CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010688	Xanthomonas campestris pv. campestris, complete genome	2 crisprs	RT,WYL,PD-DExK,cas3,DinG,csa3,DEDDh	4	15	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010688_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010688_1

591225-592255

Orphan

Consensus_repeat	Method
CTCACTGCCGGCTATGGCAGCAC	CRISPRCasFinder

21 spacers

The CRISPR arrays of NC_010688_1

>merge|NC_010688|1|591225-592255|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCACGCTCACTGGCGCCGATCAGAGTCAGCTGATCGCAGGCTATGGAAGTACCGAGACCGCGGGGAACGGCAGCGAGTTGATCGCCGGCTACGGCAGCACCGGCGTGGCCGGATCCGACAGCACCATCGTTGCCGGCTATGGCAGCTCTCAAACGGCCGGAGGCGGAAGCACGCTGACTGCCGGGTATGGCAGCACACAGACCGCCCGCAATGGCAGCGAGCTGACGGCCGGTTACGGCAGTACGGAAACCGCCGGTGCAGACAGCTCGCTGATCGCAGGCTACGGCAGCACGCAAACCTCCGGCGGCGACAGCTCGTTGACTGCCGGCTATGGCAGTACCCAAACCGCGCAGAACGGCAGCGACCTCACCGCCGGCTACGGCAGCACCAGCACGGCGGGCACCGATAGCTCGCTGATCGCCGGCTACGGCAGCACCCAGACCTCGGGCGGAGAGAGCTCGCTCACTGCCGGCTATGGCAGCACGCAGACGGCGCAGGACGGCAGCGACCTCACCGCCGGCTATGGCAGCACAGGCACCGCAGGTGCAGATAGCTCCCTGATTGCTGGTTATGGCAGTACGCAGACATCCGGCAACGACAGCTCGCTGACGGCGGGCTACGGCAGCACCCAAACCGCCCGTACCGGCAGCGACCTCACTGCGGGTTACGGCAGCACCTCCACCGCTGGTGCGGACAGCACGCTGATCGCCGGTTATGGCAGCACCCAGACTTCCGGCGGGGACAGTTCGCTCACCGCCGGCTACGGCAGCACCCAAACCGCGCGCAAGGGTAGCGACCTCACGACGGGGTACGGCAGCACCTCGACCGCCGGCGCGGACAGCACCTTGATCGCCGGCTACGGCAGCACGCAGACCTCGGGTAGCGAGAGTTCGCTCACGGCTGGCTATGGCAGTACGCAGACCGCACGCAAGGGCAGTGACCTCACCGCCGGCTACGGCAGCACCTCGACCGCCGGTGCGGACAGCACCTTGATCGCCGGCTACGGCAGCAC

>NC_010688|1|1|591225-592255|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCAC	GCTCACTGGCGCCGATCAGAGTCAG
CTGATCGCAGGCTATGGAAGTAC	CGAGACCGCGGGGAACGGCAGCGAG
TTGATCGCCGGCTACGGCAGCAC	CGGCGTGGCCGGATCCGACAGCACC
ATCGTTGCCGGCTATGGCAGCTC	TCAAACGGCCGGAGGCGGAAGCACG
CTGACTGCCGGGTATGGCAGCAC	ACAGACCGCCCGCAATGGCAGCGAG
CTGACGGCCGGTTACGGCAGTAC	GGAAACCGCCGGTGCAGACAGCTCG
CTGATCGCAGGCTACGGCAGCAC	GCAAACCTCCGGCGGCGACAGCTCG
TTGACTGCCGGCTATGGCAGTAC	CCAAACCGCGCAGAACGGCAGCGAC
CTCACCGCCGGCTACGGCAGCAC	CAGCACGGCGGGCACCGATAGCTCG
CTGATCGCCGGCTACGGCAGCAC	CCAGACCTCGGGCGGAGAGAGCTCG
CTCACTGCCGGCTATGGCAGCAC	GCAGACGGCGCAGGACGGCAGCGAC
CTCACCGCCGGCTATGGCAGCAC	AGGCACCGCAGGTGCAGATAGCTCC
CTGATTGCTGGTTATGGCAGTAC	GCAGACATCCGGCAACGACAGCTCG
CTGACGGCGGGCTACGGCAGCAC	CCAAACCGCCCGTACCGGCAGCGAC
CTCACTGCGGGTTACGGCAGCAC	CTCCACCGCTGGTGCGGACAGCACG
CTGATCGCCGGTTATGGCAGCAC	CCAGACTTCCGGCGGGGACAGTTCG
CTCACCGCCGGCTACGGCAGCAC	CCAAACCGCGCGCAAGGGTAGCGAC
CTCACGACGGGGTACGGCAGCAC	CTCGACCGCCGGCGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC	GCAGACCTCGGGTAGCGAGAGTTCG
CTCACGGCTGGCTATGGCAGTAC	GCAGACCGCACGCAAGGGCAGTGAC
CTCACCGCCGGCTACGGCAGCAC	CTCGACCGCCGGTGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010688.1\|WP_012437218.1\|595503_596805_-\|DUF3426-domain-containing-protein	unknown	unknown	gnl\|CDD\|378759
NC_010688.1\|WP_011035761.1\|598112_599033_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NC_010688.1\|WP_016945180.1\|587430_588078_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_010688.1\|WP_011035749.1\|582400_584164_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NC_010688.1\|WP_011035757.1\|595115_595388_-\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NC_010688.1\|WP_011035766.1\|603179_603662_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NC_010688.1\|WP_011035759.1\|597090_597468_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_010688.1\|WP_011035754.1\|588074_588707_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_010688.1\|WP_011035747.1\|580072_581656_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_010688.1\|WP_012437222.1\|601365_602733_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NC_010688.1\|WP_011269479.1\|581731_582346_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_010688.1\|WP_012437213.1\|585494_585938_+\|hypothetical-protein	unknown	unknown	unknown
NC_010688.1\|WP_011035763.1\|600366_600732_+\|hypothetical-protein	unknown	unknown	unknown
NC_010688.1\|WP_011035762.1\|599449_600370_+\|hypothetical-protein	unknown	unknown	unknown
NC_010688.1\|WP_011035765.1\|602775_603162_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_010688.1\|WP_012437214.1\|585934_587431_+\|TIGR04222-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|275063
NC_010688.1\|WP_012437216.1\|588703_589678_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NC_010688.1\|WP_012437210.1\|579203_580049_-\|hypothetical-protein	unknown	unknown	unknown
NC_010688.1\|WP_012437212.1\|584160_585498_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NC_010688.1\|WP_012437220.1\|597616_598111_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010688.1\|WP_012437218.1\|595503_596805_-\|DUF3426-domain-containing-protein	gnl\|CDD\|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	2.4713e-35
NC_010688.1\|WP_011035761.1\|598112_599033_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.9931e-137
NC_010688.1\|WP_012437216.1\|588703_589678_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	3.29452e-127
NC_010688.1\|WP_011035749.1\|582400_584164_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NC_010688.1\|WP_011035757.1\|595115_595388_-\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	3.72538e-51
NC_010688.1\|WP_011035766.1\|603179_603662_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	7.59427e-76
NC_010688.1\|WP_011035759.1\|597090_597468_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.88605e-09
NC_010688.1\|WP_011035754.1\|588074_588707_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.79069e-34
NC_010688.1\|WP_012437212.1\|584160_585498_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	2.8015e-43
NC_010688.1\|WP_012437222.1\|601365_602733_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NC_010688.1\|WP_011269479.1\|581731_582346_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	3.78122e-19
NC_010688.1\|WP_011035765.1\|602775_603162_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	4.16224e-50
NC_010688.1\|WP_012437214.1\|585934_587431_+\|TIGR04222-domain-containing-membrane-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	5.67248e-41
NC_010688.1\|WP_016945180.1\|587430_588078_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	3.82957e-10
NC_010688.1\|WP_011035747.1\|580072_581656_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0

>NC_010688.1|WP_012437216.1|588703_589678_+|phosphatidate-cytidylyltransferase
MNPYAFSGQLQQSSMHQQTLWLFSGIALVLVVATLISETLRWRARAQPSAVLDNLVARIRAWWVMAGVVGIAFVFGRAGVIGLFALVSLFALREFITLTPTRRGDYYALLAAFYIVLPWQYGLVWTGWYGMYTLLIPVYAFLVLPILATIGGDTTRYLERTAKVQWGLMICVFCISHVPALLNLEIPGYAGRNLLLIAFLVIVVQSSDVLQYVWGKLAGRHLIAPKLSPSKTVEGFIGGVLSASLLGMALWWITPFAPWHAFGLALVANLMGFFGGLVMSAIKRDRGIKDWGHMIEGHGGVLDRLDSVCFAAPVFFHLIRYGWA
>NC_010688.1|WP_011035754.1|588074_588707_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MIARLIARACSGAIRTLTGARALWRGCAPSNERRVYYGNHASHGDFVLIWSSLPASLRHEVRPVAAADYWQRTALRRYLIHAVFNGVLIERDAARRTRDPVECLCDAVDAGDSLILFPEGTRNPDEGVLPFKSGLYHLARQRPELEFVPVWIDNLKRVMPKGKWLPLPLLCTTTFGAPLRLEADEDKQAFLARAREALLALSPDQLEARA
>NC_010688.1|WP_016945180.1|587430_588078_+|CDP-alcohol-phosphatidyltransferase-family-protein
MAHETTGLRARQRQLARALRGRGATPNGVSWVGIAFAALAGLMFYIALSAPAREGAAPLLLALLRLQGRLWCNRLDGVLARQARLVSRAGEVYNDAPDRLSDVLVCIGLGYGLQASVPWAAQLGWAAALCCVATAYVRMLGLACGTAEPRQGPMSRVQRMHWLSLMTVLALPLQWMGQPRAAAWVLIGALAVLIAGAVLTVVLRLRMIVRALEWT
>NC_010688.1|WP_012437214.1|585934_587431_+|TIGR04222-domain-containing-membrane-protein
MTAAPTVPLQATPEQHALWLRLQAYAFGPDADALPAFERRVAQQAHCSVAVAQQLVEEYRRFCFLACTSTAQATPSPLVDQVWHTHLTDTREYWDSFCPQVLQTTLHHQPGRGSAAEDARFQQQYRATLERYELQFGAPPALLWPAPRPAPTAVPAAHDDASAAALRALRGEPAPPSVRRLPRAVIGWAFAAAVAAWLAYSANGGVPQPLQWRGVHFLPFFITLIGLGWSTSAWLRRALRGGRARVVDAVDASEFAYLSGGADRVADLLFTELLVRNAVYLDRDEDAQARRWVRWQPRIAVPPALEPALQALRSAEDPTVAWQALRGLAGPVRQQLIDKGLWLAPGAARWVRAVSTVPVAVVWVLGACKLVIGVQGGSPVGYLLGCMVLTSVLVLGFLLVPVRRTLSGDARLQARRQAVRRDAARTGADPGEAVALYGTVALVGTPWASYHEIRAPNTHHHDSTGSSCGGGGDGGDGGGGDSGGDGGGGCGGCGGGGD
>NC_010688.1|WP_012437213.1|585494_585938_+|hypothetical-protein
MTAVVTLASMRALLRQGAAVDRCAVLLLAAAVLLLGITDAPTVVQVAYALSALAGLAQRYWAFRVGLDADLLDAVLGQLERGHTDDAQAAQQLDQALQDIGLLRHAPPVRDWAARWRGMRGLLRTQLLCAALQVLALAIGLLAKGML
>NC_010688.1|WP_012437212.1|584160_585498_+|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MSAGARPFARAALWLAVLGLFFFLSYGLANTLAGRAASVPSVVFGWEHGMPFWPWTIVPYWSIDVFYAVSFFTCRTRRQLDTHALRLFTAQLLCVSCFLLWPLRYSFVRPDTEGVFGWLFAVLLGFDKPYNQAPSLHIVLLVVLWVRYGAQLQGVWRWLLHGWFALIGISVLTTYQHHFIDVPTGLAAGWLCVWLWPERIAAPWTDARLARDPRRWRLAALYLAGAGVTAGMALWLGGAALWLLWMSGALLLVALNYALLGPGGFQKRSDGQLSLAARWLYAPYLLAAWCNSRLWTRRAPLPRAVCDDVWLGRIPLPAQRAAFAVVVDVSAELSLRHAHANDRIIPMLDLVAPAPASLRAAAQAIEAARAHGSVLVCCALGYSRSAASVVTWLVLSQRAASVSEAMAWVRAARPSIVLGPHHQAAIAAACAGDAAADAPIAQVPA
>NC_010688.1|WP_011035749.1|582400_584164_+|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MRTVVEREFASFDGAPLFYRHWPVQAAADAATPPKAVVLLHRGHEHSGRVMHLAEELQLPDAQFFAWDARGNGRSPGARGDAPGFDALVRDLDSFIAHIGATHGIAVQDIVVIAQSVGAVVASTWVHDYAPPLRALVLASPAFKVKLYVPFARAGLALMQALRGNFFVNSYVKPQWLTHDPARVDSYRTDPLITRPISVRVLLGLYAAGDRVVADAQAITVPTQLLVSGADFVVHRGPQDRFYENLRSPIKQRHFLPGFFHDTLGERDRAIAIAQIRQFVSERFAQPPVRADLRDAHRAGPSFEEAERLAWPSQRNSLQDLRWRGVRAGLRLGGTLSEGIALGLQTGFDSGSTLDYIYRNQARGRGPLGRMIDRNYLNAIGWRGIRIRGAHLGELLRATATRLRQAGQPVRVLDIAAGHGRYVLEALGSGAQRADAIVLRDFSPLNVTQGAALIQALGAGDIARFEQGDAFDPVSVGAVDPAPTLAVVSGLYELFADNDQVARSLAGVAAAVPPGGYLLYTGQPWHPQLEFIARALTSHRDGVAWVMRRRSQQEMDGLVEAAGFRKVDQRIDAFGIFTVSLAQRINA
>NC_010688.1|WP_011269479.1|581731_582346_+|CDP-alcohol-phosphatidyltransferase-family-protein
MASIYALKGRFQDLLRPMVGALYRGGITANQVTLIAAAISVLVAAVVYRAGTSWPLLYLLLPVWMLLRMALNAIDGMLAREFGQQSRLGAYLNELCDVVADATLYLSLLGVPGVNASALWSFALLAALTEYAGVLGLMVGAGRRYDGPMGKSDRAFVIGALGLALAFGLLGGHGVTGVALLLCLACAATVWRRVRAGLADAAAR
>NC_010688.1|WP_011035747.1|580072_581656_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MASDFLPVRRALLSVSDKTGLIDLARALVARNVELLSTGGTAKAIRDAGLPVKDVAELTGFPEMMDGRVKTLHPLVHGGLLGRAGVDEAVMAEHGIAPIDLLVLNLYPFESVTAKADCTLADAVENIDIGGPAMLRSAAKNFARVAVATDPAQYADLLAELEANNGQLSAAQRFALSVAAFNRVAQYDAAISNYLSAVADSAESVPTRSPFPAQINSNFIKVMDLRYGENPHQSGAFYRDLYPVPGTLATFQQLQGKELSYNNLADADAAWECVRQFDAPACVIVKHANPCGVAVGVACGDAYELAYATDPTSAFGGILAFNRTLDAATAKAILDRQFVEVLIAPDYEPGALDYATKKANVRVLKIPHGAGLNNYDTKRIGSGLLMQSADNRGMSLGELSVVTKRAPSDAELADLLFAWRVAKYVKSNAIVYAKDSRTIGVGAGQMSRVVSAKIAALKAEEAKLTVAGSVMASDAFFPFRDGIDAAAAAGIQAVIQPGGSMRDGEVIAAADEHGLAMVFTGVRHFRH
>NC_010688.1|WP_012437210.1|579203_580049_-|hypothetical-protein
MHRSHALAALLAAAALLGGCKQAPAPTAAPATKAPATPAATPHLSRTARLEAFVRTRYGDKASLSADWAGEADGFKANSQVCAEQPAVVGEQVQQLLAVCHSLSDGGHGNPGLVDFFVLRGEGDGFKVVAEKLSDTFGSDGQPGSVDILHLGSDFYGFIVHSFWMGQGLLLESQDLVVPGPKGLANAGSLRAHIDNSGSISCEDDAREPDQTEAQCRAEAFNVDFTLDVDSSNIQARTWPLQIHEHGTDCGVALDTTHTFALDTKTWTYPFPNALQREDCR
>NC_010688.1|WP_011035757.1|595115_595388_-|DNA-binding-transcriptional-regulator-Fis
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGLT
>NC_010688.1|WP_012437218.1|595503_596805_-|DUF3426-domain-containing-protein
MSETPPPRRPLATFLRAAPAAPPLVPTPPVPSTEPADTAVPAPESAPVAAPLTTPVPAPVRPLPAPPRSPEAAPPDAAARAPDTLIAPARRDAPLSASPLPLPATPPAPVPAHSSAQTADPAMRRSADDRPTAAAAIAPAVVATSTAPLAPAAAAHATNAPDQPAIATQSAASAPGATVTQTPQASPPANQDGQPAPAAPQAAPEAEAGASTEAELEADPDDTATTPAPTSTSASASASASTSTSTSTSTPASPSSSPTPAPTLEPAFARRGLVRPRLRASGWQWAVLVGLVLLLGLQIVIADRARLAGDARWRPLVSAACAVARCALPPWRDPATLTLLTRDVRPLPAYPGVLQIQASFRNDARWAQAWPWLQLSLADADGRVIGTRVFSPQDYLGQAPATQDTLAPGQAVQVAFRVREPAASTAAFSFDFR
>NC_010688.1|WP_011035759.1|597090_597468_-|helix-turn-helix-transcriptional-regulator
MSKLYERVREARSLTKLTQEALAGELGVTRSAVAQWEMAEGTAPSVDNLIGLAKRSGMTFEYLATGRGERVFGPPVSSIAEEPAQYRHLDEQQRVLLSRFDALAPRQRTGLLDLLLAEGKPRRRR
>NC_010688.1|WP_012437220.1|597616_598111_+|hypothetical-protein
MCKRLWGWRAAPRPKPVPPTPWPAYSPLDPAVARFAGAARYLVWRRDQDWTAVIDGLHWGPALAPRWWAWRHRHWRLLAAGMGVLGSAGGLWLASASAGGWLLAWAALGLVELGMRASAVRQASRWRCAALQRAGWQPVTQLRAISVEDAVTTARIRSGELRPE
>NC_010688.1|WP_011035761.1|598112_599033_-|50S-ribosomal-protein-L11-methyltransferase
MPFLELTLPCTRATQPRFENALEDVGALAVTMLDAHAGTINERAILEPGVGEVRLWEETELTALFDGDSDPLMLLAALEAFDPSLDTRHATFRSVEDSAWERAWIDQFKPMRFGARTFIVPWNQDLPEEANTPDAAVVRLDPGLAFGSGTHQTTALCLRWLDALAGEGQLQGCSVLDFGCGSGILALAALKLGAANAVGVDYDPQALLATAENAERNAMEAQMQVYLPQDEPVQTYPVVLANILATALDALAETLAARVAPGGRIALSGIMQGQEQDLVQRYTPWFEHLHCEYDAEWVRIDGVRRH
>NC_010688.1|WP_011035762.1|599449_600370_+|hypothetical-protein
MPLVRARHLWLLLAPAALAAAWWQARPQTAGVAPAAVVETAAAHVAPTAGQPHAVPERSAALQLARGTAGEPPQDLYRYAQQLQQQVRAGDAQAGWRLSRVYDYCAPYAVSPAGYAADSAWIASQPAPGVAAMHAARERVAQRCAGFAPSDGLSPRVVAQQRQAAARAGSLAAEAAMLALGEPLQTTPGYKRALVQRVLASRDPEAYLALAPAMGARASGDDSLDGYVAGDQFAELAWQVAACRLGLDCSAQSTLVTSYCANAGICSRDSAQDFVSFVFDAAVPRQGADKVDEMVDTLVTRSETQS
>NC_010688.1|WP_011035763.1|600366_600732_+|hypothetical-protein
MNYRRLAHGAKFWFWVALFVAYSAAAVGIVMIDTADHRYQPLSVKRITVGADAQLRQHGASQVAAVYRASSGMPFASLPAGATFQVVWPDGSTETMTVVDPSSPSGAVPVPGSQQPAAKRR
>NC_010688.1|WP_012437222.1|601365_602733_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGPAASSDSYLNIPALIAAAEVTDAQAIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGGPLGDDIVANTKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEELRAEIGKVCVDACIRIGYRGAGTFEFLFEGGRFYFIEMNTRIQVEHPVTERITGIDLVCEQLRIAAGHKLSIKQSDIVLRGHAIECRINAEDPETFMPNPGLITAFHPPGGPGVRVDTHIYAGYKVPPNYDSMIGKLIVHGPDRETAIARMRVALSEMVVNGIKTNIPLQQRIMRDKGFQAGGQNIHYLEKRLAERKNKSIALV
>NC_010688.1|WP_011035765.1|602775_603162_-|four-helix-bundle-protein
MENRESAQRPHERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRRGAA
>NC_010688.1|WP_011035766.1|603179_603662_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKIKKLIDLLEESNLAEIEIKEGEESVRLARVPKGTQVMSAPMQQYAPAPAAPAPAATMPMQSPTEASTGGAKQGAALPEGHVLRAPMVGTFYTSPSPDKPAFVTVGQQVKAGETLAIIEAMKMFNPIEADISGTIVAVLSDTGQPVEFDQPLFVIG

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Crispr_ID: NC_010688_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010688_2

4972815-4972960

Orphan

Consensus_repeat	Method
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010688_2

>merge|NC_010688|2|4972815-4972960|CRISPRCasFinder
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGCCCCCCCCCTGATACCGCACCCTCATCCGCCCTTCGGGCACCTTCTCCCGGAGGGAGAGGGAAGATGCAGGCCCAGGCGCAGAACAAATCCGCACAGCACGGC

>NC_010688|2|2|4972815-4972960|CRISPRCasFinder
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	CCCCCCCCTGATACCGCACCCTCATCCGCCCTTCGGGCACCTTCTCCCGGAGGGAGAG
GGAAGATGCAGGCCCAGGCGCAGAACAAATCCGCACAGCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010688.1\|WP_011039225.1\|4964535_4965351_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NC_010688.1\|WP_157382688.1\|4972318_4972483_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178200
NC_010688.1\|WP_012439683.1\|4960292_4962452_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NC_010688.1\|WP_012439688.1\|4983272_4983824_-\|DUF1905-domain-containing-protein	unknown	unknown	gnl\|CDD\|379149
NC_010688.1\|WP_011039232.1\|4976481_4976700_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NC_010688.1\|WP_011039236.1\|4981718_4983080_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NC_010688.1\|WP_011039228.1\|4973045_4973753_-\|DUF4194-domain-containing-protein	unknown	unknown	gnl\|CDD\|372745
NC_010688.1\|WP_011039220.1\|4958475_4959738_-\|tetracycline-resistance-MFS-efflux-pump	unknown	unknown	gnl\|CDD\|340946
NC_010688.1\|WP_011039229.1\|4973739_4975209_-\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
NC_010688.1\|WP_016945064.1\|4976696_4977620_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|182548
NC_010688.1\|WP_012439682.1\|4957786_4958380_-\|biliverdin-producing-heme-oxygenase	unknown	unknown	gnl\|CDD\|350857
NC_010688.1\|WP_011039234.1\|4977616_4979068_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_010688.1\|WP_016945067.1\|4965394_4967455_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_010688.1\|WP_011039223.1\|4963091_4963481_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|235261
NC_010688.1\|WP_011039218.1\|4955885_4957790_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NC_010688.1\|WP_011039231.1\|4975964_4976408_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
NC_010688.1\|WP_011039222.1\|4962639_4962849_-\|hypothetical-protein	unknown	unknown	unknown
NC_010688.1\|WP_011039235.1\|4979064_4981365_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NC_010688.1\|WP_016945065.1\|4975228_4975831_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_010688.1\|WP_011039227.1\|4967896_4971913_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|227250

Protein	Function_ID	Function_description	E-value
NC_010688.1\|WP_011039225.1\|4964535_4965351_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	3.89647e-34
NC_010688.1\|WP_157382688.1\|4972318_4972483_-\|hypothetical-protein	gnl\|CDD\|178200	PLN02590, PLN02590, probable tyrosine decarboxylase.	7.36456e-06
NC_010688.1\|WP_012439683.1\|4960292_4962452_-\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.42471e-139
NC_010688.1\|WP_012439688.1\|4983272_4983824_-\|DUF1905-domain-containing-protein	gnl\|CDD\|379149	pfam13376, OmdA, Bacteriocin-protection, YdeI or OmpD-Associated. This is a family of archaeal and bacterial proteins predicted to be periplasmic. YdeI is important for resistance to polymyxin B in broth and for bacterial survival in mice upon oral, but not intraperitoneal inoculation, suggesting a role for YdeI in the gastrointestinal tract of mice. Production of the ydeI gene is regulated by the Rcs (regulator of capsule synthesis) phospho-relay system pathway independently of RcsA, and additionally transcription of the protein is regulated by the stationary-phase sigma factor, RpoS (sigma-S). YdeI confers protection against cationic AMPs (Antimicrobial peptides) or bacteriocins in conjunction with the general porin Omp, thus justifying its name of OmdA, for OmpD-Associated protein.	2.53507e-20
NC_010688.1\|WP_011039232.1\|4976481_4976700_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	2.48462e-12
NC_010688.1\|WP_011039236.1\|4981718_4983080_-\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0
NC_010688.1\|WP_011039228.1\|4973045_4973753_-\|DUF4194-domain-containing-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	3.08309e-44
NC_010688.1\|WP_011039220.1\|4958475_4959738_-\|tetracycline-resistance-MFS-efflux-pump	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.33602e-135
NC_010688.1\|WP_016945064.1\|4976696_4977620_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	6.15277e-73
NC_010688.1\|WP_012439682.1\|4957786_4958380_-\|biliverdin-producing-heme-oxygenase	gnl\|CDD\|350857	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria. This subfamily contains bacterial heme oxygenase (HO, EC 1.14.14.18), where HO is part of a pathway for iron acquisition from host heme and heme products. Most of these proteins have yet to be characterized. HO catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes heme oxygenase (pa-HO) from Pseudomonas aeruginosa, an opportunistic pathogen that causes a variety of systemic infections, particularly in those afflicted with cystic fibrosis, as well as cancer and AIDS patients who are immunosuppressed. Pa-HO, expressed by the PigA gene, is critical for the acquisition of host iron since there is essentially no free iron in mammals, and is unusual since it hydroxylates heme predominantly at the delta-meso heme carbon, while all other well-studied HOs hydroxylate the alpha-meso carbon. Also included in this family is Neisseria meningitidis HO which is substantially different from the human HO, with the reaction product being ferric biliverdin IXalpha rather than reduced iron and free biliverdin IXalpha. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.	8.04641e-46
NC_010688.1\|WP_011039234.1\|4977616_4979068_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	5.92538e-66
NC_010688.1\|WP_016945067.1\|4965394_4967455_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.66091e-93
NC_010688.1\|WP_011039223.1\|4963091_4963481_-\|YchJ-family-protein	gnl\|CDD\|235261	PRK04233, PRK04233, hypothetical protein; Provisional.	3.39194e-82
NC_010688.1\|WP_011039218.1\|4955885_4957790_-\|GAF-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.24122e-124
NC_010688.1\|WP_011039231.1\|4975964_4976408_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	2.23838e-14
NC_010688.1\|WP_011039229.1\|4973739_4975209_-\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	1.98096e-147
NC_010688.1\|WP_011039235.1\|4979064_4981365_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	3.73506e-75
NC_010688.1\|WP_016945065.1\|4975228_4975831_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	7.10518e-110
NC_010688.1\|WP_011039227.1\|4967896_4971913_-\|ATP-binding-protein	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	3.04333e-176

>NC_010688.1|WP_157382688.1|4972318_4972483_-|hypothetical-protein
MGARKANCVSNGNGNGNGNGNGNGNGNGKNSSNGSSSSSGNNANNSNSGEKKNT
>NC_010688.1|WP_011039227.1|4967896_4971913_-|ATP-binding-protein
MNSQSNLSPASPGASLFAETLAEQRAQQFRMRRLQVHNWGTFNGLTEVPIAEKGFLFVGRSGSGKSTLLDAMSALLTPPSIVDFNAAAREAERSGRDRSLVSYVRGAWADQQDSASGEIATQYLRKGATWTALVLEYRNAQGEAVSLVRLFWIAGSGNAAADVRRHYMVVPRAFDVASELEGFDLDLRKLKARLGEDVAHFDGFAGYAERFRHALGIGNDMALRLLHKTQSAKNLGDLNAFLRGFMLDEPRTFEAADRLVEDFAELDGAHHAVVTARRQVETLSPAREHHAALMALRRSVGELRELQLGVDSYREQQRLALLEARLQEVDSQDRGLAGEEGQRRESLDNHEQKLAGLEREQRAAGGEQIEELERERVRVERERDERLRRRAQIEQACRQLGTALAAGASGFAAQVAHAQGVLDGGKQHASTLDEAIAERMGERRDDERRFAEIRAELDALKKAPSSMPAPMQALRARLCDDTGIAESALPFVGELLQVREDQVAWRGAIERVLHGFAQSLLVDERHYAQVSEWVNRTHIGTRLVYFRVRRNDELHSRRVDPNALPGKLQLREHAFTEWLRNELTRRFDYACVDNAAALRNADRAITREGQVKHPGDRYEKDDRHAVNDRKRWLLGHDNRDKLKVFEREAQALAQRIASCDADVAALRKQREQDQEKRLAAHTLVERDWDEIDVGPKLQRLSDIDEQLQQLREGDSGLRALGQAIDTARTLRDQAKRTYEDVRLERAQLARERVRLEQQQAACAGRAGTAALTPTQLQGLQERLAALAPLSLDTLEAHFRVVERGLAEQLAESQGRDSRLSAQLLECFRRYCQQWPEDSGDFTVSLASADDFLARLDRLESDGLPRHEHRFFDLLQTQSKNNLLALQRHTAEAHKGIKQRMDEVNASLEQVPFNRDTILTIEVSDRRLAEVQEFQQQLRAVLSHQQTEDRALAEAQFATLRTLVARLGAQEPEARRWREQVLDVRLHVEFIGVELDAQTRAQVEIYRSGAGKSGGQRQKLATTCLAAALRYQLGGEDGELPRYCAVVLDEAFDKADNEFTALAMNIFENFGFQMVVATPLKSVMTLEPFIGGACFVEISGRHNSGVLLIEYDEQAQRLKLPERSRGEEAAAPPAEQGGAVAPGERAERAPVIAVESGHAASVHLAETTAVLVQGDAVTDGQSRGHKRTRAAATASTAAPVPAPAGKRSTSAAATSATAAPATGTADASNARRKQAATPDTPPKPTKPASTRSGSSGTPAAKRTTTAKAAAVLKASNATPAVAAKRTGKAPKRVSKPASAQQVAKPVSKSKPTAKPATAASAKSRVASTRGSAPKARSKR
>NC_010688.1|WP_016945067.1|4965394_4967455_-|TonB-dependent-siderophore-receptor
MTPLPTRRHLLFVSLVAAFPAAAQEASLLDAIVVSEKRALYRPEKAAGATRTQTPVERIPQAIQVVPRSVIDEQQLTRLVDVVANVSNVQPGGTQGNRSETFVIRGFEASSYAVDGILLNPAQNFTETVRDLANVAQVEVLKGPAAVLYGRGEPGGVINLVTLRPDAVFGGNASVQVAEHGLRRVQSSITGPLSPTLSARLSAAVQQTGSFRDAQADGDRVFVSPSLAWRPNERLRADLDIEYTRQTSPGDRGLVAIDGVVRGPAQRSFGEPWSRNRGISRTARGRIEVDATDWLTLRQIVNHQDGDSGRGVADFTGFSADRAFLQRRAVRQDQQVRATTSQTEALARFDTGPLRHQVLAGAEYVDAHRHTDEARAPLARISVRTPVQGALPGTYVPAREIAVDARYAALYVQDQISLGERWDVLAGVRWDDVQQTTLDNGSRTREDGRRASPRLGVVWKAAPQLSLYANTSTSFRPRSASVFAGGSAPPETGRQYELGMKSALLDNRVLATVAAFQITKDNVATADPNNDGFVLVTGQQRVRGLELDVTGELTPNWRLILGAGYLDAQVTRDTVIATGNRLRGVPRVSASLWSTYHVASGPLYGLTLGAGAVHVGEREGDLANSYRIPGYTRFDASAAYRFGGRYQLALLLRNLGNRFYIEQPVTQTTNYPGAPRTLSATLSMEF
>NC_010688.1|WP_011039225.1|4964535_4965351_+|TSUP-family-transporter
MRRYAVAPVVRSTALLELIPTELPWLLCIAFVAGLVDAAVGGGGLIQLPGLFATLPQQAPSLILGTNKFSAMFGTGASAWRYARNVRFPWRPVLYATAAAFTFSFLGATAVSLLPKQAVRPLILVLLIAMLGYTLIKKDFGALHRPRAIGRRELVTALAMGAAIGFYDGFFGPGTGSFLIFLFIRFFGLDFLRASAAAKVVNLATNLAALSFFLPTGQVMLAVGVPMAAANVAGAVAGTRLALRGGTPLIRQLFLVLVVVLIGKMGWDLLH
>NC_010688.1|WP_011039223.1|4963091_4963481_-|YchJ-family-protein
MSPSTPTDPCPCGRAAGYAQCCGQYHAGAAAPDAETLMRARYSAYVRRNVDYLLASWHPSTRPAELALDEGGRTTWLGLNVQRAIATGADTAEVVFLARYRIGGGSAVRMTEHSRFVREDGHWYYLDAR
>NC_010688.1|WP_011039222.1|4962639_4962849_-|hypothetical-protein
MATFNLWQWLLLALVVFAIVLPTLVAAAMIWFGPRHDTPRLPRSVRRSGDATGATPALSLLSGITGDGS
>NC_010688.1|WP_012439683.1|4960292_4962452_-|lytic-murein-transglycosylase
MTPLWRALPLLLGLAPFAAWADPAFDRCLAGLQTQAAAKGVDAASFQRFTAGLAADPSVLPLLDAQPEFTTPIWDYLASLVDSQRVSDGQAMLVTHRELLTRLSEQTGVDPATIVAVWGVESDYGRITGKRPLLVSLATLSCAGRRQPFFRGEFLALLGLLQQGDLAPEGLTGSWAGAFGQTQFMPSTYARIAIDGDGDGRRDLVASIPDALASTANYLVKAGWERARPWGMEVRLPAGLDANKAGRTRRQPLQAWQAAGLLGTDGKPLAPTGLPAETAAALLLPAGPTGPAFLVFRNYDAIYAYNAAESYALSIALLADRLRGGAGLVASWPTDDPGLGRPERRQLQQLLLARGHQIGEADGMVGTATRRAIQVEQTRLGLQPADGRAGQRILTALRTAPPVTGAAVRGTAFTLPAAYPAFVQSPIVQKASPMSDVTGLRTGDFHGFPSLLIDTPYSTAAISLFGGQLLSFVPKGGQDVMWLSPTAKQPPTPIRGGAPVCWPYFGRQDQTGDVPAHGFVRTVPWQLTESRREDDGTLVLTLTPPTFDDLALRLHMTLRIGRTLEQRLVTENVSKAPVRFTQALHNYFRVGDALKVSVQGLDGLDYLDKYENYAIAHRQQGDWSLRDPRDPGRSDRIYTNAGGHYTLTDPVLGRRIDIRTEGSRSLVAWNPGEDAASKMADVGTGWRDYVCLEAANAGPDVIELAPGASHTLGQTISVE
>NC_010688.1|WP_011039220.1|4958475_4959738_-|tetracycline-resistance-MFS-efflux-pump
MSISPDSASAPAPGRRRAALIFIFITVLIDVLSFGVIIPVLPDLVRQFTGGDYAAAAGWIGWFGFLFAAIQFVCSPLQGTLSDRYGRRPVILLSCLGLGLDFILMALAHTLPMLLLARVISGVCSASFSTANAYIADVTPADKRAGAFGMLGAAFGIGFVAGPLIGGWLGSIGLRWPFWFAAGLALLNVLYGWFVLPESLPPERRTARLDWSHANPFGALKLLRRYPQVFGLASVVFLANLAHYVYPSIFVLFASYQYHWGPREVSWVLAGVGVCSIIVNAVLVGRIVRWLGERRALLLGLGCGVIGFVIYGLAGSGRTFLLGVPISAFWAVAAPAAQALITREVGADAQGRVQGALTSLVSLGGIAGPLLFANVFAWFIGSGAPLHLPGAPWLLAGLLLAAGWFMAWKRAGRSPALAQG
>NC_010688.1|WP_012439682.1|4957786_4958380_-|biliverdin-producing-heme-oxygenase
MRSDTPVAPLSAALALRHATQEAHTRVEAVPLMQALGQGHIDAETYAQVLRRHHRLLAGFEEQLSDWLVTLVGSGWQYRRRVPALREDLRVLGQPVDAAVPPPPASSEAVRWGMLYVIEGSQLGGRVIARMLRKRQPGLAHALHYFELADEDPAGWRRFQAVLEQRLQSAAARADAIAGAQAMFAHFHTCLAAEARP
>NC_010688.1|WP_011039218.1|4955885_4957790_-|GAF-domain-containing-protein
MSTATNPLDLDVCAREPIHIPGLIQPYGVLLVIDPADGRIVQASTTAADLLGVPMAALLGMPYTQVLTLPEAQPFAVDDQPQHLMHAEVRFPQRATPPDSAWVAAWHLYPQQWLVEMEPRDARLLDVTLREAMPLLRSVERDPGIAEAAVRVAKGLRSLIGFDRVMIYRFDEEWNGDIIAEARKPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVGYQPSPIQPTVHPQLGTPVDLSDVSLRSVSPVHLEYLANMGVTATLVASIVVNDALWGLISCHHYSPHFTNHAMRDVTDAVARTLAGRIGALQAVARARLESVLLTVREKLITDFNDAEHMTVELLDDMAPDLMDVVDADGVAIFHGNDISRHGTTPDVAALRRIRDHIESEHHDALREDAVGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQIQQIKWAGNPQLAKLEDIPNSRLSPRKSFDLWQQTVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGTANAAHRLLFVNTAFADVCGSDVAELIGRELQTLYASDAPRANVELLQDALRNGRAAYVTLPLQVSDGAPVYRQFHLEPLPSPSGVTAHWLLQLRDPE
>NC_010688.1|WP_011039228.1|4973045_4973753_-|DUF4194-domain-containing-protein
MNWSEQAALDAHDDDDADAHASALRLPASDAASAAQGGALFLGDTGTLPFDARRALCQLLAGPSIDAQRHGGLWPALLRNEVAVRQVLCELFLELVLDREGGVAFTRQADTAELESPTLLRSAPLTFIESVLLLFLRQQLAEADTRGERAVVDEAQLVEALSVYEKNVSTDRAGFTRRVMTAIGKMRENQLLSRLRGSEERYEVSPVLKLLFSAEDVQALVVAYRELREGEVAAD
>NC_010688.1|WP_011039229.1|4973739_4975209_-|DUF3375-domain-containing-protein
MKHQARIAGYRHLRDQPAWKLLAADHAPELIGLLQTLLMDGERRLPSAVLHARLQRQLDALRGDELSRELPRTAQAYLAHWLAQGWLERRLPEGAAEEEYELSRAATQAIRFIAGLRESGSSATESRLSLVIQQLVQLAGQTEADPDARLAALRAERERIDAEIERVAAGRVGALDGKRALERTRDLIHLSDELAEDFHRVRDDFEQLNRQFRERIIDDEGARGDVLEQLFNGVDVIADSEAGRTFEAFWSLLNDTQQSSQLDQALDALLARGFARKLDRRERAFLRGLTGTLLERGGEVHTVMQHFARSLRGFVQSRGYLEQRRLNQLLKQAQGEALHLRESLHATTATGYTQALSGSRLRSLSQWRLHDPRLTQVDGRVYAADAAEISLDSVGDLVAQSEIDVRSLRRDLHALLGERPRLTIGDALQQRPAVQGLGSVIGYLSLGTRHGLVIDGHMETVQWEGGDGTLRRARIPLVWFTREKRNELV
>NC_010688.1|WP_016945065.1|4975228_4975831_-|GTP-cyclohydrolase-I-FolE
MSQSDQPDSSVTQAQAEEAVRTLLRWAGEDPAREGLLDTPRRVAEAYGDWFSGYREEPRAYLERTFEEVAGYDELIVLRDISYESHCEHHMAPIIGKVHVGYLPRGKVVGISKLARVVESYARRFQVQEKMTAQIAQCIQDVLQPRGVGVVVEGAHECMTTRGIHKRGVSMVTSKMLGSFREDARTRAEFLQFIEVGGKR
>NC_010688.1|WP_011039231.1|4975964_4976408_+|MarR-family-transcriptional-regulator
MTTYLPPRAQLSAGLLVASRQWQRLADQAFGEFGLSSACTGPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLCAQALVRREADSSDRRANQLWLTEAGQALVGQIEARLVALRAEVFGALSDAEVEVVLKLWGLIAEANARLP
>NC_010688.1|WP_011039232.1|4976481_4976700_+|DUF1656-domain-containing-protein
MWPMYGEFSLYGVFVPTLLALMTLAYLLNSAVGALLTRAGAYRHIWHPALFNLALYIALLGGLFSLMRWMQS
>NC_010688.1|WP_016945064.1|4976696_4977620_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKLIKTAGPALLTLAMVVVAAVVLQHLWRYYMDAPWTRDAHVGADVVQVAPDVSGLVEQVAVADNQAVTRGQLLFVVDRARYAIALEQARAALAERQATLTQLRREIARDRSLQDLVAAEDAEVRRSNVQKAQAAVATAQSAVDLAQLNLDRTEVRSPADGHISDRTVRVGDYVSAGRPVVAVLDTGSFRVDGYFEETRLQGVHPGQRVDVHLMGEPVTLHGHVQSIAAGIEDRYRTGSAGALPNVTPAFDWVRLAQRIPVRIALDAVPAQVQLIAGRTATVTILPDAARPAAATAPARVQAKAAP
>NC_010688.1|WP_011039234.1|4977616_4979068_+|efflux-transporter-outer-membrane-subunit
MSRAALRHLGLAAALTALSACSTVGPDYALPREAVYNRPAANAPFLDTGNAQVQPGAPLPARWWALYQDPMLDGLVEQALRDNVELKVASANLRRAAAVYEQALDAGGFDYEVEAGVSRAQISAEAFLQEEKLPVFNLADGKFGVSYQFDLFGKLQHGAEAAHADTQAAQAAIDLARVSVAAQVAGSYVEICNANHELHVAEHSLQLQQRSRTVTQRLISAGRGTPPDLARATAQVAMLEAALPPLRARRQAAGYALAALLGKTPGELPAGVDSCAHAPALQQPIPIGDGRTLLARRPDVRQAERRLAAATARIGVATAELYPDIRLGGSIGATGLLADIGEPATHAWSIGPLISWTLPSSGAHARVRATEAGADAAVAQFDHTVLQALREVQTTLSRYAQDLDRLRLLEQAQQQAELASSQNRRLYQGGRTPYLSSLDAERTLATADMTLADAQAQVSKDQIQLFLALGGGWEPATDATAAR
>NC_010688.1|WP_011039235.1|4979064_4981365_+|FUSC-family-protein
MNALLRDRQAWLFSAKTFAAAIAALYVGLAGNLSRPYWAMATVYIVSQPLLGPTRAKGVYRVLGTLLAGAATLVMLPNLVETPLLLSAAMALWLSACLFLALLNRGPRGYAFLLAGYTTAFIGFPAVTAPEGIFDTVVARSEEIILGTVMAVLFAALVFPASVRPMLTARIGNWMQDAAQWCRQVLQRGPAQAPRNRLAADLVQFEALIAFVRHDDPRHAGAAPALEHLRARMLLLLPVLSSIADRLDALHAASRALPGELIALLEDIGAWVERAGPDAAQTAAEQPEMISAGDADADAAVASLRARIAALRPAVDDDLQHLLLASLLLRLEELLDLWQDCRALESALLQGTALPALPAAARDRAVPETDAGAGAEVRLRSTVPQHVGKSGGETSPGAPAHADTAPSAASSQPASLLQRLTRSSSRLSTDAPATAGDARHIDYGMAAFSALSAGFALMAYCVLWIGIDWEGGGNGAMMAAVTAAFFAAQDDPAPSMVSFLTWAVVASVVAGIYLFGIFPAIHDFPMLVLVLAAVFLPLGALLHRPKTMLIALPLVVNLTALLSLQNTYNANIQSFVNAAVAMVLGIGFAVVLTRLFRSVGAEWSARRLVRQGWRTLAAAADGRGAQDRHQFAARMLDLLGLLAPRLAVAPPGSDLASVDMLTEIRVGLNILQLRRARHGLPPASIAAVDAILADVATHYRQQVAHKRPLPGPDTLRTRLDASLARVGQVPAGTHRDEALLGLIGLRSSLFVDATVPDNATGHPQLA
>NC_010688.1|WP_011039236.1|4981718_4983080_-|MFS-transporter
MSAPPSSPIAAGSGAAPGSLRRSVSNTLKGSAGNLVEWYDVYVYSVFATYFESQFFSKEDKNATMFVWAIFAMTFLMRPIGAWYFGRFADRYGRRLALTISVSMMALCSFVIAITPTVSTIGIAAPIILLLARLLQGFATGGEYGTSATYMSEAAIPGRRGFLSSFHYVTLVGGHVLAQTTLLVMLHFFDAPQVSEWGWRVAFGLGGIGALVVFWLRQTMDESLSSESIADSRTGKAKASGSMRELFVNQWRPLLLCFLITAGGTIAFYTYSVTGPKMIQTAFAGGDVMAGTIINLVALTVLMLMQPVGGWLSDIVGRKSLLVFFGIGGVLYTWFLVMELPKQTDWLTAFAILTVGFVILTGYTSINAVVKAELFPTHVRALGVGLGYALANSAFGGTAPLLYQASLKTGHVSEFVIYATAVIAVSLVVYIFFLTNKGSNWLDHEDVMHTRKR
>NC_010688.1|WP_012439688.1|4983272_4983824_-|DUF1905-domain-containing-protein
MTEGKAAIRCKVTLLEPATPAGASWVFLLLTSAVSNELHTRSMVSVRGSLAGHPLQATLQPDGQGGHWLKLDAALQRAAGVAAGDTVTLEIAPVEVEPEPVVPDDLHAALAAHPAAQATWNDITAVARRDWIFWVTSGKKAETRSKRIATACDMLGSGKRRACCFDRSGMYSKSLSAPTPKAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010688_1	1.20\|592160\|25\|NC_010688\|CRISPRCasFinder	592160-592184	25	NC_010688.1	592304-592328	1	0.96
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NC_010688.1	592400-592424	2	0.92
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NC_010688.1	592688-592712	2	0.92
NC_010688_1	1.19\|592112\|25\|NC_010688\|CRISPRCasFinder	592112-592136	25	NC_010688.1	592256-592280	2	0.92
NC_010688_1	1.20\|592160\|25\|NC_010688\|CRISPRCasFinder	592160-592184	25	NC_010688.1	592880-592904	2	0.92
NC_010688_1	1.21\|592208\|25\|NC_010688\|CRISPRCasFinder	592208-592232	25	NC_010688.1	592784-592808	2	0.92

1. spacer 1.20|592160|25|NC_010688|CRISPRCasFinder matches to position: 592304-592328, mismatch: 1, identity: 0.96

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcacgcaagggcagcgac	Protospacer
*********************.***

2. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to position: 592400-592424, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggcgacagttcg	Protospacer
******.******** *********

3. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to position: 592688-592712, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggggaaagttcg	Protospacer
******.*********** ******

4. spacer 1.19|592112|25|NC_010688|CRISPRCasFinder matches to position: 592256-592280, mismatch: 2, identity: 0.92

gcagacctcgggtagcgagagttcg	CRISPR spacer
gcagacctccggtggcgagagttcg	Protospacer
********* ***.***********

5. spacer 1.20|592160|25|NC_010688|CRISPRCasFinder matches to position: 592880-592904, mismatch: 2, identity: 0.92

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcgcgtaagggcagtgac	Protospacer
*********.**.************

6. spacer 1.21|592208|25|NC_010688|CRISPRCasFinder matches to position: 592784-592808, mismatch: 2, identity: 0.92

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ctccaccgccggtgccgacagcacc	Protospacer
*** *********** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010688_1	1.1\|591248\|25\|NC_010688\|CRISPRCasFinder	591248-591272	25	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	51121-51145	3	0.88
NC_010688_1	1.2\|591296\|25\|NC_010688\|CRISPRCasFinder	591296-591320	25	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	250941-250965	3	0.88
NC_010688_1	1.2\|591296\|25\|NC_010688\|CRISPRCasFinder	591296-591320	25	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	460308-460332	3	0.88
NC_010688_1	1.2\|591296\|25\|NC_010688\|CRISPRCasFinder	591296-591320	25	NZ_CP023450	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence	132960-132984	3	0.88
NC_010688_1	1.2\|591296\|25\|NC_010688\|CRISPRCasFinder	591296-591320	25	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	175194-175218	3	0.88
NC_010688_1	1.2\|591296\|25\|NC_010688\|CRISPRCasFinder	591296-591320	25	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	41928-41952	3	0.88
NC_010688_1	1.2\|591296\|25\|NC_010688\|CRISPRCasFinder	591296-591320	25	NZ_CP041018	Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence	158454-158478	3	0.88
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	NZ_CP010990	Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence	69855-69879	3	0.88
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	16607-16631	3	0.88
NC_010688_1	1.8\|591584\|25\|NC_010688\|CRISPRCasFinder	591584-591608	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	378085-378109	3	0.88
NC_010688_1	1.8\|591584\|25\|NC_010688\|CRISPRCasFinder	591584-591608	25	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	143684-143708	3	0.88
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	243232-243256	3	0.88
NC_010688_1	1.14\|591872\|25\|NC_010688\|CRISPRCasFinder	591872-591896	25	NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	152062-152086	3	0.88
NC_010688_1	1.14\|591872\|25\|NC_010688\|CRISPRCasFinder	591872-591896	25	NZ_CP026329	Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence	107106-107130	3	0.88
NC_010688_1	1.14\|591872\|25\|NC_010688\|CRISPRCasFinder	591872-591896	25	NZ_CP005987	Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence	163970-163994	3	0.88
NC_010688_1	1.15\|591920\|25\|NC_010688\|CRISPRCasFinder	591920-591944	25	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	69011-69035	3	0.88
NC_010688_1	1.15\|591920\|25\|NC_010688\|CRISPRCasFinder	591920-591944	25	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	911990-912014	3	0.88
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	27409-27433	3	0.88
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	209397-209421	3	0.88
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	11418-11442	3	0.88
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	65195-65219	3	0.88
NC_010688_1	1.21\|592208\|25\|NC_010688\|CRISPRCasFinder	592208-592232	25	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	50549-50573	3	0.88
NC_010688_1	1.1\|591248\|25\|NC_010688\|CRISPRCasFinder	591248-591272	25	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	859763-859787	4	0.84
NC_010688_1	1.1\|591248\|25\|NC_010688\|CRISPRCasFinder	591248-591272	25	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	461680-461704	4	0.84
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	NZ_CP046256	Sphingobium sp. CAP-1 plasmid p3, complete sequence	125194-125218	4	0.84
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	NZ_CP022748	Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence	107885-107909	4	0.84
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	59811-59835	4	0.84
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	MN204501	Gordonia phage Chikenjars, complete genome	29380-29404	4	0.84
NC_010688_1	1.3\|591344\|25\|NC_010688\|CRISPRCasFinder	591344-591368	25	NC_048793	Gordonia phage Kenosha, complete genome	29930-29954	4	0.84
NC_010688_1	1.5\|591440\|25\|NC_010688\|CRISPRCasFinder	591440-591464	25	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	351573-351597	4	0.84
NC_010688_1	1.5\|591440\|25\|NC_010688\|CRISPRCasFinder	591440-591464	25	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	52264-52288	4	0.84
NC_010688_1	1.6\|591488\|25\|NC_010688\|CRISPRCasFinder	591488-591512	25	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	395981-396005	4	0.84
NC_010688_1	1.9\|591632\|25\|NC_010688\|CRISPRCasFinder	591632-591656	25	NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	94006-94030	4	0.84
NC_010688_1	1.9\|591632\|25\|NC_010688\|CRISPRCasFinder	591632-591656	25	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	37310-37334	4	0.84
NC_010688_1	1.9\|591632\|25\|NC_010688\|CRISPRCasFinder	591632-591656	25	NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	33091-33115	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	68382-68406	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	186792-186816	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	315946-315970	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	73358-73382	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	41925-41949	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1577504-1577528	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	68399-68423	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP045095	Streptomyces sp. GY16 plasmid unnamed1, complete sequence	1473-1497	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	135413-135437	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1505773-1505797	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	70068-70092	4	0.84
NC_010688_1	1.13\|591824\|25\|NC_010688\|CRISPRCasFinder	591824-591848	25	MN062720	Microbacterium phage FuzzBuster, complete genome	23698-23722	4	0.84
NC_010688_1	1.17\|592016\|25\|NC_010688\|CRISPRCasFinder	592016-592040	25	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	156372-156396	4	0.84
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5969600-5969624	4	0.84
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1420670-1420694	4	0.84
NC_010688_1	1.18\|592064\|25\|NC_010688\|CRISPRCasFinder	592064-592088	25	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	152689-152713	4	0.84
NC_010688_1	1.21\|592208\|25\|NC_010688\|CRISPRCasFinder	592208-592232	25	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	118257-118281	4	0.84
NC_010688_1	1.21\|592208\|25\|NC_010688\|CRISPRCasFinder	592208-592232	25	NZ_CP021815	Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence	49071-49095	4	0.84
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	694675-694699	5	0.8
NC_010688_1	1.11\|591728\|25\|NC_010688\|CRISPRCasFinder	591728-591752	25	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	123372-123396	5	0.8
NC_010688_1	1.14\|591872\|25\|NC_010688\|CRISPRCasFinder	591872-591896	25	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	281685-281709	5	0.8
NC_010688_1	1.14\|591872\|25\|NC_010688\|CRISPRCasFinder	591872-591896	25	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	426616-426640	5	0.8
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	40969-40993	5	0.8
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	38468-38492	5	0.8
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	16093-16117	5	0.8
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	37490-37514	5	0.8
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	21314-21338	5	0.8
NC_010688_1	1.16\|591968\|25\|NC_010688\|CRISPRCasFinder	591968-591992	25	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	54715-54739	5	0.8
NC_010688_1	1.21\|592208\|25\|NC_010688\|CRISPRCasFinder	592208-592232	25	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	297223-297247	5	0.8

1. spacer 1.1|591248|25|NC_010688|CRISPRCasFinder matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 3, identity: 0.88

gctcactggcgccgatcagagtcag	CRISPR spacer
acacacgggcgccgatcagagtcag	Protospacer
.* *** ******************

2. spacer 1.2|591296|25|NC_010688|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

3. spacer 1.2|591296|25|NC_010688|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

4. spacer 1.2|591296|25|NC_010688|CRISPRCasFinder matches to NZ_CP023450 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

5. spacer 1.2|591296|25|NC_010688|CRISPRCasFinder matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

6. spacer 1.2|591296|25|NC_010688|CRISPRCasFinder matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

7. spacer 1.2|591296|25|NC_010688|CRISPRCasFinder matches to NZ_CP041018 (Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

8. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatccaacggcatc	Protospacer
****************.**.***.*

9. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcttggccggatccgccagcagc	Protospacer
**** ************ ***** *

10. spacer 1.8|591584|25|NC_010688|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

11. spacer 1.8|591584|25|NC_010688|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

12. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 3, identity: 0.88

gcagacggcgcaggacggcagcgac	CRISPR spacer
ggagacggtgcaggacggcagctac	Protospacer
* ******.************* **

13. spacer 1.14|591872|25|NC_010688|CRISPRCasFinder matches to NC_015851 (Acidithiobacillus caldus SM-1 megaplasmid, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

14. spacer 1.14|591872|25|NC_010688|CRISPRCasFinder matches to NZ_CP026329 (Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

15. spacer 1.14|591872|25|NC_010688|CRISPRCasFinder matches to NZ_CP005987 (Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

16. spacer 1.15|591920|25|NC_010688|CRISPRCasFinder matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 3, identity: 0.88

ctccaccgctggtgcggacagcacg	CRISPR spacer
ccccgccgctggtgcggacatcacg	Protospacer
*.**.*************** ****

17. spacer 1.15|591920|25|NC_010688|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 3, identity: 0.88

ctccaccgctggtgcggacagcacg	CRISPR spacer
cgccaccgctggggcggacagcccg	Protospacer
* ********** ********* **

18. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggctcggacagcact	Protospacer
******** **** **********.

19. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagcgac	Protospacer
******** *************. *

20. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

21. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

22. spacer 1.21|592208|25|NC_010688|CRISPRCasFinder matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cccgaccgccggtgcggacagccgc	Protospacer
*.********************  *

23. spacer 1.1|591248|25|NC_010688|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

24. spacer 1.1|591248|25|NC_010688|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

25. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to NZ_CP046256 (Sphingobium sp. CAP-1 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

26. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to NZ_CP022748 (Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

27. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

28. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to MN204501 (Gordonia phage Chikenjars, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcaggatccaacagcacc	Protospacer
  ******* ******.********

29. spacer 1.3|591344|25|NC_010688|CRISPRCasFinder matches to NC_048793 (Gordonia phage Kenosha, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcgggatccaacagcacc	Protospacer
  ******* ******.********

30. spacer 1.5|591440|25|NC_010688|CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

31. spacer 1.5|591440|25|NC_010688|CRISPRCasFinder matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

32. spacer 1.6|591488|25|NC_010688|CRISPRCasFinder matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.84

ggaaaccgccggtgcagacagctcg	CRISPR spacer
cagaaccgccggtgcagacaggtcg	Protospacer
 ..****************** ***

33. spacer 1.9|591632|25|NC_010688|CRISPRCasFinder matches to NC_008537 (Arthrobacter sp. FB24 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

34. spacer 1.9|591632|25|NC_010688|CRISPRCasFinder matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

35. spacer 1.9|591632|25|NC_010688|CRISPRCasFinder matches to NC_008539 (Arthrobacter sp. FB24 plasmid 3, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

36. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

37. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgccggacggcagcgcc	Protospacer
  ********* *********** *

38. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

39. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcaggcggcgcaggacggcaggatc	Protospacer
****.**************** . *

40. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcagacggcccagcacggcagcgga	Protospacer
********* *** *********.

41. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

42. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagccggcgcaggacggcatcgac	Protospacer
  ** *************** ****

43. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP045095 (Streptomyces sp. GY16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gaggacggcgcaggacgccagcgag	Protospacer
* .************** ******

44. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

45. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

46. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

47. spacer 1.13|591824|25|NC_010688|CRISPRCasFinder matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 4, identity: 0.84

gcagacatccggcaacgacagctcg	CRISPR spacer
cgagacatccggcatcgacaggtcg	Protospacer
  ************ ****** ***

48. spacer 1.17|592016|25|NC_010688|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

ccaaaccgcgcgcaagggtagcgac	CRISPR spacer
tgaaaacgcgcgcaagggtagcgtc	Protospacer
. *** ***************** *

49. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
cagcaccgccgacgcggacagcacc	Protospacer
*   *******.*************

50. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagggac	Protospacer
******** ************ . *

51. spacer 1.18|592064|25|NC_010688|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctccatcgccggcgcggacagcaaa	Protospacer
*** *.*****************

52. spacer 1.21|592208|25|NC_010688|CRISPRCasFinder matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ggcgaccgcctgtgcggccagcacc	Protospacer
  ******** ****** *******

53. spacer 1.21|592208|25|NC_010688|CRISPRCasFinder matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cacgaccgccggtgcggacagacct	Protospacer
* *******************  *.

54. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgcgacggcgcaggacggcagcaag	Protospacer
   *******************.*

55. spacer 1.11|591728|25|NC_010688|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgct	Protospacer
  ************** ****** .

56. spacer 1.14|591872|25|NC_010688|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
aggaaccgcccgtaccggcagcccc	Protospacer
  .*******************  *

57. spacer 1.14|591872|25|NC_010688|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ggaatccgcccgtaccggcagcgtt	Protospacer
  ** ****************** .

58. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

59. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

60. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

61. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

62. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

63. spacer 1.16|591968|25|NC_010688|CRISPRCasFinder matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

64. spacer 1.21|592208|25|NC_010688|CRISPRCasFinder matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 5, identity: 0.8

ctcgaccgccggtgcggacagcacc	CRISPR spacer
aaagaccgccggtgcggacagaact	Protospacer
   ****************** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

629054 : 691361

Leptospira_phage(50.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942062.1\|629054_629852_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012437231.1\|631613_632696_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	2.8e-83	48.9
WP_173376891.1\|633139_633898_-	hypothetical protein	NA	NA	NA	NA
WP_011038672.1\|634062_635577_-	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_012437233.1\|635744_637922_+	hypothetical protein	NA	NA	NA	NA
WP_012437234.1\|638295_640752_+	hypothetical protein	NA	NA	NA	NA
WP_012437235.1\|640962_641880_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_012437236.1\|641879_642398_-	hypothetical protein	NA	NA	NA	NA
WP_011038677.1\|642873_643383_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012437238.1\|643395_644421_+	FecR domain-containing protein	NA	NA	NA	NA
WP_012437240.1\|644954_647483_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012437241.1\|647514_649137_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_012437242.1\|649133_649454_+	DUF3649 domain-containing protein	NA	NA	NA	NA
WP_016945020.1\|649441_649801_+	DUF3325 domain-containing protein	NA	NA	NA	NA
WP_012437244.1\|649990_652804_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_029217124.1\|652886_653600_-	hypothetical protein	NA	NA	NA	NA
WP_012437246.1\|654991_655549_-	VUT family protein	A0A2I7SAW6	Vibrio_phage	4.6e-13	31.8
WP_011038686.1\|655777_656281_-	hypothetical protein	NA	NA	NA	NA
WP_012437247.1\|656277_657138_-	DUF2145 domain-containing protein	NA	NA	NA	NA
WP_011038688.1\|657184_658132_-	mitochondrial fission ELM1 family protein	NA	NA	NA	NA
WP_011038689.1\|658267_658858_+	malonic semialdehyde reductase	NA	NA	NA	NA
WP_012437248.1\|658948_659671_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_011038691.1\|659894_660683_-	siderophore-interacting protein	NA	NA	NA	NA
WP_012437249.1\|660796_661330_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011038693.1\|661527_663174_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA
WP_011038694.1\|663183_663501_+	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA
WP_029217125.1\|663940_664837_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA
WP_012437250.1\|664833_665538_+	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA
WP_011038697.1\|665540_666182_+	malonate decarboxylase holo-[acyl-carrier-protein] synthase	NA	NA	NA	NA
WP_011038698.1\|666505_667345_+	triphosphoribosyl-dephospho-CoA synthase MdcB	NA	NA	NA	NA
WP_012437252.1\|667508_668429_+	malonate decarboxylase subunit epsilon	NA	NA	NA	NA
WP_012437253.1\|668518_669874_+	hypothetical protein	NA	NA	NA	NA
WP_011038701.1\|669953_670673_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011038702.1\|671889_672513_-	HAD family hydrolase	NA	NA	NA	NA
WP_011038703.1\|672605_673025_-	STAS domain-containing protein	NA	NA	NA	NA
WP_011038704.1\|673021_673453_-	ATP-binding protein	NA	NA	NA	NA
WP_012437255.1\|673453_675514_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_029216812.1\|675640_676300_+	hypothetical protein	NA	NA	NA	NA
WP_012437257.1\|676296_677613_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_012437258.1\|678000_679002_+	glycosyl hydrolase 53 family protein	NA	NA	NA	NA
WP_012437259.1\|679378_682066_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_011038710.1\|682290_683985_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_012437260.1\|684240_685449_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_157382676.1\|685493_686571_+\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	4.4e-44	41.9
WP_087942064.1\|686598_687731_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.7e-49	42.8
WP_043890231.1\|687887_688352_+	DUF4411 family protein	NA	NA	NA	NA
WP_012437263.1\|688396_689611_-\|transposase	IS4-like element IS1481A family transposase	A0A0F7LAS3	uncultured_marine_virus	3.5e-50	31.5
WP_087942065.1\|689885_690993_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.9
WP_011038664.1\|690950_691361_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA

DBSCAN-SWA_2

2743332 : 2817405

Leptospira_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942079.1\|2743332_2744131_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012438430.1\|2744361_2745753_-	alginate export family protein	NA	NA	NA	NA
WP_012438431.1\|2745759_2746650_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_011037215.1\|2746949_2747258_-	XapX domain-containing protein	NA	NA	NA	NA
WP_043890335.1\|2748888_2750997_+	CHASE3 domain-containing protein	NA	NA	NA	NA
WP_012438434.1\|2751521_2751890_-	response regulator	NA	NA	NA	NA
WP_012438435.1\|2751964_2753290_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_012438436.1\|2753362_2753647_+	hypothetical protein	NA	NA	NA	NA
WP_012438437.1\|2753693_2754395_-	response regulator transcription factor	NA	NA	NA	NA
WP_016944917.1\|2754382_2756086_-	sensor histidine kinase	NA	NA	NA	NA
WP_012438442.1\|2758129_2758981_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_012438443.1\|2759294_2762255_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_012438445.1\|2763415_2764471_+	DNA-binding protein	NA	NA	NA	NA
WP_012438446.1\|2764794_2765070_+	hypothetical protein	NA	NA	NA	NA
WP_016944913.1\|2765066_2767316_-	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_012438450.1\|2768503_2768728_-	hypothetical protein	NA	NA	NA	NA
WP_129589014.1\|2768724_2769078_-	hypothetical protein	NA	NA	NA	NA
WP_012438451.1\|2769074_2769797_-	hypothetical protein	NA	NA	NA	NA
WP_012438452.1\|2769845_2770496_-	conjugal transfer protein TrbP	A0A077JBM8	Xanthomonas_phage	1.0e-48	49.8
WP_012438453.1\|2770623_2772417_-	hypothetical protein	NA	NA	NA	NA
WP_012438454.1\|2772430_2773030_-	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA
WP_012438455.1\|2773122_2773479_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_012438456.1\|2773475_2773898_+	energy transducer TonB	NA	NA	NA	NA
WP_011037238.1\|2774025_2774844_+	zinc transporter ZupT	NA	NA	NA	NA
WP_012438457.1\|2775224_2776208_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_012438458.1\|2776610_2780195_+	ribonuclease E	NA	NA	NA	NA
WP_011037241.1\|2780760_2781408_-	response regulator	NA	NA	NA	NA
WP_012438460.1\|2781623_2782385_-	sulfurtransferase	NA	NA	NA	NA
WP_012438461.1\|2782418_2782784_-	hypothetical protein	NA	NA	NA	NA
WP_016944902.1\|2782844_2783276_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_012438463.1\|2783287_2784541_+	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_012438464.1\|2784524_2785817_-	nucleotide sugar dehydrogenase	M1HEP0	Acanthocystis_turfacea_Chlorella_virus	2.7e-24	30.1
WP_102650941.1\|2786297_2787400_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	41.4
WP_074038421.1\|2788945_2789593_+	hypothetical protein	NA	NA	NA	NA
WP_012438467.1\|2789683_2791021_+	hypothetical protein	NA	NA	NA	NA
WP_011037256.1\|2791259_2792225_-	hypothetical protein	NA	NA	NA	NA
WP_011037257.1\|2792311_2793493_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_016944204.1\|2793485_2795591_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_087942069.1\|2798040_2799172_+\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_015471948.1\|2799505_2799718_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_012438469.1\|2799764_2800640_+	ParA family protein	NA	NA	NA	NA
WP_012438470.1\|2800623_2800884_+	hypothetical protein	NA	NA	NA	NA
WP_012438471.1\|2800876_2802520_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_011269741.1\|2802535_2803096_+	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_012438472.1\|2803099_2804326_+	hypothetical protein	NA	NA	NA	NA
WP_011269739.1\|2804647_2805403_+	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_012438473.1\|2805399_2805933_+	DUF3158 family protein	NA	NA	NA	NA
WP_012438474.1\|2806006_2806447_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_012438475.1\|2806726_2808739_+	DNA topoisomerase III	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	5.8e-13	23.6
WP_012438478.1\|2810603_2811263_-	hypothetical protein	NA	NA	NA	NA
WP_029217090.1\|2811289_2812468_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012438480.1\|2812529_2813573_-	sulfotransferase	NA	NA	NA	NA
WP_012438481.1\|2813565_2814432_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_087942071.1\|2816260_2817405_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-88	58.8

DBSCAN-SWA_3

3028922 : 3070169

Ralstonia_phage(33.33%)

integrase,transposase

attL 3056795:3056816|attR 3070171:3070192

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012438608.1\|3028922_3030113_+\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	6.3e-92	48.4
WP_029217188.1\|3030285_3030492_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012438610.1\|3030488_3030869_+	hypothetical protein	NA	NA	NA	NA
WP_012438611.1\|3030872_3034397_+	hypothetical protein	Q6R4V1	Vibrio_virus	1.9e-27	25.4
WP_012438612.1\|3034623_3035124_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_029217187.1\|3035961_3036690_+	hypothetical protein	NA	NA	NA	NA
WP_012438615.1\|3036689_3037067_+	hypothetical protein	NA	NA	NA	NA
WP_016945205.1\|3037311_3037791_+	hypothetical protein	NA	NA	NA	NA
WP_012438617.1\|3037787_3038027_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012438618.1\|3038429_3039230_+	NYN domain-containing protein	NA	NA	NA	NA
WP_012438619.1\|3039431_3040112_+	hypothetical protein	NA	NA	NA	NA
WP_012438620.1\|3040286_3040628_+	hypothetical protein	NA	NA	NA	NA
WP_012438621.1\|3040680_3042276_-	MobA/MobL family protein	NA	NA	NA	NA
WP_157382685.1\|3042543_3042717_+	hypothetical protein	NA	NA	NA	NA
WP_012438063.1\|3042769_3043750_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.7e-98	60.7
WP_087942069.1\|3045396_3046529_-\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_012438623.1\|3046579_3046888_+	hypothetical protein	NA	NA	NA	NA
WP_005989438.1\|3046884_3047874_+	caspase family protein	NA	NA	NA	NA
WP_012438624.1\|3048380_3049031_-	hypothetical protein	NA	NA	NA	NA
WP_005997387.1\|3053130_3053790_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_005995347.1\|3054636_3054885_-	hypothetical protein	NA	NA	NA	NA
WP_011035783.1\|3055329_3056697_-\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
3056795:3056816	attL	NA	NA	NA	NA
WP_012438629.1\|3057276_3057591_-	hypothetical protein	NA	NA	NA	NA
WP_012438630.1\|3057645_3058407_-	hypothetical protein	NA	NA	NA	NA
WP_029217050.1\|3058515_3058869_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016945350.1\|3058908_3060249_-	ATP-binding protein	NA	NA	NA	NA
WP_012438633.1\|3060245_3061202_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_012438634.1\|3061416_3062817_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_005997165.1\|3063366_3063963_-	hypothetical protein	NA	NA	NA	NA
WP_029217237.1\|3063962_3064592_-	hypothetical protein	NA	NA	NA	NA
WP_005997167.1\|3065327_3065969_-	hypothetical protein	NA	NA	NA	NA
WP_005997168.1\|3066389_3066614_+	hypothetical protein	NA	NA	NA	NA
WP_005991142.1\|3067013_3067493_+	DNA repair protein RadC	NA	NA	NA	NA
WP_005991140.1\|3067563_3067764_+	hypothetical protein	NA	NA	NA	NA
WP_011035783.1\|3068801_3070169_+\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
3070171:3070192	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3236494 : 3255393

Leptospira_phage(50.0%)

integrase,transposase

attL 3228601:3228617|attR 3262364:3262380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3228601:3228617	attL	NA	NA	NA	NA
WP_011036647.1\|3236494_3237643_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012438743.1\|3237927_3239460_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012438744.1\|3239476_3241360_+	DUF4209 domain-containing protein	NA	NA	NA	NA
WP_012438745.1\|3241417_3242386_+	hypothetical protein	NA	NA	NA	NA
WP_012438746.1\|3242378_3242636_-	hypothetical protein	NA	NA	NA	NA
WP_087942073.1\|3242634_3243766_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-48	42.8
WP_012438749.1\|3245949_3246765_+	hypothetical protein	NA	NA	NA	NA
WP_012438750.1\|3246931_3248518_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_029216811.1\|3248773_3249070_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012438752.1\|3249241_3249553_+	hypothetical protein	NA	NA	NA	NA
WP_012438753.1\|3249592_3249985_+	hypothetical protein	NA	NA	NA	NA
WP_012438754.1\|3250049_3250772_-	hypothetical protein	NA	NA	NA	NA
WP_012438755.1\|3250908_3251133_+	hypothetical protein	NA	NA	NA	NA
WP_087942074.1\|3251439_3252548_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.5e-44	38.7
WP_012438758.1\|3252804_3253131_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_087942063.1\|3253159_3254304_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-88	58.8
WP_012438063.1\|3254412_3255393_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.7e-98	60.7
3262364:3262380	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3763459 : 3803303

Bacillus_phage(25.0%)

protease,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012439024.1\|3763459_3764323_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_011036250.1\|3764322_3765465_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_011036249.1\|3766430_3766817_-	response regulator	W8CYM9	Bacillus_phage	7.4e-10	31.8
WP_012439025.1\|3767133_3768042_-	DnaJ domain-containing protein	F2Y2Y5	Organic_Lake_phycodnavirus	1.4e-06	45.2
WP_011036247.1\|3768184_3768661_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_011036246.1\|3768821_3769304_+	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	4.9e-27	39.5
WP_011036245.1\|3769346_3769907_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_029629024.1\|3770534_3772889_-	penicillin-binding protein 1C	NA	NA	NA	NA
WP_011036243.1\|3773062_3773902_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012439027.1\|3773971_3774919_-	glycerophosphodiester phosphodiesterase family protein	A0A0S2MYI4	Enterococcus_phage	5.8e-08	36.8
WP_012439028.1\|3775022_3778127_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011036240.1\|3778328_3778796_-\|transposase	transposase	NA	NA	NA	NA
WP_011036240.1\|3779168_3779636_+\|transposase	transposase	NA	NA	NA	NA
WP_029217072.1\|3779990_3784907_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_012439032.1\|3785674_3786676_-	nucleoside hydrolase	NA	NA	NA	NA
WP_012439033.1\|3786749_3788966_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012439034.1\|3789220_3790420_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_012439035.1\|3790513_3790831_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_019237897.1\|3790827_3791070_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_012439037.1\|3791156_3793751_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_011036232.1\|3793963_3795118_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_012439038.1\|3795193_3796090_-	methylisocitrate lyase	NA	NA	NA	NA
WP_011036230.1\|3796235_3797837_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
WP_014506900.1\|3797933_3798263_-	hypothetical protein	NA	NA	NA	NA
WP_016944827.1\|3798470_3798677_-	hypothetical protein	NA	NA	NA	NA
WP_139145255.1\|3799153_3799372_+	hypothetical protein	NA	NA	NA	NA
WP_016944826.1\|3799414_3799699_+	hypothetical protein	NA	NA	NA	NA
WP_012439043.1\|3799752_3800040_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_016944825.1\|3800264_3800429_+	hypothetical protein	NA	NA	NA	NA
WP_016944824.1\|3800651_3800888_+	hypothetical protein	NA	NA	NA	NA
WP_012439046.1\|3800880_3801315_+	hypothetical protein	NA	NA	NA	NA
WP_012439047.1\|3801328_3801796_+	hypothetical protein	NA	NA	NA	NA
WP_172973905.1\|3802631_3803303_+\|head	head decoration protein	NA	NA	NA	NA

DBSCAN-SWA_6

4230200 : 4236583

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012439274.1\|4230200_4231547_+	phosphohexose mutase	A0A127AWJ1	Bacillus_phage	3.1e-31	26.6
WP_012439275.1\|4231592_4232996_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.0e-48	30.1
WP_012439276.1\|4233117_4234026_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	3.7e-28	33.6
WP_011035866.1\|4234022_4234580_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-43	49.4
WP_012439277.1\|4234576_4235464_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-95	57.8
WP_012439278.1\|4235527_4236583_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.0e-82	47.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010688

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection