CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010645	Bordetella avium 197N, complete genome	2 crisprs	csa3,cas3,DinG,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010645_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010645_1

2150628-2150849

Orphan

Consensus_repeat	Method
AGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010645_1

>merge|NC_010645|1|2150628-2150849|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCTTGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGGTAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

>NC_010645|1|1|2150628-2150849|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCT	TGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGG
TAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010645.1\|WP_012417668.1\|2141565_2144487_-\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NC_010645.1\|WP_012417676.1\|2154243_2155005_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_010645.1\|WP_012417681.1\|2158626_2159016_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NC_010645.1\|WP_012417675.1\|2152780_2154082_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NC_010645.1\|WP_012417670.1\|2147491_2148607_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277319
NC_010645.1\|WP_012417667.1\|2141219_2141564_-\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NC_010645.1\|WP_012417673.1\|2150907_2151537_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NC_010645.1\|WP_012417666.1\|2139600_2141223_-\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NC_010645.1\|WP_012417671.1\|2148647_2149949_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NC_010645.1\|WP_012417680.1\|2158093_2158534_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_010645.1\|WP_012417669.1\|2144873_2147495_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|378817
NC_010645.1\|WP_012417672.1\|2150087_2150555_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NC_010645.1\|WP_012417674.1\|2151620_2152751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235109
NC_010645.1\|WP_039052185.1\|2156705_2157194_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
NC_010645.1\|WP_012417665.1\|2139116_2139599_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NC_010645.1\|WP_012417682.1\|2159153_2159975_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_010645.1\|WP_012417663.1\|2138485_2138839_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183670
NC_010645.1\|WP_012417679.1\|2157195_2157963_+\|NRDE-family-protein	unknown	unknown	gnl\|CDD\|377554
NC_010645.1\|WP_012417664.1\|2138835_2139117_-\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NC_010645.1\|WP_012417677.1\|2155033_2156635_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651

Protein	Function_ID	Function_description	E-value
NC_010645.1\|WP_012417668.1\|2141565_2144487_-\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NC_010645.1\|WP_012417676.1\|2154243_2155005_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.72325e-86
NC_010645.1\|WP_012417681.1\|2158626_2159016_-\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	2.66067e-15
NC_010645.1\|WP_012417675.1\|2152780_2154082_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	1.04189e-103
NC_010645.1\|WP_012417670.1\|2147491_2148607_-\|metallophosphoesterase	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.5023e-32
NC_010645.1\|WP_012417667.1\|2141219_2141564_-\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	1.73102e-70
NC_010645.1\|WP_012417673.1\|2150907_2151537_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	4.07046e-27
NC_010645.1\|WP_012417666.1\|2139600_2141223_-\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_010645.1\|WP_012417671.1\|2148647_2149949_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NC_010645.1\|WP_012417680.1\|2158093_2158534_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00316822
NC_010645.1\|WP_012417669.1\|2144873_2147495_-\|AAA-family-ATPase	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	4.79243e-13
NC_010645.1\|WP_012417672.1\|2150087_2150555_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.09021e-63
NC_010645.1\|WP_012417674.1\|2151620_2152751_+\|hypothetical-protein	gnl\|CDD\|235109	PRK03187, tgl, transglutaminase; Provisional.	1.17046e-08
NC_010645.1\|WP_039052185.1\|2156705_2157194_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.24304e-77
NC_010645.1\|WP_012417665.1\|2139116_2139599_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	1.29263e-57
NC_010645.1\|WP_012417682.1\|2159153_2159975_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	8.2427e-11
NC_010645.1\|WP_012417663.1\|2138485_2138839_-\|cation:proton-antiporter	gnl\|CDD\|183670	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.27927e-52
NC_010645.1\|WP_012417679.1\|2157195_2157963_+\|NRDE-family-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	8.67362e-83
NC_010645.1\|WP_012417664.1\|2138835_2139117_-\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.13843e-36
NC_010645.1\|WP_012417677.1\|2155033_2156635_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	7.55618e-162

>NC_010645.1|WP_012417672.1|2150087_2150555_+|winged-helix-turn-helix-transcriptional-regulator
MRELDRTDRKILDILQRNGRISITELAEQVNLSATPCSERVKRLERDGVIAGYHARLNPVALGKNLLVFLEIRLSAKSGDVFDKVKKELMYVPEVMECHLVSGDFDYLVKARLTEMAEYRRLLGEILKRLPASAESHSYVVMEEIKESLYLPLDP
>NC_010645.1|WP_012417671.1|2148647_2149949_-|D-amino-acid-dehydrogenase
MHIIVLGSGVIGTTTAFYLARQGAQVTVLDRQPGPADETSYANAGQVSPGYSTPWAAPGIPLKALKWLFQKHAPLALRADGSLWQWRWMAAMLANCTADRYTVNKERMLRLAEYSRDCLRELRDSTGIQYEQRTQGTLQLFRTEAQLEAARRDIAVLEEVGVPYEVLDRDALPGAEPALARSLHKLAGGLRLPNDETGDCRLFTRALAEAAANLGARFHFNQAVEGMVLENGRVTGVRVGGEPMQADAYVAAFGSYTRGFLGPLGLDLPVYPVKGYSLTIPMRDAQASPVSTVLDETYKIAITRFDQRIRVGGMAELAGFDLTLRPQRRATLEMVVQDLFPGCGDVAAAEFWTGLRPMTPDSTPIVGATRYDNLFLNTGHGTLGWTMACGSGKLMADIVMGHQPAIRADDLALSRYQGKASPAGGLDLKQGRA
>NC_010645.1|WP_012417670.1|2147491_2148607_-|metallophosphoesterase
MSSRPPSFLHTADWQIGRQYGQFDDDDAAVLAEARLEAVARLAAIARERGVCAVLVAGDVFDTQAVSDRLIRRLFGALEGYAGPWVMIPGNHDAALAESVWTRARKLACIPANVHLALEPGVVLLPELAVLAAPLTQRHTYDDVTRGFDSLETPAGLPRVGLAHGSVTGRLPDSADAANPIAPDRADTARLDYLALGDWHGCLRVTDRCWYAGTPETDRFRGNEPGYALHVRLGGAQPEVEAVRVGRYRWQAWDVDLELPADAEMLEARLQTLQADDVLRLTLRGRVSLAAWERLTQSIGRAEAHLRALRLEPDALSLEPDDADFSLLDGGGYLSDVAARLRAMQADPQTAPVAREAMQLLLRMAREEGGA
>NC_010645.1|WP_012417669.1|2144873_2147495_-|AAA-family-ATPase
MRLHRIALQEFRKFREPVVLDGLDAGLNIIAGPNEAGKSTYAMALRAAFLERYNTSKVADLAPYGMAGARPTVCIEFEHGGRHYALQKHFLHKARCELRIDGSRLEGEEAEQTLARLLGFEIPGRGQSKPEHAGVPGLLWITQGSGQDIAEPARHADGQVREALTQISGELASTDGDRLFAQVQEARAALLDARGGKPKGVYKAAEEAYVRLGEAREALLRERAELDADVDRLAQWRAEYERAEREAPWVALEQQAAQARAQLQALAIEQERVQRLRQEANEAARLAQALRDQAARDRRDEEELRHLHAQSQAAARELAQHNDTGARMAQARVHAEAALQSARAALEAVQEQQRLRQARDWLRQACAEEERLGAALAAVQTGESQVAALLAEWQEVRIDAQAVTALRQLQREEEALRLRLEAGATRIRHLLDAGVSLSLGQQMLQGEGETLLAEAAELSLPGLGRLIIEPGGQDLPALRRERAEVQARLEQGLTALAAGSLAQAEARLAHATQLERELAQAKQALHALAPQGGAALQAALAQARQTRERLQAQLHGADLGGEADLDARLPAAKDAVQRATAAAQAAERQAREADAGQAQASSRAALLQEQYQSRQSAFDDAAQAARRALRAAQFAQAEQTEQERALQAREAESALAAHRPELLKQDAERYARSAELARQAQQERHARLLSLQGKLEQAGAQAVGEQLAETEAAWQRAGRLRADYERRAAALDLLWRLLGEQRDTATRRLLRPLSERLAHYLALLFPGADLSLDEQLQPLALVRGGTHDALEALSFGTREQLGLLARLAYADLLREAGRPTLLVLDDALVHADSRRRDLVKRALFDAATRHQILLFTCHADAWQDMGVVLRELP
>NC_010645.1|WP_012417668.1|2141565_2144487_-|monovalent-cation/H+-antiporter-subunit-A
MSLILILALPFVGSLCAALLPANARNAEAWLAGLVALGSTLLVASLYPQIAAGEVIRVDIPWAPALGLQFALRMDGFAWLFSLIVSLIGTLVVLYARYYMSPQDPVPRFFSFFQAFMAAMLGVVLSGNLIQLVLFWEMTSLASFMLIAYWHHRADARRGARMALTVTGAGGLCLLGGVLLLGHIVGSYDMDVVLRAGDIVRAHPWYPAALALVALGALTKSAQFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPLLAGTDAWFWIIGGAGLISLVLGAYAAIFQQDMKGVLAYSTISHLGLITLLLGLNSPLALVAAVFHMVNHAIFKASLFMAAGIVDHETGTRDISRLSGLYSAMPLTATMAMVAAASMAGVPLLNGFLSKEMFFAETTFITGDRFLEYGLPLMATIAGAFSVAYSLRFIVQVFFGPPATDLPRAPHEPPRWMLLPSALLVLLCLVIGVLPGLTVGPVLHIAAQSILGPGMPQFSLAVWHGFNLPLVMSLVAMSAGVLLYLVLRAHQAANPGKVPFIYRLDGRRTFEYLLEVSAMGARWLLRRASSPRLQVQMLVIVSATLLVAWMPLRVSGWLDGMGPRTPADPVFLILWLAGGACALGAAYQAKYHRLASLTLSGGAGIVTCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIVSESDDERPDWKARARRTRDLGLAALAGISMSAITYAMLTRPVGDTISSFFVEQALPEGGGTNVVNVLLVDFRGFDTLGEITVLGIVALTVYALLRRFRPAQESIEMPRQQREQDGLEPGQPPASPDVKAPLPQGVMRIPAVLVRLLLPVAVLISVYLLLRGHNLPGGGFVGGLVMATSVILQYMVGGVYWVESRSRLNPQRWVGLGLLAAGAAAMSSWFALRPFMSALAWDVHVPLIGEVHLSSVLLFDLGVYMLVVGATVLVLVALAHQSLRAQRKLVSEAQAEAAMKGV
>NC_010645.1|WP_012417667.1|2141219_2141564_-|Na+/H+-antiporter-subunit-C
MEWIYAVAVGVLVGSGVWLLLRPRTFQVIMGLSLISYAVNLFIFGMGRLTVGRPPVVDPLAPPDPGAYADPLPQALVLTAIVIGFATTALFLVVLLASRGFRGTDHVDGREPES
>NC_010645.1|WP_012417666.1|2139600_2141223_-|monovalent-cation/H+-antiporter-subunit-D
MIDWQQHLPIYPIAVPLVAGALMLLLADTRRRERAFIAVASTLVQLLSAIALLALAAGAYDIWPDGIGVYLPGDWPAPFGIVLVVDRLAAIMLTLTATLGLATLVYSLARWDRAGVHFHSLFQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLLLHGSGGARVSAGLQYIAVNLVASFLLLISIALIYGVTGTLNMADLAVRAGQLVGSDRRLFEAGAAILGVAFLVKAGAWPLNFWLVSGYGSACPPVAAMFSIMTKVGIYSLLRIGSLLLPTGAPAAFSLDWMFAVGLATLIFGGVGILASQQLEKLVGYCVIVSAGTLLTALGMPGVTLTGPALFYLISSVLGTSAFFLLVELIERTRSFGANVLAVTMDNFDLDDPASRSDDVVGVAIPAAMAFLGLAFVACALLVTGLPPLSGFVAKFSLLSAAVSAANTSAPPMDAWLLVAGVLLSGLAGLIALGRTGIRVFWSSEDRSTPRLRLLEAGPVAVLILLCVALAAGAGPVSAYLDAAAQSLDAPADYVNAVLSKQPVRVLGGGH
>NC_010645.1|WP_012417665.1|2139116_2139599_-|Na+/H+-antiporter-subunit-E
MRDVFSKMLLPLGMFFLWLLLNQSLSLGQIAFGAALAIWLGWASTRLRPLKSRPRRFYLLPGLFCRVLIDIIRSNWAVTLLIWRPRAEMSPGFLTIPLTMRDPHGIAMLACILTYTPGTVLVDISDSKGLTLHVLDLQNEDEWVALVKGRYERTLMEVFE
>NC_010645.1|WP_012417664.1|2138835_2139117_-|K+/H+-antiporter-subunit-F
MDVLLYWSASFALICFAVGLGCAVIRVLRGPTAQDRVLGLDAVYIQAMLIMLVFGIRVGTGVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP
>NC_010645.1|WP_012417663.1|2138485_2138839_-|cation:proton-antiporter
MIPADIPWWIAVPASLLLIAGGMLALTGAVGLLRFGHFYARIHAPTLANTLGACSVLLASMLVFSYQASRPVFHEVVIVILLVLTSPVTGMLLMRAAVYRNRDAEVGPNSPHNSSEP
>NC_010645.1|WP_012417673.1|2150907_2151537_+|DUF502-domain-containing-protein
MTRRLYRYFFLGLITILPIALTLYLLFVFLAWTEAIALTFVRPFIGDFYIPGLGLLLGILVILAIGYLVSKERVQRLLLLVEMPFTNLPVIKSIYSSIKSFADYFSSGSKATSQQVVILRIPGQALELVGLVTRRGMEGLPAGFLPGERVAVYLPMGYMIGGYTVFVPTEWVVPINMSVEEAMRSSLIAWMARAEHQTPPTPPHTDQPS
>NC_010645.1|WP_012417674.1|2151620_2152751_+|hypothetical-protein
MQHNDVSSFRDAGGIRIFPSSPAALSQAQAFLYSRDLQAYATSRLAPDGAVCIQALPDFARQHLPQGDTTGLVHDLKLDTAGSDAALETEIVLAMLACPVAFPFPDVAELEAALRIRRNIVRAATRTALAFDTEKAERPADYWAYDEATGFTIVPGRSLIDGLTLATQPQVSGQTYSFSCYRATEYVTVLGIALEVRDSHPALYTRLQRQWETRAVMSGRFHEAFLREYGSMDAPLPPRFYVPGDRLWFRNPDAHSSNVEGYEGSWVFYLGSGLFNNFWKRDQPYTLTHKCLEIFHWRDGAQVDAGGKLFINEDIVEARVRETQADPAARQAVLERMLRIRDPQGVYAEGGCIDATRECARWVLPGHAEIALPEFP
>NC_010645.1|WP_012417675.1|2152780_2154082_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSNLIVHGGTPLRGKIVPSANKNAVLPILCATLLTDQPLRLIGVPEITDVKKILDIFRMLGSEVSVDYATGVLELHHRDTCFDPAQHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCTLGVREIDPHVEVFERFGARVERAPDSLIARADGQMRANQHWLDYASVTTTENFALCAASAAGVSTLVNAASEPHVQEFCRFLEMLGVPIEGIGTSHLRIEGGRKLKGGEFRFDEDFHEIATFLALGAITGGSIIVKNSAPAQFPLIDRTFAKFGVEVEHRDGWSQAHSDGPLRVRRPFTQNILTKVEAAPWPYLPVDLLPIFIALGVRAEGSAMFWNKVYDGAMGWSVELSKFGAHVFLSDPHRLITFGGLPLSPAKVESPYIIRVAIALLMLAASIEGRSEITNALPIRRAHPNFVENLCSVGARVEWTHGD
>NC_010645.1|WP_012417676.1|2154243_2155005_+|DeoR/GlpR-transcriptional-regulator
MTLNPRQSALLEQVRSQGSASIEELARAFDVTLQTVRRDVNLLAEAGMLSRFHGGVRSEPSTIENITYRQRQGLHAEGKRRIAEAVARQVPDGCSLLINIGTTTEAIARALLQHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGITGEATIDFIRQLKVDIGLIGISGIEADGTLRDYDFREVLVARTIIEQSREVWLAADSSKFQRQAMVELAPISRISRFFTDAEPAPQLAQVLHDAGVHVSVS
>NC_010645.1|WP_012417677.1|2155033_2156635_+|glycerol-3-phosphate-dehydrogenase/oxidase
MNSTTSAAMPPRADLLARMDAADSWDVIVIGGGATGLGTAVDAAARGFRTLLIEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLSRNAPHLAWPLGFVVPAYTLLDQPFYGIGLKMYDLLAGKLNLASSRLLSRIETLRHASTLAPVVQGKRLRGGVLYYDGQFDDARLAVALMRTLFDLGGTAVNYVRVTGLTRDAQGKIDGVETEDTLSGARHTLHAKCVVNATGVWVDAVRRMDDPAAQAIVSPSQGVHLTLPRDFLPGDDAILVPKTDDGRVLFMVPWNGHTIVGTTDTARQDLPTDPRPLPGEVDFILETAGRYLTRQPTRADVTSVWAGLRPLVKASGDASTKSLSREHTILVAQSGLITVTGGKWTTYRRMAQDVVDTAIEKRLLPQAACRSAELPLHGAPAPGAGLLAPQGTPDSYYGTDLPVLRALPGADRILVQASGLSEAHVRYAARYELARTVEDVLARRNRALFLDAAAAQAAAPEVTRILAEELGHDADWQTRTLADFQAIAESFKLA
>NC_010645.1|WP_039052185.1|2156705_2157194_+|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MDVFQQLQNLLSAQAADFRLLRHPAAGKSVEVAAIRGTEVSQGAKALVCRVKISAKQRKHVLAVFPADGQADLDAIALAAGGKKAALATHELARELTGCEIGAIPPFSFNTELHLIVDPSLRQRHDEIVFNAGRLDASIIMRTEDYFRIAQPELARFVRTAD
>NC_010645.1|WP_012417679.1|2157195_2157963_+|NRDE-family-protein
MCLAVLALNALPGLPVLIAANRDEFHARPAAPAAAWPSGIYAGRDLLAGGTWMGAARNGHYAILTNYREVGRHLPDAPSRGKLAEHFLAGDLPARDYIASVAREGGRYNGFNLIVGDRQDAWYYGNRGGEPRLLKDGLYALSNHLLDSPWPKSLRLKHAVRQTFEHGLDLPALFAALGDRTVAEDASLPDTGLPRERERLLSSPFIVSADYGTRCSTVLLWRANGQGELVERRFDSAARLTGETALHFHLPGTVS
>NC_010645.1|WP_012417680.1|2158093_2158534_+|carboxypeptidase-regulatory-like-domain-containing-protein
MKKIHERSLLAALLMAGAMTVSGAALAQDLPLLPQTQQQGDVQFLSGGIGDGQSGAIKAAASKYRLMLTFVQRGPGGVGEYLADIPVDIVNAKGQSVLKTVAQGPFLLANLPAGSYTVKASSNGAEKSTRVTIGKSGTARAIFEWR
>NC_010645.1|WP_012417681.1|2158626_2159016_-|MAPEG-family-protein
MIHIVALMVAAALLPLVASISSKLGGEGFDNREPRLWLQAQKGWRARANAAQANSYEALPFFYAAVLFALYAQAPLAHLAVLMGAWVTVRLVYLALYVGGYGSLRSLSWVAAFALNLLILYAGLQAAGG
>NC_010645.1|WP_012417682.1|2159153_2159975_+|CPBP-family-intramembrane-metalloprotease
MTDSLTWIFIFCAYALLWWPAARKAGLALLICGLGLAATQSALTLPSLLAFALLIASGWLVRGTRQAWLGHLIFIITAIALALHLLPGFHNPLIIDSTALKPGSTPMRLYFNLDKPLIAWWVLLVMAPPFLRFGWQDSLRTGLQAGIAAAICCLGLAWVLGALAWSPGWPSQGWPWLLNNALLVTMAEEAFFRAYIQRGLALRLGPAPACLLAALLFGLAHFAGGPALIGLAALAGLFYGWAFHRGGLAAAVLAHLLLNTLHLALFSYPALAH

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Crispr_ID: NC_010645_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010645_2

3455165-3455386

Orphan

Consensus_repeat	Method
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010645_2

>merge|NC_010645|2|3455165-3455386|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCGGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGTCCCTAGGCGGGACAGCCCCCTC

>NC_010645|2|2|3455165-3455386|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	GGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCG
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGTCCCTAGGCGGGACAGCCCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010645.1\|WP_039051319.1\|3464072_3465659_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NC_010645.1\|WP_049794180.1\|3448999_3449560_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NC_010645.1\|WP_012418820.1\|3457466_3458804_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NC_010645.1\|WP_012418825.1\|3462413_3463661_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NC_010645.1\|WP_039051317.1\|3458855_3459494_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NC_010645.1\|WP_012418817.1\|3453627_3455085_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NC_010645.1\|WP_012418811.1\|3447089_3448988_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_010645.1\|WP_012418816.1\|3452092_3453625_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_010645.1\|WP_012418815.1\|3451780_3452089_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_010645.1\|WP_012418822.1\|3459621_3460476_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_010645.1\|WP_012418827.1\|3465692_3466211_+\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|381213
NC_010645.1\|WP_012418818.1\|3455431_3456094_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NC_010645.1\|WP_039051316.1\|3443366_3444857_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NC_010645.1\|WP_012418814.1\|3450509_3451553_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_010645.1\|WP_012418809.1\|3444867_3445920_+\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NC_010645.1\|WP_012418813.1\|3449540_3450425_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NC_010645.1\|WP_012418810.1\|3445956_3447093_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NC_010645.1\|WP_012418819.1\|3456192_3456975_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NC_010645.1\|WP_012418824.1\|3461805_3462417_-\|methionine-biosynthesis-protein-MetW	unknown	unknown	gnl\|CDD\|273958
NC_010645.1\|WP_086935808.1\|3460477_3461710_-\|muropeptide-transporter	unknown	unknown	gnl\|CDD\|183369

Protein	Function_ID	Function_description	E-value
NC_010645.1\|WP_039051319.1\|3464072_3465659_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NC_010645.1\|WP_049794180.1\|3448999_3449560_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.98743e-19
NC_010645.1\|WP_012418820.1\|3457466_3458804_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NC_010645.1\|WP_012418825.1\|3462413_3463661_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NC_010645.1\|WP_039051317.1\|3458855_3459494_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.85822e-75
NC_010645.1\|WP_012418817.1\|3453627_3455085_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NC_010645.1\|WP_012418811.1\|3447089_3448988_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_010645.1\|WP_012418816.1\|3452092_3453625_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_010645.1\|WP_012418815.1\|3451780_3452089_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.36957e-31
NC_010645.1\|WP_012418822.1\|3459621_3460476_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.47285e-26
NC_010645.1\|WP_012418827.1\|3465692_3466211_+\|lipocalin-family-protein	gnl\|CDD\|381213	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins. Escherichia coli bacterial lipocalin (Blc, also known as YjeL) is an outer membrane lipoprotein involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Blc has a binding preference for lysophospholipids. This group includes eukaryotic lipocalins such as Arabidopsis thaliana temperature-induced lipocalin-1 (TIL) which is involved in thermotolerance, oxidative, salt, drought and high light stress tolerance, and is needed for seed longevity by ensuring polyunsaturated lipids integrity. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	2.27722e-75
NC_010645.1\|WP_012418818.1\|3455431_3456094_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.96785e-83
NC_010645.1\|WP_039051316.1\|3443366_3444857_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.5303e-116
NC_010645.1\|WP_012418814.1\|3450509_3451553_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_010645.1\|WP_012418809.1\|3444867_3445920_+\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.36949e-114
NC_010645.1\|WP_012418813.1\|3449540_3450425_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	8.29804e-92
NC_010645.1\|WP_012418810.1\|3445956_3447093_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.39417e-155
NC_010645.1\|WP_012418819.1\|3456192_3456975_-\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.37289e-138
NC_010645.1\|WP_012418824.1\|3461805_3462417_-\|methionine-biosynthesis-protein-MetW	gnl\|CDD\|273958	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. [Amino acid biosynthesis, Aspartate family].	6.65817e-109
NC_010645.1\|WP_086935808.1\|3460477_3461710_-\|muropeptide-transporter	gnl\|CDD\|183369	PRK11902, ampG, muropeptide transporter; Reviewed.	0

>NC_010645.1|WP_012418817.1|3453627_3455085_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MEWEIVIGLETHVQLATESKIFSGSSTRFGAAPNTQANEVDLALPGSLPVMNRGAAERAILFGLAIGAKIAPRSVFARKNYFYPDLPKGYQISQYELPVVVGGTLSFFVGEEEKTINLTRAHLEEDAGKSLHDEFHLANGAPASGIDLNRAGTPLLEIVTEPEMRSAAEAVAYARALHGLVVWLGICDGNMQEGSFRCDANVSVRPRGQVEFGTRAEIKNVNSFRFLERAIQYEVRRQIELIEDGGKVVQETRLYDAERDETRSMRSKEDAHDYRYFPDPDLPTLVIGQDWVEAVRATMPELPSAMRARFEADFGLPAYDAAQLTISRKLAAYFEAVARALPAGQAKLAANWIMGEVTATLNREEKDIADTPVQAAQLAALINRIIDGTISNKIARDVFAAMWAGENGGEPDAIIEARGLKQISDTGTISAMIDEVLAANPAIVAEYRAGKEKAFNSLVGQIMKAARGKANPQQVNDLLKAKLSA
>NC_010645.1|WP_012418816.1|3452092_3453625_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSQSALHTEFGDIAGLRAALAERRVSAVELAESGLAAAQAAAGLNAFLHIDPELTLVQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRSTAGSKMLRDYLSPFDATVVERLQAAGAVSLGKLNCDEFAMGSGNENSAFGPARNPWDLAAVPGGSSGGSAAAVAARLVAGATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMSGFDPRDATSLERCDDAANAPGRIRAAFDAAQNGYQAAGSQPLKGLRIGVPAEFFGAGLTPDVAAAVEAALRQFEALGAERVAISLPRTELAIPAYYVIAPAEASSNLARFDGVRYGHRAAEYSDLNEMISRSRAEGFGDEVKRRILIGAYVLSHGYYDAYYLQAQRLRRLIAQDFQRAFAGQCDVIMGPVAPSVAKNIGENRDDPTADWLADVYTLGVSLAGLPAMSVPCGFGAAGRPVGLQIIGNYFDEGRLLAIADRYQQVTDWHQRTPATQDA
>NC_010645.1|WP_012418815.1|3451780_3452089_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MALNQQDVARIARLARIELTPEQQSRAQDELNGILHLIERLQAVDTQGVEPLAHPLSAHEDIPLRLRQDAVTETASAERRAELLANAPEQSAGLFLVPKVIE
>NC_010645.1|WP_012418814.1|3450509_3451553_-|rod-shape-determining-protein
MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEGGPNGKKVIQAVGQEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNMLAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSMVVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKQIGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPPELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKLGAIFIND
>NC_010645.1|WP_012418813.1|3449540_3450425_-|rod-shape-determining-protein-MreC
MQRQGTPPLFRRGPPAEVRLVILVALALALIVVDSQLRILEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAANLVRSENEALQRQRIELSQVATHAVQLAAENAQLRRLLGVTDTVGQPATVVEVLYEPPNAFHPRLVFNKGSKAGIAPGMPVIDEGGVVGQIVRVTPMTAEAAMVTDERVSIPVQVLRNGLRLIAFGGHTPGTIDVRYLAANADIKPGDTIVTSGVGGLFPAGLPVAKISSVERDTASGFARAIAEPLAHPERYRHFLVLQVDVAKAEANQEEADGGTTQ
>NC_010645.1|WP_049794180.1|3448999_3449560_-|rod-shape-determining-protein-MreD
MVAPRNNAAQRRLGTPSNVHPERLMRPARGFFVWGTLLLVWLLSLLPWRQWPASPDILLLVIAFWSAYEPRRVGMFTAFIFGLLLDVHDASLLGGHALTFTLVAYGALALHRRLQRFDLWSQAMHMLPVFFLSQLLTQIIMAWLAGRWAGWDWAYGVLLTTALWPVFGWVLQLPQRLHDDVESSAS
>NC_010645.1|WP_012418811.1|3447089_3448988_-|penicillin-binding-protein-2
MFEFKKTSQQQKQRFRLRAWVGGLFALACFGVLIGRFWYLQVDRYEGFSERADRNRIAVQPIPPRRGEVLDRNGVVLARNYRTYTLEVVPARAGPVDELFARLTPVVYISPADQRRFKRRVSESGRYANLVLRNNLNETEAAWFSAHAFEFPGVELRARWVREYPQGEAAAHVVGYIGRIAENDLEDLEKSGQLGNYRGTDVIGKKGIEKTWEQALHGRTGLEEVEVTAGGRPVRTLRRIDPVPGSDIMLSIDLGLQRVAEKAFEGHRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLSGTYPIGSTYKPFVGLAALELGKRRATDRLPDPGYYEFGGQKFRNAGGAVFGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGERAGVLPSTDWKRRAYKDRERQRWYAGETISVAVGQGYNAFTLLQLAQGTSTLANNGLYRRPHLVHAVRDSRTGELTATPSTPDYRIPLKQANIDVIKSAMADVVRSGTARRAFANTAYQAAGKTGTAQVFSLRGGQYRAAALDERLRDHALFMGFAPVEHPRIAVALIVENAGWGASVAAPIAREVFDYWLTPKREDKIVRPQQVAAGEKAQ
>NC_010645.1|WP_012418810.1|3445956_3447093_-|rod-shape-determining-protein-RodA
MKRIGLVLLRVFTAFDWPLLLVLVLFAALGLTVMHSAVGSTDWRFAEQARNFTIAFFAMWIVALVSPQTLMKLALPFYILGVVLLLGVEFVGETSKGATRWLNLGFTRIQPSEMMKIAVPMMLAWYFQRHEGQVRVRDFLVAVLMLGLPFGLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLIPAVLIGVIGIGTLVYYEDQLCEPDVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLLIARGLAIASRSVSQFGRLLAGSMTMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGVAFGIMMSISRAKPVKA
>NC_010645.1|WP_012418809.1|3444867_3445920_+|Ldh-family-oxidoreductase
MKIAIPDAIAYGEALLVAQGVPQDIAFDVAEHLVESDRVGYTSHGLSILPNYARVLKEGFLQADGRLQLLTDNGGFLAYDGNNGFGQHVGKMAVQAAIERTTQQGSCVLTLRRSHHLGRMGYYGEMAASAGFILLAFTNVINRAPTVAPFGGARACLTTNPLCFAGPLPGGRPPLIVDMATSSIAVNKARVLATNGEQAPPGSLIDAEGNPTTDPNALFTNPPGALLPFGGHKGYAMGVVAELLAGVLSGGGTIQPENPRQGVATNNMFAVLLDPQVDFNASWRSHEVAAFIDYLHDCPPQPGVDGVQYPGEYEAANRARNGDAISFAPAIWHKLAELGQKLGVSAPAAA
>NC_010645.1|WP_039051316.1|3443366_3444857_+|DASS-family-sodium-coupled-anion-symporter
MTAQAAVPAPQAPKKKIPIGLVAGFIALILVLLIPTPAELPVAGHRMLAILVFAVVVWITEAVSYEASAIMVTTLMAFLLGTAPSIKNPDVLIGTSAAITMALQGFANSALALVAGALFIAAAMTFTGLDRRIALVTLSLIGTTTRRILIGAIAVTIVLSLVVPSATARSAAVVPIMMGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVSWAEWLIAGAPWAIIMSVILILIVLKMLPPESNEIAGGKEAVERELREMGPMTPPQKRLLAVSIFLLMCWSTEKVLHNFDTTSTTYLGLVLLMLPRFGVMTWKDVQSRIPWGTVIVFGVGISLGSALLSTQAGQWLGNQVVTHTGLDNLGPLSIFAILGAFLILIHLGFASATALTSAMLPILISVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFTARQFAKVGILITIIGFALMIVMGMTYWRWLGLL
>NC_010645.1|WP_012418818.1|3455431_3456094_-|orotate-phosphoribosyltransferase
MSNTATDFVRFALDEGVLRFGSFKVKSGRMSPYFFNAGLFNSGRSVGKLAAFYAQALLDSGLNFDMLFGPAYKGIPLATATAVALAGHPQASGDIPFAYNRKEAKDHGEGGTLVGAPLAGRVVIIDDVITAGTSVRESVEIIRAAGAQPAAVLIAMDRMERAGPDEALSPHSAVQDVAKTYGIPVISIASLADILQLLQDDEQFAAHRDSVLAYREQYGV
>NC_010645.1|WP_012418819.1|3456192_3456975_-|exodeoxyribonuclease-III
MLRVISANLNGIRSANTKGFFDWLHQQNADFVCVQELKAQEADLSPAMKAPAPLQGYFHYAEKKGYSGVGIYTPHEPESVVIGLGVPDIDAEGRYIELVYPKLSVVSVYLPSGSSGDHRQTAKYRFMEHFYRHLADLIGRGREVVICGDWNIAHKEADLKNWKGNLKNSGFLPEERAWLTQVFDELKWVDVYRRLAPDATGEGYTWWSNRGQAWAKNVGWRIDYHIASGALAATAQQAAIYKDVRFSDHAPLTIDYDFSL
>NC_010645.1|WP_012418820.1|3457466_3458804_+|NADP-specific-glutamate-dehydrogenase
MQSLNDFLGRVASRDPHQPEFMQAVQEVMGSLWPFIEKNPSYGQQALLERLVEPERVIQFRVCWTDDQGRAQVNRAFRIQHNSAIGPFKGGMRFHPSVNLSVLKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDGEVMRFCQALMVELYRHLGPDTDVPAGDIGVGAREVGYMAGMMKKLSNSAASVFTGKGLSFGGSLIRPEATGFGTVYFAEQMLRRVSMSFEGLRVSVSGSGNVAQYAIEKAMALGARVLTASDSGGTVVDEAGFTPEKLQALMHIKNVQRGRVEDYAKQFGLRFLPGARPWQIPVDVALPCATQNELDEADARILIANGVKCVAEGANMPATLAAAQAFIDAHVLYAPGKASNAGGVAVSGLEMSQNAARLSWTREEVDQRLFAIMCDIHENCVRHGHAESGYVNYLDGANIAGFVKVADAMLQQGLY
>NC_010645.1|WP_039051317.1|3458855_3459494_-|trimeric-intracellular-cation-channel-family-protein
MPSETSTLLLHTLYLIAIVAEAMTAALAAGRREMDWVGVCVIACVTALGGGSLRDVLLGHYPLTWVSHPEYLAMTAGAALLTALCAPMLRHLRKVFLLLDALGLVAFSIIGCKVAQQMDLPLSIVIISGVITGCAGGVLRDVLCNDIPLLFRSELYASVSLVTGGLYLALDHYTGTVNVAVPIALAVGLAFRLLALRFNWQMPKFVYRGDWH
>NC_010645.1|WP_012418822.1|3459621_3460476_+|universal-stress-protein
MTETILLATDLSARSDRALDRALMLARQHHDRLLALHVMEPPSASTLATPAWRRLTPDHKALAEQRLAEDLAEAGVPTEAVVVSGHPLDVILDTVQHFNCSLIVTGVARETTVGRLLLGTTVERLARHASTPVLVVKARPRKPYQDVVIATDFSEGSRQALTAALKLAADARITLFHAYSTPAGQDDLPQDAEVRSLYNDALQKAQAFLAATPELAGRAMPEIVLEAGLPEHMLSEFVFKRRCDLVVTGTHGLTGILRTAIGSVAEKLLEALPCDVLIVRQAAA
>NC_010645.1|WP_086935808.1|3460477_3461710_-|muropeptide-transporter
MYFSRRVAPLLALGFASGLPLALTSGTLQAWATVEGASLQDIGFLTLVGSAYTLKFLWAPLIDRYAPPFLGRRRGWMLLTQLLLAVTIMLMGLLSPEQSLLPLAMLAVLVAFLSASQDIAFDAYSTDVLHKNERGAGAAVKVLGYRLAMLVSGGLALVLADHWLGWGTTYVLMGFLMLAGVAGTFWAPEPEQPSAAPRSLGRAVVEPFREFFSRRGAIIFLALIVLYKLGDAFAGALSTTFLIRGAGFTPTEVGTVNKILGLAATIVGALAGGAIMSRWGLYRSLMAFGALQAVSNLGYWLISVAPKSIGLMALAVGIENLCGGLGTAAFVALLMSMCNRAFSATQFALLSALSAVGRTYLAGPLTPVLVGYMGWPGFFMATVFIALPGLVLLWLRKSDIESLEREGLRL
>NC_010645.1|WP_012418824.1|3461805_3462417_-|methionine-biosynthesis-protein-MetW
MSPAINALAPVVLRPDLERIANWIAPASRVLDLGCADGALLAYLRDYRQVRGAGVEIDDASVIACVGRGVEVIQQNLEDGLALFDDKQFDTVVLSQTLQSMHRTEHILREMARVSRFGIVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDFEDLARDVGVRILERATFNDRREVKVLPGWRSTLAVYRFEA
>NC_010645.1|WP_012418825.1|3462413_3463661_-|homoserine-O-acetyltransferase
MTSPALTAASVTPSRNTTSPDTTSHRPASVGVVSPVFLRFDEPLPLASGQSLNAYELAVETYGTLNAERSNAVLICHALNASHHVAGVAAGNPKDVGWWDNMVGPGKPVDTDVFFVIGINNLGSCFGSTGPASTNPETGLPWGAAFPVLTVEDWVRAQARVADHFGIQRFAAVMGGSLGGMQALSWAITLPERVAHCVVIASTPRLSAQNIGFNEVARRAIITDPGFHGGNYYAHDTVPHRGLAVARMIGHITYLSDDDMAEKFGRTQREPAENGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALSSAQADFLLVSFTTDWRFPPERSRDIVRALLKNGSPVTYAEIDAPHGHDAFLLEDARYHAVVSAYYERIARNLGLTRQAEESAA
>NC_010645.1|WP_039051319.1|3464072_3465659_+|glutamate--cysteine-ligase
MTAHSNSRLALVQAHPDLLAQTLRGVEKEGLRVDAQGVLARTPHPAGLGSALTNEQVTTDYSEALLELITGTHSRVESLLQELRDTHRFVYGVLDGELIWNQSMPAYLPAEADIPIAWYGHSNTGMLKHVYRRGLAERYGKTMQCIAGVHYNFSLPDALWPLLEPDAASLQESRSRGYIALIRNFTRYSWLLMYLFGAAPALSREFMRGREHPLQSLGADTLYLPYATSLRMSDLGYQNKAQSQLKLCYNDLSTFLGRLYEAVTQPWPAYQAIGTQRDGAWIQLNTNVLQIENEYYSSIRPKRTTGRCERPITALAERGVQYVEVRCLDIDPQEPTGLAPDTARFVDAFLLFCAVSESRFFDQNGYCQRSADNFSTVVKEGRKPGLMLDHDGQPVSLAQWGEALLDQVTQYAALYDAALGGTAYVAAVEQQRAKLLDPDLTPSARLLADLRASGQSFHDYTLAQSQRHADTLRAEALPAATAQAYADAVQDSLAQQQQIEQSDTVDFDTYVARYHAALKNPLPARDAS
>NC_010645.1|WP_012418827.1|3465692_3466211_+|lipocalin-family-protein
MRRLILSLVLLASGLGLAQAQPAAVRTVDHVDLDRYMGRWYEIAHLPMFFQRNCVGDTTAEYSQNTDGTVSVTNRCRTKNGSIDAATGTATVVADSGNAKLEVSFFRPFKGDYWIIGLDPEYRWAVVGSPNRKTLWVLARTPELAPADLQQALNIAKSQGYDLSELKYTEQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

417176 : 435751

Bordetella_phage(76.47%)

terminase,tail,head,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012416107.1\|417176_418001_+	YdaU family protein	A0A2I7RHJ6	Vibrio_phage	3.7e-19	47.7
WP_012416108.1\|417987_418686_+	hypothetical protein	NA	NA	NA	NA
WP_012416109.1\|418682_419054_+	endonuclease	NA	NA	NA	NA
WP_012416110.1\|419214_419481_+	hypothetical protein	Q775B7	Bordetella_phage	1.2e-27	84.2
WP_041937482.1\|419499_420075_+	hypothetical protein	Q775B8	Bordetella_phage	9.4e-78	85.0
WP_041937541.1\|420080_421613_+\|terminase	terminase	Q775B9	Bordetella_phage	6.3e-238	75.8
WP_041937483.1\|421656_422121_+	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	8.7e-74	93.5
WP_012416114.1\|422117_422576_+	hypothetical protein	Q775C1	Bordetella_phage	4.9e-69	90.8
WP_041937484.1\|422958_424626_+\|head,tail	phage head-tail connector protein	T1S9Z7	Salmonella_phage	1.1e-134	46.0
WP_012416117.1\|424712_425060_+	hypothetical protein	Q775C5	Bordetella_phage	3.1e-52	89.6
WP_012416118.1\|425034_425709_+\|protease	protease	Q775C6	Bordetella_phage	2.2e-89	85.3
WP_012416119.1\|425722_426718_+	hypothetical protein	Q775C7	Bordetella_phage	5.8e-184	97.3
WP_012416120.1\|426736_427159_+	hypothetical protein	Q775C8	Bordetella_phage	3.3e-56	82.1
WP_012416121.1\|427171_427372_+	hypothetical protein	Q775C9	Bordetella_phage	7.9e-24	79.4
WP_012416122.1\|427446_428118_+	hypothetical protein	Q775D0	Bordetella_phage	2.1e-116	93.2
WP_012416123.1\|428117_430163_+	hypothetical protein	Q775D1	Bordetella_phage	0.0e+00	93.7
WP_012416124.1\|430174_430768_+	phage protein	Q775D2	Bordetella_phage	3.5e-19	45.8
WP_127815127.1\|430779_432375_+	hypothetical protein	W6MYA2	Pseudomonas_phage	3.3e-19	28.6
WP_086935762.1\|432334_435751_+	hypothetical protein	M1IDU6	Pelagibacter_phage	3.7e-52	24.1

DBSCAN-SWA_2

1371641 : 1379281

Cronobacter_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012416960.1\|1371641_1372889_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	2.1e-69	39.8
WP_012416961.1\|1372840_1373044_-	excisionase family protein	NA	NA	NA	NA
WP_012416962.1\|1373075_1373405_-	hypothetical protein	NA	NA	NA	NA
WP_012416963.1\|1373401_1374436_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	3.2e-100	57.9
WP_041937556.1\|1374439_1374937_-	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	4.7e-57	63.0
WP_012416965.1\|1374940_1375315_-	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	3.2e-26	49.6
WP_012416966.1\|1375311_1376244_-	hypothetical protein	NA	NA	NA	NA
WP_012416967.1\|1376240_1377143_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	3.3e-45	35.3
WP_041937501.1\|1377209_1377485_+	hypothetical protein	NA	NA	NA	NA
WP_012416968.1\|1377521_1378016_-	siphovirus Gp157 family protein	Q9T0Y7	Lactobacillus_phage	1.7e-11	32.5
WP_041937502.1\|1378018_1378618_-	hypothetical protein	NA	NA	NA	NA
WP_012416970.1\|1378630_1379281_-	ATP-binding protein	A0A2D1GLT5	Escherichia_phage	7.4e-55	50.2

DBSCAN-SWA_3

1386891 : 1411529

Burkholderia_phage(36.36%)

terminase,tail,capsid,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041937507.1\|1386891_1387683_+	DUF1376 domain-containing protein	A0A2I7RGZ2	Vibrio_phage	1.9e-44	61.1
WP_012416985.1\|1387669_1388368_+	hypothetical protein	NA	NA	NA	NA
WP_012416986.1\|1388364_1388736_+	endonuclease	NA	NA	NA	NA
WP_041937508.1\|1388890_1389223_+	hypothetical protein	NA	NA	NA	NA
WP_012416988.1\|1389232_1389589_+	hypothetical protein	NA	NA	NA	NA
WP_148265621.1\|1389944_1390454_+	hypothetical protein	H6WRU8	Salmonella_phage	2.6e-15	40.8
WP_012416991.1\|1390468_1390795_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-40	77.6
WP_012416992.1\|1390778_1391033_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	4.5e-32	77.4
WP_012416993.1\|1391094_1391529_+\|terminase	terminase small subunit	E5AGA2	Erwinia_phage	2.1e-37	63.4
WP_086935776.1\|1391593_1392931_+\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	7.9e-144	61.7
WP_012416995.1\|1392927_1394403_+	DUF1073 domain-containing protein	B5M9R6	Pseudomonas_phage	1.3e-102	44.9
WP_012416996.1\|1394347_1395196_+\|capsid	minor capsid protein	Q6IWU3	Burkholderia_phage	3.5e-44	38.5
WP_012416997.1\|1395188_1396439_+	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	6.2e-42	43.9
WP_012416998.1\|1396441_1396909_+	hypothetical protein	NA	NA	NA	NA
WP_012416999.1\|1396924_1398004_+	DUF2184 domain-containing protein	A0A2H4P6S2	Pseudomonas_phage	1.4e-53	39.5
WP_158308694.1\|1398038_1398458_-	hypothetical protein	NA	NA	NA	NA
WP_012417001.1\|1398456_1398882_+	DUF4054 domain-containing protein	A0A088C3T8	Shewanella_sp._phage	4.4e-16	36.8
WP_012417002.1\|1398878_1399355_+	hypothetical protein	A0A077KC03	Edwardsiella_phage	2.1e-22	40.8
WP_012417003.1\|1399351_1399735_+	hypothetical protein	NA	NA	NA	NA
WP_012417004.1\|1399715_1400243_+	hypothetical protein	NA	NA	NA	NA
WP_012417005.1\|1400251_1401760_+	DUF3383 domain-containing protein	I7B2P4	Escherichia_phage	6.1e-76	38.0
WP_012417006.1\|1401819_1402281_+	hypothetical protein	A1Z014	Burkholderia_virus	5.9e-30	45.1
WP_012417007.1\|1402292_1402718_+	hypothetical protein	Q6IWV4	Burkholderia_phage	8.4e-23	46.4
WP_012417009.1\|1402838_1404452_+\|tail	tail protein	NA	NA	NA	NA
WP_041937568.1\|1404499_1405000_+	hypothetical protein	NA	NA	NA	NA
WP_012417011.1\|1404987_1405299_+	hypothetical protein	I7A8L4	Escherichia_phage	4.5e-10	36.0
WP_193345659.1\|1405339_1406116_+	hypothetical protein	Q6IWQ0	Burkholderia_phage	4.3e-41	38.1
WP_012417013.1\|1406100_1406808_+	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	1.9e-32	35.7
WP_041937510.1\|1406804_1407149_+	hypothetical protein	NA	NA	NA	NA
WP_012417015.1\|1407141_1408332_+\|plate	baseplate J/gp47 family protein	A0A2H5BG53	Pseudoalteromonas_phage	1.2e-66	35.6
WP_012417016.1\|1408328_1408979_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	4.0e-40	41.3
WP_012417020.1\|1410594_1411050_+	lysozyme	A0A0U4JP67	Pseudomonas_phage	7.8e-43	64.6
WP_086935777.1\|1411028_1411529_+	DUF2514 family protein	Q3HQV1	Burkholderia_phage	3.4e-07	58.5

DBSCAN-SWA_4

1480039 : 1570387

Burkholderia_phage(13.16%)

tail,integrase,portal,terminase,head,capsid,tRNA,protease

attL 1491934:1491951|attR 1576906:1576923

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012417092.1\|1480039_1482901_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	2.8e-69	25.4
WP_039052066.1\|1482890_1483856_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_169507411.1\|1483754_1484573_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.8e-27	37.8
WP_039052075.1\|1484753_1486064_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_039052076.1\|1486070_1486346_-	hypothetical protein	NA	NA	NA	NA
WP_012417097.1\|1486686_1487895_+	fatty acid desaturase	NA	NA	NA	NA
WP_012417098.1\|1487891_1490144_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	4.5e-107	37.3
WP_086935778.1\|1490499_1492422_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.2e-65	31.7
1491934:1491951	attL	NA	NA	NA	NA
WP_012417100.1\|1492418_1493309_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_012417101.1\|1493315_1494449_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_012417102.1\|1494448_1495270_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_012417103.1\|1495293_1496484_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_039052068.1\|1496815_1498024_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	6.3e-132	61.6
WP_041937512.1\|1498809_1499826_-	recombination protein RecT	Q858E1	Salmonella_phage	2.2e-61	47.8
WP_012416092.1\|1499837_1500692_-	PD-(D/E)XK nuclease-like domain-containing protein	V5YTC9	Pseudomonas_phage	2.2e-38	32.2
WP_012416093.1\|1500695_1500881_-	hypothetical protein	NA	NA	NA	NA
WP_012417109.1\|1500877_1501165_-	hypothetical protein	NA	NA	NA	NA
WP_012416095.1\|1501234_1501984_-	Bro-N domain-containing protein	Q7Y5V4	Haemophilus_phage	2.9e-34	43.5
WP_012416096.1\|1502336_1502600_+	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_039052135.1\|1502777_1503002_-	hypothetical protein	NA	NA	NA	NA
WP_012417110.1\|1503553_1504108_-	ead/Ea22-like family protein	NA	NA	NA	NA
WP_012417112.1\|1504790_1505153_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012417115.1\|1505783_1506224_-	hypothetical protein	C7BGF7	Burkholderia_phage	8.1e-13	37.7
WP_012417116.1\|1506267_1506531_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_127812204.1\|1506862_1507228_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041937479.1\|1507576_1507825_-	hypothetical protein	NA	NA	NA	NA
WP_012416105.1\|1508054_1508519_+	hypothetical protein	NA	NA	NA	NA
WP_012417121.1\|1508763_1509708_+	YdaU family protein	A0A2H4FS76	Methylophilaceae_phage	6.4e-15	41.8
WP_012417122.1\|1509704_1510187_+	hypothetical protein	NA	NA	NA	NA
WP_012417123.1\|1510183_1510837_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	9.2e-29	48.7
WP_012417125.1\|1511063_1511435_-	DUF2513 domain-containing protein	Q3HQY9	Burkholderia_phage	1.2e-33	58.2
WP_082011720.1\|1511604_1512012_+	hypothetical protein	NA	NA	NA	NA
WP_012417127.1\|1512011_1512413_+	hypothetical protein	NA	NA	NA	NA
WP_012417129.1\|1512700_1513204_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_158308695.1\|1513313_1513496_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_082011721.1\|1513676_1514648_+	Bro-N domain-containing protein	A0A2H4JG39	uncultured_Caudovirales_phage	1.1e-25	39.3
WP_012417132.1\|1515063_1515342_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	2.9e-08	57.1
WP_012417133.1\|1515328_1515595_-	BrnT family toxin	NA	NA	NA	NA
WP_012417134.1\|1515775_1516159_+	HNH endonuclease	Q8W6N0	Burkholderia_virus	7.0e-29	55.6
WP_012417135.1\|1516355_1516838_+\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	2.7e-54	64.6
WP_039052220.1\|1516841_1518566_+\|terminase	terminase large subunit	A4JWZ7	Burkholderia_virus	7.0e-278	80.5
WP_012417137.1\|1518567_1518723_+	hypothetical protein	NA	NA	NA	NA
WP_012417138.1\|1518719_1519952_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.2e-154	66.8
WP_012417139.1\|1519960_1520578_+\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	5.1e-61	61.8
WP_012417140.1\|1520590_1521814_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.6e-135	59.3
WP_039052222.1\|1521851_1522172_+\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	3.8e-12	36.5
WP_012417142.1\|1522182_1522521_+\|head	phage head closure protein	Q3HQT3	Burkholderia_phage	9.3e-09	39.3
WP_012417143.1\|1522517_1523012_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012417144.1\|1523004_1523355_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_039052219.1\|1523354_1523795_+	hypothetical protein	NA	NA	NA	NA
WP_012417146.1\|1523866_1524514_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	3.9e-56	52.1
WP_012417147.1\|1524547_1524865_+\|tail	phage tail assembly chaperone	A0A0S2SYT8	Pseudomonas_phage	5.6e-24	48.6
WP_119649675.1\|1524927_1525173_+	DUF1799 domain-containing protein	NA	NA	NA	NA
WP_041937514.1\|1525207_1530745_+\|tail	phage tail length tape measure family protein	A0A2H4J107	uncultured_Caudovirales_phage	8.8e-72	34.0
WP_012417150.1\|1530741_1531632_+	hypothetical protein	NA	NA	NA	NA
WP_012417151.1\|1531633_1532563_+	phage protein	NA	NA	NA	NA
WP_012417152.1\|1532569_1532962_+	hypothetical protein	NA	NA	NA	NA
WP_049794141.1\|1533048_1533327_+	hypothetical protein	NA	NA	NA	NA
WP_119649676.1\|1533342_1534149_+	hypothetical protein	NA	NA	NA	NA
WP_012417155.1\|1534153_1534369_+	hypothetical protein	NA	NA	NA	NA
WP_012417156.1\|1534368_1534920_+	lysozyme	NA	NA	NA	NA
WP_012417157.1\|1534963_1535488_-	hypothetical protein	NA	NA	NA	NA
WP_049794204.1\|1535772_1536228_+	DUF2514 family protein	Q3HQV1	Burkholderia_phage	1.2e-06	56.6
WP_012417159.1\|1536356_1536641_-	transcriptional regulator	NA	NA	NA	NA
WP_039051389.1\|1537632_1537971_+	hypothetical protein	NA	NA	NA	NA
WP_012417162.1\|1538351_1538540_-	hypothetical protein	NA	NA	NA	NA
WP_012417163.1\|1538730_1539051_-	hypothetical protein	NA	NA	NA	NA
WP_012417164.1\|1539047_1539347_-	hypothetical protein	NA	NA	NA	NA
WP_012417165.1\|1539926_1540160_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_012417166.1\|1540347_1542105_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA
WP_049794142.1\|1542571_1542760_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_012417168.1\|1543051_1543372_+	hypothetical protein	NA	NA	NA	NA
WP_012417169.1\|1543679_1543883_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.6e-18	66.7
WP_012417170.1\|1544160_1544706_+	DUF924 family protein	NA	NA	NA	NA
WP_012417171.1\|1544961_1545168_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	59.1
WP_012417172.1\|1545237_1545816_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.8e-23	34.3
WP_012417173.1\|1545995_1547306_+	trigger factor	NA	NA	NA	NA
WP_012417174.1\|1547308_1547962_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.5e-55	55.9
WP_012417175.1\|1548065_1549364_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-129	56.2
WP_012417176.1\|1549538_1551971_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-220	52.0
WP_012417177.1\|1552206_1553703_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	4.1e-16	28.5
WP_012417178.1\|1553810_1555055_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_119649677.1\|1555214_1556336_-	MFS transporter	NA	NA	NA	NA
WP_012417180.1\|1556853_1557495_-	transcriptional repressor LexA	A0A2H4JG58	uncultured_Caudovirales_phage	3.2e-10	50.7
WP_012417181.1\|1557795_1558998_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_012417182.1\|1559073_1561104_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_012417183.1\|1561353_1561845_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_012417184.1\|1562034_1562568_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_012417185.1\|1562589_1563801_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_012417186.1\|1563837_1564242_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.1e-52	79.0
WP_012417187.1\|1564243_1564567_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.2e-24	52.3
WP_012417188.1\|1564570_1565077_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_039051392.1\|1565109_1566972_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.3e-99	40.8
WP_012417190.1\|1566980_1567322_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_012417191.1\|1567321_1567516_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_012417192.1\|1567630_1568527_+	methylglyoxal synthase	NA	NA	NA	NA
WP_012417193.1\|1568571_1568859_-	hypothetical protein	NA	NA	NA	NA
WP_012417194.1\|1568872_1570387_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.3e-81	36.8
1576906:1576923	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2119236 : 2130270

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012417642.1\|2119236_2120667_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.4e-29	26.4
WP_012417643.1\|2120779_2121328_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_012417644.1\|2121431_2122211_-	3'-5' exonuclease	NA	NA	NA	NA
WP_012417645.1\|2122207_2123059_-	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	9.2e-13	40.3
WP_012417646.1\|2123076_2123871_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-32	45.7
WP_012417647.1\|2123855_2124614_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	52.0
WP_012417648.1\|2124783_2125422_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012417649.1\|2125574_2126612_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.5e-94	52.9
WP_012417650.1\|2126710_2128003_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	7.6e-67	36.3
WP_012417651.1\|2128156_2129170_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_012417652.1\|2129281_2129665_+	thioredoxin	V9SJ74	Achromobacter_phage	1.0e-11	28.6
WP_012417653.1\|2129667_2130270_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.4e-17	48.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010645

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection