CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_014032	Salinibacter ruber M8, complete genome	2 crisprs	cas3,cas14k,cas14j,c2c9_V-U4,DEDDh,WYL,Cas9_archaeal,RT,csa3	0	0	3
NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	1 crisprs	NA	1	2	0
NC_014157	Salinibacter ruber M8 plasmid pSR84, complete sequence	0 crisprs	RT	0	0	5
NC_014026	Salinibacter ruber M8 plasmid pSR11, complete sequence	0 crisprs	NA	0	0	0
NC_014028	Salinibacter ruber M8 plasmid pSR56, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014032_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014032_1

53478-53579

Unclear

Consensus_repeat	Method
CGCGCGACGAGATCGAGGCGGAGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_014032_1

>merge|NC_014032|1|53478-53579|CRISPRCasFinder
CGCGCGACGAGATCGAGGCGGAGGCGGAGATCGAAGGCGTGCTCTTCCGCTTCGTCGACACCGCCGGCCTGCGCGACACCGCCGACGAGATCGAGGCGGAGG

>NC_014032|1|1|53478-53579|CRISPRCasFinder
CGCGCGACGAGATCGAGGCGGAGG	CGGAGATCGAAGGCGTGCTCTTCCGCTTCGTCGACACCGCCGGCCTGCGCGACA
CCGCCGACGAGATCGAGGCGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014032.1\|WP_013060555.1\|54293_55040_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NC_014032.1\|WP_013060560.1\|60658_61519_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_014032.1\|WP_043551666.1\|47889_49350_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214510
NC_014032.1\|WP_013060559.1\|59942_60590_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NC_014032.1\|WP_148278331.1\|61752_65181_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NC_014032.1\|WP_173387027.1\|46519_47587_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|225191
NC_014032.1\|WP_013060558.1\|57873_59868_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_014032.1\|WP_081580624.1\|50655_52653_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NC_014032.1\|WP_013060544.1\|42266_43703_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NC_014032.1\|WP_043551664.1\|45369_45939_+\|hypothetical-protein	unknown	unknown	unknown
NC_014032.1\|WP_148278329.1\|50069_50510_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234989
NC_014032.1\|WP_043551668.1\|49892_50057_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NC_014032.1\|WP_051010739.1\|65661_66045_+\|hypothetical-protein	unknown	unknown	unknown
NC_014032.1\|WP_148278330.1\|55205_55937_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NC_014032.1\|WP_013060563.1\|66483_66843_+\|HEPN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224807
NC_014032.1\|WP_043551670.1\|66151_66487_+\|hypothetical-protein	unknown	unknown	unknown
NC_014032.1\|WP_013060546.1\|44744_45203_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_014032.1\|WP_043551662.1\|43807_44029_-\|hypothetical-protein	unknown	unknown	unknown
NC_014032.1\|WP_011402845.1\|56883_57363_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_014032.1\|WP_013060548.1\|45979_46231_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014032.1\|WP_013060555.1\|54293_55040_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	6.02078e-44
NC_014032.1\|WP_013060560.1\|60658_61519_+\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	2.98773e-21
NC_014032.1\|WP_043551666.1\|47889_49350_+\|PKD-domain-containing-protein	gnl\|CDD\|214510	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.	3.41711e-15
NC_014032.1\|WP_013060559.1\|59942_60590_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	5.79148e-43
NC_014032.1\|WP_148278331.1\|61752_65181_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_014032.1\|WP_173387027.1\|46519_47587_+\|aminopeptidase	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	7.59152e-99
NC_014032.1\|WP_081580624.1\|50655_52653_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	1.92981e-114
NC_014032.1\|WP_013060544.1\|42266_43703_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.01302e-125
NC_014032.1\|WP_013060558.1\|57873_59868_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_014032.1\|WP_148278329.1\|50069_50510_+\|ribonuclease-P-protein-component	gnl\|CDD\|234989	PRK01903, rnpA, ribonuclease P protein component.	6.21278e-06
NC_014032.1\|WP_043551668.1\|49892_50057_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	9.38584e-13
NC_014032.1\|WP_148278330.1\|55205_55937_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	1.94313e-06
NC_014032.1\|WP_013060563.1\|66483_66843_+\|HEPN-domain-containing-protein	gnl\|CDD\|224807	COG1895, COG1895, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown].	1.46886e-19
NC_014032.1\|WP_013060546.1\|44744_45203_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.24726e-11
NC_014032.1\|WP_011402845.1\|56883_57363_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	0.00195029

>NC_014032.1|WP_081580624.1|50655_52653_+|membrane-protein-insertase-YidC
MRTHSPTRPCPLASPLRNNPEPEDQRNVIIATILVAVIMFAWIFWFSPSPQQQQSQQAAGPADTTEQTDPSAPAADTGADDAPSDAAPPSTADAGADASQPDADQPEAPAPDSVTAAALQGTQRRIVVESDLYTVVLSTKGGTIERFTLKEYKQFNQEDPVQIVDTTAGGTLSLSFTTPSRRRVDTRSLYFSADTKADTVRIEDESKTLTFEAQLGDGALRQSYTFHPDDYDLGLAIEQERPRSFLTSDGYELTWHGGMPYSEGGEEDELRYTGLFARNGEQIQSLTLSDADQNQKRIEGDVSWMAVKNKYFTAAVMPDRPATALGASLTGRKEGRATSEAAFKDLTGRLQMPLPRETTHVDKFHLYAGPIDYYSLADYGRNLYGMVNYGWDWFEWMTKPLAEYLYIPMLTYLGTGLPSWLFGGGLPYGVIVILMAVLIKTVVYPLTKSSYRSMAQMRELQPKMQEIKDKYDDEPEKQQEEMMQLYRETGVNPLGGCLPMFLQYPILISLYQFIPKSIQLRQESFLWAADLSAPDKILQLPFEIPFYGDYVAGFTLLMGLAMIVTMRVQSTGGGAAGGQAKIFMYAMPGVIFFIFNRFASGLSLYYLFYNIVTAAQQKWINMQLEKEKDDDGNLTNGRSDGEAEGEKGFFARLMERAEEAQKEQR
>NC_014032.1|WP_148278329.1|50069_50510_+|ribonuclease-P-protein-component
MSDVPDRVEQRRLTFPPSYRLKRRRLIRSLFDRTRDDVRTVAEGCVRLLYRVVDRAVLGHDVPLQVGFAPGPRAESGVERNRIRRLLREVYRVHQYTLVDPFVCGPEALIVMILFRGAPEQADDGIGRDLPPALRRAAASFDERAD
>NC_014032.1|WP_043551668.1|49892_50057_+|50S-ribosomal-protein-L34
MPKRTYQPSQKKRKKKHGFLERMKTKEGRKIIKRRRKKGRDKLSVSDEDSGKPV
>NC_014032.1|WP_043551666.1|47889_49350_+|PKD-domain-containing-protein
MHLCSLNVPRSRGGRLVLLGVALLLSGVVGTAQAQHLDNGFYGKLGAGLSGYTGDLAGPRAGAPQEFGADAIGRLPLVAVGELGYQLSPRWGLALGGQAGSYVSVGNAAPATDSYRRYTSHLLGRYTFGAPDRRVAFYLDAGLNVTAGGPTHTGIGPSVGGGIDIRAGRAVSLYVESRLHATVPDDAVDGRGRGAEGWSFDTVNQPLGFGLRFSLTTPTAPEIIALDAPTEVEAGTTATFTVTINEEEAARPLDRRWRFGDGTEGTGRTVTHTYRRPGTYPVTVSAHNEAGEATASTTIRVTRASAPPSPPEVPWVVSLTARPNPVRVGEPVQLRTAVEGEKPFTYQWTVDGTTATRGSAPTYTFDRPGRHTVQVRVSNDGGTETRSMTVQAERRTAKRPSPQPAGLWAVGVASMRNPAGAKRMARRYRTRLADAPVSVRIVEHMLDQERHFRVVVGRYETRAAAQKARETYRRALPPEAWAVRLE
>NC_014032.1|WP_173387027.1|46519_47587_+|aminopeptidase
MDERIQEHARTLLNWSTDVQRDDDVVIAAGPEAHDLVVALHRELGDRGANPMTLYSSGEASRAHLKAHDGDFSLPEHTLALYEACDVAIHVRSSPNLAALNDVSGTRLAERSRAHKPIIEERLSKRWCLTQHPTNAHAQAADLPLGAYRDFVYGAILRDWAAVEEYQEELRRRLEAARTVRVVAGETDIEMSVEHMHAINSAGRHNMPSGEVFTAPVPESVEGTVHFDKPLIHQGREMEGVRLRFEGGEVVESAAERNEEALDDLLDTDDGARRLGELGIGTNREIDRFTKNMLFDEKMGETVHLALGRAYDANVGEGQTGNDSAVHVDMILDTSAGRIEFDGEVIQEGGQFVWE
>NC_014032.1|WP_013060548.1|45979_46231_-|hypothetical-protein
MRAPFSPLSFFSPRSVHNVAYRLALLISVGGLVLLAMAGPGDDLQTTLGATGLVGAGLLVGLGALLRFLGYIEEGAADRDGSP
>NC_014032.1|WP_043551664.1|45369_45939_+|hypothetical-protein
MGEHAPPRSLQQLRAEWRERLQSARDRAASQVDDMGLADLRALRATIGEEMERVEDRLPDPGPVETKGPMTAEQQAEHVQAALQYHALQVRKQLVAHELRRRALGPAAVEQEIEVPPTTRHYATLAWDVMGETDAETTADVYREVARRAEEDVHLTTVEMWLREKNPHHPEETDGRWTELRRAVLLASA
>NC_014032.1|WP_013060546.1|44744_45203_-|DoxX-family-protein
MLRSLEAQRDLVLDALRVYLGTGLFFRGLALLMTDGGLQQLLGATEPGLGLTGLSVYVIAAHLVGGAFLAVGLYTRLAALVQVPVLVGAVFLVHWRDGLLSADQSLEFSALVMFLLLLVCTFGSGRWSLDAKWRRPPAPIVPGSPRRPAPQN
>NC_014032.1|WP_043551662.1|43807_44029_-|hypothetical-protein
MPDQSLTPGQALGRWILHVVVFLLSGGVAAGASALAYQAIAQTQTPLGIYAVIFAAGGFIAYRQTERVLATEA
>NC_014032.1|WP_013060544.1|42266_43703_+|DEAD/DEAH-box-helicase
MAADISQSKYTNVIDLTSEAQQERRRDEVGSELREPDPPLDEVTVDALSGHMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSEARELLQERYANAEAPANGEEPGVEDFVPLVKELSDEQPELLASLITELYAEAKTEDEEEK
>NC_014032.1|WP_013060555.1|54293_55040_+|acyl-ACP-thioesterase
MTAGIWTDEVRVRSYDVTPQGTASVLTLADYFQEAAGRHAAELGVSMTDLRADGQAWVLAFMHMQVERLPHQNESIRIETWPSGLESASAHREFVFHDEEGTVLAGGTSRWFVFDVDRRRPVRPPRVLADIEGPDRPGPIDQDLDALSAPAHTDREQTFTARYHDLDLNRHVNNVRYLEWALETLPAAVLDERRCLGFAVQFEAETRLGDPVRASAEQIEDGGTLRVRHRLAHAESDQTLALVRTTWL
>NC_014032.1|WP_148278330.1|55205_55937_+|zinc-ribbon-domain-containing-protein
MKRCRRRTQVGIRINLCVQGREGLSSPTPTGPIVTSTQPDSRASSLTDDALQWTRLEVAFTAGIVGCLLFATWQLGDLLARDWLAGWVGESELREDLVYYGVAFTAALAALGGTTRSLAHAGRFRRTVGRSLLWYGALLLISASGMGAIEYLPEVAAGLFGAGVLIAAVYVLQQRYFTRERIRRRRLRNDNCPQCGSDLRPEAHHCSQCGRRVGKDCPECGGYLGRSDRYCADCGRERAEGAP
>NC_014032.1|WP_011402845.1|56883_57363_+|helix-turn-helix-domain-containing-protein
MPTDPLRRLGRLEEGGFRRLAARLALLRAYARRRDTEGLSDAQAQAAIAEAFDQRTAAVDAWVYDVYESVTARTLRRWAQQFREEGLQGLIDKHGRRSERSYESYFGAGSELRKVALHYLADHPDCTSTELLDELAQHVDDDALPTRRTVQRFLRKMGG
>NC_014032.1|WP_013060558.1|57873_59868_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MHQDYFEHDVIVVGGGHSGSEAAAAAANMGADTLLITMKLADIGQMSCNPAIGGIGKGHIAREIDALGGIMGRATDRAGIQFRMLNKSKGPAVWGPRAQCGRRAYARAIRQELEAIDNLKMRSDMVKEILTDDAGETVTGVRTNLGKEFCAPCVILTTGTFSNGVIHVGEQNFGGGRIGESASHGITGCLHDLGFESGRLKTGTPPRVDGRSIDYSVMEKQPGDPDATAFSFLTDDLPSVEAQLSCWLTDTTPETHEVLRTGFDRSPMFTGALDADGPRYCPSIEDKIDRFSEKDHHQLFIEPEGRDTHEVYVNGFSSSLPEEVQFEALRTVPGMEEAHMHRPGYAIEYDFFPPYQIEYSLETKYVDGLFFAGQINGTTGYEEAAAQGIMAGINAVQKLRQADPIVLKRSEAYIGVLIDDLVAKGTDEPYRMFTSRAEHRILLRQDNADQRLTELGHKLGLASKERLDRTREKERAIDVTRETLSDTTVSPQQVDDYLQSVGTSTLNQPRPVIELCKRPEVDSEDLLRHAGIYDEVVTEAPGMLSAPRLIEIDLKYEGYIDRQKDMVEEMEEKERWPIPDDFDYHALDNISIEARQKLSKVEPDNLGQASRVPGVRASDISVLMVLLKNEGVEPMPKDRDLNLDAMGGDGQSFGVSRETAVEVG
>NC_014032.1|WP_013060559.1|59942_60590_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MENLAWSPFKSLTAEQREQLDRFREQLLRFNQRVNLISPETEGAFRTRHLLHCLTLTARDFPAGCTVVDWGTGGGLPAIPLAICHPEATVVGVDSVGKKSRAVRTIARRLGLDNCFTWNGRADEWTGEAHYSVSRATAPLADLWAWHRRVAVSPDDPNGDAWPPGLLALKGGDLSDEVAALHAADPDAGVERHSLHDLLGRNGFFGAKEIVAVRS
>NC_014032.1|WP_013060560.1|60658_61519_+|alpha/beta-hydrolase
MRRAMINTALGLAVGYAAIAGLAFAFQDQLLFQPSDRHRATPEDAGMPYETVHLNTEDGETLHGWWIPAPDVSRETSPGASAKQTLLFFHGNAGNISGRLESVEQFRRLGLNVLIVDYRGYGQSTGTPSEAGLYRDAAACWRHLTETRGLAPQNIVVFGRSMGGGPATWIASRNRPGAVILESVFTSVPDVGAHHYPFLPVQTLATNQFDNASRVGAISAPLLSIHSRDDRIVPFELGRKVYEAAAAPKQFLEIEGGHNDGFLVSAEEYLRTIGDFLEEHLGSGDE
>NC_014032.1|WP_148278331.1|61752_65181_-|transcription-repair-coupling-factor
MSLTAIANRIETTAAVSRLRAWTAEAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEPDEAILRVPATQKTPYDPDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQAVQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTYPIRIDFFGDEVNGLREFDPQTQRSVSRLTTARLVPNLEREEAARGSIALFQYLPDEAVLATLDEAQVREGAQAQFEEAAAAYEERRAELAENDEVEQTPEDLTPPDDRFLTGDQMAAALTRHPRLQFGTFSQSSTNGTPTDTLDLEADPQPSFSSDMDLVRKRLQKNGDRDLDTFILCDSHGQSSRLRDLLESEIDHGWARLVVESLHQGFEWPGAGLAVFTDHQIFNRYHRPSTKQREGHADGMNLRDIKNLTRGDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVHALHKLNKYTGKEGHQPTLTKLGSEQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYAFSSDTTWQREMEASFEFEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQPINTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRDLDIRGAGSLLGAEQSGFIEDVGYETYHKILDQAVKELREEEFDDVFDGEAVPPGPETSVDVEEDAYIPESYLRDNTERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLLTGARLRLLGERLRMPKVVYKNERLFLYLPSEDADPYFYDEVFHPLLEKLTLLDREYVMKDDVEGGLMRAIVQDVNTLDEALQVTESLLLEETKTMATVEA
>NC_014032.1|WP_051010739.1|65661_66045_+|hypothetical-protein
MVTDPRKAYDRWLGHVEAPLVLEHVEALGPVFRGTRRVLRDGGPFYLAELHPTRQFGGTQAHFEDEATGETVVIDACAHPVSEFVSAGVEAGFAVRGMGEWRADGDEQPRLLSIRFGAGLDVADLQQ
>NC_014032.1|WP_043551670.1|66151_66487_+|hypothetical-protein
MQVTRTPADVLATLSRRYREHYGDRLVGIYAVPEFPFSDEGPEETEDDDVRAIEILVILQGPYDHFEEADPVVDIAMDVTEEYDWWMGIFARHAAHDDDLADWAREKGVEL
>NC_014032.1|WP_013060563.1|66483_66843_+|HEPN-domain-containing-protein
MSEVQERLQTARRRLDAAQCLHRNEFESDAINRLYFGVLESARALLLLRDLTPKTHKGTGMKLGQHFQNDVEVGLLTKLRQNREEADYDLWNPSSDEVEMWLGRADEFVDASAHIVGRE

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Crispr_ID: NC_014032_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014032_2

2105714-2105808

Orphan

Consensus_repeat	Method
AACGCAACGACGAGCTGCGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014032_2

>merge|NC_014032|2|2105714-2105808|CRISPRCasFinder
AACGCAACGACGAGCTGCGGCGCGAAAACATTCAGCTCTCCAGCCAGGTCGCCCGCACCCGCGACGTGCGCCAGCGCAACGACGAGCTGCGGCGC

>NC_014032|2|2|2105714-2105808|CRISPRCasFinder
AACGCAACGACGAGCTGCGGCGC	GAAAACATTCAGCTCTCCAGCCAGGTCGCCCGCACCCGCGACGTGCGCC
AGCGCAACGACGAGCTGCGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014032.1\|WP_148278516.1\|2098556_2101271_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_014032.1\|WP_051010815.1\|2093332_2094646_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_014032.1\|WP_013062118.1\|2107248_2108358_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NC_014032.1\|WP_043552368.1\|2102043_2102697_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NC_014032.1\|WP_173387068.1\|2114353_2115070_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133009
NC_014032.1\|WP_013062115.1\|2102716_2104303_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_014032.1\|WP_051010816.1\|2094768_2097549_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_014032.1\|WP_013062106.1\|2091247_2091919_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NC_014032.1\|WP_043553268.1\|2111239_2111785_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_014032.1\|WP_011404386.1\|2104469_2105477_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_014032.1\|WP_011404396.1\|2113851_2114325_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NC_014032.1\|WP_013062119.1\|2108417_2109863_+\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NC_014032.1\|WP_013062111.1\|2097808_2098486_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319809
NC_014032.1\|WP_043552371.1\|2110285_2111188_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NC_014032.1\|WP_011404394.1\|2111867_2112926_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_014032.1\|WP_013062120.1\|2109884_2110250_+\|hypothetical-protein	unknown	unknown	unknown
NC_014032.1\|WP_043553261.1\|2091930_2093112_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_014032.1\|WP_013062105.1\|2090616_2091204_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NC_014032.1\|WP_013062117.1\|2106578_2107142_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_014032.1\|WP_051010934.1\|2113153_2113780_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659

Protein	Function_ID	Function_description	E-value
NC_014032.1\|WP_148278516.1\|2098556_2101271_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.605e-52
NC_014032.1\|WP_051010815.1\|2093332_2094646_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.23898e-84
NC_014032.1\|WP_013062118.1\|2107248_2108358_+\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.74084e-15
NC_014032.1\|WP_043552368.1\|2102043_2102697_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	9.19468e-94
NC_014032.1\|WP_173387068.1\|2114353_2115070_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	8.37551e-81
NC_014032.1\|WP_013062115.1\|2102716_2104303_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_014032.1\|WP_051010816.1\|2094768_2097549_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_014032.1\|WP_013062106.1\|2091247_2091919_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	1.09842e-24
NC_014032.1\|WP_043553268.1\|2111239_2111785_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	1.29425e-74
NC_014032.1\|WP_011404386.1\|2104469_2105477_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_014032.1\|WP_011404396.1\|2113851_2114325_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	1.73848e-97
NC_014032.1\|WP_013062119.1\|2108417_2109863_+\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_014032.1\|WP_013062111.1\|2097808_2098486_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319809	cd07506, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.6534e-49
NC_014032.1\|WP_043552371.1\|2110285_2111188_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.20497e-19
NC_014032.1\|WP_011404394.1\|2111867_2112926_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.94514e-38
NC_014032.1\|WP_043553261.1\|2091930_2093112_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.04786e-50
NC_014032.1\|WP_013062105.1\|2090616_2091204_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	1.08072e-46
NC_014032.1\|WP_013062117.1\|2106578_2107142_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.20298e-110
NC_014032.1\|WP_051010934.1\|2113153_2113780_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.48585e-37

>NC_014032.1|WP_011404386.1|2104469_2105477_+|rod-shape-determining-protein
MFFNLSQDVAIDLGTANTLVYIRGEGIVLNEPSIVVVDSDTNEVREIGHEALQMHERTHQDIETIWPLRDGVIADFKVAEEMIQGLLRKVKNNWLTSIRSMVVCVPSGITEVEKRAVRDSAEHAGARKVNLVSEPMAAAIGIGLDIQEAVGNMVVDIGGGTTEIAVIALSGIVLDESLRVGGAELDKAIVQYFKRNHNLLIGSRTAERIKCEVGSAIELDTELDLSVKGRDLVSGIPKVRTISSVNVREALHDNLEQISAAVLRTLERTPPELGADVLERGIMMTGGGALLEGIDQMLRDRVELPVYVAEDPLKAVVRGTGEVLENLENYERVLT
>NC_014032.1|WP_013062115.1|2102716_2104303_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MPPDAPSPVRRALLSVYDKTGIADFARRLRSLDVELISTGGTADTLRDAGIDVTDVADVTGVPEVLEGRVKTLHPALHAGILARRSREDDLAALDEHDYAPIDLVVGNLYPFSEAVQDPDADPETVMEYVDIGGPTMLRAAAKNHFDVGVVSAPDQYAAVADELEQNDGHLSAPTRRRLAEAAFAHTAAYDQDIDAHLSRASGADADGDGDLQPTYNVALPQAQSLRYGENPHQEGALYGDPSPFYDKLHGRALSYNNLLDTSSALALIDEFRDAGPTCAILKHTNPSGVATADTLEEAWHQAFATDTQSPYGGIVVVNQALDRATAEAIDEIFTEIVIAPEFEPGVLEFLTEQDRRRVVRAKQPARGTDRLDVRSVLGGLLVQTRDPALPPAATARDGWEVPTARAPSDDERADLDFAWRVAKHVKSNAIVYARDQATLGVGAGQMSRIDASELAVFKAEKSELDLTGSVVASDAFFPFADGLEAAANEGARAAIQPGGSIRDDDVIEAADAHDVAMILTGQRHFRH
>NC_014032.1|WP_043552368.1|2102043_2102697_+|phosphoribosylglycinamide-formyltransferase
MRLAVFASGEGTNFQAILDAVGGDRLPAEVACCISNTKDAGALNRADQHDVPTEVIPPASFESPEAFGHALLDGLAAHDVTFVALAGYMQKIPPNVVDAYRGSMTNIHPALLPAFGGQGMYGMHVHRAVIDYGVHWTGATVHLVDEEYDHGPIVLQEPVPVYADDTPEALADRVREVEHRLYPEALRLFAAGRVHQDDRCIRIDAPDHPRRSPTDSE
>NC_014032.1|WP_148278516.1|2098556_2101271_-|PAS-domain-containing-protein
MSLLGALLITSLNILYRLSGLESASPMWAYLGLSGLFGGLFLLSYVSRWVRRHYVPLMWGIMYLQMIWIVAVATANEFRSEYGLALLLIYASIGVVIELGAQSFRPVLWFLGFGGLVTAGGLFLTPAPKLQPPVVLAIMVVVGLTVSVSLRGRMTIRRQRDLLDRLVETSPGAIVRLDQEGTFVQANGRVAEVLKSSEDDICGRTYAELEWTLTPFGADTMPEEAVPFDHVLETGASVRDVELSVQWPDGTQRVLSVSGAPLQAEGKGPGAVFHLRDITDRVRREQTLRRVKERYQTLVDNFPDGGVFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDGEKHVYEQEYQGQHYRVQTLPIRGKAGDVISGLAVSQDITERKERERRLRQSETLFQNAQDALFLLDVKEEEEAWAFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMMEKCRRCVQHREARLYEETISLEGRETYWKTRIAPVLVEGRVRQIVGITRDVTEQHRRQEALERQNDLFDRAQEIASVGAWEYDARADASNWTKKAYEILGYPPDADPNPSTAVGYYHPEDQPRVQKALRDALQEGKPSDLEVRVAAGDEVRWARIRGEPQWEDGEVVRIRGTIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKELDLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEELRPRAEEKEVSLQLETEAAWAEADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVETEKGEGTRITVWLPRAHDDE
>NC_014032.1|WP_013062111.1|2097808_2098486_+|HAD-hydrolase-like-protein
MRLLLFDIDGTLVRVNGRGREAVNAALSSLMDRPISADGVTFSGRTDPAIVEAVLAHNDLPATDALIEDVIATYVETMRDVLTPADVEVLPGVSDLLARLDAHPEIHLGLVTGNVEPIAYEKLSAHGLDEYFPVGAFGSDHAERNRLPELATRRAADHTGRAFRPHEHAVVVGDTAHDIECARAVGAQAVAVCTGRYGRDDLSQHDPDLLFDSLGDPSAFVQQAL
>NC_014032.1|WP_051010816.1|2094768_2097549_-|DNA-polymerase-I
MSPPDAAPDDNALYLIDAMSLAYRAHYIFISRPLINSKGQNTSAAYGFTNSLLKLIEDHDIEHAAVVFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADDVIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIYKPAKGDQDFEIKTRDTFRDEYGLDPAQFVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREGMQEHAEEARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRLGIEGGEGSEEETDEDDPDLQFDFGPYEKVQELDPEAVDYEVVRTEEELHAFADRLGEEARYAFDAEATSRDPMTADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGPVLARDTEKLGHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLVAPEENHNLDDVARSVLNYKMVPIADLIGDETDRDSMREVDVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQYRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDAAQTMIDDEMRDALPLDDVPVTVDMDTGDNWLEAH
>NC_014032.1|WP_051010815.1|2093332_2094646_-|insulinase-family-protein
MTETVPAPPRDLPAAVDFQEASDGIECYRLVDNDLRILLLPQDGAPVATSMVTYHVGSRNERTGHTGATHMLEHLMFKGTERYHKRKGTSIFETLQSVGAKVNASTWLDRTNYYEMLPTEHLPLALDIEADRMRGALIDAEDVEDERTVILNERDRNQNDPVSRLFDEVWGAAFVAHPYHHPTIGWKSDIERITPDGLREYYDTFYWPNNATLSIVGRFDRGETLAEVAEHFGDIGPAPRDIPQVTTEEPEQSGPRRVTVRQDGQLGAVLMGFKSPPALEADSDVLDVLARILASGKGSRLFQRCTDQGLTSDVFGINFRLRDPGLFSVFAYLAPDQDHQTVEDAIHETIADVQENGVTQEELDRARSQLRAQIAFDRDGPMRVASQLNESLAAGDWKLYTQYLDRLDDVTAEDVQRVAQTYLTRDGVTIGRYVPTS
>NC_014032.1|WP_043553261.1|2091930_2093112_-|insulinase-family-protein
MTNPDLAAGDALRQQLTVSLLDKGTEHRDRFALARVLEACGAKLDLSSDGLFVEMSGRALVDDLPRVLEVAAEMLRAPAFDPEEFRKARAQVAADLQRRMEKTSAQASTALSQRLFPEGHPNYSPAPETVLEWLQGLTVQDVRDYHEAHFGANEWTLAVVGDLQHDAVASVVDETFAGWAPHDAPATHDTDAVSTEVGRTTVPMPDKSNVDVRLGHAVPIRRDHDDYPAFYVGNYILGGNFAARLMSTVRDEMGLTYSIRSSLSGVSTRYVGSWQTSVTLSHDAVDEGIAATTDVIREFVAEGATAEELDAKKTTITGSYSVGLATTDRLAQSILTNAERGFDVAYLDDFPEEIRALTLDEVNAAIQDYLDPASMQEALAGTRPRPAEATAGA
>NC_014032.1|WP_013062106.1|2091247_2091919_+|PspC-domain-containing-protein
MSSPRSRSQRSSETTDESFEQPSAFEVGETTLDLDDISEEELDTLYFSDDTDTSGLFNLPTVTGLTLILAGTIYLLSELGAWTGLAFSGLILPWLVGVGVILLGFGLLTWRSSGKDDPESTTTKKAVEAETGQTKVVEEPKKSDNKQLTRSRTDKKLFGVCGGIAEYLNLDPTLVRIAFVVGVIGSGGPFVLGYFALAFIMPKEPPLTPEERLSIIRDEVDES
>NC_014032.1|WP_013062105.1|2090616_2091204_+|5-formyltetrahydrofolate-cyclo-ligase
MGPMGSQAKTSWRRRFRSYRRSLSARSCRARSSLIVHRALGAPPVAPAQVVHVYWPITAQREVDTRPLIALLRARDVEVVLPVVTSFEAETPTLEHRRYDGPGSLTANRWDIREPKHTERVPPGAIDVVFVPALGVGQDGHRIGHGSGYYDAFLQSVACPRVALTYEACLVPSLPNASHDVPVTTIVTEQQVLAP
>NC_014032.1|WP_013062117.1|2106578_2107142_+|ATP-dependent-protease-subunit-HslV
MTADTDSPHATTVLGVRHNGQIALGSDGQATMNETVVKHKAEKVRSLYDGDILAGFAGSTADAFTLFERFEEKLQEYGGNVARAAVELAKEWRTDKYLRRLEALLAVASPGELLLISGAGDVIEPDDDIIAIGSGGSFALAASRALLQNAQGLTARDIVENGLSIAADICIYTNHNRTIRDIEAESD
>NC_014032.1|WP_013062118.1|2107248_2108358_+|NYN-domain-containing-protein
MSYDAPTDGVPPRQAAMFVDYDNLYSILKSQSGRDRSTSAYAEEIFEEVRRYLEEGDDTPTIYGRAYGTFDTLLDENDAPVPSALHREGINPIHVPAGMQDNTSEVRLTLDVTQALTRRSDLQTVVIITGNRPYLPLVRWIREQGCRPLVAAVNPPQTADTPSFAEDSRYLDARNLLSEESREDLLANAPTSGSAYTRAQSPDAPPPQQFQSLDNPGARRAIKITEEHFGQYDEVYLTPLLRKLSDLMGPDEDPKSLVSELEAAGAARLEKRNGYPYNYTVLIVNDEHPDVQDLHETLGRSSSTTDASSGGDAGSESPDSSPDSGRNDDEKRSADAHDMDGAVPSPTASASTVTSETGGETSPRTDAEE
>NC_014032.1|WP_013062119.1|2108417_2109863_+|ATP-dependent-protease-ATPase-subunit-HslU
MPDVTQHVEDLTPRQIVDELDKYIIGQEDAKKNVAIALRNRWRRQNAPKDMRDEIVPNNIIMIGPTGVGKTEIARRLARLARAPFIKVEASKFTEVGYVGRDVDSMIRDLTDIAVNMVEKEHREEVQDRARELAEERILDILIPPDDDTQSRAGDGASDEPGVTVSDTDDAEAEGEQTSLRARTREKFRDKLERGDLDDREIEIEVTSDSQSMMQMFGPMGMEEMGVNLEELFGNLGGGQKRKTRRVTVEEAREILTQEEAQKLIDMDQVKEDALERVQQAGIVFVDEIDKVASGTRTRDEGGQGAGVSRQGVQRDLLPIVEGSTVTTKHGMVETDHILFVASGAFHASKPSDLIPELQGRFPIRVELNNLDEDDFYEILTKPKNALVKQYRALFRSEDVTIEFEKEGVSELARIAAEVNADVENIGARRLHTVLTTLLEDLLFDVPEEIPPGSKITIDADMVRDRLSSIASSRDLSQYIL
>NC_014032.1|WP_013062120.1|2109884_2110250_+|hypothetical-protein
MSNPDHSALRLHPASGALILGLDWLLFSENAVTLGLSTPFVAIIGLVVAGLGTGIVQRRYGADGMGVAVLKGLLAGITVGIPLPVAGTAVGGGILALSGLNTGWRSPSEEPPPSSSRDGDS
>NC_014032.1|WP_043552371.1|2110285_2111188_-|alpha/beta-fold-hydrolase
MPFAAPLPVLPHHVLQFMRTTVLLLALSVVLAGCSTITIDEETVFQPKPSVTPETFSVDDVDLSVRNIPVADSASVNGWHLTQADAETTVLFFGGNGFYLVQSKGYLRALTRPPVNAFLWDYRGYGRSDGAPSAANVRDDALAVYDSLVARPGVSPDELLVWGHSLGSFLATHVASERTVGGVVLENPATNVNDWKSYLFPWYVRLFLGVEVDPALQQDDNLERVRSLEVPLLVVGGSEDQVTNPAMARRLHAEAASENRRLVIVDGGGHNDLYEDREVRAAYRALIDEITTEAPAQSSR
>NC_014032.1|WP_043553268.1|2111239_2111785_-|gamma-carbonic-anhydrase-family-protein
MIKPFLGVEPTHDDTNYIAETAALVGDVILGRDASIWHHCTLRGDVNWIRVGPETNVQDHTVVHVTHGTAPADIGARVTIGHGAIVHGCTVEDEVLVGMGATILDHAVIGRHSIVGAQALVTKGTRVPPRSLVLGQPAEVVRTVTDEEVAGIRDGADNYLRYGDVHAGTERPAENPWYDPV
>NC_014032.1|WP_011404394.1|2111867_2112926_+|AI-2E-family-transporter
MAASSPDSYISRRPYVTMGLTVAGVLVLVVATQLVEVLFTVFAGILLAVFLAGVTQELTEDTRLPRPLAVALTLIGLGGVLVGLWALAGPDISEQASALATLLPDAAERLASRIRTTVQRYGWMQRYVDPSQLLPPVSSVLGRVTNVFRDTLNLLVNGFIILFIGIYGGAAPQSYLDGVVQLVPPSSRPRARDVLSALGRALRWWLTGRLILMLIVGVLTAVGLKVVGIPSPIALGLLAALFSFVPYLGPVLSVLPALLVASLIGPTEVLYVILVYGAVQLLESYLISPLVQQQAVHIPPATVITAQFIGGVSAGAGGVLLATPFAIVVIVLVQTLYVEDVLGDEVSLLGEH
>NC_014032.1|WP_051010934.1|2113153_2113780_-|DedA-family-protein
MEALSPIWAYVTLLVIAYGENVLPPIPGDMVVVFGGYMAGLGQLHLGVVILLSTVGGALGFMTMYAVGYKLGRSVLNPDRLQWLPREGFDRAQRWIHQYGYGVIAANRFLSGARSVISLTAGMFRMETARTAWWCTVSALVWTGLISYAGYAVGENWDLVVTYLRAYGRIVLTILVLGAVGLGARWYWRRQRRTATGGDDGGPPSEPR
>NC_014032.1|WP_011404396.1|2113851_2114325_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGFGYDVHRLVEGRPLILGGVQVPHDRGLAGHSDADVLLHAVADALLGAAALGDLGAHFPDTDAKWKDADSQALLRRVVERVQHAGYAPHNVDATVLLERPKLRPHVDEMRTNIARALSFPRDAVSVKATTTEGIGFVGREEGVAAQAACTIQSA
>NC_014032.1|WP_173387068.1|2114353_2115070_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAVLIPAAGRGRRLGGRPKQFRALGEHPVLVQVLLSFERHPAVGHAVVAAPEFRVPDVTDRLQAEGLSVLTAVVGGGADRQSSVQHALRAVPDPVNTVLVHDAARPFVAAAQVQAVVQAVRTGGAASLVVPVADTLRRGDADRLGETVSRDGLYRMQTPQGFRREWLEHAHRRASAEDLAATDDVALVQQLDHDVVPVPGSRRNFKITTPDDWALAQALWPTWRDAPERFDLSSSASS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

219813 : 289804

uncultured_Caudovirales_phage(14.29%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013060664.1\|219813_220734_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_118827548.1\|221861_222266_+	hypothetical protein	NA	NA	NA	NA
WP_013060666.1\|222295_223258_-	homocysteine S-methyltransferase family protein	NA	NA	NA	NA
WP_148278336.1\|223482_223824_-	hypothetical protein	NA	NA	NA	NA
WP_013060667.1\|224068_225697_-	hypothetical protein	NA	NA	NA	NA
WP_043551715.1\|225727_226411_+	hypothetical protein	NA	NA	NA	NA
WP_043551716.1\|227205_227844_+	hypothetical protein	NA	NA	NA	NA
WP_148278337.1\|228032_228284_-	hypothetical protein	NA	NA	NA	NA
WP_013060672.1\|228988_229819_-	hypothetical protein	NA	NA	NA	NA
WP_013060674.1\|230508_231087_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_013060675.1\|231209_231848_-	hypothetical protein	NA	NA	NA	NA
WP_043551723.1\|232359_233904_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_118827549.1\|234228_235806_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.9e-05	74.4
WP_013060680.1\|236292_236610_+	hypothetical protein	NA	NA	NA	NA
WP_013060681.1\|236674_237289_-	hypothetical protein	NA	NA	NA	NA
WP_158442652.1\|237408_237561_-	hypothetical protein	NA	NA	NA	NA
WP_013060682.1\|237779_238166_-	hypothetical protein	NA	NA	NA	NA
WP_043551727.1\|239447_240056_-	hypothetical protein	NA	NA	NA	NA
WP_043551729.1\|240442_240925_-	PKD domain-containing protein	NA	NA	NA	NA
WP_158442653.1\|241090_241930_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_043551731.1\|242108_243116_-	DUF4249 domain-containing protein	NA	NA	NA	NA
WP_051010908.1\|243150_245421_-	TonB-dependent receptor	NA	NA	NA	NA
WP_013060688.1\|245920_246952_-	hypothetical protein	NA	NA	NA	NA
WP_158442654.1\|247777_249556_+	PAS domain-containing protein	B5LWN8	Feldmannia_species_virus	1.3e-05	23.2
WP_013060690.1\|249569_250220_-	hypothetical protein	NA	NA	NA	NA
WP_013060693.1\|251166_251304_+	hypothetical protein	NA	NA	NA	NA
WP_013060694.1\|251538_252435_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-22	33.8
WP_051010910.1\|252602_256328_+	ABC transporter permease	NA	NA	NA	NA
WP_043551737.1\|256918_257959_-\|transposase	transposase	NA	NA	NA	NA
WP_148278338.1\|260568_260844_+	hypothetical protein	NA	NA	NA	NA
WP_158442655.1\|261362_261650_+	PqqD family peptide modification chaperone	NA	NA	NA	NA
WP_148278339.1\|261658_262606_+	hypothetical protein	NA	NA	NA	NA
WP_013060704.1\|262602_264672_+	lasso peptide isopeptide bond-forming cyclase	E5EQ62	Micromonas_sp._RCC1109_virus	1.5e-08	30.4
WP_158442656.1\|264931_265036_+\|transposase	transposase	NA	NA	NA	NA
WP_013060705.1\|265684_266023_+\|transposase	transposase	NA	NA	NA	NA
WP_013060706.1\|266126_266660_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013060707.1\|266628_266895_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_013060708.1\|266978_268442_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_013060710.1\|269843_270233_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.7e-19	38.7
WP_118825850.1\|270229_270697_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_118827550.1\|270774_273519_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_013060712.1\|273701_274808_-	FecR domain-containing protein	NA	NA	NA	NA
WP_013060713.1\|274797_275382_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_043551747.1\|275540_277643_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_013060715.1\|277733_278222_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_013060716.1\|278623_278920_-	UPF0175 family protein	NA	NA	NA	NA
WP_118825851.1\|279121_279298_-	hypothetical protein	NA	NA	NA	NA
WP_013060718.1\|280642_281056_-	PIN domain-containing protein	NA	NA	NA	NA
WP_013060719.1\|281097_282297_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0A8WI33	Clostridium_phage	2.4e-35	29.3
WP_118825853.1\|282300_282681_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_013060720.1\|282881_283181_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_013060721.1\|283416_283794_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_013060724.1\|284883_285291_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_013060725.1\|285306_285528_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_013060726.1\|285580_286039_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_013060729.1\|287206_287530_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_013060731.1\|287933_288362_+	hypothetical protein	NA	NA	NA	NA
WP_013060732.1\|288541_289804_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	I7II68	Campylobacter_virus	3.2e-09	29.0

DBSCAN-SWA_2

833234 : 897775

Bacillus_phage(20.0%)

integrase,transposase

attL 858814:858835|attR 900738:900759

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148278478.1\|833234_833642_-\|transposase	transposase	NA	NA	NA	NA
WP_081580656.1\|833683_834007_-\|transposase	transposase	NA	NA	NA	NA
WP_013061126.1\|836642_837950_+	chain-length determining protein	NA	NA	NA	NA
WP_013061127.1\|838270_839512_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013061128.1\|839582_840977_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.3e-84	40.8
WP_013061130.1\|841252_843052_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.1e-29	24.9
WP_013061131.1\|843115_844114_+	SDR family NAD(P)-dependent oxidoreductase	M4QPK0	Synechococcus_phage	1.7e-26	31.0
WP_051010766.1\|844145_845372_+	LegC family aminotransferase	A0A0F7LAY0	uncultured_marine_virus	1.2e-16	25.8
WP_158442673.1\|845429_846389_+	N-acetylneuraminate synthase family protein	NA	NA	NA	NA
WP_013061134.1\|846416_847223_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_013061135.1\|847223_848138_+	hypothetical protein	NA	NA	NA	NA
WP_013061136.1\|848134_849211_+	N-acetylneuraminate synthase family protein	NA	NA	NA	NA
WP_013061137.1\|849248_849878_+	acetyltransferase	NA	NA	NA	NA
WP_013061138.1\|849889_850939_+	CBS domain-containing protein	H9NC64	Sphingomonas_phage	2.0e-09	28.9
WP_013061143.1\|854008_855418_+	hypothetical protein	NA	NA	NA	NA
WP_013061144.1\|855972_856698_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_081580657.1\|856685_857384_+	AAA family ATPase	NA	NA	NA	NA
WP_148278479.1\|858192_858333_+	hypothetical protein	NA	NA	NA	NA
858814:858835	attL	NA	NA	NA	NA
WP_158442674.1\|859253_860066_+	glycosyltransferase	NA	NA	NA	NA
WP_081580659.1\|860074_861325_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_081580660.1\|863239_864445_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_158442675.1\|864522_865347_+	sulfotransferase domain-containing protein	NA	NA	NA	NA
WP_013061149.1\|865357_866143_+	sulfotransferase domain-containing protein	NA	NA	NA	NA
WP_043551943.1\|866225_867311_+	glycosyltransferase	NA	NA	NA	NA
WP_043551945.1\|867413_868265_+	sulfotransferase domain-containing protein	NA	NA	NA	NA
WP_013061152.1\|868338_869316_+	GDP-mannose 4,6-dehydratase	A0A0E3FNQ3	Synechococcus_phage	1.6e-37	33.5
WP_013061153.1\|869395_870538_+	NAD-dependent epimerase/dehydratase family protein	A0A0K0KWL2	Prochlorococcus_phage	1.5e-66	43.0
WP_013061154.1\|870557_871817_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_043552997.1\|872242_873604_+	nucleotide sugar dehydrogenase	M1HKZ1	Paramecium_bursaria_Chlorella_virus	5.4e-31	26.3
WP_013061156.1\|873726_874320_+	archaeosortase/exosortase family protein	NA	NA	NA	NA
WP_148278367.1\|874461_874866_+	hypothetical protein	NA	NA	NA	NA
WP_158442676.1\|874919_875093_-	hypothetical protein	NA	NA	NA	NA
WP_013061159.1\|875459_876578_-	hypothetical protein	NA	NA	NA	NA
WP_013061162.1\|877717_878059_+	hypothetical protein	NA	NA	NA	NA
WP_043552999.1\|878321_878636_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_148278480.1\|878614_878962_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_148278369.1\|879934_880186_+	hypothetical protein	NA	NA	NA	NA
WP_043551952.1\|881670_882018_+	hypothetical protein	NA	NA	NA	NA
WP_081580662.1\|882665_883055_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_013061170.1\|883051_883336_+	PIN domain-containing protein	NA	NA	NA	NA
WP_148278370.1\|883423_883615_-	hypothetical protein	NA	NA	NA	NA
WP_013061172.1\|884021_885263_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_158442677.1\|885444_885600_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_013061174.1\|885996_886263_-	UPF0175 family protein	NA	NA	NA	NA
WP_013061175.1\|886629_887487_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013061176.1\|887530_888580_-	hypothetical protein	NA	NA	NA	NA
WP_043551956.1\|888722_889430_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043551958.1\|889671_889950_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_013061179.1\|890356_890692_-	hypothetical protein	NA	NA	NA	NA
WP_013061180.1\|890970_891252_+	hypothetical protein	NA	NA	NA	NA
WP_043551960.1\|891320_891770_+	PIN domain-containing protein	NA	NA	NA	NA
WP_051010768.1\|891971_892322_-	XRE family transcriptional regulator	A0A0D5BHH6	Escherichia_phage	1.1e-09	42.5
WP_051010769.1\|892516_892723_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013061184.1\|893357_893855_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_013061185.1\|893954_894218_-	UPF0175 family protein	NA	NA	NA	NA
WP_081580663.1\|894691_894838_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_013061186.1\|895108_896299_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0A8WI33	Clostridium_phage	7.0e-35	29.5
WP_013061188.1\|896770_897775_-\|transposase	IS110 family transposase	NA	NA	NA	NA
900738:900759	attR	NA	NA	NA	NA

DBSCAN-SWA_3

901794 : 934231

Enterococcus_phage(16.67%)

integrase,transposase

attL 898041:898066|attR 932590:932615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
898041:898066	attL	NA	NA	NA	NA
WP_118841017.1\|901794_902512_+\|transposase	IS1-like element ISSru2 family transposase	NA	NA	NA	NA
WP_013061195.1\|902626_902902_+	hypothetical protein	NA	NA	NA	NA
WP_013061196.1\|902905_903277_+	hypothetical protein	NA	NA	NA	NA
WP_013061198.1\|903844_904165_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_013061199.1\|904175_904529_+	DUF5615 family PIN-like protein	NA	NA	NA	NA
WP_013061200.1\|904652_904802_+	hypothetical protein	NA	NA	NA	NA
WP_158442679.1\|904792_904969_+	hypothetical protein	NA	NA	NA	NA
WP_043551965.1\|905569_905803_+	DUF2281 domain-containing protein	NA	NA	NA	NA
WP_013061203.1\|905799_906171_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_148278373.1\|906480_906768_+	DUF5615 family PIN-like protein	NA	NA	NA	NA
WP_081580720.1\|906826_907048_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_051010771.1\|907278_907650_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_013061207.1\|907858_908098_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_173387059.1\|908094_908235_-	PIN domain-containing protein	NA	NA	NA	NA
WP_118828477.1\|908292_909011_-\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_013061211.1\|909027_909186_+	hypothetical protein	NA	NA	NA	NA
WP_013061212.1\|909645_909942_+	hypothetical protein	NA	NA	NA	NA
WP_013061213.1\|910179_911943_+	hypothetical protein	NA	NA	NA	NA
WP_013061215.1\|912205_912448_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_013061216.1\|912444_912792_+	hypothetical protein	NA	NA	NA	NA
WP_043551967.1\|913123_913816_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_013061218.1\|914221_914797_+\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_051010773.1\|914985_915438_+	hypothetical protein	NA	NA	NA	NA
WP_013061221.1\|915646_917704_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_158442680.1\|918101_919115_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_081580721.1\|920252_920948_+	sugar transferase	NA	NA	NA	NA
WP_081580666.1\|920913_921339_-\|transposase	transposase	A0A288TXV8	Enterococcus_phage	2.6e-24	57.6
WP_013061225.1\|921837_922773_+	NAD-dependent epimerase/dehydratase family protein	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	2.8e-39	34.1
WP_013061228.1\|923549_923858_+\|transposase	transposase	NA	NA	NA	NA
WP_081580667.1\|925411_925594_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	8.5e-09	51.8
WP_043551974.1\|925610_925895_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_011403402.1\|926005_926695_-	UpxY family transcription antiterminator	NA	NA	NA	NA
WP_013061231.1\|927161_927326_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_043551976.1\|927410_927644_-	hypothetical protein	NA	NA	NA	NA
WP_081580668.1\|927585_927837_-	hypothetical protein	NA	NA	NA	NA
WP_013061233.1\|927882_928185_-\|transposase	transposase	NA	NA	NA	NA
WP_043551980.1\|928944_929928_+	GDP-mannose 4,6-dehydratase	A0A1V0SAI6	Catovirus	4.8e-37	32.2
WP_013061235.1\|930113_930401_+	UPF0175 family protein	NA	NA	NA	NA
WP_118826138.1\|930400_930592_+	hypothetical protein	NA	NA	NA	NA
WP_043551984.1\|931202_931502_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_011403410.1\|932179_932425_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_043551986.1\|932695_933094_+\|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	2.6e-18	34.4
932590:932615	attR	NA	NA	NA	NA
WP_013061241.1\|933097_934231_+\|transposase	transposase	G9CU70	Helicobacter_phage	3.4e-63	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_014030

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_014030_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014030_1

30193-30416

Orphan

Consensus_repeat	Method
AAAGCTTCAACCAAGACATCGGCCCCTGGGACGTCTCCAGCGTGGAGAACATG	PILER-CR

2 spacers

The CRISPR arrays of NC_014030_1

>merge|NC_014030|1|30193-30416|PILER-CR
AAAGCTTCAACCAGGACATCGGCCCTTGGGACGTCTCCAGCGTGGAGAACATGGAGCTCATGTTCGAAGAAGCCACTAACTTCAACGGAGACATCGGCTCCTGGGACGTCTCCAGCGTAAAGAATATGAGACGTATGTTCGGCAGAAGAAGTGCTAGTGAGCCCGGTGCTCAAAGCTTCAATCAAGACATCGGCCCCTGGGACGTCTCCAGCGTGGAGAACATG

>NC_014030|1|1|30193-30416|PILER-CR
AAAGCTTCAACCAGGACATCGGCCCTTGGGACGTCTCCAGCGTGGAGAACATG	GAGCTCATGTTCGAAGAAGCCACTAA
CTTCAACGGAGACATCGGCTCCTGGGACGTCTCCAGCGTAAAGAATATGAGAC	GTATGTTCGGCAGAAGAAGTGCTAGTGAGCCCGGTGCTCAAAG
CTTCAATCAAGACATCGGCCCCTGGGACGTCTCCAGCGTGGAGAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014030.1\|WP_013060381.1\|20706_21474_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_014030.1\|WP_013060383.1\|23023_23308_+\|hypothetical-protein	unknown	unknown	unknown
NC_014030.1\|WP_158442642.1\|46532_47483_+\|cellulose-1,4-beta-cellobiosidase	unknown	unknown	gnl\|CDD\|225936
NC_014030.1\|WP_013060393.1\|47520_48096_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274043
NC_014030.1\|WP_043551516.1\|19904_20375_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|313734
NC_014030.1\|WP_081580615.1\|18217_18808_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239308
NC_014030.1\|WP_013060382.1\|21476_21665_+\|hypothetical-protein	unknown	unknown	unknown
NC_014030.1\|WP_148278314.1\|56984_57230_-\|hypothetical-protein	unknown	unknown	unknown
NC_014030.1\|WP_158442641.1\|41710_46219_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_014030.1\|WP_043551521.1\|27852_28077_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370792
NC_014030.1\|WP_148278311.1\|23890_25231_-\|replication-protein	unknown	unknown	gnl\|CDD\|335810
NC_014030.1\|WP_043551514.1\|19001_19631_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NC_014030.1\|WP_051010711.1\|52681_54217_+\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|274305
NC_014030.1\|WP_013060379.1\|19637_19871_+\|hypothetical-protein	unknown	unknown	unknown
NC_014030.1\|WP_013060394.1\|48600_51438_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_014030.1\|WP_148278319.1\|36401_36932_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_014030.1\|WP_043551530.1\|56198_56759_+\|hypothetical-protein	unknown	unknown	unknown
NC_014030.1\|WP_043551525.1\|54292_54520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|280763
NC_014030.1\|WP_013060377.1\|17641_18277_+\|hypothetical-protein	unknown	unknown	unknown
NC_014030.1\|WP_148278312.1\|37143_41067_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|275036

Protein	Function_ID	Function_description	E-value
NC_014030.1\|WP_013060381.1\|20706_21474_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	6.44995e-27
NC_014030.1\|WP_158442642.1\|46532_47483_+\|cellulose-1,4-beta-cellobiosidase	gnl\|CDD\|225936	COG3401, COG3401, Fibronectin type 3 domain-containing protein [General function prediction only].	2.20041e-09
NC_014030.1\|WP_013060393.1\|47520_48096_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	4.77449e-41
NC_014030.1\|WP_043551516.1\|19904_20375_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|313734	pfam10571, UPF0547, Uncharacterized protein family UPF0547. This domain contains a zinc-ribbon motif.	2.21462e-05
NC_014030.1\|WP_081580615.1\|18217_18808_-\|redoxin-domain-containing-protein	gnl\|CDD\|239308	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.	1.05523e-11
NC_014030.1\|WP_158442641.1\|41710_46219_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.60277e-10
NC_014030.1\|WP_043551521.1\|27852_28077_+\|hypothetical-protein	gnl\|CDD\|370792	pfam10043, DUF2279, Predicted periplasmic lipoprotein (DUF2279). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00244351
NC_014030.1\|WP_148278311.1\|23890_25231_-\|replication-protein	gnl\|CDD\|335810	pfam04492, Phage_rep_O, Bacteriophage replication protein O. Replication protein O is necessary for the initiation of bacteriophage DNA replication. Protein O interacts with the lambda replication origin, and also with replication protein P to form an oligomer. It is speculated that the N-terminal half interacts with the replication origin while the C terminal half mediates protein-protein interaction.	9.45192e-05
NC_014030.1\|WP_043551514.1\|19001_19631_+\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	1.00116e-53
NC_014030.1\|WP_051010711.1\|52681_54217_+\|PD40-domain-containing-protein	gnl\|CDD\|274305	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.6262e-34
NC_014030.1\|WP_013060394.1\|48600_51438_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00268468
NC_014030.1\|WP_148278319.1\|36401_36932_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	5.82224e-12
NC_014030.1\|WP_043551525.1\|54292_54520_+\|hypothetical-protein	gnl\|CDD\|280763	pfam02653, BPD_transp_2, Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.	0.00575542
NC_014030.1\|WP_148278312.1\|37143_41067_+\|VCBS-repeat-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	5.59664e-12

>NC_014030.1|WP_043551521.1|27852_28077_+|hypothetical-protein
MGIVVGAYYGSREAVGWPHRTSLLAAGGSALGAGLLKELYDRSKIGNRFSEADMIFNVVGTGMGIGVVLGLRES
>NC_014030.1|WP_148278311.1|23890_25231_-|replication-protein
MSDSALRCLLGLIHLSFRFDPAEGEWTSAEGWLSRSDVEAASGLSDQGTRNGLSELESIGWARADRSGQGYRYQLALGVPTARFTQVPTALLDKLSTFDTGAGLRVVLAVLRGTWGWTSKEMDPQSGTLQAVHDRWTELPSRALAKMTGRSKTAVTRAAKALQGTWIGRVRPGNGACKYRFLPEAVGDASGRSSSSSSTGSSSENSRDSDSFCRGDANDLTPDRQNYDPPSSYKKSSSKDKHSQASEKNRPEQRLGATSGKCSAVPAEQSRGNRPTPAGRDHPERQTSGESSPPANYTDLPPEKQELAQKLSNVGVWAGRIAEVLSRFSCSRIRANFQLYRRRAAEQTIRKPGAWLHEAITEGYALQPSGEDGPGGPSKESFLPSLEHKETVSRAEKEEYTAQGIPKDRFHRCLSGPSGGDGPRYMYFDPEIGEPADRRQTGQKST
>NC_014030.1|WP_013060383.1|23023_23308_+|hypothetical-protein
MHSRYSEDVSVEELPSLPDFAFFLRPGRADLLEEDEFLEEESLDLLDVFILEIDLCTLSILPPILETSRKRTPKAAPLNPDAIPDITSSVFTSP
>NC_014030.1|WP_013060382.1|21476_21665_+|hypothetical-protein
MKQVLKVSLFSGCPRCEDEIAVDRFTVRVASLAELDLNLLDTIDAFLRQKECTRDETGHWTF
>NC_014030.1|WP_013060381.1|20706_21474_+|IS5-family-transposase
MRQKRYSSDLTDSQWEIIKPYFPTARRRQHDLRREVLDAILYVVKTGCQWRMLPGEFAPWQTVYYYFDQWREEGRLQCLLSALRRTVRREAGREGEPSALIIDCQSVQTSRSGGIASFDAYKHVKGRKRHIVTDTQGLPWNVLVHAAGDHESQWALHALKPVESWTDRVETVFADSAYQGLGNEIESDLDWSMSIVEPEGEKSGFSVDPKRWIIERTFSWLGGWRRLNRDYERHTDSSETMVRAALAKIALNRLV
>NC_014030.1|WP_043551516.1|19904_20375_+|zinc-ribbon-domain-containing-protein
MGAALFFWIVFSVLIGALASSWGRSGLGYFAGSLVISPLLTVLVLLAQGRANVDSTDTTAGSSSGRSVPFENQRKKCPDCAERVKLEARVCKHCGHEWTEKEVKGGLRAAVEQRSETLVHCSRVDKIVSPEGVMCPECGSEFDDEDHTPAREYFQI
>NC_014030.1|WP_013060379.1|19637_19871_+|hypothetical-protein
MGKEGNLAEQTGRNTEKSEEAQEQVEKAAEEETKRLNANVPESLHQAVRMEAARRGVEMKQVMVEALTEYLPNYSSE
>NC_014030.1|WP_043551514.1|19001_19631_+|AAA-family-ATPase
MRVVSVLNQKGGSGKSTLATNLAASIQRRGRRVALVDADPQKTASEWASRGEDTPPTYEATEDLAKNIPALEGSFDVVILDGAPRMTELATDAVKVADLVLIPVQPSGADLWAAEDILDTVRARQRVSDGPEAAFVVSRAVSRTNLAKTIEDALASYDADVLDSRTGHRVAYTEALGSGQTVLDMGGKAANEIQSITDEVLDVLTHTNE
>NC_014030.1|WP_081580615.1|18217_18808_-|redoxin-domain-containing-protein
MHKPSAHHYHLRASVLIFALSAASLLGLSPLPGLSPEVASAQPESAEIGKQVPGFEIEALRDSGRAITPSDFEGRYVLLNLWATWCGPCIEKISALQSVPPGSWTKRCRAPEICPALFSRIGGISRPDCSPARLSSNANAFHHGCFPTRYNTEVPNQTARRADYMAQVAMVQVAAPPSTTKNGQDRAAHEKKEGKY
>NC_014030.1|WP_013060377.1|17641_18277_+|hypothetical-protein
MSQPEYIAALLSIIVGLALTDLARSFRELVRPQRKVNWHWLPLLWAANMFFLAIQLWWNSFTLLTEATSTFFFPFLLTFLLLYLACAFALPDPGWRKSQPRGDAPGSKVSIETLGTEPSLDLKAFHFSKAHRRWFFGILIGSLVAGQVGTQVARALAEGFSASRVEMLLNGGAAALLGTLGLTNRWWVHAPLSVLSFLFLVRSTVLTVLGG
>NC_014030.1|WP_148278319.1|36401_36932_+|T9SS-type-A-sorting-domain-containing-protein
MADRRRAEGEGETFRLRLESQVEGPIRIQARGADSLGRRSAALIDRSEKTTYDLSRDGPIQITPGQERRRLEVAIGSESYVEGKREEAMPEEVRLTSYPNPAGRRATVEYALPEAREVTLQVYDVLGRRVATLEQGRKKAGRHTARLETGRLSSGVYFGRLEAGEQTRTQKITVVR
>NC_014030.1|WP_148278312.1|37143_41067_+|VCBS-repeat-containing-protein
MSKASGAPSFQRTIASAGLLGPEKTATGDVDGDGDEDVVAFARAKGELVWYENKSTGFGEKQVIAAGSEDAEALAVADLTNTGRADLLVAAGEALVYYESNAGTDGASANGFSEKTTIGSEVFSRYVTVAQLDSTAGPEIIVEEGYYPNQNGTAGADSDGFGELVRLDREPRYAADFDGDGDQDLAARREWIPNQIGESGADADGFGRPRPFGRNFEFVLGAADLDGDSDADVVGLARTAEGSGIAWLENQIGESGTDENFGAPRLISDKSLEDVDRSEVLLGPIDGDGDVDLLLRRAEFSKAVVWHENQVGEPGADNGGFGEETLITRQPRGLLGSSDVALAQIDGDSGEDVLLASFQGRSRLSFFPADAGEQGGFGGERLISVPSEVPLAQDVAAADFDGDGDPDAATAAAGSSQVAWHENQTGESGGGSDSFGPPQVISAAEDSVMSLFAADFDGDGDPDLVSASGTNSRIAWHENQIGEDGADADGFADPKVITTGVTEARDVFVGDLDGDGDPDVVTGAKEAPTVAWHENQIGEDGAGGFSAQKVIAANSGQVTEVSVSDLDGDGTPDVLVSTEDELFWYPNQVGTSGSGDDGFGAALALDAKLSPSVFAADLDEDGANDVLTDDEWFRNRQDGPFPGDDGFGDGVQIFRGQEQDIIAADLDGDGDRDPVLVGYSSLGWRQNTIAEGFAFGDRNPSQTITSGLLNGQSVAASDLNGDGAPDLLAVSSSGGQFIWLENQSEAAPDPSSTATKTISEAGSSAYGTTGAAVSTRGVGGSGQVTVRRFDSAPENPEGISKANVGQYRHVIENTGPLTLGGGTQVRFDTSALGGIDKPRNVTVYGRRSPGTGEFRALPTTFDADAGELVVPSSSFGEFAFGSATEPLFPYPDRLVAEASRTFDGANEPGDYRLVALPGQVDTPLAQTLNGSAGTDWQAFRESGEGFEKYDGSEAFNFRPGNGFWVTGTQEWSVSDTLATVSLSGRRAASVDLDGDSLWTIVSNPLNRDVAWPSVVEESGLDAPLWRFDAREGFVQADTMRSATSGEAYYVFNGAETDSLTVPFPVDSGQKARAKKEDQDPLLSVSARPAEGGLPSTVRLGIGERRSLLAPPGQFEPVSLRLRPESGERALMVARRPAGEEEGRVFELRLTPRVEEAVRLRVANLEAAGGRSVALLDPGAGKTYDLQARTSVTIEPEGKTNLLKVAIGTESFVEDRAENVLPSEVRLTSYPNPIRQQGTLEYALPESREVTLQVYDVLGRKVKTLTRGQKEAGRHRVDLQTRQLSSGIYFGRLKAGGQTRTQKITVVR
>NC_014030.1|WP_158442641.1|41710_46219_+|T9SS-type-A-sorting-domain-containing-protein
MAHAQEPEGAKTLLDRLEQSDRVDQVPVGVLNAVAQRHPRRLTESQRERLRKSLRRRPGGKAALSRGKAALSDLSIEESLQQIGGSRWPRQDINFVPDGTAIPAGDVNGDGINDWIYRYSSVADDRTSDLSDRTTKTLLVYGGGDFSARYYDEIYYRDLAPTGNFIGGGNADAYQSTDGGIRIYEGTGQGYRQAGEKLDVPSSPSLVADIDGDGYDDLIASSPTATDITVIYGAEEVSGVTAETFNPSFIGEQSFSYGASDVDGDGAGEIIRVGGQLRRTEDSLTVGVFAQPDSGSALSKAQKFSLNPSAPVSDARFLNVDLADIDGSGTEEILLSGSGILESTLVFTSSSGSYDPTPISYTAGAGDLNPVGDLNGDGRADFVFDDGESTAIGFGSEAVRRGLSSDLTFAEDSEPVSIARSFPKPFGDLTGDGTDNLIAQVSPSEGVGSRLVQVTENGSFDSGTTDILFDRSTYSGDGVMQGVNVGDWDGDGTDDVALLYRDGRAEIYFGDPAQSVSPDVTLTGPRYRSGGGESAGSVAAGDFTGNGDQNLAIAWESASQTVAVYEAGDGDSPVQTISLSDLGIFDRATGIETSDDGPNGVVANLGDINGDGTVDLGVTQPEVETDAARKVFLFCGGPGLSSQPSETIDYTDREDTSDDFGQVLRGVGDVNGDGTDDFLVGDTFSSFSGSEFPVGALGNRRAQGALFVHYGNPGGPQSQDADEILAVPTLEETSGRQRINSAFGFSGIAVGDFNGDGTPDVAAKPGISDFRDSNNGAQAIRIFYGGPEFDGTPDAELPIPGVIDTFSDSEFASNSFGALTALPPASSGGPDRLVQETYNPSNALVYGPGPDTTSSLEKTALLRGPDQRSGLGAGTIFINLPQNASSAVGDFNGNGQVNLVMPQLLSADFRGAPAYAYELGSGSGPEETPVASSTRPVENPAGSSADFDGTGTSIVFSDSTEGSGEVTVERFGSRPEGGGTIGAENVSEYRVEITATGGLSVGDSTEVRFDASMLEGTSDPGQVTIYTRELSGIGGFNQVPTEYDASSEELVGLVSGFSEFAFGSDTEPLFSYPEALSVEASRAFPSASEPGDYRLVALPGQVDTPLAQAFSGEAGADWQAYWDDGSAESPFLRYEESETFDFRPGRGFWVTSRQDWSFSDSLSTVPLGAGQATAVPLNGDSTWTIVSNPLDRDAAWRSVQAENDITAPLWRFDGSEGFVRADTMASAASGEAYYFFNGAGLDSLRVPYPATGTKSRTDSKSAPASAPAAPLALSAAPAGTDDPPSTIHVGLSEQERSALAPPGRFEPASLRIVGSEKGKSSSPRARSYMVKTRPAGTGGGYTFQLRLESQPEEPVRLSTSGLEGRSASLIVPSTGKSYDLRPGRAVEVEPEGGATRLRLAVGTSQYVGEEARSALPEEMSLTSYPNPAGRRATVEYALPEARKVTLEVYDVLGRRVATLADGKKQAGRHEASLQARKLPSGVYFGRLEAGGQTRTQKITVVR
>NC_014030.1|WP_158442642.1|46532_47483_+|cellulose-1,4-beta-cellobiosidase
MAVAGCGGAGSNEEGGGGDDGGGDDGGGGGTGLSAPAAPSGLEATPQDGAVQLGWDAVDGADTYNVYRSTSSGVDVSSSALDTGIDQSSYTDGTAESGTEYFYVVTAVASEDGETAESDPSGEASAALLASPSGLSATPGDGTTQLSWEAAGGADTYNVYRSTSSGVDASSDPLGAGISSTEYADESAQNGTEYFYVVTAAASGDRESDPSGEVSAVPFAAPSGLEGTSRDSEVALSWQGADGADTYNVYRSTSSGVDVSASPLDTGISSSEYTDGSAENGTKYYYRVTSVNPSGAESEASGEVEKTPFSDPPDRP
>NC_014030.1|WP_013060393.1|47520_48096_-|tyrosine-type-recombinase/integrase
MARPDKLPKILTEAETDRLLAQPNQRYFGPHRDYLYMRAMLKAGLRASEATALRPEHIDLMSGKLMVREGKGAKDRTLWIGEELLEELQAWMDRRKATAPGADYLLPTSKSTQVATSHLRRSVKRYAEGANIEEVGRVSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMIYTHVVDEELEGAMKGL
>NC_014030.1|WP_013060394.1|48600_51438_+|carboxypeptidase-regulatory-like-domain-containing-protein
MQLSTSRVWFVLALFSLSILVSCDSGGGTPEPDEPSEVDVDVAGAVTSAENDEPIGGASVEVLRADNGNTLASATTDTTGSYEATFTIEESGTPDQIRLELSAEGFVDKEVSTGFQPSVTKDVTLEAMSMEASASGMVTDSDTGDPIEGASVTGTRPDGGEQLFETTTSSDGTYEASFEVADEPSEIEISANADGFEMASQTVTFSEDISVSFELPSATTQSTASGQVTREDNGDPIGGASVTGTRAGSGEKLFETTTASDGTYEASFEVADEPDEVTVQAEAEDFESGEQTANFGEQVTADVSLQPATIEATASGTVSRSDSGDPIEGATVTGTRADSGDKLFEATTSSDGSYKASYSLEATDEPSDVDFAVSAGDFKSGGATVAFAKEIARDFQLEPKTTEATVSGTVTRSDNSDPIDGVTVTGSPAGGSEKLFETTTNASGEYETTFEVKVPDEPDQISVAANSGDYDGSEKTVDFGSAITADFGLSPSEVNVTIDGTITAKLDGSTVEGAEVSAFRPNVSGALSSTTSKMGGAYSLSFTVLAPDAPAELRLEANESRFDEATLTVGFSESVSQGIALPSIEISSIEELQAIQTDSNFPIDGFYVQTSDIDASKTASWNGGKGFEPIGDDAISFTGAFNGNSFAIENLTVHRGEEDLVSLFGAVGEGGAVRNVVLQGVSIIEETSVLGSSSVGGLAGFNVGRISNCEVSGEVNGRINTGGLVGTNRGVISSSRASVTVSGVVETGGLVGENSSGVGTGIEGSIQNSIATGNVAGGNKTGGLVGDNFQTVEASVATGSVSGEVGNSESVGGLIGRINGSSNVISSYATGDVSGASEVGGLAGTNISGIEISESYASGLVSGDEDVGGIIGLNGTDGANLNALYWDTEASSQSSGVGRGDATGTTGLSTSEMQGNSAEENMDGFDFQNTWRVVMGDYPALQWEE
>NC_014030.1|WP_051010711.1|52681_54217_+|PD40-domain-containing-protein
MDGGDNGDGSGGNGTTLSAPSGLSGSAGDGTVDLGWDAVSAEDLGGYNVYRSTSSISDISGKSPLNESLLPGTSYTDDGVENGTTYYYVVSAVDTSGNESGSSSEVTASPSDMTAPAAPSGFSGSAGDGTVDLGWDGVSAEDLGGYNVYRSTSSISDISGRSPLNESLLSGTSYTDDGVENGTTYYYVVSAVDTSGNESDPSSEVTASPSGSGGGGSANNLIAFSSEDTGGDAEIYTVRPDGSNLRQVTNSATGISPTWSPDGSRIAFTADGGGDDANDPIATIRPDGSDLSPVTDPADVEDGRIADVAPEWSPSGDRIAFSRDPDTTARDTTEPRIYTVDPDGSDLRQVAEDKAIGFNPTWSPDGSRIAFSTPADPSVIFTIRPDGSDLRQVTDRSDIDGNSGDLAPAWSPDGSRIAFQSDRDGGSSFDIYTVDPDGSDLKQVTTAGDRDDRVDDISPAWSPDGSRIVFGSNRDGSAVPDIYTIRPDGSELERITNNDRLDFGPAWSPSQ
>NC_014030.1|WP_043551525.1|54292_54520_+|hypothetical-protein
METDLTAGTAEPKGQGKGRDRPTDPGLRCLALTREDFGRLVEAVGSDPVASETAGGHGEEPKRSDPAAVGATRRF
>NC_014030.1|WP_043551530.1|56198_56759_+|hypothetical-protein
MPAALRRKLFFSLLLALTVPLVSCDSGGSSDGSQNEGPQLEDLHSTNRLITSEGADGEVFDATESELDYYYRDDSDGSDVHICLGDDTIVKGRLSDISTDVNSSGNLVRTQEIVNADGVVLYDEENEGGTTTLEYLEIGTDVGETTRFEVQESDQSSIEGNTDTVRGIEEIPETDEDCANREDFHN
>NC_014030.1|WP_148278314.1|56984_57230_-|hypothetical-protein
MNNSLGSPSRSDTVNGRRYLNSNAQVYLNPEGKPVAFRRVRVLQSGTFAGASRLQLVTPRKTASISRTCFDAYRAECHPLN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014030_1	1.2\|30325\|43\|NC_014030\|PILER-CR	30325-30367	43	NC_014030.1	33594-33636	0	1.0

1. spacer 1.2|30325|43|NC_014030|PILER-CR matches to position: 33594-33636, mismatch: 0, identity: 1.0

agacgtatgttcggcagaagaagtgctagtgagcccggtgctc	CRISPR spacer
agacgtatgttcggcagaagaagtgctagtgagcccggtgctc	Protospacer
*******************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_014030_1	1.1\|30246\|26\|NC_014030\|PILER-CR	30246-30271	26	NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	30246-30271	1.0
NC_014030_1	1.2\|30325\|43\|NC_014030\|PILER-CR	30325-30367	43	NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	30321-30363	1.0
NC_014030_1	1.2\|30325\|43\|NC_014030\|PILER-CR	30325-30367	43	NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	33594-33636	1.0

1. spacer 1.1|30246|26|NC_014030|PILER-CR matches to NC_014030 (Salinibacter ruber M8 plasmid pSR61, complete sequence) position: , mismatch: 0, identity: 1.0

gagctcatgttcgaagaagccactaa	CRISPR spacer
gagctcatgttcgaagaagccactaa	Protospacer
**************************

2. spacer 1.2|30325|43|NC_014030|PILER-CR matches to NC_014030 (Salinibacter ruber M8 plasmid pSR61, complete sequence) position: , mismatch: 0, identity: 1.0

agacgtatgttcggcagaagaagtgctagtgagcccggtgctc	CRISPR spacer
agacgtatgttcggcagaagaagtgctagtgagcccggtgctc	Protospacer
*******************************************

3. spacer 1.2|30325|43|NC_014030|PILER-CR matches to NC_014030 (Salinibacter ruber M8 plasmid pSR61, complete sequence) position: , mismatch: 0, identity: 1.0

agacgtatgttcggcagaagaagtgctagtgagcccggtgctc	CRISPR spacer
agacgtatgttcggcagaagaagtgctagtgagcccggtgctc	Protospacer
*******************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_014157

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11673

Pelagibacter_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081580620.1\|1008_1713_+	thermonuclease family protein	NA	NA	NA	NA
WP_158442644.1\|3964_5203_-	hypothetical protein	NA	NA	NA	NA
WP_013124648.1\|5411_6059_-	hypothetical protein	NA	NA	NA	NA
WP_043551551.1\|6283_6895_-	hypothetical protein	NA	NA	NA	NA
WP_118841017.1\|7599_8317_+\|transposase	IS1-like element ISSru2 family transposase	NA	NA	NA	NA
WP_043551553.1\|9181_9490_+	hypothetical protein	NA	NA	NA	NA
WP_013124653.1\|9570_10011_+	curli production assembly/transport component CsgF precursor	NA	NA	NA	NA
WP_051010719.1\|10383_11673_+	hypothetical protein	M1ICK2	Pelagibacter_phage	5.1e-39	45.9

DBSCAN-SWA_2

33011 : 38589

Escherichia_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013124663.1\|33011_33800_-	DUF3435 domain-containing protein	A0A142F1N9	Bacillus_phage	7.2e-12	32.4
WP_013124665.1\|34951_35860_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	7.0e-27	35.4
WP_043551565.1\|35872_36433_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	1.6e-42	45.5
WP_043551567.1\|36462_37380_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.2e-95	59.7
WP_013124668.1\|37521_38589_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.9e-88	48.4

DBSCAN-SWA_3

57294 : 61800

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013124686.1\|57294_61800_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.3e-46	31.2

DBSCAN-SWA_4

71552 : 74661

uncultured_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051010733.1\|71552_72524_-	replication initiation protein	A0A218MNI2	uncultured_virus	4.4e-11	29.7
WP_013124700.1\|73435_73717_-	hypothetical protein	NA	NA	NA	NA
WP_081580623.1\|73773_74661_-	ParA family protein	A0A240F4U1	Ochrobactrum_phage	1.9e-08	29.2

DBSCAN-SWA_5

82934 : 83426

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158442647.1\|82934_83426_+	reverse transcriptase-like protein	A0A0U4J920	Pseudomonas_phage	2.4e-13	43.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014032

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_014030

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_014157

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection