CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010544	Candidatus Phytoplasma australiense complete genome	2 crisprs	cas3,DEDDh	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_010544

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CRISPR-Cas detection and classification

Crispr_ID: NC_010544_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010544_1

560845-561013

Orphan

Consensus_repeat	Method
TTAATTCTTCAAGAGTATAGCC	PILER-CR

2 spacers

The CRISPR arrays of NC_010544_1

>merge|NC_010544|1|560845-561013|PILER-CR
TTAATTCTTCAAGAGTATAGCCGCCTTTTTGGAGTTCTTTGATGTTGCTGCCTGCATTTCTCAATTCTTCCAGAGTATAAATGGTTTTTAAATTTTGCAGTTTGATTCCTGCGAATAAAAATTGTTCCAAAGAAAAACCTTTTTCTTTTAATTCTTCAAGAGTATAGCC

>NC_010544|1|1|560845-561013|PILER-CR
TTAATTCTTCAAGAGTATAGCC	GCCTTTTTGGAGTTCTTTGATGTTGCTGCCTGCATTTC
TCAATTCTTCCAGAGTATAAAT	GGTTTTTAAATTTTGCAGTTTGATTCCTGCGAATAAAAATTGTTCCAAAGAAAAACCTTTTTCTTTTA
ATTCTTCAAGAGTATAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010544.1\|WP_012359019.1\|555180_555537_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NC_010544.1\|WP_012359026.1\|564062_565106_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|274090
NC_010544.1\|WP_012359031.1\|569969_570326_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_010544.1\|WP_012359030.1\|569570_569918_-\|hypothetical-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359015.1\|550677_551286_+\|hypothetical-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359023.1\|557806_560305_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_010544.1\|WP_012359032.1\|570343_571336_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_010544.1\|WP_012359017.1\|552631_553852_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|131034
NC_010544.1\|WP_081475358.1\|562892_562997_+\|DUF2963-domain-containing-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359028.1\|567017_567686_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_010544.1\|WP_012359022.1\|556690_557803_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_010544.1\|WP_012359029.1\|567715_568738_-\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
NC_010544.1\|WP_012359027.1\|565174_567031_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_010544.1\|WP_012359018.1\|553864_555112_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_010544.1\|WP_012359021.1\|556339_556615_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NC_010544.1\|WP_012359033.1\|571364_571751_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_010544.1\|WP_081475350.1\|549091_549247_+\|hypothetical-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359020.1\|555569_556304_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_010544.1\|WP_012359034.1\|571766_572132_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NC_010544.1\|WP_012359016.1\|552176_552620_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|143480

Protein	Function_ID	Function_description	E-value
NC_010544.1\|WP_012359019.1\|555180_555537_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.3936e-58
NC_010544.1\|WP_012359026.1\|564062_565106_-\|molecular-chaperone-DnaJ	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	1.41805e-136
NC_010544.1\|WP_012359031.1\|569969_570326_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	9.36941e-55
NC_010544.1\|WP_012359017.1\|552631_553852_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.99469e-149
NC_010544.1\|WP_012359023.1\|557806_560305_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_010544.1\|WP_012359032.1\|570343_571336_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	2.32508e-128
NC_010544.1\|WP_012359028.1\|567017_567686_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	9.27869e-44
NC_010544.1\|WP_012359022.1\|556690_557803_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	6.17794e-178
NC_010544.1\|WP_012359029.1\|567715_568738_-\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.75592e-105
NC_010544.1\|WP_012359027.1\|565174_567031_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_010544.1\|WP_012359018.1\|553864_555112_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	6.6409e-176
NC_010544.1\|WP_012359021.1\|556339_556615_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	4.54903e-34
NC_010544.1\|WP_012359033.1\|571364_571751_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.81497e-82
NC_010544.1\|WP_012359020.1\|555569_556304_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	5.41036e-134
NC_010544.1\|WP_012359034.1\|571766_572132_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	7.91771e-73
NC_010544.1\|WP_012359016.1\|552176_552620_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|143480	cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.	3.42251e-31

>NC_010544.1|WP_012359023.1|557806_560305_-|preprotein-translocase-subunit-SecA
MFKFLKKIFNSSKKALRKARVIANKVQNLTETMSLLKDQDFVVKTNELKQRYQKGETLNQLLPEAYALVREATKRVTGLTPYYVQILGAIILHQGNIAEMKTGEGKTLTAIMPAYLNALSGDPVHIVTVNEYLAKREFEGKIGEVFLFLGLSVGINIKDNNTEEKQKAYLCDVLYTTNSELGFDYLRDNMEIDANNLVMKRPYSYAIIDEVDSILIDEARTPLIISQSAKETKNLYKEANRFVKTLKSKHYLIELESKTIELTEEGINKAESFFQIKNLYDVQHSSLLHHIKNALKAFFTMHKNKDYLVNQNQVLIIDQFTGRVLKGRQFSDGLHQALEAKEGVLIKEETSIGATITYQNFFRLYHKLSGMTGTAKTEEDEFRDIYNMEVIEIPTNLPMIRVDEPDFIFVTIQEKYDALIKTTLERHKLGQPILIGTTTVEVSEIISKKLAKNFIKHEILNAKNHFKEAEIIAKAGLKNSVTIATNMAGRGTDIRLGEGVADLGGLAVLGTERHESRRIDNQLRGRAGRQGDPGYSRFFISSEDELAQRFGGKRIEKIISLLQQINTSGKETSSKMVTNFFTKIQKKVESSNFDYRKYLLKYDDILRIQREIIYDQRKGILNSPHPEKIALNLMEKTINQAVVPFFTNTKKTNQPEELILFLEKSFFPKGTFDLKEVQAIFEQSPNTALTEFRKYLSNKMTVILEQQKDSFEKENNDINFFDQVIRWFMLKIIDNYYKRHINDMSVLRQGVGFVGYGQQDSFIEYQKEGQILFNKMVDQIVMDITTAILRFPLPQSFQTPPQQEKMILNDNNSDNNITKRRRKVRISKKPWN
>NC_010544.1|WP_012359022.1|556690_557803_-|peptide-chain-release-factor-2
MEKYEINQHLENIAQNLRDLKEAINLSQSYQTLNQINELMQKKDFWDDPKKAVATSQKFNDLQEKINTLKHLETNHQDLVTFLDLESNQNNETAFLEEEIKKLIDAVLNFKIKVFLNQPYDNNNAILIFHPGAGGTESQDWCEMLFRMYQKYAQKKNFKTEILDYQSGEEAGIKSATLLVKGAYAYGYLKAEKGVHRLVRVSPFDTNAKRHTSFVSCDVLPEIKEKIKIDLRQEDLKFDFFRSSGAGGQHVNTTDSAVRITHLPTGLVVSCQNERSQNQNREKALQMLKIKLFQLADKKQKEEHAKNFQGEQKEIGWGSQIRSYVFHPYKMVKDHRTNQEIFQLEQVMDGNIDVFINGYLTKIPFVKNNL
>NC_010544.1|WP_012359021.1|556339_556615_-|30S-ribosomal-protein-S16
MAIKMRLQRFGVHKRPFYRVVASDSRVTRDGKFLDIVGTYDTILNIIKLDNEKVQKWLSCGAQPTQTVKKILKKNFVFQKDNQIKKPQTAK
>NC_010544.1|WP_012359020.1|555569_556304_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MIIEIVTIFPLFFKSFCDNSIIKRALNQQKVQIKIHDLRKYSVNKHQQVDDCVYGGGVGMLLSFPPFFDCLQEIKTPQSKVILLSPQGKIFDQVQANNYASNTPHLIILCGNYEGVDARILKYVDQEISIGDYVLTGGEIAATVVVDAIVRLIPGVIKHESAFSDSHQQGLLKFPQYTRPQIYQNQEVPSVLLSGNHAQIENWRQKESLKITLQKRPDLLINKKLSSKEKVILEEIKQELKNNS
>NC_010544.1|WP_012359019.1|555180_555537_-|50S-ribosomal-protein-L19
MSQLKGQGLIESVTQNQLKEVPFFKPGDTVKVFIKIEEGNRKRIQIFEGLVIKRQGRLISETFTVRKIFAGIGIEFTFPLHSPSNEKIEVVRRGIVRRAKLNYVRNLSSKAARIKEKR
>NC_010544.1|WP_012359018.1|553864_555112_-|tyrosine--tRNA-ligase
MSFYEELKWRNLIKDSSDEKELKNLLDCKKIKFYCGFDPTSDSLTVGHLVQLTMMSLLEKQGHSPFILVGGATGLIGDPKETEERKLLSLETSLQNAKSLETQLKKILFQKKITFLNNYEWFSQLDIITFLRKYGKLFNINYMLNKQTVAKRLSSGISFTEFTYMILQSLDFHHLYKNYGVQLQLGGSDQWGNITSGLELIRKLETTSHAFGLSTPLLLNANGTKFGKSEQDVLWLDPQKTSPYKIYQYFLNLADEEVVNCLKQLTLIPKEEILELEKATLQTPQKRLAQKALANNIVNLIYSQKVLQECHKTNEVLFLNKKKESFQEADFTLLNKTLFSYETSLVSIPLSEALVKTQLTTSKREAREFIQRGSIQIFNEKIKNPDYLIDKKNTLFNKYVLLKKGKKNNSLIILN
>NC_010544.1|WP_012359017.1|552631_553852_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MEAQIVLKNPLRSLFPIFKANPKLVYFDSAATSLKPKKVIDELTSFYYNNGMANKSFAFLSSQTNLLINETRKKTAFFLNCLPEEIIFTKGTTDSLNLLAQSLGELLEEGDEIIVSELDHNSSVLPWLKQAKRKKAKIVFVPLDSNNKITVENFSKVLTKKTKIVALTHISNLLGYMTPIKEIIDLSHQQNTLVVIDAAQSAAHFPIDVKALNSDFLAFSAHKLYGPFGVGVLFGKISLLKKLKPTFFGGNSIQEFSLNDFVLNEPPHKFEAGTLNIAGIIAFKKALEFIQEIGFEKIQSIEKNIYQGIIKELEKIPEITIYNPQSLDIISFNFNHIHAHDVENFLAQENIYVKTGRCCAFLAAKKINQTSLVRISVGVYNNQEDIDILIKNLKKARDFFIKCAKK
>NC_010544.1|WP_012359016.1|552176_552620_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MLEINKLYRDIIMKHYQEPQNWGLSQDKSFISLTHKNISCGDSIVLQIKFGGQKANQKIEDIKYKTQSCAICRASASLMSLYLKNLEINQCLNKINTFLAMINNQDLDETKIEKELLLFKHFCQFQGRRVCVALPWQALEKIIQKNR
>NC_010544.1|WP_012359015.1|550677_551286_+|hypothetical-protein
MGLITYNYLKTYENAKYLKYNIPILNKLTRPTHQIAPEVEANNVQSFVFLSSFCIMFLAGLLWAIGFYWYLSLLKFTTIILSVGWGYFFGAQYALFQMAFNIKSNYIALFFYIPFLGTLLVVGLMSYLYYSKKLVITPQKRYLIAICFIIFYFVSISLNLYRRPFSFWWIHIIILLWSILGLVISAFIWVLMLEQVDIFVEK
>NC_010544.1|WP_081475350.1|549091_549247_+|hypothetical-protein
MIAETDFNILKHQYIFKAMKQLHQDVMQLIMFLLVALNCFQNLNNFCFSFF
>NC_010544.1|WP_081475358.1|562892_562997_+|DUF2963-domain-containing-protein
MDYTIDYNPYTGNKIKLTQYKSNGTTVDYTQNYE
>NC_010544.1|WP_012359026.1|564062_565106_-|molecular-chaperone-DnaJ
MTKKDYYQVLGLNKEATPKEIKKAYLRLAKKYHPDVSQEANAEANFKEIQEAYSVLSDANKKANYDRFGHDSQTQQQGFSGFEGFEENIFNSFSDFFGTNKRSRKVNYDKKVEMTISFMDAVLGALKNIDIMVDADCQVCQGKGALSSSDIVKCRHCNGLGQVITEQRTFLGNIRSQQTCPYCRGEGEQIKNKCYSCHGSKRQKKKQSVSFQIPAGIEEGMSFQIHGKGNFPPLSNQAGDLYINFKIRPHESFVRKNQDIVLEIFINVPEAVLGTNKLIPTIYGEVNLKIPSGIQSGNKLRMKNQGIAYLNSSYRKGDQYVVVHVKIPSSPTLEEKRLYLKLLQLSN
>NC_010544.1|WP_012359027.1|565174_567031_-|molecular-chaperone-DnaK
MAKSNKIIGIDLGTTNSCVALMEGGEAKVIPNAEGGRTTPSVVSFKGNDIMVGEIAKRQVITNPNTISSIKRHMGEANYTVDVNGKKYTPQEISAMILTNLKKTAEDYLGAEVTDAVITVPAYFNDAQRQATKDAGKIAGLNVKRIINEPTAAALAYGADKSNKEQTILVFDLGGGTFDVSILDLADGTFEVLSTSGDNALGGDDFDLRIVDFLVKEFKKDNGVDLSKDKMAMQRLKDVAEKAKKELSGVTSSQISLPFLTMSASGPLHLEYNMTRAKFNELTKDLIDRCLGPVKRALSDAKLTIEKIDQVLLVGGSTRIPAVQELVKKELQKTPNKSINPDEVVAIGAAIQGGILAGDVKDILLLDVTPLSLGIETLGNVFTKLIERNTTIPTSQKQVFSTASDNQSAVDIHVLQGERPLAADNKTLGQFRLTDIPPAPRGIPQIEVTFDIDANGIVSVKAKDLGTQKEQKITISGSGALKEEEIKRMIREAEENAEADRVKKEGIDARNEADNMIFLTKKSLDDLKAEVTPEEKEKVEKQIQELETALKGEDISLIKEKTASLSKESQGIAMKAYQKAQQQQQNQNEANPEQPNSSDKDKKDGVDEVVDADFEEKK
>NC_010544.1|WP_012359028.1|567017_567686_-|nucleotide-exchange-factor-GrpE
MLFEEKEEKNNCQACDVCDDNEKNATPTEETKKKLNSDCDCTHQDNTQTEKKPSSKTIVKLKEQINKLTLQLEEQKKAFADASLKNQAELINFKKRLQKQKIQELKYASSNLISDLLVPLEQLEKALEISTDNELLKKYLLGFQMIQQQIKNILKEEGVEEIQALNAVFNPALHNALEKISEPEKPNKTNLKVLQKGYLYKEKILRPAMVQVNEWSNEDGKK
>NC_010544.1|WP_012359029.1|567715_568738_-|heat-inducible-transcription-repressor-HrcA
MLSDRKKIILKAVVESYSQKRQPVGSKSLIHLPELQFSSATIRYDMLKLEEEGFLKKNHTSSGRIPSFKGYTYYLTHLLTRDYDAANSFPLIDKVIQNKTFHKNKVIKEAIKLLNSLTSYTAMAIGPDVFNNSKISKIDFIPLNHKQALILIITNKGDVQHQNISLDQTKEISIYDLKDIVKIISDLLVGKYLSEAVKIIQSDFVKQTIAKYIRFQEQLIALFIEAFSSFASENTYFAGISEMTKKKEFSDLELIKKIMNLLERKELLKILLNQEGLSFKLSDELQLTPVKDYMILSIPFAIDANEKGTIAILGPSWMKYPKIIPLLEYLSIHLSKLNQE
>NC_010544.1|WP_012359030.1|569570_569918_-|hypothetical-protein
MKAIILIKKLKKYFKILRMLFLIVKKIGLTYFVVGLFFVLKTKKIIFKIFSKTVFKGEKIINEAKKISQEFYYYTLKKDFSLISGLKKILFFLFRNSFVRTIFVLDSRIDFNILR
>NC_010544.1|WP_012359031.1|569969_570326_-|50S-ribosomal-protein-L17
MPFSKLGRNKSQRRALLRTLMTDLIVNEQIITTESKAKELQRLADKMITLAKKGTLHTRRQAARHLFDEKINEETTVLQKLFQKLASQYLNCQGGYTRVIKTVPRRGDAAPMAIIAFA
>NC_010544.1|WP_012359032.1|570343_571336_-|DNA-directed-RNA-polymerase-subunit-alpha
MKNLKFIKPFFVEELDEKLTSGKFIFYPLVKGHATSIGNSLRRTLLSSLPGTAIVNVSIEGVEHEFTTISGVYEDVMTIILNLKKIIFKVDDESNDFEEKLKISLSGPQKITAASFGLPEGVKIINPEAPIATISSDINFNMTATIKKGIGYVSAKDNKVHSENQLGVIPIDSLFTPVVNVAYQVEKKIGNKEELTMEITTNGALLAKEALATAAKILVEHFNVVSELSQQTPNVEFVSERKPEAHNYFLDLEIEQLDLSVRLFNSLKRAGINTVADLVKLSEREVVKLKSLGRKSFQELKDKFVEYGLEFNDCLKEALHNSDEEEKETN
>NC_010544.1|WP_012359033.1|571364_571751_-|30S-ribosomal-protein-S11
MARRKTTKRKVKKNVPFGIAHIHTTFNNTIVTITDANGNAITWSSAGALGFKGSRKSTPFAAQLAAEAVAKAAMEHGMAKIEVFIAGPGPGREAAVRSLQAAGLEITAIKDVTAVPHNGCRPPKSPRG
>NC_010544.1|WP_012359034.1|571766_572132_-|30S-ribosomal-protein-S13
MARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK

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Crispr_ID: NC_010544_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010544_2

867291-867398

Orphan

Consensus_repeat	Method
TTTGTTTGGTTAATTTTCCTGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010544_2

>merge|NC_010544|2|867291-867398|CRISPRCasFinder
TTTGTTTGGTTAATTTTCCTGTTTCAGAGTTATATTCATATTTAATGGTTTCCTTAATTGTTTTGCCGTCGGATAAGTAATTTATTTGGTTGGTTAATTTTCCTGTTT

>NC_010544|2|1|867291-867398|CRISPRCasFinder
TTTGTTTGGTTAATTTTCCTGTTT	CAGAGTTATATTCATATTTAATGGTTTCCTTAATTGTTTTGCCGTCGGATAAGTAATTTA
TTTGGTTGGTTAATTTTCCTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010544.1\|WP_012359252.1\|852987_854349_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_010544.1\|WP_012359247.1\|845289_845523_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NC_010544.1\|WP_012359246.1\|842797_844462_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NC_010544.1\|WP_012359260.1\|872549_873464_-\|hypothetical-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359253.1\|854367_855363_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_010544.1\|WP_012359248.1\|846474_847299_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236353
NC_010544.1\|WP_012359259.1\|871767_872364_-\|DUF2963-domain-containing-protein	unknown	unknown	gnl\|CDD\|314179
NC_010544.1\|WP_012359250.1\|849202_850018_-\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
NC_010544.1\|WP_012359261.1\|874558_874975_-\|transcription-antitermination-protein-NusB	unknown	unknown	gnl\|CDD\|273891
NC_010544.1\|WP_012359262.1\|874967_875579_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_010544.1\|WP_050809399.1\|869891_870974_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_010544.1\|WP_012359254.1\|855517_858328_-\|hypothetical-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359257.1\|867433_868447_-\|DUF2963-domain-containing-protein	unknown	unknown	gnl\|CDD\|314179
NC_010544.1\|WP_012359263.1\|875622_876963_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958
NC_010544.1\|WP_012359264.1\|877073_877448_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NC_010544.1\|WP_081475354.1\|852758_852914_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236780
NC_010544.1\|WP_012359249.1\|848016_849186_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|226138
NC_010544.1\|WP_012359265.1\|878470_878659_+\|hypothetical-protein	unknown	unknown	unknown
NC_010544.1\|WP_012359251.1\|850501_852532_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591

Protein	Function_ID	Function_description	E-value
NC_010544.1\|WP_012359252.1\|852987_854349_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_010544.1\|WP_012359247.1\|845289_845523_+\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	1.18071e-18
NC_010544.1\|WP_012359246.1\|842797_844462_+\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	1.60572e-170
NC_010544.1\|WP_012359253.1\|854367_855363_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	7.99023e-146
NC_010544.1\|WP_012359248.1\|846474_847299_-\|ATP-binding-protein	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	3.35356e-34
NC_010544.1\|WP_012359259.1\|871767_872364_-\|DUF2963-domain-containing-protein	gnl\|CDD\|314179	pfam11178, DUF2963, Protein of unknown function (DUF2963). This family of proteins with unknown function appears to be restricted to Mollicutes.	2.5649e-05
NC_010544.1\|WP_012359250.1\|849202_850018_-\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.60382e-104
NC_010544.1\|WP_012359261.1\|874558_874975_-\|transcription-antitermination-protein-NusB	gnl\|CDD\|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	1.22937e-27
NC_010544.1\|WP_012359262.1\|874967_875579_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.0725e-89
NC_010544.1\|WP_050809399.1\|869891_870974_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.89552e-26
NC_010544.1\|WP_012359257.1\|867433_868447_-\|DUF2963-domain-containing-protein	gnl\|CDD\|314179	pfam11178, DUF2963, Protein of unknown function (DUF2963). This family of proteins with unknown function appears to be restricted to Mollicutes.	3.16175e-06
NC_010544.1\|WP_012359263.1\|875622_876963_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	1.15816e-146
NC_010544.1\|WP_012359264.1\|877073_877448_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.23234e-24
NC_010544.1\|WP_081475354.1\|852758_852914_-\|hypothetical-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	6.06956e-11
NC_010544.1\|WP_012359249.1\|848016_849186_-\|replication-initiation-protein	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	6.19997e-29
NC_010544.1\|WP_012359251.1\|850501_852532_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	2.5801e-127

>NC_010544.1|WP_012359254.1|855517_858328_-|hypothetical-protein
MNLSKRPFFKKINLYLLSLFMLLSVGMSVFAEGLTQLPNFLKPAATTQITLTEAQITKPQDQDVLNLFVAEGKTVAINDVTISLNNNQLTVAPVSGSTRYQGSVVYNLAPQQLDTVLNPDSIQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGSVVYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGNVVYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGSVIYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGNVVYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGSVVYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGNVVYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGSVVYNLAPQQLDTVLNPDSTQPNLTPEQRNNPNTEAVLGLVRLSNDNPVVTNADVTISLNNNQLTVAPVSGSTRYQGNVVYNLAPQLPNVLKPAATTQIELAENERTNLQSQSVLDKIKKATDSQVQLEDVKITLIDNNKKLQVKALATSSYQGEVIYNLQQTQASELSNVLEPSTVPRKVTLPSLENLDTEANKKAVLEQIAKDQTLTLNDVTITFDNDKKTVTVATKEETKNFKGQVVYGIQQAPPSSILTPPTKTYFWSWTLLIVLVVALISGSGYYYTQGKKNPNPKSTKR
>NC_010544.1|WP_012359253.1|854367_855363_-|signal-recognition-particle-docking-protein-FtsY
MFQWFKNKFFKKKNSDKYQLGLAKTKGNFVNFETLLKEAKNIEESLLSALENILIESDFGVKTTLFLMQSIKNYLNQSNIKEARQLPSIIIKHLLHLYQDSSKQSQTPILNTNSKTTLTDPQMYLFVGVNGVGKTTTIGKMATKLRQEGKKVLLVAGDTFRAGAVEQLKIWGNWSQTEVFAKEGTLFPSPSSVIFEGLQYAKKNAYDVVLCDTAGRLQNKANLMQELAKIQRVILKHLNPENLQSFLVLDANTGQNALNQVELFNEAVPLTGAIITKLDGTSKGGIVFAIKHLYNLSIKFIGLGEKPEDLVDFDIQNYLFHLFNNFFLKNI
>NC_010544.1|WP_012359252.1|852987_854349_-|signal-recognition-particle-protein
MSILGDGFQKIINKIRGKKIIESRDIENIMEDIRLSLIEADVNIKVIDTFHELISKKSLKQEVLKGLKPKEHIIKIINETLTQILGSTRSDLVVQPKPHLNAMMLIGLQGSGKTTTAGKLALWLRKKNHQKVLLIACDIYRPGAVEQLKVIGRQIKIDVFSQGNTPVIEIVELGLQYAQKNGYDAIVIDTAGRLTIDEKMMQELKEIKSKCDFSEVLLVIDALTGQQSAKNTQTFHQQVGATGVILTKMDADTKGGASLSVRVMTELPLKFISSSESIDLLEPFNPDRMASRLLGMGDVLTLIETVTDKIDADQGKKMMDRLLDDNYNYHDFQKQLKTLKKIGSFSKILSFIPGLGNKMKQLSSGINDDNLKKFEVLIQSMTKEERKKPRLIALSGRRRMRIAKGSGNQLSDVSQLMTLLEQQKKLAKQMKNFDDADINKLQEDPLSFFNHLK
>NC_010544.1|WP_081475354.1|852758_852914_-|hypothetical-protein
MKQLSSGINDDNLKKFEVLIQSMTKEERKKPRLIALSGRRRMRIAKVLSIN
>NC_010544.1|WP_012359251.1|850501_852532_-|DNA-polymerase-I
MQHLVLVDGNSLVFRAYHATANNGKKLLQNKKGVYTNALLSFIKMFEKILEQTKNYILVAFDTHHPTKRHQMYDNYKKGRPETPQELIDQIPLIKKYLTLKGVKHHFQAEFEADDIIGTLAKMASNKNIKVSIYSSDQDLLQLVDTNTSVYLIKKGLKLIKHYNPKTLLEEYGLKEYQMIDYKALMGDSSDNIKGVAGIGPKTAKNLLQTYDNLDNLLSHLDAIKPSLKEKINNCMEDLKLSKILTTIDTKVPLPFELEQTEIKHMSSFELQDFYQEMDFKRLKITPNTSLKPDLTQNFIYQNIDQNQALEHVIQTITEEQTWSLYFEFDLHYKSILGIGFSCGSNHNFFLDPDIALANQFFISYLKNPAFSKNVFNTYQTQLFLKHKGIIIEGICFDLLPAAYLLFPLESDNLIDLLTKTDLLGDYELNHVNLEKKTAIKAFLFHQSKEHVLKLLQTNNQLFLFHEIELPLASVFAKLENCQTSLPYYLFNNKPFLNEFPKVTLKTLAFLGNVKKIKAFFASKNQVMKEQQKITFFGLDTTNYRQDFSLPNYFDDMINDIAQELNISLSNANIIINQYLTVDGDITCFLDKLLQQIKEHQYLETFWKRKIFCFSLPFLDKKKHPLSLLFLFLQANILDLQKIAFLQLFRHLKPINQLKQNIPLIAKACNPFLEIF
>NC_010544.1|WP_012359250.1|849202_850018_-|DNA-formamidopyrimidine-glycosylase
MPELPEVQIIVNILKSKLIGAKIIKTKVFYAPVIKNFEAFSQIEEKTILDIQRKGKFLLFFLTQKLVIIGHLRLEGKLFLKPASNPHEATEHFVLFFDNDLSLRYYDFRKFGRFEVQNQKDFLTKTTLNQLASDPFEIDFMTFYQKVVKSKTALKKVLLNQKIISGLGNIYVNEVLFLAKLHPETKACDLNPSQVQNILEIAKKVLKKAIFFGGSSISTFEPEEGTKGSFQNHLLVHGKQKIPCTVCMTNIIKIKVGGRGTYLCPSCQPIK
>NC_010544.1|WP_012359249.1|848016_849186_-|replication-initiation-protein
MISNRFTLFKIKNQISLSFEDHQTLSLLYQPLIGAQALSIYYILLSLKANFEYQHQFLFDIAFISEDVFLEQKEKLEALNLLATYQKENPRETIYLVFPPYKSNAFLQDPLLGDFLLSEMGEKNYFHLESHFLLKPLNLEGFQDISKKFDDIYQFEKINFNQNIQQHKTMNPFDKSFLQSNFDYEAFLSSLPERFKKTFLVESQTIDFINKLSLVYNLTPQKIAEIYQNTFPNPNDIDLSKLRLNVKKNYHQNNKEQIIISSKKTGYNEEEMITFLKKPNATQRIIKGYCQKSNQTIASDTVFQLLERNDLEIGLVNALLIYILRYHNGILPSVVYLEKTLKSWSQKGILDAETAYDFLMEEKTEKQVNFKKPKDKPKWIDEIKKNWQS
>NC_010544.1|WP_012359248.1|846474_847299_-|ATP-binding-protein
MSLSDIKKEIRKKLAQNPETKDLKIDDDDLLTYYNYYKNKTKEHQNETFFRPELKKKPFPRVVLVPTVQSNKMQFQENCKKINALFDSELELEQYSLSKLIVDSEIKKQVYKEMQKVIKNFNKVNKGFYLCGSFKTGKTFFLKALAKQLLQKEISVLFLFMPNLTRKFKALVYSNLLETRFYQLKTTDCLFLDDLGAENINPWFRDEILLPLLYYRAERKLPVFISSNYNFLQLDKHLIGNVAYNDNSYVKIHKIIDKINELTKFYDFSKKETS
>NC_010544.1|WP_012359247.1|845289_845523_+|cold-shock-domain-containing-protein
MQDQRQQGTCRWFSGDKGYGFIVSAEGKDVFVHYSSIQTEVQGRRTLNKDDKVEFSIKEHDNRIQAVDVVVINDREE
>NC_010544.1|WP_012359246.1|842797_844462_+|DAK2-domain-containing-protein
MMKEKKMKKNKTITNIDGILFQKMIINGAVNLHNNYHKIDNLNVFPVPDRDTGTNMKITMMSGVEAIKNLKNDSIVEVSQILSKALLLGAKGNSGVILSQFFAGMGETFAKLQKNSIHLEEFMQSLENGYKKAYQAIIKPTEGTILTVFRLAVEKTSEQKNKFTSIIDLIELFLNNAKEALKQTTNLLAVLKKAGVVDSGGAGFVEILKGWLHFFKENQMIELKDTSIKTETAHHIHHLGEVDIKYIYCTEYVFELKNNDCDTEELGAYFETKGDSLVLVKDEEILKIHIHTNCPGTILEKLLNYGNLKISKIDNMKEQHQKIIDEKPTSEKKQHSLIVFVKDAKMEKLLSDFEINYIIPQKDFTKEALLKVINQIDSPYIFIFPNNLETLNELKKNTILSQKDQKIIIAPSKNIAQTYSALLAFDPSLDWDQNQEMIENTIKNIQIGEIIAADKMNEKLAINKEIDIAKESYLSIYEGEVVAAKPNKYEAINTLLKKMIKPCQSFLTIFYNSSVTNTHELAEIEKYLKKNYDHLELEILANEGVEAAYILSLE
>NC_010544.1|WP_012359257.1|867433_868447_-|DUF2963-domain-containing-protein
MTPTISITPSRIREEFGTSPKTFYDETGRQCYYSYNKGLIYDTWWLDDQKFSSDLFNPISYNHYMSDISINHYYNTNKPPIKPGVPQDYDFNCDSPIPYILNCIKYKYNEARKKIQDIYYKPDGTTIDYTIDYDPQTSKSINQTNYKSDGKTKDVIFEFNQTGQKTKKINYKSDGQTIDSITESDPKTGKKANQTYYHIDGSKTIEEFSPQTGRLIKTTYHHKDGSKFITDFDQTTSKQIRYTQHNKDGLLWYTYNYDPQTANRTKYTHYKPDGKTVYYIIEFNRETSNQSELTEFDSKTGNKIKYTKYYEDGKQTKYTIEFNYQTKKPNPRNSVQP
>NC_010544.1|WP_050809399.1|869891_870974_+|Fic-family-protein
MQLLIKKGLQILKIFDYNKLKDLKIPHDIANILNNISQYQGRLGLFIQQNKLKSLDNLMMQSKIFSIESSNKIENVFTTNKRLKELSINKIKPINRNEEEIVGYKNVLDIINENFDSIEIKPNYILQMHRILYDYTNIDGGTYKKTQNYITQTLANNETKIRFTPIEPYLISIKMEELCNTFQENFNKPQTNNLILIFNFIFDFVSIHPFTDGNGRIQRLLMTLLLYKTNHVIGKYISLDKIIESSKETHYETLLSSSYNWHENTNDTTPFIRYMLGILLNAYKTFERAVIFPHLQKLTAKQQIELVFKNTLLKMTKAKIIELLPHISQTTIELYLNQLLKEKYITKINNNKFSYYIKNK
>NC_010544.1|WP_012359259.1|871767_872364_-|DUF2963-domain-containing-protein
MMLQLIQYWSPEAIIYLLDVINEALERLPEEQQFFRANRTLENILKTIVSVFARTRSEGNTRRALINKEDLKKAYKMIISQDIQDVNVLNEIENSNEKNNQSNTTINPDKSKRIREYDLKKQLIKSTYCKDGTHNTFIYEYDPQTRNKIKYTQYQPDGIKLDYIEDFDPKTRKKTKHTQYKANGERDCIKEYDHKQEK
>NC_010544.1|WP_012359260.1|872549_873464_-|hypothetical-protein
MKKTTKVINAVIVFFITSIFVSVFVLALNNFSLYDQTVLDIRLQNGLTVTSKITKYTPYGKILIPDTYLQDKEQTEYTSENSTSEIDYYFDVTLELNGFDVGTDIYLKIQEDIKIVEFGQEIAIGSDKYDFSKSCTIKIYEPKKYDPEKNKICDLKTNQQEEEWEEFNPYKIINKWEKYDEKNPPMIYKYDKNKPPQKDDKVTYKLKANFKYHKLPEFKEKDPQDTTNLDFQLYFDIKCTPVYKEGEEFKEFYDPENKPKLSQEQSIKLANQKTQDRSNLNTNTSNHHSNPKKQTFLAILLPPF
>NC_010544.1|WP_012359261.1|874558_874975_-|transcription-antitermination-protein-NusB
MNNHKRFKKSRLLRIKMMKLLYQYDFYSNNLKKISQEKLQSDFEKIIMKLPFIDEIIINNLYNYKLNRLNKVDKAIIRLATFELLENKTPYALIIDEAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKETTKETF
>NC_010544.1|WP_012359262.1|874967_875579_-|superoxide-dismutase
MQFSLPPLNFKYDALEPFLDKKTMELHYSKHHQTYVNNLNDSLKKHPQITLSLREMLTDLSLVPQDIRQTCRNNGGGHLNHSFFWNILKLNHGQGPQGILKDLINRDFGSLETFKNNFANTAKTIFGSGWAWLILNRKGRLEITSTFNQDVVFNQGEPLLALDVWEHAYYLSYQNRRVDYIEAFFNVIDWNQVETNLKNHYNE
>NC_010544.1|WP_012359263.1|875622_876963_-|FAD-dependent-oxidoreductase
MKVIIIGCTHAGTAAAKTIKKTSPQTDIVVYERNDNISFLSCGLALYVGGVVKDSRGLFYSNPEELIHMGINTKLQHDVLKIDFEKKEVLVCNLETKQEFKDNYDKLVIAAGSWPVVPPIEGIHSKNVLLSKNFNQAKEIISYSQKVNKITVVGAGYIGVELAEAFALRKKEVVLIDAETRIMPKYLDEEFTDVAQKELTDHGVKLALGQRIVGFETKDGLVTKVKTDKDTFETEMVIMCIGFKPNTKLFNQALKTLPNGALIVNEYMQTSNPDVYACGDCVNVYSNPKKITQYIPLATNAVRMGTLVGLNLMKNQVKYLGTQGTSGIKIIDLNISSTGLTETVAKELGKNYDTVTIKDANRPEFMPDFETVTLKLVFDKDSRKILGGQIVSRMDLTEKINTLSVCIQNEMTVEQLAFVDFFFQPHFNKPWSLLNLAGLKALEKKI
>NC_010544.1|WP_012359264.1|877073_877448_-|holo-ACP-synthase
MNVQNIGIDLVEIKKIQKIGIQVIATRILSSQEKKIFLTFCNQERQLTFLGGRWAAKEALFKALTAQNLNNSQSNYHDWSILNDSNNAPYLENPQWKNRVFLSITHTHNYALAMVLILQKEKKL
>NC_010544.1|WP_012359265.1|878470_878659_+|hypothetical-protein
MQNKKLEEDIKKEERKIFEENKYKKSLTNEKLVFLLFNDEIMYISALYYYPKNENKKREKNN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage