAELVPSYVLTAMGLRAEDAARSLRLAVGRYTSAADMDRAAAILCRAVADARRAERGAAARAAHDDTARTAECRI
>NC_010125.1|WP_041249789.1|2446855_2448022_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MDRDFFYFDANASEPARPAALDAMARAAAITGNPSSVHRAGRQARAILESARERLAALFGARADNCVLTSGGTEANLLAIAGLGGGRRILASAVEHDAVRAAVPAGADLIPVDGQGVARLEVLEQWLVEADGPPPLVCLMLANNEVGTIQPVAEAVRICHAHGALLHVDAVQAAGRIPIDLGALGCRQQAVSGHKFGGVKGAGALLLAGEATRALPPMMAGGGQEHGRRGGTPALPAIAAMAEAAGDAVAALAGGGDGRADPTTLARWRDAIDAAARAAGAVVCGGDAPRLPNTTSLALPGRAAQIQLIALDLAGFGVSAGSACSSGKVARSHVLQAMGHGSLAGEAIRVSLPWTVREDDVTRFIAAWRAMAARLPARARSERTEVHV
>NC_010125.1|WP_012226321.1|2448665_2449331_+|alpha/beta-hydrolase
MPEVMFAGPDGRLEGRYHHSSEPNAPLALVLHPHPLHGGTMNNRITYAMYRSFEKMGFSVMRYNSRGVGRSQGRYDGGIGEISDAAAALDWMQMVNPNAGGLWIAGYSFGAFVGMQLLMRRPEITGWISVAPPANHYDFGFLAPCPCGGLMIAGEADELVPEPAVRKLVDKLNTQKGVAVDYRIFAGADHVFAHHSDQVAEALEDHVGTIMARGALALAAD
>NC_010125.1|WP_012226323.1|2449445_2450687_+|tyrosine--tRNA-ligase
MPKSEFLQEAEARGFIFQCTDIDALDAALQAGPVAGYIGFDPTADSLHVGSLIQIMMLRLMQKHGHRPVALMGGGTAKIGDPSFREEARQLMTDETIAANLRGIEGCLRQFLQFDGAAGARLANNADWLDRLSYIDLLRDVGVHFSVNRMLAFDSVRSRLEREQGLTFLEFNYSILQSYDFRELSRTQGVTLQMGGSDQWGNIVSGIDLVRRTDQKQVFGLTTPLLTTASGAKMGKSARGAIWLSASRLPIFEYWQFWRNVDDADVGRFLRLFTDLPIAECDRLAALGGTEINEAKKVLATEATALCHGRAEADAAAEAARRTFEDGAAPAALPGTTIAADLLAAGIPAFRLFVESGMAASNGEARRLIRGGGARINDVAVQDEGQVITTTDLADGAIKLSSGRKHHILVRPA
>NC_010125.1|WP_012226325.1|2450700_2451111_+|DUF4186-domain-containing-protein
MAAAAGPDDAAHPPAPPPPVPDALWQRLARSAFRARFHLDPKDRAYLTDKGMATVMTHAADFIARRLAPARPARDGRQTPWRGHPVFVAQHATATCCRGCLEKWHGLARGRELDAPERAYVLTVIRTWLDREQASG
>NC_010125.1|WP_041249410.1|2451064_2451421_-|Rieske-2Fe-2S-domain-containing-protein
MNIEPTRLCVMDDIRDGPRRVVVEGEGLVVWMAADGQPRVFADRCPHRDARLSAGHVENGRLLCPFHLWAFDESGLYVGPDGVADPTCAVPGVPADVRDGAVWISRLPVRDPARCESP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	169357-169387	2	0.935
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NZ_CP043508	Acetobacter sp. KACC 21233 plasmid unnamed2, complete sequence	1178-1208	2	0.935
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	354029-354058	5	0.833
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NC_020205	Xanthomonas citri phage CP2 DNA, complete genome	13244-13275	5	0.844
NC_010125_1	1.27\|64701\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64701-64734	34	NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	25423-25456	6	0.824
NC_010125_2	2.7\|2181914\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181914-2181943	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	11926-11955	6	0.8
NC_010125_2	2.8\|2181980\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181980-2182009	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	1182-1211	6	0.8
NC_010125_2	2.8\|2181980\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181980-2182009	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	830557-830586	6	0.8
NC_010125_2	2.8\|2181980\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181980-2182009	30	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	1045219-1045248	6	0.8
NC_010125_2	2.8\|2181980\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181980-2182009	30	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1911716-1911745	6	0.8
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP015745	Shinella sp. HZN7 plasmid pShin-09, complete sequence	48363-48392	6	0.8
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834624	Arthrobacter phage Polka, complete genome	17008-17037	6	0.8
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	CP003950	Rhodococcus opacus PD630 plasmid 1, complete sequence	484-513	6	0.8
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MN234219	Mycobacterium phage Mercurio, complete genome	23356-23385	6	0.8
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MN234185	Mycobacterium phage Lemuria, complete genome	22746-22775	6	0.8
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	478431-478460	6	0.8
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1781752-1781781	6	0.8
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1845553-1845582	6	0.8
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	KR997932	Mycobacterium phage Godines, complete genome	47539-47568	6	0.8
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	KX443696	Mycobacterium phage Laurie, complete genome	46956-46985	6	0.8
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	50643-50674	6	0.812
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP048424	Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence	249312-249341	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	73160-73189	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	71193-71222	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	100843-100872	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	73189-73218	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	100843-100872	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	73756-73785	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	73756-73785	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	100853-100882	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	100872-100901	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	100843-100872	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	73172-73201	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	73172-73201	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	73170-73199	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	135606-135635	7	0.767
NC_010125_2	2.3\|2181650\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181650-2181679	30	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	3132-3161	7	0.767
NC_010125_2	2.4\|2181716\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181716-2181745	30	NZ_CP029211	Aquabacterium olei strain NBRC 110486 plasmid pTB101, complete sequence	39184-39213	7	0.767
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	596107-596136	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MT952853	Arthrobacter phage Orcanus, complete genome	18122-18151	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	604946-604975	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP022418	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3, complete sequence	192390-192419	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	430104-430133	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834620	Arthrobacter phage Melons, complete genome	17162-17191	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834618	Arthrobacter phage Lunar, complete genome	17162-17191	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834608	Arthrobacter phage Cote, complete genome	17162-17191	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834616	Arthrobacter phage Kepler, complete genome	17000-17029	7	0.767
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834609	Arthrobacter phage Daob, complete genome	17167-17196	7	0.767
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5853038-5853067	7	0.767
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	37716-37747	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	341850-341881	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP014142	Thermus parvatiensis strain RL plasmid pTP143, complete sequence	70726-70757	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	1822-1853	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	161988-162019	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_017588	Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence	156814-156845	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	338133-338164	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	188454-188485	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	242856-242887	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	217868-217899	7	0.781
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	1023676-1023707	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	54065-54096	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP029453	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence	365224-365255	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	469549-469580	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	731192-731223	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1026042-1026073	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	404468-404499	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP023069	Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence	374013-374044	7	0.781
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP029233	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence	381730-381761	7	0.781
NC_010125_3	3.14\|2254568\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254568-2254599	32	KY092484	Streptomyces phage Raleigh, complete genome	4577-4608	7	0.781
NC_010125_3	3.14\|2254568\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254568-2254599	32	JX182371	Streptomyces phage SV1, complete genome	4424-4455	7	0.781
NC_010125_3	3.15\|2254629\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254629-2254660	32	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	879055-879086	7	0.781
NC_010125_3	3.18\|2254812\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254812-2254843	32	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	123598-123629	7	0.781
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	MN871440	UNVERIFIED: Aeromonas phage AsFcp_1, complete genome	89142-89173	7	0.781
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	AY266303	Bacteriophage Aeh1, complete genome	181935-181966	7	0.781
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NC_023688	Aeromonas phage PX29, complete genome	169349-169380	7	0.781
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NC_005260	Aeromonas phage Aeh1, complete genome	181935-181966	7	0.781
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	MH791407	UNVERIFIED: Aeromonas phage AsFcp_4, partial genome	74572-74603	7	0.781
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	MH791401	UNVERIFIED: Aeromonas phage AsFcp_2, complete genome	119737-119768	7	0.781
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5637256-5637287	7	0.781
NC_010125_1	1.17\|64032\|35\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64032-64066	35	NZ_CP020447	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed7, complete sequence	68572-68606	8	0.771
NC_010125_1	1.17\|64032\|35\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64032-64066	35	NC_020489	Rhodobacter phage RcapNL, complete genome	38694-38728	8	0.771
NC_010125_1	1.17\|64032\|35\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64032-64066	35	JF974309	Rhodobacter phage RcNL1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	48845-48879	8	0.771
NC_010125_1	1.22\|64370\|33\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64370-64402	33	NZ_CP045327	Mycobacterium sp. THAF192 plasmid pTHAF192_b, complete sequence	34801-34833	8	0.758
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MT498048	Mycobacterium phage Raymond7, complete genome	36699-36732	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MK524522	Mycobacterium phage Purgamenstris, complete genome	36911-36944	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MT684588	Mycobacterium phage Snekmaggedon, complete genome	35202-35235	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MT498042	Mycobacterium phage Rebel, complete genome	34096-34129	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MT498044	Mycobacterium phage Jamie19, complete genome	35202-35235	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	KX756439	Mycobacterium phage PhancyPhin, complete genome	36907-36940	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MK392367	Mycobacterium phage BabeRuth, complete genome	36911-36944	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MK524520	Mycobacterium phage Nenae, complete genome	36913-36946	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	JN624851	Mycobacterium phage Redi, complete genome	36910-36943	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MK524509	Mycobacterium phage SpongeBob, complete genome	35202-35235	8	0.765
NC_010125_1	1.26\|64635\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64635-64668	34	MK524528	Mycobacterium phage ShrimpFriedEgg, complete genome	36910-36943	8	0.765
NC_010125_1	1.27\|64701\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64701-64734	34	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	433591-433624	8	0.765
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1440101-1440130	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1190923-1190952	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1440248-1440277	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1190898-1190927	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	936408-936437	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	906569-906598	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1190930-1190959	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1439823-1439852	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1439767-1439796	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1117850-1117879	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	282852-282881	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	927383-927412	8	0.733
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1064445-1064474	8	0.733
NC_010125_2	2.8\|2181980\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181980-2182009	30	NZ_CP025433	Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence	8514-8543	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1144830-1144859	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	819232-819261	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	636678-636707	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1144957-1144986	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	873799-873828	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	861264-861293	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MH834606	Arthrobacter phage Coral, complete genome	17001-17030	8	0.733
NC_010125_2	2.9\|2182046\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182046-2182075	30	MN234214	Arthrobacter phage Amelia, complete genome	17162-17191	8	0.733
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	NZ_CP009123	Sphingopyxis fribergensis strain Kp5.2 plasmid pSfKp5.2, complete sequence	1558-1587	8	0.733
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	1091498-1091527	8	0.733
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	116726-116757	8	0.75
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	MN693269	Marine virus AFVG_25M487, complete genome	43062-43093	8	0.75
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	193166-193196	8	0.742
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	131425-131455	8	0.742
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	211889-211919	8	0.742
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	55455-55485	8	0.742
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NZ_CP050140	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence	3473-3503	8	0.742
NC_010125_3	3.3\|2253897\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2253897-2253928	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	333044-333075	8	0.75
NC_010125_3	3.8\|2254202\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254202-2254233	32	NC_029005	Streptomyces phage phiSAJS1, complete genome	2890-2921	8	0.75
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1674287-1674318	8	0.75
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	138974-139005	8	0.75
NC_010125_3	3.10\|2254324\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254324-2254355	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1024594-1024625	8	0.75
NC_010125_3	3.10\|2254324\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254324-2254355	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1049996-1050027	8	0.75
NC_010125_3	3.10\|2254324\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254324-2254355	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1082379-1082410	8	0.75
NC_010125_3	3.12\|2254446\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254446-2254477	32	MK937607	Gordonia phage Zipp, complete genome	13695-13726	8	0.75
NC_010125_3	3.12\|2254446\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254446-2254477	32	MK937611	Gordonia phage Verity, complete genome	13550-13581	8	0.75
NC_010125_3	3.13\|2254507\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254507-2254538	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3789174-3789205	8	0.75
NC_010125_3	3.14\|2254568\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254568-2254599	32	MH825699	Streptomyces phage Darolandstone, complete genome	4611-4642	8	0.75
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	85325-85356	8	0.75
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1785257-1785288	8	0.75
NC_010125_3	3.18\|2254812\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254812-2254843	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	766507-766538	8	0.75
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1605384-1605415	8	0.75
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP033873	Caulobacter sp. FWC26 plasmid p1, complete sequence	294069-294100	8	0.75
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1605382-1605413	8	0.75
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	833261-833292	8	0.75
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1511865-1511896	8	0.75
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1455806-1455837	8	0.75
NC_010125_1	1.1\|62967\|34\|NC_010125\|CRISPRCasFinder,CRT	62967-63000	34	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	684607-684640	9	0.735
NC_010125_1	1.2\|63033\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	63033-63066	34	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	25443-25476	9	0.735
NC_010125_1	1.2\|63033\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	63033-63066	34	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	72016-72049	9	0.735
NC_010125_1	1.22\|64370\|33\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64370-64402	33	NZ_KY000063	Agrobacterium fabrum strain CFBP6549 plasmid pTi_CFBP6549, complete sequence	53370-53402	9	0.727
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NC_010865	Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence	156769-156798	9	0.7
NC_010125_2	2.6\|2181848\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181848-2181877	30	NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	46514-46543	9	0.7
NC_010125_2	2.8\|2181980\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2181980-2182009	30	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	25635-25664	9	0.7
NC_010125_2	2.10\|2182112\|30\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2182112-2182141	30	KP087946	Eel River basin pequenovirus isolate c15437, complete genome	3245-3274	9	0.7
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	MT658803	Mycobacterium phage Reindeer, complete genome	44865-44896	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	12000-12031	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP045330	Labrenzia sp. THAF191b plasmid pTHAF191b_b, complete sequence	5414-5445	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP045346	Labrenzia sp. THAF187b plasmid pTHAF187b_b, complete sequence	5414-5445	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP045334	Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence	77956-77987	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP045382	Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence	57705-57736	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP045382	Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence	134036-134067	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	597330-597361	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	351664-351695	9	0.719
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	8069-8100	9	0.719
NC_010125_3	3.2\|2253837\|31\|NC_010125\|CRISPRCasFinder,CRT	2253837-2253867	31	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	340882-340912	9	0.71
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	305707-305738	9	0.719
NC_010125_3	3.10\|2254324\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254324-2254355	32	NZ_LR594664	Variovorax sp. RA8 plasmid 3	370076-370107	9	0.719
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	106255-106286	9	0.719
NC_010125_3	3.15\|2254629\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254629-2254660	32	NC_013545	Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence	118701-118732	9	0.719
NC_010125_3	3.15\|2254629\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254629-2254660	32	NZ_CP021796	Sinorhizobium meliloti strain USDA1157 plasmid accessoryA, complete sequence	57413-57444	9	0.719
NC_010125_3	3.15\|2254629\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254629-2254660	32	NZ_CP021215	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence	47628-47659	9	0.719
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	56462-56493	9	0.719
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	170433-170464	9	0.719
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	10106-10137	9	0.719
NC_010125_3	3.17\|2254751\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254751-2254782	32	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	411242-411273	9	0.719
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NC_007763	Rhizobium etli CFN 42 plasmid p42b, complete sequence	89415-89446	9	0.719
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NZ_CP020907	Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence	88538-88569	9	0.719
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NC_021906	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence	87448-87479	9	0.719
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	36115-36146	9	0.719
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	KX669658	Ochrobactrum phage POA1180, complete genome	35930-35961	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	172110-172141	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	182671-182702	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013525	Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence	171328-171359	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013554	Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence	184819-184850	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013588	Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence	166648-166679	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	173821-173852	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	171540-171571	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	171910-171941	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	177713-177744	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	171910-171941	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	175984-176015	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	171904-171935	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013565	Rhizobium phaseoli strain N831 plasmid pRphaN831b, complete sequence	184819-184850	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	177713-177744	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	171540-171571	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NC_010998	Rhizobium etli CIAT 652 plasmid pA, complete sequence	177492-177523	9	0.719
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP045361	Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence	118304-118335	9	0.719
NC_010125_1	1.27\|64701\|34\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64701-64734	34	NZ_CP015368	Methylobacterium phyllosphaerae strain CBMB27 plasmid CBMB27-p1, complete sequence	41002-41035	10	0.706
NC_010125_3	3.1\|2253776\|32\|NC_010125\|CRISPRCasFinder,CRT	2253776-2253807	32	NZ_CP045120	Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence	138401-138432	10	0.688
NC_010125_3	3.9\|2254263\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254263-2254294	32	NZ_CP046906	Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence	77500-77531	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MK016499	Mycobacterium phage Mangethe, complete genome	43411-43442	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MK919480	Mycobacterium phage Techage, complete genome	42968-42999	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MT024866	Mycobacterium phage Willsammy, complete genome	44173-44204	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MN892486	Mycobacterium phage KilKor, complete genome	44689-44720	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MN908683	Mycobacterium phage StressBall, complete genome	43689-43720	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MK524508	Mycobacterium phage Zilizebeth, complete genome	43733-43764	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MN892484	Mycobacterium phage CactusJack, complete genome	43996-44027	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MF140399	Mycobacterium phage Bartholomew, complete genome	41376-41407	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MN807249	Mycobacterium phage Megiddo, complete genome	44557-44588	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	NC_023552	Mycobacterium phage Donovan, complete genome	42958-42989	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	KC691256	Mycobacterium phage Fishburne, complete genome	42784-42815	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MN807250	Mycobacterium phage Glaske, complete genome	43996-44027	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MF472894	Mycobacterium phage Majeke, complete genome	43411-43442	10	0.688
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	MN807248	Mycobacterium phage Phalm, complete genome	43987-44018	10	0.688
NC_010125_3	3.13\|2254507\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254507-2254538	32	NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	26378-26409	10	0.688
NC_010125_3	3.13\|2254507\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254507-2254538	32	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	166210-166241	10	0.688
NC_010125_3	3.19\|2254873\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254873-2254904	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	114043-114074	10	0.688
NC_010125_1	1.29\|64833\|35\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	64833-64867	35	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	845042-845076	11	0.686
NC_010125_3	3.11\|2254385\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2254385-2254416	32	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	148240-148271	11	0.656
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	350105-350136	11	0.656
NC_010125_3	3.22\|2255056\|32\|NC_010125\|CRISPRCasFinder,CRT,PILER-CR	2255056-2255087	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	331633-331664	11	0.656

1. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 2, identity: 0.935

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttcccctgctcggcaacccgaaactcaagat	Protospacer
*.***************** ***********

2. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP043508 (Acetobacter sp. KACC 21233 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
tccccctgctgggcaatcccaaactcaagat	Protospacer
********** *****.**************

3. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 5, identity: 0.833

atcgagcgccggccggacgtcgttgtcgcc-	CRISPR spacer
atcgagcgcctgccggacgtcttcg-cgcga	Protospacer
********** ********** *.* ***

4. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_020205 (Xanthomonas citri phage CP2 DNA, complete genome) position: , mismatch: 5, identity: 0.844

-acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
tacgtgc-cgcgcgtggtgtccacgttcctgcg	Protospacer
 **** * ******** **************

5. spacer 1.27|64701|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.824

cttctgttcggcatcgccggcgcgtctggttccg-	CRISPR spacer
ctgctgttcggcatcaccggcgcg-ctggtcgtga	Protospacer
** ************.******** *****. .*

6. spacer 2.7|2181914|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 6, identity: 0.8

gagcggaggcagcttgtggcccaatatggc	CRISPR spacer
gagcggcgacagcttgtggcccaagcggtc	Protospacer
****** *.***************   * *

7. spacer 2.8|2181980|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gatcgcgcatgatggccggatcaacgctca	CRISPR spacer
gatcgcgcatgagggccggatcgacttcga	Protospacer
************ *********.** .. *

8. spacer 2.8|2181980|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.8

gatcgcgcatgatggccggatcaacgctca	CRISPR spacer
gatcgcgcatgagggccggatcgacttcga	Protospacer
************ *********.** .. *

9. spacer 2.8|2181980|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.8

gatcgcgcatgatggccggatcaacgctca	CRISPR spacer
gctgccgcatgatggccggatcaaggccga	Protospacer
* *  ******************* **. *

10. spacer 2.8|2181980|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.8

gatcgcgcatgatggccggatcaacgctca	CRISPR spacer
gctgccgcatgatggccggatcaaggccta	Protospacer
* *  ******************* **..*

11. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015745 (Shinella sp. HZN7 plasmid pShin-09, complete sequence) position: , mismatch: 6, identity: 0.8

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atgctacggcggccggacgtcattgtcgcc	Protospacer
**   .** ************.********

12. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834624 (Arthrobacter phage Polka, complete genome) position: , mismatch: 6, identity: 0.8

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtcgcgggcccg	Protospacer
****** ***************. * * *

13. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to CP003950 (Rhodococcus opacus PD630 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.8

atcgagc---gccggccggacgtcgttgtcgcc	CRISPR spacer
---gaactcggccggctggacgtagttgtcgcc	Protospacer
   **.*   ******.****** *********

14. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN234219 (Mycobacterium phage Mercurio, complete genome) position: , mismatch: 6, identity: 0.8

atcgagcgccggccggacgtcgttgtcgcc-	CRISPR spacer
atcgcgcgccggccggacgccg-tgccgttc	Protospacer
**** **************.** **.**..

15. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN234185 (Mycobacterium phage Lemuria, complete genome) position: , mismatch: 6, identity: 0.8

atcgagcgccggccggacgtcgttgtcgcc-	CRISPR spacer
atcgcgcgccggccggacgccg-tgccgttc	Protospacer
**** **************.** **.**..

16. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 6, identity: 0.8

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagcgtcggccgggcgtcgtctatgcc	Protospacer
********.*******.******.  .***

17. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.8

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
cttcacgccgagcttgctcgacgcgttctc	Protospacer
* * ..*.************.*********

18. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.8

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
cttcacgccgagcttgctcgacgcgttctc	Protospacer
* * ..*.************.*********

19. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KR997932 (Mycobacterium phage Godines, complete genome) position: , mismatch: 6, identity: 0.8

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
gatgttgtcgcgcttgctcggcgcggtgtt	Protospacer
 *** ***** ************** * *.

20. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KX443696 (Mycobacterium phage Laurie, complete genome) position: , mismatch: 6, identity: 0.8

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
gatgttgtcgcgcttgctcggcgcggtgtg	Protospacer
 *** ***** ************** * *

21. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 6, identity: 0.812

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
acctcgacctcgtccaggatcaccagcccctc	Protospacer
*   **.******************* ****

22. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
gcgaagccagcgctggacgacatggtcatt	Protospacer
 ***** * ****************  *

23. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

24. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

25. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

26. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

27. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

28. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

29. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

30. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

31. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

32. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

33. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

34. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

35. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ttcatgagcgcgatggacgacatggggacc	Protospacer
*. * ** **** ***************

36. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
gcaagggtggcgctggacgacatgggcaag	Protospacer
 *.*.*.. ***************** ***

37. spacer 2.3|2181650|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.767

tcgaagaccgcgctggacgacatggggaag	CRISPR spacer
ctgaaggccgcgctggacgagatggaggcg	Protospacer
..****.************* ****.*. *

38. spacer 2.4|2181716|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029211 (Aquabacterium olei strain NBRC 110486 plasmid pTB101, complete sequence) position: , mismatch: 7, identity: 0.767

cgattccgataccttgcgcgtgcgcactgg	CRISPR spacer
ggcctccgatgccatgcgcgtgcgcaccag	Protospacer
 * .******.** *************..*

39. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 7, identity: 0.767

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtattcgatatcggaaacgacggtctg	Protospacer
*. *  *******.*** ***********

40. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MT952853 (Arthrobacter phage Orcanus, complete genome) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtcgcggggccg	Protospacer
****** ***************. *   *

41. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cacgagcaccggccggacgtcgtactccac	Protospacer
  *****.***************  **  *

42. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022418 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3, complete sequence) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
ccagaatgcccgccggacgtcgttgacgcc	Protospacer
 . **..*** ************** ****

43. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
gtccggcgccggccggaagccgttgtcggg	Protospacer
.** .************ *.********

44. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834620 (Arthrobacter phage Melons, complete genome) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggcccg	Protospacer
****** ************** . * * *

45. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834618 (Arthrobacter phage Lunar, complete genome) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggcccg	Protospacer
****** ************** . * * *

46. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834608 (Arthrobacter phage Cote, complete genome) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggcccg	Protospacer
****** ************** . * * *

47. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834616 (Arthrobacter phage Kepler, complete genome) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggcccg	Protospacer
****** ************** . * * *

48. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834609 (Arthrobacter phage Daob, complete genome) position: , mismatch: 7, identity: 0.767

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggcccg	Protospacer
****** ************** . * * *

49. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
cagcgtgtcgagccggctcggcgcgttgat	Protospacer
**  *********. ************  .

50. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

51. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

52. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP014142 (Thermus parvatiensis strain RL plasmid pTP143, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

53. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

54. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

55. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

56. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP016313 (Thermus brockianus strain GE-1 plasmid pTB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggatcacgaggtcgta	Protospacer
 ***.****************** **..* *.

57. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

58. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

59. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

60. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
tcggtggcctcgtccaggatcagcaggcgcgg	Protospacer
  **.***************** ***.* * *

61. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
accgcgccccacagcaccgcccagccgaggac	Protospacer
. **.. ***.****************.****

62. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029453 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

63. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
ggcaacacccgcatcaccgcccagccggagaa	Protospacer
***.  .****** **************.**

64. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

65. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

66. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gccgcggccagcatcaccgcccagccggggct	Protospacer
* **..*** *** **************** .

67. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023069 (Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

68. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029233 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

69. spacer 3.14|2254568|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KY092484 (Streptomyces phage Raleigh, complete genome) position: , mismatch: 7, identity: 0.781

cagcggcgatcctgagcggttccacgaggcgg	CRISPR spacer
cggcggcgatcctgagcagttcctcgctgtcg	Protospacer
*.***************.***** **  *. *

70. spacer 3.14|2254568|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to JX182371 (Streptomyces phage SV1, complete genome) position: , mismatch: 7, identity: 0.781

cagcggcgatcctgagcggttccacgaggcgg	CRISPR spacer
cggcggcgatcctgagcagttcctcggcggtg	Protospacer
*.***************.***** **. *  *

71. spacer 3.15|2254629|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

atctgcctcagaccttcgatgcg--gagcaggcc	CRISPR spacer
atctgtcccagaccttcgatgcgtcggccaag--	Protospacer
*****.*.***************  *. **.*

72. spacer 3.18|2254812|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgcggcgtggcgggaatcaaggt--cgtcggt	CRISPR spacer
tcggcggcgtggagggaatcaagttcacgtcg--	Protospacer
   ********* ********** *  *****

73. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN871440 (UNVERIFIED: Aeromonas phage AsFcp_1, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

74. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to AY266303 (Bacteriophage Aeh1, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

75. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_023688 (Aeromonas phage PX29, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

76. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_005260 (Aeromonas phage Aeh1, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

77. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH791407 (UNVERIFIED: Aeromonas phage AsFcp_4, partial genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

78. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH791401 (UNVERIFIED: Aeromonas phage AsFcp_2, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

79. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
ccccccgttcgatcgtcacgccgatcgtcggt	Protospacer
** .*  ************* *****.****.

80. spacer 1.17|64032|35|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020447 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed7, complete sequence) position: , mismatch: 8, identity: 0.771

ctgggtccgctgatcgggcgcgagat------cgacctact	CRISPR spacer
ctggatccgctgatccggcgcgagatgcaggacga------	Protospacer
****.********** **********      ***

81. spacer 1.17|64032|35|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_020489 (Rhodobacter phage RcapNL, complete genome) position: , mismatch: 8, identity: 0.771

ctgggtccgctgatcgggcgcgagatcgacctact	CRISPR spacer
atcgggccgctgatcgagcgcgagatcgcctggct	Protospacer
 * ** **********.*********** *. .**

82. spacer 1.17|64032|35|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to JF974309 (Rhodobacter phage RcNL1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 8, identity: 0.771

ctgggtccgctgatcgggcgcgagatcgacctact	CRISPR spacer
atcgggccgctgatcgagcgcgagatcgcctggct	Protospacer
 * ** **********.*********** *. .**

83. spacer 1.22|64370|33|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045327 (Mycobacterium sp. THAF192 plasmid pTHAF192_b, complete sequence) position: , mismatch: 8, identity: 0.758

gatcggtgagcgccagcggcagagcgacacggc	CRISPR spacer
ttcctgcgggcgccagcgccagtgcgacacggc	Protospacer
  .* *.*.********* *** **********

84. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MT498048 (Mycobacterium phage Raymond7, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

85. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK524522 (Mycobacterium phage Purgamenstris, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

86. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MT684588 (Mycobacterium phage Snekmaggedon, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

87. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MT498042 (Mycobacterium phage Rebel, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

88. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MT498044 (Mycobacterium phage Jamie19, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

89. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KX756439 (Mycobacterium phage PhancyPhin, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

90. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK392367 (Mycobacterium phage BabeRuth, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

91. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK524520 (Mycobacterium phage Nenae, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

92. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to JN624851 (Mycobacterium phage Redi, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

93. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK524509 (Mycobacterium phage SpongeBob, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

94. spacer 1.26|64635|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK524528 (Mycobacterium phage ShrimpFriedEgg, complete genome) position: , mismatch: 8, identity: 0.765

aacaggagggcacccatctgtggcg-caaatctgt	CRISPR spacer
cacacgagggaacccatctgtggcgacggattcg-	Protospacer
 *** ***** ************** *..**..*

95. spacer 1.27|64701|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cttctgttcggcatcgccggcgcgtctggttccg	CRISPR spacer
aatcgccacggcatcgcctgcgcgtctggctccg	Protospacer
  **  . ********** **********.****

96. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

97. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

98. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

99. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

100. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

101. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

102. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

103. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

104. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

105. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

106. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
ctactgatcgataccggcgtcgacggtctt	Protospacer
 .*    ***********. **********

107. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

108. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
gtcgtggtcgagaccggcaacgacggtccc	Protospacer
*. *   **** ****************..

109. spacer 2.8|2181980|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 8, identity: 0.733

gatcgcgcatgatggccggatcaacgctca	CRISPR spacer
ccacgcccatgatggccggatcaaggccgg	Protospacer
   *** ***************** **. .

110. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cgcgatcgccggcaggacgtcgttgaactc	Protospacer
  *** ******* ***********   .*

111. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cgcgatcgccggcaggacgtcgttgaactc	Protospacer
  *** ******* ***********   .*

112. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cgcgagcgccggccggtcgtcgtgccggac	Protospacer
  ************** ******  . * *

113. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cgcgatcgccggcaggacgtcgttgaactc	Protospacer
  *** ******* ***********   .*

114. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cgcgatcgccggcaggacgtcgttgaactc	Protospacer
  *** ******* ***********   .*

115. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
cgcgatcgccggcaggacgtcgttgaactc	Protospacer
  *** ******* ***********   .*

116. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH834606 (Arthrobacter phage Coral, complete genome) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggtccg	Protospacer
****** ************** . * . *

117. spacer 2.9|2182046|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN234214 (Arthrobacter phage Amelia, complete genome) position: , mismatch: 8, identity: 0.733

atcgagcgccggccggacgtcgttgtcgcc	CRISPR spacer
atcgagggccggccggacgtctcgggtccg	Protospacer
****** ************** . * . *

118. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009123 (Sphingopyxis fribergensis strain Kp5.2 plasmid pSfKp5.2, complete sequence) position: , mismatch: 8, identity: 0.733

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
cgcttcgtcgagcttcctcggcgcgttcgg	Protospacer
*..  .********* ************

119. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.733

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
gttggggtcgagcttgatcggcgcggccca	Protospacer
  *** ********** ******** .*.

120. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.75

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
gcggcggtctcgtccacgatcaccagcttctc	Protospacer
. *****.******** ********* ..**

121. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to MN693269 (Marine virus AFVG_25M487, complete genome) position: , mismatch: 8, identity: 0.75

aaggcggcctcgtccaggatcaccagaccctg----	CRISPR spacer
aaggcggcctcgtcgaggaccac----tccggagag	Protospacer
************** ****.***    .** *

122. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

123. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

124. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

125. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

126. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP050140 (Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

127. spacer 3.3|2253897|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgacggtgaaggggaggttgttcgacgc	CRISPR spacer
atcgtgacggtgaacgggaggttgtacagggc	Protospacer
..**.********* ********** *.. **

128. spacer 3.8|2254202|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_029005 (Streptomyces phage phiSAJS1, complete genome) position: , mismatch: 8, identity: 0.75

tggctcgggaccatcttagcggacgacatggc	CRISPR spacer
tggttcgggaccagcttagcggacatgaagaa	Protospacer
***.********* **********.  * *.

129. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gcgagggcgcgcagcaccgcccagccgcgggc	Protospacer
*  . .** ****************** **.*

130. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gcgagggcgcgcagcaccgcccagccgcgggc	Protospacer
*  . .** ****************** **.*

131. spacer 3.10|2254324|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.75

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
ataagcaggatcacgatcgcgccgatcgtcgt	Protospacer
 * *.* ***************.**** **

132. spacer 3.10|2254324|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
ctcgactggatctcgatcgtgctgatcatgat	Protospacer
**..******** ******.******* *

133. spacer 3.10|2254324|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.75

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
ctcgactggatctcgatcgtgctgatcatgat	Protospacer
**..******** ******.******* *

134. spacer 3.12|2254446|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK937607 (Gordonia phage Zipp, complete genome) position: , mismatch: 8, identity: 0.75

cgcgggtcgctcggcaatcgcgctgctatcgc	CRISPR spacer
cgcgggtcgctcggcaaccgcgccccggcatc	Protospacer
*****************.*****. * ..  *

135. spacer 3.12|2254446|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK937611 (Gordonia phage Verity, complete genome) position: , mismatch: 8, identity: 0.75

cgcgggtcgctcggcaatcgcgctgctatcgc	CRISPR spacer
cgcgggtcgctcggcaaccgcgccccggcatc	Protospacer
*****************.*****. * ..  *

136. spacer 3.13|2254507|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

gccggacgagcgcgtacatgctctggtgcatc-	CRISPR spacer
tccggtagagcgcgtacatgctct-gcacgccg	Protospacer
 ****  ***************** *..*..*

137. spacer 3.14|2254568|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MH825699 (Streptomyces phage Darolandstone, complete genome) position: , mismatch: 8, identity: 0.75

cagcggcgatcctgagcggttccacgaggcgg	CRISPR spacer
cggcggcgatcctgagcagttcctcgctggtc	Protospacer
*.***************.***** **  *

138. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019949 (Methylocystis bryophila strain S285 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
cggctctcgcgcgtgctgaccacgctcctctt	Protospacer
  *.************** *****.****  .

139. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
acggtctcgcgcgtgccgtccacgtagtcgta	Protospacer
*** ************.********  ..*

140. spacer 3.18|2254812|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

agcgcggcgtggcgggaatcaaggtcgtcggt	CRISPR spacer
ggtgcggcgttgcgggcatcaaggtcctggcc	Protospacer
.*.******* ***** ********* * * .

141. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaccgcggcgatcatcacggcgatcatcagc	Protospacer
* ..**.  *****.**************.**

142. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033873 (Caulobacter sp. FWC26 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
aggacatgacgatcgtcgcggcgatcttcggc	Protospacer
  * *.*  ********.******** *****

143. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaccgcggcgatcatcacggcgatcatcagc	Protospacer
* ..**.  *****.**************.**

144. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cctgcaaggcgatcgtcacggcgacgatcggc	Protospacer
**  *.   ***************. ******

145. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaccgcggcgatcatcacggcgatcatcagc	Protospacer
* ..**.  *****.**************.**

146. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaccgcggcgatcatcacggcgatcatcagc	Protospacer
* ..**.  *****.**************.**

147. spacer 1.1|62967|34|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

gacaaccttgcgactcctgtccgacgcggtcggc	CRISPR spacer
acctgccttgcgacgcctggccgacgcggtgagg	Protospacer
. * .********* **** ********** .*

148. spacer 1.2|63033|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gggtgcgatcctccgcatggtgcaggaggacatc	CRISPR spacer
tgtgaaaatcctgcgcatggtgcagcaggacaac	Protospacer
 *  . .***** ************ ****** *

149. spacer 1.2|63033|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

gggtgcgatcctccgcatggtgcaggaggacatc	CRISPR spacer
tgtgaaaatcctgcgcatggtgcagcaggacaac	Protospacer
 *  . .***** ************ ****** *

150. spacer 1.22|64370|33|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000063 (Agrobacterium fabrum strain CFBP6549 plasmid pTi_CFBP6549, complete sequence) position: , mismatch: 9, identity: 0.727

gatcggtgagcgccagcggcagagcga----cacggc	CRISPR spacer
cggcggtgagctccagcggcagggcgattgtca----	Protospacer
 . ******** **********.****    **

151. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 9, identity: 0.7

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
ccagttttcgataccgggaacgaccaggca	Protospacer
 *** ************ ****** .  .

152. spacer 2.6|2181848|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 9, identity: 0.7

gcagatttcgataccggcaacgacggtctt	CRISPR spacer
ccagttttcgataccgggaacgaccaggca	Protospacer
 *** ************ ****** .  .

153. spacer 2.8|2181980|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 9, identity: 0.7

gatcgcgcatgatggccggatcaacgctca	CRISPR spacer
tcacgcgcttggtggccggatcaacgaatg	Protospacer
   ***** **.**************  ..

154. spacer 2.10|2182112|30|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KP087946 (Eel River basin pequenovirus isolate c15437, complete genome) position: , mismatch: 9, identity: 0.7

catggtgtcgagcttgctcggcgcgttctc	CRISPR spacer
ggcggtgtcgagcgggctcggcgcgtatcg	Protospacer
 ..**********  *********** ..

155. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to MT658803 (Mycobacterium phage Reindeer, complete genome) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
gtcagagcctcgtccaggatcaccagatccgc	Protospacer
.  . .*********************.**

156. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
cgagcggcctcgtccacgaccaccagatcgaa	Protospacer
 ..************* **.*******.*  .

157. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP045330 (Labrenzia sp. THAF191b plasmid pTHAF191b_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

158. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP045346 (Labrenzia sp. THAF187b plasmid pTHAF187b_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

159. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP045334 (Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

160. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP045382 (Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

161. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP045382 (Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

162. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
aggtgggcctcgtctacgatcaccagacgaac	Protospacer
*.*  *********.* ***********

163. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
ttgtcggcctcgtccaggatgacgagatcaaa	Protospacer
  * **************** ** ***.*  .

164. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
tgcgcggcctcggccaggatccccagggcgtc	Protospacer
 . ********* ******** ****. * *

165. spacer 3.2|2253837|31|NC_010125|CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 9, identity: 0.71

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
cgggcgtgctcggcaaccccaaacgcaacgc	Protospacer
.   * ****************** *** ..

166. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gtcacggcccgcaggcccgcccagccgggccg	Protospacer
* *...********  *************

167. spacer 3.10|2254324|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594664 (Variovorax sp. RA8 plasmid 3) position: , mismatch: 9, identity: 0.719

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
gaaacctggatcacgatcgagcttatccagtg	Protospacer
   * ************** *** ****  *.

168. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 9, identity: 0.719

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
gcttgcctgctcgacccgcgcccaggcggctg	Protospacer
 ..*   ..****************.******

169. spacer 3.15|2254629|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_013545 (Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcctcagaccttcgatgcggagcaggcc	CRISPR spacer
ctaagaacgagaccttcgatgcggtgcagacc	Protospacer
 *  *  . *************** ****.**

170. spacer 3.15|2254629|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021796 (Sinorhizobium meliloti strain USDA1157 plasmid accessoryA, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcctcagaccttcgatgcggagcaggcc	CRISPR spacer
ctaagaacgagaccttcgatgcggtgcagacc	Protospacer
 *  *  . *************** ****.**

171. spacer 3.15|2254629|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021215 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcctcagaccttcgatgcggagcaggcc	CRISPR spacer
ctaagaacgagaccttcgatgcggtgcagacc	Protospacer
 *  *  . *************** ****.**

172. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

173. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

174. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

175. spacer 3.17|2254751|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

176. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_007763 (Rhizobium etli CFN 42 plasmid p42b, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
ggcgcccgttcggcggtgatcccgccaatggc	Protospacer
. *..*************** **** **.*..

177. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020907 (Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
ggcgcccgttcggcggtgatcccgccaatggc	Protospacer
. *..*************** **** **.*..

178. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_021906 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
ggcgcccgttcggcggtgatcccgccaatggc	Protospacer
. *..*************** **** **.*..

179. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
aagatcagttcgacggtgatgccgcgcgtggg	Protospacer
*  *** *****.************* ..*.

180. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KX669658 (Ochrobactrum phage POA1180, complete genome) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
cccatctgttgggcggtgatgccgttgagcag	Protospacer
 *****.*** *************. .*  *

181. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

182. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

183. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013525 (Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

184. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013554 (Rhizobium phaseoli strain N931 plasmid pRphaN931b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

185. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013588 (Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

186. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013560 (Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

187. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

188. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

189. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

190. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

191. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

192. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

193. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013565 (Rhizobium phaseoli strain N831 plasmid pRphaN831b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

194. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

195. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

196. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_010998 (Rhizobium etli CIAT 652 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cgaaccaggcggtcgtcgcggcgatcatcggc	Protospacer
* . *    **.*****.**************

197. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045361 (Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
cactttgcgcgatcgtcgcggtgatcatcggc	Protospacer
*  *.  . ********.***.**********

198. spacer 1.27|64701|34|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015368 (Methylobacterium phyllosphaerae strain CBMB27 plasmid CBMB27-p1, complete sequence) position: , mismatch: 10, identity: 0.706

cttctgttcggcatcgccggcgcgtctggttccg	CRISPR spacer
tgggcgctcggcgtcgccgccgcgtctggttttg	Protospacer
.   .*.*****.****** ***********..*

199. spacer 3.1|2253776|32|NC_010125|CRISPRCasFinder,CRT matches to NZ_CP045120 (Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
ccggcggcctcggccaggctcaccacggagtc	Protospacer
  ********** ***** ****** .   *

200. spacer 3.9|2254263|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046906 (Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
atcgtggtccgcagcaccgcccagctcatcgc	Protospacer
. ***.*.*****************. .  .*

201. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK016499 (Mycobacterium phage Mangethe, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

202. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK919480 (Mycobacterium phage Techage, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

203. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MT024866 (Mycobacterium phage Willsammy, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

204. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN892486 (Mycobacterium phage KilKor, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

205. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN908683 (Mycobacterium phage StressBall, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

206. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MK524508 (Mycobacterium phage Zilizebeth, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

207. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN892484 (Mycobacterium phage CactusJack, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

208. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MF140399 (Mycobacterium phage Bartholomew, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

209. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN807249 (Mycobacterium phage Megiddo, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

210. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_023552 (Mycobacterium phage Donovan, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

211. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to KC691256 (Mycobacterium phage Fishburne, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

212. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN807250 (Mycobacterium phage Glaske, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

213. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MF472894 (Mycobacterium phage Majeke, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

214. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to MN807248 (Mycobacterium phage Phalm, complete genome) position: , mismatch: 10, identity: 0.688

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
cgtggggcactcaacccgcgcccagtcgtacg	Protospacer
. .  *******.************ **  .*

215. spacer 3.13|2254507|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_014030 (Salinibacter ruber M8 plasmid pSR61, complete sequence) position: , mismatch: 10, identity: 0.688

gccggacgagcgcgtacatgctctggtgcatc	CRISPR spacer
cccggacgatcgcgtacacgctctgcccggag	Protospacer
 ******** ********.****** .  .

216. spacer 3.13|2254507|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gccggacgagcgcgtacatgctctggtgcatc	CRISPR spacer
cgttgacgagcgcgtacatgcccttgttgaag	Protospacer
  . *****************.** **  *

217. spacer 3.19|2254873|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 10, identity: 0.688

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
gccatcagttcggcggtgctgccgtagcggcc	Protospacer
.***** *********** *****...  * .

218. spacer 1.29|64833|35|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 11, identity: 0.686

gggaaacgaaccgtgatgtcgtggcggaaagaaag	CRISPR spacer
agcaatcgaaccgtgatgtcgtgggggacttccgc	Protospacer
.* ** ****************** ***     .

219. spacer 3.11|2254385|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 11, identity: 0.656

ttctcggcactcgacccgcgcccagacggctg	CRISPR spacer
catgcggaactcgacccgcgcctagacatgga	Protospacer
. . *** **************.****.   .

220. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 11, identity: 0.656

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
gaaggctttcgatcgtcatcgcgatcatcaat	Protospacer
  .   ************. *********...

221. spacer 3.22|2255056|32|NC_010125|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 11, identity: 0.656

ccgtcgtttcgatcgtcacggcgatcatcggc	CRISPR spacer
gaaggctttcgatcgtcatcgcgatcatcaat	Protospacer
  .   ************. *********...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

368587 : 413163

Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(28.57%)

transposase,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012222646.1\|368587_369646_+\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_050935107.1\|369798_370920_-	ABC transporter permease	NA	NA	NA	NA
WP_012222652.1\|371139_371997_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012222656.1\|372257_374186_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_012222658.1\|374182_376051_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_012222660.1\|376053_376956_+	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_012222662.1\|376937_377738_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_012222665.1\|377772_379266_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012222667.1\|379311_380325_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012222669.1\|380379_380910_-	RcnB family protein	NA	NA	NA	NA
WP_012554306.1\|382792_383641_+	hypothetical protein	NA	NA	NA	NA
WP_012222673.1\|383752_384043_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012554307.1\|384032_384332_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012222646.1\|385040_386099_+\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_012554308.1\|386418_386601_-	hypothetical protein	NA	NA	NA	NA
WP_144880585.1\|388166_388463_+	hypothetical protein	NA	NA	NA	NA
WP_041249247.1\|388455_388815_+	hypothetical protein	NA	NA	NA	NA
WP_157864127.1\|389212_390330_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_050934969.1\|390358_391039_-	hypothetical protein	NA	NA	NA	NA
WP_012222702.1\|391373_392813_-	hypothetical protein	NA	NA	NA	NA
WP_012222704.1\|393089_393770_+	DNA methyltransferase	A0A2K9VH43	Faecalibacterium_phage	3.5e-31	38.6
WP_041249632.1\|394135_394552_+	hypothetical protein	NA	NA	NA	NA
WP_041249248.1\|395204_395522_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_012222712.1\|395572_395824_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041249249.1\|396237_396882_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_012222719.1\|396978_397275_+	hypothetical protein	NA	NA	NA	NA
WP_012222721.1\|397271_398345_+	replication initiator protein A	NA	NA	NA	NA
WP_012222723.1\|398341_398830_+	DUF2840 domain-containing protein	NA	NA	NA	NA
WP_012222725.1\|398826_399456_+	S26 family signal peptidase	NA	NA	NA	NA
WP_012222727.1\|399514_399856_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_012222729.1\|399852_400524_+	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	1.6e-12	40.0
WP_041249250.1\|400669_401752_+\|transposase	IS110-like element ISGdi15 family transposase	NA	NA	NA	NA
WP_144880576.1\|402120_402318_+	hypothetical protein	NA	NA	NA	NA
WP_012222742.1\|402314_404054_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_012222744.1\|404183_404741_+	flavin reductase family protein	NA	NA	NA	NA
WP_012222746.1\|404752_405184_-	hypothetical protein	NA	NA	NA	NA
WP_012222748.1\|405193_405445_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_076611705.1\|406715_407944_-\|transposase	IS3-like element ISGdi14 family transposase	Q8W6R2	Burkholderia_virus	1.9e-99	64.2
WP_012222757.1\|408617_409397_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	37.3
WP_012553862.1\|410490_411072_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012222762.1\|411296_412337_+	Dyp-type peroxidase	NA	NA	NA	NA
WP_012222764.1\|412338_413163_+\|bacteriocin	bacteriocin family protein	NA	NA	NA	NA

DBSCAN-SWA_2

951423 : 1006963

Rhizobium_phage(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012553578.1\|951423_952002_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_012223788.1\|952001_953096_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_012223796.1\|954625_955273_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_144880108.1\|955278_955827_+	ribosome silencing factor	NA	NA	NA	NA
WP_012223805.1\|956399_957116_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_012223807.1\|957435_957786_-	RidA family protein	NA	NA	NA	NA
WP_012553574.1\|957856_958513_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_012223808.1\|958509_959583_-	XdhC family protein	NA	NA	NA	NA
WP_173363398.1\|959761_960409_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_144880103.1\|960453_960960_+	DUF192 domain-containing protein	NA	NA	NA	NA
WP_012223811.1\|960964_962101_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_081482917.1\|967981_969640_-	recombinase family protein	R9TP69	Rhizobium_phage	1.7e-87	36.4
WP_012223814.1\|970240_972298_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_012223815.1\|972401_973124_-	hypothetical protein	NA	NA	NA	NA
WP_012223817.1\|974484_975165_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_041249281.1\|975161_976166_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_012223819.1\|976241_977099_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012223821.1\|977389_978661_+	SIR2 family protein	NA	NA	NA	NA
WP_012223823.1\|978657_980484_+	ATP-binding protein	NA	NA	NA	NA
WP_012223825.1\|980609_982151_+	serine/threonine protein kinase	A0A2I2L395	Orpheovirus	1.4e-14	26.7
WP_157864127.1\|982231_983348_+\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012223826.1\|983508_985695_-	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	4.0e-68	30.1
WP_081482848.1\|985936_986125_+	hypothetical protein	NA	NA	NA	NA
WP_012223829.1\|986138_987845_+	recombinase family protein	R9TP69	Rhizobium_phage	1.7e-82	35.7
WP_041249676.1\|987954_988320_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_041249283.1\|988343_988523_+	DUF4102 domain-containing protein	E5AGD0	Erwinia_phage	6.6e-06	49.1
WP_157870991.1\|988758_989463_+	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_012223837.1\|989466_990522_+	macro domain-containing protein	B0FIJ9	Escherichia_phage	1.3e-24	42.0
WP_041249285.1\|992284_993574_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	5.1e-39	33.1
WP_041249286.1\|993573_994374_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.2e-57	45.2
WP_012223848.1\|994370_995447_+	DUF4917 family protein	NA	NA	NA	NA
WP_012222646.1\|995921_996980_-\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_157870992.1\|997142_998329_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012223855.1\|998398_999172_-	hypothetical protein	NA	NA	NA	NA
WP_156472016.1\|999257_1000086_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012223859.1\|1001645_1002785_-	MFS transporter	NA	NA	NA	NA
WP_012223861.1\|1003900_1004224_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012223862.1\|1004277_1005174_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_041249290.1\|1005439_1006963_+\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1051734 : 1109870

Leptospira_phage(22.22%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012223918.1\|1051734_1052409_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-29	39.0
WP_012223919.1\|1052518_1053511_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_012223920.1\|1053507_1054371_+	hypothetical protein	NA	NA	NA	NA
WP_012223921.1\|1054456_1054714_+	hypothetical protein	NA	NA	NA	NA
WP_041249297.1\|1054768_1054954_-	hypothetical protein	NA	NA	NA	NA
WP_157870995.1\|1055089_1055383_-	hypothetical protein	NA	NA	NA	NA
WP_041249299.1\|1055397_1055826_+	MFS transporter	NA	NA	NA	NA
WP_012223923.1\|1055977_1057795_+	DUF885 family protein	NA	NA	NA	NA
WP_144880446.1\|1058194_1058485_-	hypothetical protein	NA	NA	NA	NA
WP_157864216.1\|1058481_1059710_-\|transposase	IS3-like element ISGdi14 family transposase	Q8W6R2	Burkholderia_virus	2.5e-99	64.2
WP_041249300.1\|1060094_1060811_+	YfdX family protein	NA	NA	NA	NA
WP_041249301.1\|1060845_1062285_-	cytosine permease	NA	NA	NA	NA
WP_012223932.1\|1064361_1065072_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_041249303.1\|1065234_1065789_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.5e-19	35.6
WP_041249208.1\|1067936_1068158_+	hypothetical protein	NA	NA	NA	NA
WP_012223947.1\|1069165_1069723_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_012223951.1\|1071509_1071992_-	Hsp20 family protein	M4QDX9	Cyanophage	2.0e-17	37.2
WP_039905436.1\|1072027_1072309_-	hypothetical protein	NA	NA	NA	NA
WP_102324447.1\|1072307_1072571_+	YXWGXW repeat-containing protein	NA	NA	NA	NA
WP_010511782.1\|1073091_1073340_+	hypothetical protein	NA	NA	NA	NA
WP_010511780.1\|1073448_1073712_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_012223960.1\|1073704_1074049_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	5.9e-19	48.4
WP_157870996.1\|1076207_1077324_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.6e-52	41.9
WP_041249691.1\|1077461_1078673_-	hypothetical protein	NA	NA	NA	NA
WP_012224132.1\|1078702_1079803_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2D2W2B8	Stenotrophomonas_phage	7.0e-05	28.2
WP_162098029.1\|1082444_1083392_+	hypothetical protein	NA	NA	NA	NA
WP_012224136.1\|1083388_1085179_+	hypothetical protein	NA	NA	NA	NA
WP_012224137.1\|1085171_1086173_+	hypothetical protein	NA	NA	NA	NA
WP_081482854.1\|1086215_1086482_+	DNA cytosine methyltransferase	NA	NA	NA	NA
WP_041249309.1\|1087942_1089004_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.7e-123	62.6
WP_157864196.1\|1089680_1089896_+	hypothetical protein	NA	NA	NA	NA
WP_157864168.1\|1092671_1092890_+	hypothetical protein	NA	NA	NA	NA
WP_012553437.1\|1094405_1095230_-\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012224144.1\|1096108_1097095_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_173363400.1\|1097157_1098252_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_012224146.1\|1098248_1098494_+	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_012224147.1\|1098465_1099344_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012224149.1\|1099452_1100928_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012224151.1\|1101063_1101672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012224153.1\|1101756_1102857_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012224155.1\|1102853_1105670_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_012224158.1\|1107025_1107475_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012224160.1\|1107544_1108351_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_157870998.1\|1108773_1109870_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.8e-46	41.0

DBSCAN-SWA_4

1544264 : 1559748

Leptospira_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081482862.1\|1544264_1545089_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012224911.1\|1545375_1546455_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041249339.1\|1547028_1547661_-	hypothetical protein	NA	NA	NA	NA
WP_041249340.1\|1548406_1548979_-	hypothetical protein	NA	NA	NA	NA
WP_012224920.1\|1549061_1549544_+	DUF2840 domain-containing protein	NA	NA	NA	NA
WP_012224922.1\|1550222_1551311_+\|transposase	IS110-like element ISGdi15 family transposase	NA	NA	NA	NA
WP_012224926.1\|1552112_1554224_+	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA
WP_012224927.1\|1554389_1554821_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_041249341.1\|1555200_1556007_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_157864127.1\|1556026_1557144_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_157871009.1\|1557777_1558005_-	hypothetical protein	NA	NA	NA	NA
WP_081482864.1\|1558959_1559748_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1573733 : 1597579

Enterobacteria_phage(40.0%)

transposase,integrase

attL 1589501:1589515|attR 1599207:1599221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012222646.1\|1573733_1574792_-\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_012553437.1\|1576160_1576985_-\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_081434717.1\|1577610_1577820_+	hypothetical protein	NA	NA	NA	NA
WP_157871010.1\|1577860_1578952_-	hypothetical protein	NA	NA	NA	NA
WP_012224956.1\|1578889_1579882_+\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_012224962.1\|1583251_1584097_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.1e-49	46.1
WP_041249349.1\|1584093_1585341_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.6e-40	35.6
WP_041249350.1\|1586234_1587680_+	hypothetical protein	NA	NA	NA	NA
WP_012222260.1\|1588016_1588853_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_144880578.1\|1588781_1589468_-	hypothetical protein	NA	NA	NA	NA
WP_012553975.1\|1589482_1590250_-	hypothetical protein	NA	NA	NA	NA
1589501:1589515	attL	NA	NA	NA	NA
WP_012224980.1\|1590410_1590755_-	hypothetical protein	NA	NA	NA	NA
WP_012553977.1\|1591175_1592144_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_012226833.1\|1592250_1593774_+\|transposase	IS21-like element ISGdi17 family transposase	NA	NA	NA	NA
WP_012224987.1\|1593763_1594543_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	37.3
WP_012553437.1\|1594844_1595669_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012224988.1\|1595983_1597579_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JNS1	Bacillus_phage	2.1e-05	29.9
1599207:1599221	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2384276 : 2394020

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041249404.1\|2384276_2387189_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	60.2
WP_041249405.1\|2387483_2388038_+	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	3.2e-38	64.3
WP_012226218.1\|2388205_2390998_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.1e-93	32.8
WP_012226220.1\|2390990_2391500_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.3e-30	45.2
WP_012226222.1\|2391558_2392044_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.4e-34	50.0
WP_012226224.1\|2392253_2394020_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	32.9

DBSCAN-SWA_7

2802835 : 2849189

Planktothrix_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012226833.1\|2802835_2804359_-\|transposase	IS21-like element ISGdi17 family transposase	NA	NA	NA	NA
WP_012553430.1\|2804708_2805431_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.2e-26	38.2
WP_081482922.1\|2805417_2805783_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_012223140.1\|2805912_2807256_+\|transposase	IS1182-like element ISGdi13 family transposase	NA	NA	NA	NA
WP_041249443.1\|2807322_2807508_+	hypothetical protein	NA	NA	NA	NA
WP_012226840.1\|2807521_2808181_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012553433.1\|2808177_2809023_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012553434.1\|2809246_2809462_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_041249444.1\|2809448_2810873_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012226848.1\|2810869_2812024_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_012226850.1\|2812020_2812968_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_012226852.1\|2812972_2813614_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012226854.1\|2813652_2815047_+	dihydropyrimidinase	NA	NA	NA	NA
WP_012553437.1\|2816399_2817224_-\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012226859.1\|2817265_2817484_-	hypothetical protein	NA	NA	NA	NA
WP_012222260.1\|2817509_2818346_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012226673.1\|2818414_2819665_+\|transposase	IS701-like element ISGdi12 family transposase	NA	NA	NA	NA
WP_012226861.1\|2819934_2820135_-	hypothetical protein	NA	NA	NA	NA
WP_041249446.1\|2821685_2822408_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012226868.1\|2822522_2823464_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012226876.1\|2823475_2824366_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041249447.1\|2824513_2825302_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.7e-06	25.6
WP_012226880.1\|2825343_2826921_+	acetolactate synthase large subunit	NA	NA	NA	NA
WP_041249822.1\|2826929_2827715_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_012226884.1\|2827699_2828578_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_012226886.1\|2828574_2829489_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012226888.1\|2829491_2829725_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_012226890.1\|2829721_2830894_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_012226892.1\|2830890_2831892_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_041249448.1\|2831888_2832572_-	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_041249823.1\|2832571_2834005_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_041249449.1\|2834025_2834805_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_012226900.1\|2834801_2837234_-	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_012226902.1\|2837246_2837525_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_012226904.1\|2837524_2837857_-	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_081482884.1\|2837853_2838831_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_012226908.1\|2839013_2839934_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_041249450.1\|2840113_2841169_+	aldo/keto reductase	NA	NA	NA	NA
WP_041249451.1\|2841203_2841632_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_012226914.1\|2841639_2843640_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_162098033.1\|2843813_2843963_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_157871047.1\|2844038_2844461_+	hypothetical protein	NA	NA	NA	NA
WP_012226916.1\|2844470_2845097_+	hypothetical protein	NA	NA	NA	NA
WP_012226917.1\|2845144_2845555_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_012226918.1\|2845592_2847332_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_157871048.1\|2847328_2847526_-	hypothetical protein	NA	NA	NA	NA
WP_157871049.1\|2848244_2849189_+\|transposase	IS630-like element ISGdi6 family transposase	A0A1V0SCG6	Indivirus	2.1e-10	26.2

DBSCAN-SWA_8

3658163 : 3709056

Enterobacteria_phage(18.18%)

plate,transposase,integrase

attL 3671101:3671156|attR 3707257:3707312

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157871070.1\|3658163_3658625_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_012228228.1\|3659636_3660365_-\|plate	baseplate J/gp47 family protein	A0A0C4UQU9	Shigella_phage	6.5e-15	30.4
WP_012228230.1\|3660365_3660866_-	phage GP46 family protein	NA	NA	NA	NA
WP_012228232.1\|3660877_3661390_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_012228234.1\|3661386_3662589_-	bacteriophage related protein	Q8W618	Enterobacteria_phage	1.2e-26	28.4
WP_012228236.1\|3662651_3663959_-	DNA circularization N-terminal domain-containing protein	Q8W619	Enterobacteria_phage	3.3e-17	25.2
WP_041249561.1\|3664030_3664297_+	BrnT family toxin	NA	NA	NA	NA
WP_041249562.1\|3664274_3664580_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_041249563.1\|3664599_3664962_-	hypothetical protein	A0A1D8KS53	Synechococcus_phage	7.9e-06	50.0
WP_012228247.1\|3667451_3668516_+	hypothetical protein	A0A068CDI9	Rhizobium_phage	3.2e-55	32.3
WP_157871071.1\|3668521_3668989_+	hypothetical protein	NA	NA	NA	NA
WP_041249565.1\|3668985_3669648_+	hypothetical protein	NA	NA	NA	NA
WP_157871072.1\|3669640_3669883_+	hypothetical protein	NA	NA	NA	NA
3671101:3671156	attL	NA	NA	NA	NA
WP_081482906.1\|3671184_3671337_+	hypothetical protein	NA	NA	NA	NA
WP_041249566.1\|3671284_3672529_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.3e-111	52.8
WP_012228256.1\|3672860_3674090_+\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	8.5e-84	45.3
WP_041249894.1\|3674669_3675683_+	hypothetical protein	NA	NA	NA	NA
WP_041249567.1\|3676109_3676892_+	hypothetical protein	NA	NA	NA	NA
WP_012228272.1\|3677713_3677983_-	hypothetical protein	NA	NA	NA	NA
WP_041249568.1\|3677979_3678192_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012228275.1\|3678549_3678777_+	hypothetical protein	NA	NA	NA	NA
WP_041249569.1\|3678773_3679049_+	hypothetical protein	NA	NA	NA	NA
WP_157871073.1\|3679170_3679440_+	hypothetical protein	NA	NA	NA	NA
WP_012228278.1\|3679439_3679640_+	hypothetical protein	NA	NA	NA	NA
WP_012228279.1\|3679636_3679852_+	hypothetical protein	NA	NA	NA	NA
WP_041249571.1\|3680264_3680522_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041249572.1\|3680855_3681188_+	hypothetical protein	NA	NA	NA	NA
WP_012228282.1\|3681184_3682054_+	hypothetical protein	NA	NA	NA	NA
WP_012228283.1\|3682050_3682365_+	hypothetical protein	NA	NA	NA	NA
WP_012228284.1\|3682361_3684890_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.2e-62	34.2
WP_157871074.1\|3685184_3685829_+	hypothetical protein	NA	NA	NA	NA
WP_012228286.1\|3685825_3686623_+	hypothetical protein	NA	NA	NA	NA
WP_157871075.1\|3686689_3686977_+	hypothetical protein	NA	NA	NA	NA
WP_157871076.1\|3687360_3689598_+	hypothetical protein	NA	NA	NA	NA
WP_041249574.1\|3689597_3692171_+	hypothetical protein	NA	NA	NA	NA
WP_012228296.1\|3692163_3693381_+	hypothetical protein	NA	NA	NA	NA
WP_041249575.1\|3693377_3693665_+	hypothetical protein	A0A2H5BHK6	Acinetobacter_phage	7.9e-09	47.1
WP_050935090.1\|3693732_3693987_+	hypothetical protein	NA	NA	NA	NA
WP_012228307.1\|3694141_3694510_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012228308.1\|3694506_3694758_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012228309.1\|3694947_3695514_+	recombinase family protein	M9Q1K0	Clostridium_phage	5.7e-27	43.3
WP_157871102.1\|3695864_3696725_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_012228311.1\|3696806_3697250_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_012228312.1\|3697274_3697718_+	GFA family protein	NA	NA	NA	NA
WP_157871077.1\|3697736_3699338_-	amidase	NA	NA	NA	NA
WP_012228314.1\|3699334_3700216_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012228315.1\|3700469_3700766_-	pentapeptide MXKDX repeat protein	NA	NA	NA	NA
WP_012228316.1\|3700872_3701622_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_012228317.1\|3701618_3702242_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_012228318.1\|3702394_3702859_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_012228319.1\|3703037_3703742_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_012228320.1\|3705542_3706964_-	adenylosuccinate lyase family protein	NA	NA	NA	NA
WP_157871078.1\|3708111_3709056_+\|transposase	IS630-like element ISGdi6 family transposase	A0A1V0SCG6	Indivirus	3.1e-09	25.6
3707257:3707312	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3733642 : 3787222

Bacillus_virus(18.18%)

tRNA,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012228348.1\|3733642_3734065_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_012228349.1\|3734101_3734266_-	hypothetical protein	NA	NA	NA	NA
WP_012228350.1\|3734357_3735122_-	S24 family peptidase	NA	NA	NA	NA
WP_012228352.1\|3735453_3735729_+	hypothetical protein	NA	NA	NA	NA
WP_012554404.1\|3735733_3738250_+	topoisomerase	Q9JMN6	Wolbachia_phage	3.7e-09	38.5
WP_041249578.1\|3738542_3739400_+	hypothetical protein	NA	NA	NA	NA
WP_012228356.1\|3739415_3740417_+\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_157871079.1\|3740456_3742517_+	EAL domain-containing protein	G3MA91	Bacillus_virus	4.4e-16	30.0
WP_157871080.1\|3742680_3743814_-	hypothetical protein	NA	NA	NA	NA
WP_144880236.1\|3744249_3744744_+\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	3.7e-14	42.5
WP_012554408.1\|3744824_3745049_+	hypothetical protein	NA	NA	NA	NA
WP_012228361.1\|3745074_3746568_+	hypothetical protein	A0A1B1IVN4	uncultured_Mediterranean_phage	7.1e-101	41.9
WP_012554409.1\|3746569_3746815_+	hypothetical protein	NA	NA	NA	NA
WP_012554412.1\|3749088_3749502_+	co-chaperone GroES	NA	NA	NA	NA
WP_162098028.1\|3749390_3750110_-	hypothetical protein	NA	NA	NA	NA
WP_041249580.1\|3750069_3750456_+	hypothetical protein	NA	NA	NA	NA
WP_012554415.1\|3751050_3751647_+	hypothetical protein	NA	NA	NA	NA
WP_012228365.1\|3751659_3752568_+	hypothetical protein	A0A218MME7	uncultured_virus	2.0e-58	40.5
WP_012554416.1\|3752677_3752860_+	hypothetical protein	NA	NA	NA	NA
WP_012228367.1\|3752924_3753341_+	hypothetical protein	A0A218MLF9	uncultured_virus	2.7e-10	37.0
WP_041249581.1\|3753351_3753828_+	hypothetical protein	NA	NA	NA	NA
WP_012228369.1\|3753824_3755711_+	hypothetical protein	A0A0E3M2T0	Rhodoferax_phage	1.7e-06	40.9
WP_012228370.1\|3755717_3759350_+	hypothetical protein	A0A2I7RQ21	Vibrio_phage	1.0e-60	35.9
WP_012228371.1\|3759349_3759985_+	hypothetical protein	NA	NA	NA	NA
WP_012228372.1\|3759984_3760443_+	hypothetical protein	NA	NA	NA	NA
WP_157871081.1\|3760439_3761441_+	hypothetical protein	NA	NA	NA	NA
WP_012228375.1\|3761547_3763080_+	hypothetical protein	NA	NA	NA	NA
WP_041249582.1\|3763231_3763576_+	hypothetical protein	NA	NA	NA	NA
WP_012228379.1\|3763572_3764049_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041249583.1\|3764045_3764762_+	hypothetical protein	NA	NA	NA	NA
WP_012228384.1\|3764810_3765560_-	YfdX family protein	NA	NA	NA	NA
WP_012228387.1\|3766756_3767230_+	hypothetical protein	NA	NA	NA	NA
WP_012554426.1\|3767229_3767712_+	hypothetical protein	A0A2I7S7C4	Vibrio_phage	1.4e-10	35.4
WP_041249584.1\|3767974_3768715_+	hypothetical protein	NA	NA	NA	NA
WP_041249585.1\|3768891_3769725_+	hypothetical protein	NA	NA	NA	NA
WP_012228391.1\|3769663_3770506_-	DUF3667 domain-containing protein	NA	NA	NA	NA
WP_012228393.1\|3770717_3771206_+	bacterioferritin	NA	NA	NA	NA
WP_041249586.1\|3771259_3771946_-	hypothetical protein	NA	NA	NA	NA
WP_041249587.1\|3773274_3774558_-	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	1.8e-44	31.5
WP_041249588.1\|3774780_3775773_-\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_012228402.1\|3775859_3777158_-	hypothetical protein	NA	NA	NA	NA
WP_012553437.1\|3777308_3778133_-\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012228403.1\|3778152_3778965_-	hypothetical protein	NA	NA	NA	NA
WP_012228404.1\|3778961_3779612_-	hypothetical protein	NA	NA	NA	NA
WP_012228405.1\|3779705_3780698_+\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_012228409.1\|3781008_3782121_-	metallophosphoesterase	NA	NA	NA	NA
WP_012228411.1\|3782213_3785138_-	EAL domain-containing protein	G3MA91	Bacillus_virus	8.1e-16	32.7
WP_012228416.1\|3785152_3786310_-	GAF domain-containing protein	NA	NA	NA	NA
WP_012222260.1\|3786385_3787222_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010125

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection