CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013929	Streptomyces scabiei 87.22, complete genome	13 crisprs	csa3,c2c9_V-U4,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	0	4	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_1

4027074-4027292

Orphan

Consensus_repeat	Method
CTCGCGACCGGGTGCTGCGTTCGGCCACCACACCCCGTGGACCACGCGACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_1

>merge|NC_013929|1|4027074-4027292|CRISPRCasFinder
CTCGCGACCGGGTGCTGCGTTCGGCCACCACACCCCGTGGACCACGCGACCGAGCCCTCGCCCGATCGCCGCGCCCCCGCCGACTCGCGACCGGGTGCTGCGTTCGGCCACCACACCCCGTAGACCACGCGACCGATCCCTCGCCCGATCGCCGCGCCCCCGCCGACTCGCGACCGGGTGTTGCGTTCGGCCACCACGCCCCGTCGGCCGCGGCGACCG

>NC_013929|1|1|4027074-4027292|CRISPRCasFinder
CTCGCGACCGGGTGCTGCGTTCGGCCACCACACCCCGTGGACCACGCGACCGA	GCCCTCGCCCGATCGCCGCGCCCCCGCCGACTCGCGACCGGGTGCTGCGTTCGGCCACCACACCCCGTAGACCACGCGACCGATCCCTCGCCCGATCGCCGCGCCCCCGCCGA
CTCGCGACCGGGTGTTGCGTTCGGCCACCACGCCCCGTCGGCCGCGGCGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_046774029.1\|4029235_4029760_-\|DUF3017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378602
NC_013929.1\|WP_046774030.1\|4024605_4025376_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_037727188.1\|4038004_4038934_+\|DNA-directed-RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|132028
NC_013929.1\|WP_037727651.1\|4031840_4032158_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013001301.1\|4017608_4018622_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NC_013929.1\|WP_013001315.1\|4032399_4033962_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_013929.1\|WP_037727195.1\|4027336_4028608_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|371292
NC_013929.1\|WP_013001307.1\|4024044_4024431_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013001313.1\|4031177_4031756_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370723
NC_013929.1\|WP_013001320.1\|4039051_4039936_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NC_013929.1\|WP_013001306.1\|4022838_4024023_-\|glutathionylspermidine-synthase-family-protein	unknown	unknown	gnl\|CDD\|367631
NC_013929.1\|WP_013001317.1\|4035063_4035840_+\|membrane-protein	unknown	unknown	unknown
NC_013929.1\|WP_078580125.1\|4018721_4019342_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_013929.1\|WP_013001316.1\|4033958_4034588_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NC_013929.1\|WP_106437410.1\|4019409_4020240_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013001305.1\|4021187_4022636_-\|glycine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|184161
NC_013929.1\|WP_037727206.1\|4016803_4017403_-\|2'-5'-RNA-ligase-family-protein	unknown	unknown	gnl\|CDD\|379265
NC_013929.1\|WP_013001304.1\|4020433_4021168_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013001309.1\|4025573_4026563_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235468
NC_013929.1\|WP_013001312.1\|4030061_4030916_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|237637

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013001312.1\|4030061_4030916_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|237637	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	0
NC_013929.1\|WP_037727188.1\|4038004_4038934_+\|DNA-directed-RNA-polymerase-sigma-70-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	2.65315e-12
NC_013929.1\|WP_013001301.1\|4017608_4018622_-\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NC_013929.1\|WP_013001315.1\|4032399_4033962_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_013929.1\|WP_037727195.1\|4027336_4028608_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|371292	pfam10901, DUF2690, Protein of unknown function (DUF2690). This bacterial family of proteins has no known function.	2.46077e-17
NC_013929.1\|WP_013001313.1\|4031177_4031756_+\|hypothetical-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	0.000240306
NC_013929.1\|WP_013001320.1\|4039051_4039936_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NC_013929.1\|WP_013001306.1\|4022838_4024023_-\|glutathionylspermidine-synthase-family-protein	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	1.52177e-178
NC_013929.1\|WP_013001305.1\|4021187_4022636_-\|glycine-hydroxymethyltransferase	gnl\|CDD\|184161	PRK13580, PRK13580, glycine hydroxymethyltransferase.	0
NC_013929.1\|WP_013001316.1\|4033958_4034588_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	3.78632e-107
NC_013929.1\|WP_037727206.1\|4016803_4017403_-\|2'-5'-RNA-ligase-family-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	4.99927e-26
NC_013929.1\|WP_078580125.1\|4018721_4019342_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	6.03688e-28
NC_013929.1\|WP_046774029.1\|4029235_4029760_-\|DUF3017-domain-containing-protein	gnl\|CDD\|378602	pfam11222, DUF3017, Protein of unknown function (DUF3017). This bacterial family of proteins with unknown function appear to be restricted to Actinobacteria.	1.50097e-18
NC_013929.1\|WP_013001309.1\|4025573_4026563_-\|malate-dehydrogenase	gnl\|CDD\|235468	PRK05442, PRK05442, malate dehydrogenase; Provisional.	0

>NC_013929.1|WP_013001309.1|4025573_4026563_-|malate-dehydrogenase
MTRTPVNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIDITDDPNVAFDGANVGLLVGARPRTKGMERGDLLEANGGIFKPQGKAINDNAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRALTQLSKKTGVPVSEIQRLTIWGNHSATQYPDIFHATVAGKNAAEVVGDEKWLAEDFIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWASMGIPSDGSYGVAEGLISSFPVTVKDGTYEIVQGLEINEFSRTRIDASVQELAEEREAVRALGLI
>NC_013929.1|WP_046774030.1|4024605_4025376_-|hypothetical-protein
MTRWDPHQGRWVDDGPGRSGPGPRVAVAVALAALLGGGIGFGVWTLSRDDDGPSRSASASSSPSTPPPSASAAGPEDGENAGPATPKQSDTDSDTAGTPDTPGYVRSDDPAGFTVEVPSGWKRTAKTPTDKPTVVTYDSPDGTRILQLFLVSEGGPAESMDLAENANYGFARLPGYRALDRSAADDDSYSEVVYRFDGEDDLGPRQVIDHRFRTADDKIYGVRLSAPESTPLDELREPVAMVTTSLCPTGATCVRG
>NC_013929.1|WP_013001307.1|4024044_4024431_-|hypothetical-protein
MGEQRRRLRSSTVVLGGMGVVAAALTSCGSDPDRRCVDRDSYDYANGYKIVADRNCNSGSGSSSYGKNSRSNSSGNRKQAGSADAAWYYDADVSRGRAEDGTFSRSEAVDRDGFGCSGDGDGSGSSGG
>NC_013929.1|WP_013001306.1|4022838_4024023_-|glutathionylspermidine-synthase-family-protein
MERRTIEPRPNWQETVEEQGLIYPLTRHPDGSLRPYWDESAYYVFSLPEVEALEEVVEELHAMCLAAAAHIVEHDRFADLGITDPRVVGLVAEAWRRRAELPSVYGRFDLRHDGTGPAKLLEYNADTPTSLVEAASPQWFWMEERFPGADQWNSLHERLVDAWKKQSRLLPPGSPLYFAHSAGDELGEDLMTVAYLKETAEQAGLDTDWISMEDIGWDHLADRFVDKKLRFIRSIFKLYPWEWLTTDRFAPHVLATLDNGGGTGTTMWIEPAWKMLLSNKALLAVLWELYPGHPNLLPAYLDGPRELAATTGYVAKPLLGREGAGVTVHAAGSAPALREEPCCYQELAPLPDFDGNHVVLGAWVVEDESAGLGIRESSGLVTDEYARFLPHVIL
>NC_013929.1|WP_013001305.1|4021187_4022636_-|glycine-hydroxymethyltransferase
MSSEPLSHESTAFRAALDVIRAVEPRVADAIGQEVGDQREMLKLIASENYASPATLLAMGNWFSDKYAEGTVGRRFYAGCRNVDTVESLAAEHARELFGARHAYVQPHSGIDANLVAFWAVLADRVEAPFLEKTGARQVNDLSEADWAELRQAFGNQRMLGMSLDAGGHLTHGFRPNISGKMFDQRSYGTDPATGLIDYEALRASARDFKPMIIVAGYSAYPRLVNFRIMREIADEVGATLMVDMAHFAGLVAGKVLTGDFDPVPHAQIVTTTTHKSLRGPRGGMVLCDDSLKDQVDRGCPMVLGGPLPHVMAAKAVALAEARRPAFQDYAQRIVDNARALAEGLTRRGATLVTGGTDNHLNLIDVTTSYGLTGRQAEAALLDSGIVTNRNAIPADPNGAWYTSGIRIGTPALTTRGLGTAEMDEVAGLIDRVLTTTEPGTTKSGAPSKAQHVLDAKVADEISRRATDLVAGFPLYPEIDLG
>NC_013929.1|WP_013001304.1|4020433_4021168_+|hypothetical-protein
MHGLRRLTAAGALLTALALLLLGAPPAEAGGPSSVLLVSPASQRTASLYETEKRYDLLERLLAPVGSALDGSREKAPDWGPEDTWGDQVGDMVTVMWLSHERPWRVDRLYLSTPDTKDVWIHTDVETTQDTAASGDGVWHKAKKSEELRALLRGFGVLRETPGGAGRGTNSAEELIGVGSDPDEKVTGARAAADAPEPAAQARWAISALVLGLVLGSGGATLLLRRAAARHGSGPPRRQELLDA
>NC_013929.1|WP_106437410.1|4019409_4020240_+|hypothetical-protein
MRRGGGADGEGRDVRLPEELRALGRALDRPGADGDETMVERVLRQILAEQVPAPVVEPPGAGERLRAVRRWAGARRRALTAALCGLLTVLVLTPPVRAAVGDWFGFGGVEVRYDPSSTPAPGAGPPGCPDPVTLAEAGRRAGFAPLVPGALGDPDAVSVTRAPKGRFVISLCWEERGSTVRLDEYAARLAPEYGKTVAGERAVEWVRLGQGSYDALWFPDPHLLRFWMTSEDGSRFTRSERTAGPTLLWVHGDAYTLRLEGVASKDRAREIAESLD
>NC_013929.1|WP_078580125.1|4018721_4019342_+|RNA-polymerase-sigma-factor
MRTREGGRIVDEAAVIARVRAGEPEAYAELVRAHTGIALRAARALGAGADAEDVVQQAFFKAYCSLGRFRDGSAFRPWLLSIVANETRNTVRTAGRQRSLADREATYAEAEPLIPASADPAVAALAIERRMALLGALEQLSEEHRLVVTYRYLLEMDEPETAAALGWPRGTVKSRLSRALRRLGRLLPEFEPGEALGKAGGGGGHG
>NC_013929.1|WP_013001301.1|4017608_4018622_-|tryptophan--tRNA-ligase
MASDRLRVLSGIQPTAGSFHLGNYLGAVRQWVALQESHDAFYMVVDLHAITIAQDPADLRANTRLAVAQLLAAGLDPERCTLFVQSHVPEHAQLAWVMNCLTGFGEASRMTQFKDKSAKQGADRASVGLFTYPILQVADILLYQANEVPVGEDQRQHIELTRDLAERFNGRFGETFTIPKPYILKETAKIYDLQDPAIKMSKSASTPKGLINLLDDPKATAKKVKSAVTDTDTVIRYDAAEKPGVSNLLSIYSTLTGAGIAELEQKYAGKGYGALKTDLAEVMVEFVTPFRERTQQYLDDPETLDSILAKGAEKARAVAAETLAQAYDRVGFLPAKH
>NC_013929.1|WP_037727206.1|4016803_4017403_-|2'-5'-RNA-ligase-family-protein
MGTVTIGVSIAVPEPHGSQLQQLRAGFGDAAAHGIPTHVTLLPPTEVEAGRLPAIETHLTEVAAAGRPFPMRLSGTGTFRPLSPVVFVRIAEGAEACTWLQKQVRDASGPVARELNFPYHPHVTVAHGIAEEAMDRAFEELAGYEAQWPCTGFALYEQGSDGVWRKLREFTFGGSVVPSQAGAPVGDSVTLPLGGQGCS
>NC_013929.1|WP_037727195.1|4027336_4028608_-|XRE-family-transcriptional-regulator
MPDELDPQVREFAGQLRRLVDRGGLSIAAVADRTGYSKTSWERYLNGRLLAPKGAIVALAEVTGTDPVHLATMWELAERAWSRSEMRHDMTMEAIRISQARAALGETGGQAIVKGGGGGRGGRSATATPGVAGPAGVTPSVPVQPRSSAGDRASRPPYGGGAASAGASRISWGATPSTSPSSPSSTASSPSPASASRAGVAGGRSSTASPVSGPGSASVPSASPLRGAGGAAVAGGASAPSGVFGPPPGGGRPDAGDARPKRRVPMFIAGAVGGLVLIAGAFYLINGGGKDRADDKPPSSASTSAGTNPDLPAGVKCSGKDCEGKDPETMGCIGDLVRTADEATVGTARVEVRYSKTCQAAWARITGAAQGDEVQVAAGMTRQTAAIEEAGDNIAYTLMINVEDAGDATACATLASGQKGCTG
>NC_013929.1|WP_046774029.1|4029235_4029760_-|DUF3017-domain-containing-protein
MTKTAETTGAAGTAEAAGTAGAVDEIEVRDHISVPDAEGRPVRGTRRFPMFTRDTARPEGGGRAAPREAPAPVRQWPILAVLSTVALGLLLTALDVFRAGTILIGAALLGGAVLRWAVRDVGMLAVRSRFTDMATYIFLGTAIVLLALMAQPKPLLEIPFLKDTLHFTVGDEAG
>NC_013929.1|WP_013001312.1|4030061_4030916_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MSAQILDGKATAAAIKSDLTARVAVLKEKGVTPGLGTILVGEDPGSQKYVAGKHRDCAQVGIASIQRELPATATQEEIEAVVRELNEDPACTGYIVQLPLPKGIDENRILELMDPDKDADGLHPMNLGRLVLNEPAPLPCTPNGVLTLLRQYGVEIKGAEVVVVGRGVTIGRPMPLLLTRRSENATVTQCHTGTRDLAAHLRKADIIVAAAGSAHLIRPEDVKPGAAVLDVGVSRSAEGKIVGDVHPGVAEVAGWISPNPGGVGPMTRAQLLVNVVEAAERSVG
>NC_013929.1|WP_013001313.1|4031177_4031756_+|hypothetical-protein
MSFGDPNNPYGQPQQQPPAPGYGYPQQTPPQQPGYGYPAAPPVSQGYGGYPNAPETMPSSVNAARIMLWVIVGLQVVGVLLYAIAATVVSAASDSAEDPALAEALGNIPTGQMVAIAIFAAAWLGYAIMMAVKFKSGGNGVRVATLVFGIITAILGVFPFVLIGLVHVVLGILIAVFVGNANGKAWFNRPRY
>NC_013929.1|WP_037727651.1|4031840_4032158_-|hypothetical-protein
MLAVALGTGTSGTAAASATGDEAVVSCLRGYVCLQPLLGSQPFMVREGDRAAYSPALRVTAVVNATNTPYCIAGSLNYPLGPGQTRTYDHSVSLVSPAGGGFCAL
>NC_013929.1|WP_013001315.1|4032399_4033962_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTADSNKRPLRRALVSVYDKTGLEELARGLHEAGVALVSTGSTAAKIAAAGVPVTKVEELTGFPECLDGRVKTLHPKVHAGILADLRLEDHRNQLAELGVEPFDLVVVNLYPFRETVASGATPDECVEQIDIGGPSMVRAAAKNHPSVAVVTSPARYADVLAAVQHGGFDLATRKRLAAEAFQHTAAYDVAVASWFASSYAPADDSQFPDFLGATWERAHTLRYGENPHQPAALYVSGTGGLAEAEQLHGKEMSYNNYTDTDAARRAAYDHDAPAVAIIKHANPCGIAVGTDVAEAHRKAHACDPLSAFGGVIAVNRPVSKEMAEQVAEIFTEVIVAPDYEDGALEALAKKKNIRVLKAPGAPAAPIELKPVDGGALLQVTDRLQADGDDPAHWTLATGDALSADELAELAFAWRACRAVKSNAILLAKDGASVGVGMGQVNRVDSAKLAVERAGAERARGAYAASDAFFPFPDGLEILTAAGVRAVVQPGGSVRDEQVVEAARKAGVTMYFTGTRHFFH
>NC_013929.1|WP_013001316.1|4033958_4034588_-|phosphoribosylglycinamide-formyltransferase
MAAKPVAKRLVVLVSGSGTNLQALLDAIATAGVEAYGAEIVAVGADRGAIEGLARAERAGLPTFVCRVKDHATRDEWDAALADAVAAYEPDLVVSAGFMKIVGKRFLARFGGRFVNTHPALLPSFPGAHGVRDALAYGARVTGCTVHFVDDGVDTGPIIAQGVVEVRDEDDESALHERIKEVERRLLVDVVGRLARNGYRIEGRKVVIQ
>NC_013929.1|WP_013001317.1|4035063_4035840_+|membrane-protein
MPDRSFRLSSLLLRERSSSPTPPRESEDTDEQSGQPGRGQGAGASDDNPFAPPPEGTPDRPWQPRRPDGRDTDDGTGRGGGHSPWGSQWSDRQPGRSSGGPFGQRPGGQGGPGQGPEGGPGGGLRWDPTDPSQRRARYSLLCGMWAFFFALFAWPYVALLLGSLAVYWAVSALRAKPAAPDPDRPATPEPSGRPQRTAAISGLVTSTIALAIVAVTFTAQFVYRDYYTCVNDSLTTTSAQACKDLLPEGPLREVLGAQ
>NC_013929.1|WP_037727188.1|4038004_4038934_+|DNA-directed-RNA-polymerase-sigma-70-factor
MTRPGTRTPGGPPGRDGTEWYQQQPLGADGPPPDAGLPAPAPPRLTPGQAFDALYAYCAPALVQQTYLLTGQRRLAREAVERAFQLAWHRWPEVAVDRDPAGWVRAAAHEYALSPWHRLRPRSRQHLEPPPADPTDRALLSALLDLPPPYRRTLLLYDGVGLDLPDTAAETESSTPAAAGRLLYARARVTERLPKRVAADDLGRLLAELPSGVRPGPVRPPAIRARADLRARRWIHAAIAFTTLLLTTTALTLYTAPDHYEAPVPPGVPVQGVPPRAAPGPLSAPEQKLRAKLRADSAAGPERLHPEAH
>NC_013929.1|WP_013001320.1|4039051_4039936_-|succinate--CoA-ligase-subunit-alpha
MAIFLNKESKVIVQGMTGATGMKHTKLMLADGTNIVGGVNPRKAGTTVDVDGTEIPVFGTVAEAIEKTGANVSVLFVPPAFAKSAVVEAIDAEIPLAVVITEGIAVHDSAAFYAYAGSKGNKTRIIGPNCPGLITPGQSNAGIIPGDITKPGRIGLVSKSGTLTYQMMYELRDIGFSSAVGIGGDPVIGTTHIDALAAFEADPDTDLIVMIGEIGGDAEERAADYIKANVKKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKKEALEAAGVKVGKTPTETAKLAREILGG

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Crispr_ID: NC_013929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_2

4329215-4329302

Orphan

Consensus_repeat	Method
GGCGATCTGGATCAAGAGCAGCCACAGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_2

>merge|NC_013929|2|4329215-4329302|CRISPRCasFinder
GGCGATCTGGATCAAGAGCAGCCACAGCGGCAACGACGGCGGCGACTGCCTGGAAATGGCGACCTGGATCAAGAGCAGCCACAGCGGC

>NC_013929|2|2|4329215-4329302|CRISPRCasFinder
GGCGATCTGGATCAAGAGCAGCCACAGCGGC	AACGACGGCGGCGACTGCCTGGAAAT
GGCGACCTGGATCAAGAGCAGCCACAGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013001569.1\|4334539_4336297_-\|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl\|CDD\|377471
NC_013929.1\|WP_060889025.1\|4326249_4327023_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_041669352.1\|4331549_4333190_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|312032
NC_013929.1\|WP_013001558.1\|4323892_4324894_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NC_013929.1\|WP_013001568.1\|4333415_4334543_-\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|274447
NC_013929.1\|WP_013001575.1\|4341087_4342407_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NC_013929.1\|WP_013001557.1\|4323450_4323936_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NC_013929.1\|WP_013001560.1\|4325823_4326210_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_013929.1\|WP_049875735.1\|4337776_4339054_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200598
NC_013929.1\|WP_013001556.1\|4322973_4323402_+\|gas-vesicle-protein-K	unknown	unknown	gnl\|CDD\|377462
NC_013929.1\|WP_013001574.1\|4340416_4341091_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_013929.1\|WP_148274211.1\|4339766_4340297_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_041669354.1\|4337111_4337711_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_013929.1\|WP_013001554.1\|4322172_4322697_+\|gas-vesicle-protein	unknown	unknown	gnl\|CDD\|376379
NC_013929.1\|WP_106437415.1\|4327608_4327992_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_037723032.1\|4336321_4337101_-\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NC_013929.1\|WP_041669350.1\|4325018_4325831_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_041670702.1\|4322711_4322999_+\|gas-vesicle-protein	unknown	unknown	gnl\|CDD\|376379
NC_013929.1\|WP_013001564.1\|4328033_4328243_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_107285594.1\|4329522_4331490_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013001569.1\|4334539_4336297_-\|cytochrome-c-biogenesis-protein-ResB	gnl\|CDD\|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	5.92409e-176
NC_013929.1\|WP_041669352.1\|4331549_4333190_-\|alpha/beta-hydrolase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	7.62036e-20
NC_013929.1\|WP_013001558.1\|4323892_4324894_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.87903e-54
NC_013929.1\|WP_013001568.1\|4333415_4334543_-\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.33725e-99
NC_013929.1\|WP_013001557.1\|4323450_4323936_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	2.61635e-40
NC_013929.1\|WP_013001560.1\|4325823_4326210_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	1.62552e-27
NC_013929.1\|WP_013001556.1\|4322973_4323402_+\|gas-vesicle-protein-K	gnl\|CDD\|377462	pfam05121, GvpK, Gas vesicle protein K. These proteins are involved in the formation of gas vesicles.	9.37178e-37
NC_013929.1\|WP_013001574.1\|4340416_4341091_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.38498e-41
NC_013929.1\|WP_041669354.1\|4337111_4337711_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	7.90295e-42
NC_013929.1\|WP_013001554.1\|4322172_4322697_+\|gas-vesicle-protein	gnl\|CDD\|376379	pfam00741, Gas_vesicle, Gas vesicle protein.	4.15302e-16
NC_013929.1\|WP_037723032.1\|4336321_4337101_-\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	3.54091e-40
NC_013929.1\|WP_013001575.1\|4341087_4342407_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NC_013929.1\|WP_041670702.1\|4322711_4322999_+\|gas-vesicle-protein	gnl\|CDD\|376379	pfam00741, Gas_vesicle, Gas vesicle protein.	4.08619e-10
NC_013929.1\|WP_049875735.1\|4337776_4339054_-\|hypothetical-protein	gnl\|CDD\|200598	cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins. The family includes many uncharacterized bacterial hypothetical proteins that show high sequence similarity to insect chitin deacetylase-like proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues.	4.80981e-113

>NC_013929.1|WP_013001564.1|4328033_4328243_-|hypothetical-protein
MEPEGQLVYDPRTRRVGEYRDRVGPYAMLRPVGGGREWEADPGTLRPATAAERIGAQVRAANQRTKRRV
>NC_013929.1|WP_106437415.1|4327608_4327992_-|hypothetical-protein
MPGCAACAELDVRRGEARARYDRSAETDANVLLRHHQRREHTGGGRTRRVFRYVPYVIAQDATAEPEYEARCVSGDETECGAESGVRSDAAAVEEWQRRHTQETRHLRYRRSFGDYSVLEPLEEVPL
>NC_013929.1|WP_060889025.1|4326249_4327023_-|hypothetical-protein
MVRRGLLCEAVLIVGCRGVQVGDHNEQYNQYTYRLRTPHLDFAPVLRRADVRERLAALALDPENPDKRAAVMGKLGARTWSVRRDAVELRAVRREDGGRSVPRASAVPPPVGAGRGQSFVFIRHCRDVQVGEHRRQYNDFAYVCPRPRVDERQLLRESPGLREALVDVVTGRATADALSDEIHRAFRAASFAPPPHPPQRSGTLQGYDGVTVGRGSRAIDEARLTAELNGRRLVRDMRREADVVARRRRMLGRGEGL
>NC_013929.1|WP_013001560.1|4325823_4326210_+|GntR-family-transcriptional-regulator
MSEAAVRVDTTSQVPPYEQIRAQLAALIVTGRLAEGDRLPTVRQLATDLGLAPGTVARAYRELEAGALIRTRRGAGTRVAAPPTGPVRPHTVQLATLARDFTSAARALGADTEAIVAAVREALGPDRP
>NC_013929.1|WP_041669350.1|4325018_4325831_+|hypothetical-protein
MIRGDLRMLDTAPFQHRLLDHADHYARWSGLAIGLVAAQALSTLGEVEFEQRVVFCLTAFGLCAVAGVLLADALTLRPQEAVRTASLAPRLVRDHVPPHMGPLIALQGISLAVLLVITAATASVDPARILSTGKVLTLTCNGMRATAGPWPGLYYTLPMFGALAIATPTCVWALRRIAHGPGGEQQRRDRAWAVTGAWGLLVSSQQLYAVLMVSLALTETGCAGVLGVLTFWVFYPLALLNLFTVVWSLVTVVAPRAVDDEAAEGHFDDE
>NC_013929.1|WP_013001558.1|4323892_4324894_+|isopenicillin-N-synthase-family-oxygenase
MTPATSATAAAGAGRPRIPTIDLRPWRDGGPGARARIARTVDEALQSAGFLLVTGHGVDPALRARVREAARAFFVLPAETKRAYEVKVGGRGWLGPGAEANGYAEGTETPPDLKESLTFATHEPFDDPVVNAEWYAPNVWPAEVPHLRALCEEYLARMGELENLLLTLLGEALGLEPDFFSRHMSHPTYGFNINWYPGTDVIGDPVPGQFRIGPHTDFGTVTILDRQAGKGGLQVFTDEGGWEDAPYDPAAFTVNVGDLLARWTGDRWRSGRHRVLPPPADEPTEELMSLVYFGECTPGTIVESVPAPVGRVAHPPVDSHVYLRAQLDSITVG
>NC_013929.1|WP_013001557.1|4323450_4323936_+|nucleoside-deaminase
MDQAQARAWLATAVEEARTGLAEGGIPIGAALYGPDGTLLGRGHNRRVQDGDPSTHAETAAFRAAGRQRTYRGTTMVTTLSPCWYCSGLVRQFGISRVVVGEATTFHGGHDWLAEHGVEIVLLDDPECVALMRDFVRQRPALWNEDIGDPSDIGDGSGRGR
>NC_013929.1|WP_013001556.1|4322973_4323402_+|gas-vesicle-protein-K
MTVPDPRSDGGPHGDRLREVADAASRAFSLLPARPEDLPPPPPAGRPGPGAVARRLRTDPDTVERDLVRLVLTIVELLRQLMERQALHRVDRGGLTEDQEERLGMTLMVLHDRMTELCDRYGLTLDDLNLDLGPLGPLLPPP
>NC_013929.1|WP_041670702.1|4322711_4322999_+|gas-vesicle-protein
MYGDPDGPAVYADDDRPISGRQVALIDLLDRLLSGGVVLTGDLVLSVADIDLVRVSLRAVIVAVREQMDEQWALDLPGPAPLEGGGTDDGPGPPV
>NC_013929.1|WP_013001554.1|4322172_4322697_+|gas-vesicle-protein
MTPSDSPVPSPTRSPYPYGGGQGSSANLADILERVLDKGIVIVGDIKINLLDIELLTIKLRLLVASVDKAKEIGIDWWEHDPALSSRASRSDGRRSLADENERLRAEVRELRERVEAPPELPARKPRPAGSAERRATGRKASQASRTESRPAEPPRKRRRPVREEADDTDEERS
>NC_013929.1|WP_107285594.1|4329522_4331490_+|hypothetical-protein
MTTATATPPTHALSGIPTAYGHSEELPFIVLAGARGLGKSTALRELRAAYRSRTPVALIDGEETRFDRPPPGRPPETWSPVYEALSAVAEQLGEPVAGAGRISFPRLACGLLAVAAGGWGDRGLPRICAEAERILLLSDTGGWLAGRWVGKAVARLVSSLSAQGRPAVEAIIEAALEAFSEGMSSSHRRLRRGAVWYRDHPHAAGSPKRGLVLLSRHFRAGGDARTHAEHHLVRALLADLDDAYAGVVPRPQRAGRPVILLDNVQEAAGRRLLESVLRDRADGRADQVAFFAGLRGQGHPALRHAARRTLPEATGSGGWTPGVTPSSHALLIPMPALSPENTLHVIGAACAGVPVPPRLPYATHRLTGGSPLGTALIAESARQNLPRGVTTLTGLLSAAMVVHDEDEDHGERPTYRVLLDRLLPNERHLDALAVLAAAHDRDSALALAGSRLPDGFDESAVLALEDRLAREGHAPTPGHFVGDPFLRTLLLLGLRDRDPDHKRSRSVHRTLADHYGPARAAHRAHHELALGNADLAVAHLCDTFHGTDLRTWLTSLAFIASAPHDDGPNGDGPDDRGAVALGRPDPALHARVRRVLHAVWQLTDPLVLPDPEVAERLGRELEQLSAGRPAADVLLRRASRDWPDDALAGRPLRVG
>NC_013929.1|WP_041669352.1|4331549_4333190_-|alpha/beta-hydrolase
MPLLAVSVTATLVPALATSTATAAPAAFPAATSLSTASASTAAGALDPYVKQKPKWKRCDADAPAKFKCATIKVPLDYRAPGGKRIDLAISRLRSTAPDKRHGVLFSNPGGPGGSGLFMPLGVQEILPKAAQRKYDLIGFDPRGVGRSSPVSCGLKPKEEDWLRPYKKKTFAKDVAWARTVADKCEKKAGATLRHITTRNTARDMDLIRAILGEKKISYLGYSYGTYLGAVYTQLFPGRADRFVLDSAVEPARAWRGMIQWWAEGAEPAFDRWTEWAAARSATYGLGDTPKKVDRTFWDLVAQAGEKPIEVDGQAVTGDDIRSGMRGAVFSPEFASDIMMELKKAAAGQPASARKLAVFAGSERSRTAGAVAAAKVPSDNGMASFWAVVCGDNSAAWSRDPESYRRDAIADKRRYPLFGDFASSIKPCAFWDKSAERATKVNNKVGSLVVQNEWDSQTPLPSGQALHADLKGSKMVTVHGGEGHGVYPSGNACSDGAVNGYLLTGKLPAKDVTCEATTGSNEEARKNRQRDMLPGSPLPERAPDRF
>NC_013929.1|WP_013001568.1|4333415_4334543_-|c-type-cytochrome-biogenesis-protein-CcsB
MTLAAATNENLANISNTLIYSAMAVYTLAFFAYIAEWLFGSRSKVGRTAAALTAGTKDAKDAKKADAPAVTVQSAGGTSVLERPKVVVRAAAGARDVPDGPGAHGGDEQGDLYGRIAVSLTVLAFLVEFGGVLTRALSVQRAPWGNMYEFNITFSTVAVGVYLALLVLKKNVRWLGLPLITTVLLDLGLAVTVLYTASDQLVPALHSYWLYIHVSTAIFCGAVFYVGAVGTILYLFKDSYESKLAAGGRPGRFATSVMERLPASASLDKFSYRVNAAVFPLWTFTIIAGAIWAGDAWGRYWGWDPKETWSFITWVAYACYLHARATAGWKGRKAAYIAIVAFACWLFNYYGVNIFVSGKHSYADVGLAALRSVGA
>NC_013929.1|WP_013001569.1|4334539_4336297_-|cytochrome-c-biogenesis-protein-ResB
MTTTDSGNRENAARPASGTPDDNDLGAAGSQLSTAPEEDAPHLPSLGVIGWARWFWRQLTSMRVALLLLFMLSLAAIPGSLIPQSGQDESRVADFMQRHDTLGPLYEKLGLFHVYSSVWFSAIYILLFVSLIGCIVPRTGQFVGQLRGRPPGAPRRLTRLPAYATWRTQATPEQVREAALQALKKRRFRAHVAGDAVAAEKGYLREAGNLAFHIALIVMLVAFAWGQLYRSEGNKLIVEGDGFSNVLPLYDDFKSGNLFTADDLNPFSFDLKSFRATYETSGPNKGTPRVFEAAVDYAVGADGKQRSTRIEVNKPLEIGDSKVYLVSHGYAPVLTIKDGRGKVVFQDAAPLLPLDSNVTSTGAIKVMDGYTDAAGKWDQLGIQAFFLPTYGGKNTAVVSQYPALLNPVLNLEPYHGDLRVDGGIPQSVYQLDKSKLKGFKDSKGAQVRENLKIGESMTLPNGAGTITFDGVKEWAGFQITQQPGSGWALGGAITAILGLAGSLFIQRRRVWVRAVAGPDGVTVVEMAGLGRSESAKVPEELGDLAAAVHDKAPTAAETGPDAATGPEHHTTPQPPAVPSEGAEQQ
>NC_013929.1|WP_037723032.1|4336321_4337101_-|cytochrome-c-biogenesis-protein-CcdA
MSVTAAALTTTATEMNETVFNGALLLALPIAVLGGLVSFFSPCVLPLVPGYLSYVTGVGGTDLVDARRGRMVAGAGLFVLGFTFVFVSGGALFGFFGQTLLEHQEILNKVLGGLMIAMGLFFMGLMPWFTQREFRFHTRPATGLVGAPILGALFGIGWVPCIGPTLTSVNALALEQASAGRGALLMVAYCLGLGLPFMLAAVAFRKALGAFAWVKRHYVWVLRIGGGMMITIGLLMLTGAWDRIIQEMQVWSAGFTPGI
>NC_013929.1|WP_041669354.1|4337111_4337711_-|TlpA-family-protein-disulfide-reductase
MSVRTSRSRAALLSAGAAALVLTLSACAGGGIEGGGGQTGFITGSDGIATVKKGDRDTAPDLSGKTIDGDRLDLSAYKGKIIVLNVWGSWCAPCRAEAPNLVKVSQDLAGRGVQFVGINTRDTSTRPALAFEEQYKVTYPSLYDPTGKLLLRFEKGSLNPQLIPSTLVIDREGKLAVRTQQPLSEEKLRKMLKPILAEK
>NC_013929.1|WP_049875735.1|4337776_4339054_-|hypothetical-protein
MREISRRGMLGLGVGAGAAAGLGLTGCGTGLGGKPDEAGGSGGDGKKPGKKHRPGKKAKPLGDGSTSYTGKQPNQPGRPRPLEPGEKPPQFVVFSWDGAGDVGNGLFERFLKAGRDHDAHMTFFLSGIYLLPESKKRVYLPPNNAPGASDIGYLTDEHIKSTLGHVRTAWLDGHEMGTHFNGHFCGGSGSVGNWTPKQWRSEIEQAKSFVKEWRTNSGWTDVESLPFDYDKELIGGRTPCLLGQENLLPTARELGWRYDSSSPGGLQMWPRKKQGIWDLPLQSVPFPGRSFEVLSMDYNIMFNQSQNSTQAPPANYPAYRKQATGAYVAGFQRAYETNRAPLFIGNHFEEWNGGVYMDAVEEALKHIARAKEKAKDGEIRIVSFRQFVDWMDVQTPEVLAKLQTLGVGQQPTGGWKEFLGAGSAA
>NC_013929.1|WP_148274211.1|4339766_4340297_+|hypothetical-protein
MSTAALLAAIPAANASSPTDAAASARAGTTGRSSVSRSFTLPKGTTRATLSLGASKAEVVKAPQDTITCVLTVYSPWFTFVGGTPRIATQAETTCSSWVTSLSIAAELTRNGATASVGDNQNNFSSSISVDTAAPCAEGSWVAHADGDIIYPPLFWPPSADLSVQSRALPVSICRN
>NC_013929.1|WP_013001574.1|4340416_4341091_-|histidine-phosphatase-family-protein
MSDITVVHLMRHGEVANPDGILYGRLGGYHLSDLGRRMADRVAEHLASRDVTHVVASPLERAQETATPIAKAHGLDLATDGRLIEADNVFQGKTFGVGDGALKRPENWKHLVNPFKPSWGEPYVDQVVRMMGALDAAKDAARGHEAVLVSHQLPIWIVRSYVERRRLWHDPRRRQCTLASLTTFTYQGDKIVSVGYSEPARDLVPAHLLAGAKPVKGKGKAFGA
>NC_013929.1|WP_013001575.1|4341087_4342407_-|glutamate-1-semialdehyde-2,1-aminomutase
MACVSYPYEAPVSQTLFSRAAAVTPGGVNSPVRAFRAVGGTPRFMVSGTGPYLTDADGREYVDLVCSWGPMILGHARPEVIAAVTEAVSRGTSFGTPGEGEVALAEEMVDRVGPLEQVRLVSSGTEATMSAIRLARGFTGRGKVVKFAGCYHGHVDSLLAAAGSGVATFALPDTPGVTGAQAGDTIVLPYNDLDAVRAAFAAHPGEIACVITEASPGNMGVVPPLPGFNQGLRDVCAEHGALFVSDEVMTGFRTSRAGWFGVDGVVPDLMTFGKVMGGGFPAAAFGGRADVMAHLAPAGPVYQAGTLSGNPVATAAGLAQLRLLDEAAYDTVNAVSAQVQGLVTEALTKEGVAHTLQNASNMFSVFFTDTPVRNYEEAKAQESFRFNAFFHSMLSQGVYLPPSSFESWFVSTAHDERAVQRIADALPAAARAAAEASAA

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Crispr_ID: NC_013929_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_3

5160586-5160677

Orphan

Consensus_repeat	Method
GATGTTTCACGTGAAACATCGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_3

>merge|NC_013929|3|5160586-5160677|CRISPRCasFinder
GATGTTTCACGTGAAACATCGCACCGCGCCGCTGTCCGTACCTACGGGGCCGCCGTTACTGAGGGGGTGATGTTTCACGTGAAACATCGACG

>NC_013929|3|3|5160586-5160677|CRISPRCasFinder
GATGTTTCACGTGAAACATCGCAC	CGCGCCGCTGTCCGTACCTACGGGGCCGCCGTTACTGAGGGGGT
GATGTTTCACGTGAAACATCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013002265.1\|5168738_5169770_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|376473
NC_013929.1\|WP_013002261.1\|5162055_5163138_-\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NC_013929.1\|WP_041669467.1\|5147072_5148170_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_013929.1\|WP_013002253.1\|5149538_5150510_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_013929.1\|WP_013002267.1\|5171181_5171496_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002258.1\|5156454_5158860_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002268.1\|5172123_5172681_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
NC_013929.1\|WP_005482961.1\|5149164_5149497_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_013929.1\|WP_003949403.1\|5172764_5173001_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_013929.1\|WP_013002266.1\|5169835_5170957_-\|peptidoglycan-bridge-formation-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|367067
NC_013929.1\|WP_173402895.1\|5164236_5166906_+\|transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223815
NC_013929.1\|WP_013002257.1\|5154175_5156407_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|273763
NC_013929.1\|WP_013002259.1\|5159094_5160543_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NC_013929.1\|WP_013002254.1\|5150682_5151597_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274904
NC_013929.1\|WP_005482942.1\|5171757_5172048_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NC_013929.1\|WP_037726047.1\|5152329_5154057_-\|protein-kinase-family-protein	unknown	unknown	gnl\|CDD\|270875
NC_013929.1\|WP_013002262.1\|5163182_5163863_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_013929.1\|WP_013002264.1\|5167090_5168599_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NC_013929.1\|WP_013002252.1\|5148494_5149112_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NC_013929.1\|WP_013002255.1\|5151593_5152304_-\|RNA-polymerase-sigma-factor-SigM	unknown	unknown	gnl\|CDD\|236604

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013002265.1\|5168738_5169770_-\|alanine-racemase	gnl\|CDD\|376473	pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.	2.10326e-09
NC_013929.1\|WP_013002261.1\|5162055_5163138_-\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NC_013929.1\|WP_041669467.1\|5147072_5148170_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	8.85796e-71
NC_013929.1\|WP_013002253.1\|5149538_5150510_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	8.88455e-157
NC_013929.1\|WP_013002264.1\|5167090_5168599_+\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	4.67086e-43
NC_013929.1\|WP_013002268.1\|5172123_5172681_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	1.64591e-89
NC_013929.1\|WP_005482961.1\|5149164_5149497_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.79931e-46
NC_013929.1\|WP_003949403.1\|5172764_5173001_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	9.24137e-38
NC_013929.1\|WP_013002266.1\|5169835_5170957_-\|peptidoglycan-bridge-formation-glycyltransferase-FemX	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	9.35139e-30
NC_013929.1\|WP_173402895.1\|5164236_5166906_+\|transglycosylase-domain-containing-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	9.54689e-131
NC_013929.1\|WP_013002257.1\|5154175_5156407_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|273763	TIGR01695, Putative_lipid_II_flippase_MurJ, murein biosynthesis integral membrane protein MurJ. This model represents MurJ (previously MviN), a family of integral membrane proteins predicted to have ten or more transmembrane regions. Members have been suggested to act as a lipid II flippase, translocated a precursor of murein. However, it appears FtsW has that activity. Flippase activity for MurJ has not been shown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	8.70915e-157
NC_013929.1\|WP_013002259.1\|5159094_5160543_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NC_013929.1\|WP_013002254.1\|5150682_5151597_-\|hypothetical-protein	gnl\|CDD\|274904	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor. Members of this family are the anti-sigma-R factor RsrA, which contains a CXXC motif as a thiol-disulphide redox switch. It interacts with sigma-R. It regulates and is regulated by the mycothiol system, which occurs in many actinomycetes. [Transcription, Transcription factors].	3.9094e-05
NC_013929.1\|WP_005482942.1\|5171757_5172048_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	8.20181e-40
NC_013929.1\|WP_037726047.1\|5152329_5154057_-\|protein-kinase-family-protein	gnl\|CDD\|270875	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This family is composed of the mycobacterial protein MviN and similar proteins. MviN is an integral membrane protein that is essential for growth and is required for cell wall integrity and peptidogylcan (PG) biosynthesis. It comprises of 14 predicted transmembrane (TM) helices at the N-terminus, followed by an intracellular pseudokinase domain linked through a single TM helix to a carbohydrate binding extracellular domain. Phosphorylation of the MviN pseudokinase domain by the PG-sensitive serine/threonine protein kinase PknB recruits a forkhead associated (FHA) domain protein FhaA, which modulates local PG synthesis at cell poles and the septum. The MviN pseudokinase forms a canonical receptor kinase dimer.	9.19907e-61
NC_013929.1\|WP_013002255.1\|5151593_5152304_-\|RNA-polymerase-sigma-factor-SigM	gnl\|CDD\|236604	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed.	6.96881e-97
NC_013929.1\|WP_013002252.1\|5148494_5149112_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	0.000861732
NC_013929.1\|WP_013002262.1\|5163182_5163863_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	7.95661e-20

>NC_013929.1|WP_013002259.1|5159094_5160543_+|CCA-tRNA-nucleotidyltransferase
MPNANEDISALSQVQRRAVSELLRVSPVADDLARRFQQAGFSLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADALWEVGIAFGTVGAQKDGYQIEVTTYRSEAYDRTSRKPEVSYGDSIEEDLVRRDFTVNAMAVALPEKEFIDPHGGLEDLSARVLRTPGTPEDSFSDDPLRMMRAARFAAQLGFEVAPEVVSAMTAMAGRLEIVSTERVRDELNKLILSAHPREGLSLLVETGLAEHVLPELPALRLERDEHHRHKDVYDHTLIVLEQAIALEDAGPDLTLRLAALLHDIGKPRTRRFEQDGRVSFHHHEVVGAKMTKKRMTALKYSNELVRDVSRLVELHLRFHGYGMGEWTDSAVRRYVRDAGPLLDRLHKLTRSDCTTRNKRKANALSRAYDGLEDRIAQLQEQEELDAIRPDLDGNQIMEILGVGPGPAIGQAYKFLLELRLENGPMPQDEAVTALKEWWARTPGVS
>NC_013929.1|WP_013002258.1|5156454_5158860_-|hypothetical-protein
MAEAADFQGTSPSPARRWLLRTGALFAGAPLLAGLFQVPAAPAAQASPKASLAEATGSRTVEVSVDSLSPSVPTDGDTVTVSGTVTNKGKQTVTEAHVGLRVASTAVTGRSAIDEAARRSGFDQFTDGTEVGGKYEEKFPALASGVAQPFTISVPVKELDLGSDGVYQLGVSLSGRTASAQYDQVLGIQRTFLPWQPDEAGSRTKTTYLWPLISTTHLTAETGPGEQQTPVFLNDDLAKEISAGGRLEQMLTLGKDLDITWVIDPDLLASVVAMTGNYRVQSRGTTVAGRNQAAAKAWLAELETAVQGEEVVALPFADPDLAALAHNGRTVAGSLSRLKGATDVASDTVENILRVVPETDFAWPVNGAVDPSVVKVAISGGADKVIARSDSLQESSGLSYTPNAARPIGGGTTAVVADARLSTAFQGDMTKAESSTLAVQRFLAQSLVTDLQNNKQRSIVIAPQRMPTASQAQTMAQALTALQGGNWSQPQGLSEAAAAKPDPRASTRIPSASAYPRSLRKQALPKSAFEEIQGTQADLDRFKVILTDPSRVVTPFGRTMDREMSTSWRGRSMDAAVYRNSVQSYLNSLTGQVRLIEKSETKLSGRSATIPVTVQNNLVQSVDLTLRLESMAPKRLKIGDKASGEQSVDISGGHSESVKFTTNAEANGKADVVAQLYTADGEKYGDEVRFTVNVTEITPTVMLVIAGGVLLLVLAGFRMYTQRKRAAARLEGEEAPTDDDSPEEAPTDEEANTEAASVVHTAEEDSPAKSGTDEPEHASDPAPDTAPESADPSGTGERVDR
>NC_013929.1|WP_013002257.1|5154175_5156407_-|murein-biosynthesis-integral-membrane-protein-MurJ
MNAPYDGDRGQGAADSGYPDGPLPGPGQVPPQPPADMYLQDAYDQDPYRARDLSAQDPVAEALYDRAAHPPPAPGTYQPQQPLYAQPSSPQYAPDPRVWAQTPAPEPEGPTRHLPYGDDARTTQFVGVDDLVTQAGEERHEPDAFAHLFRDQQQSGPTPVGQPSVPGPAPAPSPGPGRPAYQKPAPAPTPASTPAPAPKKGGRASGLLKSSAVMAAGTMVSRLTGFIRSAMIVSALGLALLGDAFQVAYQLPTMIYILTVGGGLNSVFVPQLVRAMKDDDDGGEAYANRLLTLVMVVLGLLTALAMFAAPLLVRALSVGVADNAAANETAVTFTRYFLPSIFFMGVHVVMGQILNARGRFGAMMWTPVLNNVVIIVTLGAFLWVYGSAADSHMNVDNIPAEGVRLLGVGILLGLVVQALAMIPYLRETGFRLRLRFDWKGHGLGKAAMLAKWTILFVLANQAGALVVTQLATAAGIGSPSKGTGFASYANAQLIWGLPQAIITVSLMAALLPRISRSAAEDDTGAVRDDISQGLRTTAVAIVPIAFGFLALGIPMCTLIFGSSGTGAATNMGFMLMAFGLGLIPYSVQYVVLRAFYAYEDTRTPFYNTVIVAAVNASASAVCFFVIPARWAVVGMAASYGLAYMIGVGIAWRRLKKRLGGDLDGSRVMRTYARLSIASLPAALLSGAACYGISRTLGQGVGGSMLALAGGGIVLLGVFYVAARRMRIEELNSMVGMVRGRLGR
>NC_013929.1|WP_037726047.1|5152329_5154057_-|protein-kinase-family-protein
MAERSTAAVDVADNSGDEPLTAQADQSTADGEAQNRERDTESSASEEAQGHGDTGNPSQTTPPELHSGHKLARRYRLEECVTRLDGFSSWRAVDEKLRRAVGVHVLPADHARARSVLAAARSSALLGDPRFVQVLDAVEENDLVYVVHEWLPDATELTALLASGPLEPHDAYQMVTQVSHAMAAAHREGLAHLRLNPSAVLRSASGQWRIRGLAVNAALRGISSDTPQRTDTEAIGALLYAALTQRWPYENDAHGLSGLPKGVGLIAPDQVRAGVHRGLSELSMRALVNDGATASRHEAPCTTPEELVKAVGEMPRIRPPEPAFTAPPDYQHTTYQQGTYGRQAPHPGLTQPIQTPPPPLQSRTGKVLKWAVSALLIAALGLGSWQLADTLMNSRGQSGEPDTSQSTDGNDKGTDKAKPVTTLGIKGAAEYYPDGKPQHAGDARLTYDNSSSTYWRTYSYNDGPTLAPFKQGVGIVYDLGSVKEVSAASIGLYYTGDHTTATLYAADSLSSSAPLSSMTKIATNRTSGTDLKISAKKAVKTRYVLVWLTDVPYANRDQFSGSGYKQAITDVKFMG
>NC_013929.1|WP_013002255.1|5151593_5152304_-|RNA-polymerase-sigma-factor-SigM
MAHSADHSDVSDQDLLARHVAGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQAAVTTWLHRITVNACLDRARKAASRKTSPVDDTERLEQLLEPHESASAPAERNDLHRQLLEALGTLPKDQRAALVLVDMQGYPVAEAARILDVPTGTVKSRCARGRARLLPLLTHLRADAEGGGRKSDRGRNRTQGTSVPPAAGPHDAGPSDSAAVKGGGGRA
>NC_013929.1|WP_013002254.1|5150682_5151597_-|hypothetical-protein
MTSTTDTAGHPDVAEISDLSEGLLPASRTTHLRQHLDECSLCADVYDSLEEIRGLLGTLPGPPRMPDDVAGRIDAALAAEALLNAGAQRQEATAEPASAGVSRTGREEDTTHVSRETSPTVDRPAGHPRASTGPGRTGKRRPKRRTTVIGAVFAIVALGFGAVLVQSGGKSDGPGPETATAASTTFSGVKLEKRVQALLGENNSNGTKRSPSKESFGTATAPDKNRNTVLKAEVPGCIAKGIGDVTGAIASEPGTYRGADAYLVLLPDGADDSRVTAYVVDASCVGRATESSGDVLLKQSYPRS
>NC_013929.1|WP_013002253.1|5149538_5150510_-|thioredoxin-disulfide-reductase
MSDVRNVIIIGSGPAGYTAALYTARASLRPLVFEGAVTAGGALMNTTEVENFPGFRDGIMGPDLMDNMRGQAERFGAELIPDDIVAVDLSGEIKTVTDTGGTVHRAKAVIVTTGSQHRKLGLPNEDALSGRGVSWCATCDGFFFKDQDIAVIGGGDTAMEEATFLSRFAKSVTVVHRRDTLRASKAMQDRAIADPKISFVWDSEVAEIQGDQKLAGLKLRNLKTGETSELPVTGLFIAIGHDPRTELFKGQLDLDDEGYLKVASPSTRTNLTGVFGAGDVVDHTYRQAITAAGTGCAAALDAERYLAALADGDQTAEPEKTTV
>NC_013929.1|WP_005482961.1|5149164_5149497_-|thioredoxin
MAGTLKNVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAQEYGDKIEIVKLNIDENPATAAKYGVMSIPTLNVYQAGEVAKTIVGAKPKAAIVRDLEDFIAE
>NC_013929.1|WP_013002252.1|5148494_5149112_+|GNAT-family-N-acetyltransferase
MGRRLVPLTLDNLQDIPKRCRSCVFWELDPVSGEAAVRAGTPALEKEAWISAVLLDWGSCGRVVYVDEVPVGFVLYAPPAYVPRALAFPTSPVSPDAVQLMTAFITQGYQGQGLGRVMVQTVAKDLLRRGFKAIEAFGDARWKEPACVLPADHLTAVGFKTVRPHPTYPRLRLELRTTLSWKEDVELALDRLLGAVQKEPALRPL
>NC_013929.1|WP_041669467.1|5147072_5148170_+|ParB/RepB/Spo0J-family-partition-protein
MSDRRRGLGRGLAALIPAAATGEKDSPAAGASATAPSAVPSVFTPERGVGASKVATLSPVSRETEEASPNGAAERPAAPVGAYFAELPLDSITPNPRQPREVFDEDLLQELVTSIKEVGLLQPIVVRQVGPARYELIMGERRWRACHEAQLEAIPAIVRATDDEKLLLDALLENLHRAQLNPLEEAFAYDQLLKDFNCTHDQLADRIGRSRPQVSNTLRLLKLSPAVQRRVAAGVLSAGHARALLSVEDSEEQDKLAHRIVAEGLSVRAVEEIVTLMGSHPKASTRSKGPRAGSVPSPALGELATRLSDRFETRVKIDLGQKKGKITVEFASTEDLERILSTLAPGEKLALQRSLLDDDSEETEV
>NC_013929.1|WP_013002261.1|5162055_5163138_-|inositol-3-phosphate-synthase
MGSVRVAVVGVGNCAASLVQGVEYYKDADPASKVPGLMHVQFGDYHVRDVEFVAAFDVDAKKVGLDLADAIGASENNTIKICDVPASGVTVQRGHTLDGLGKYYRETIEESAEAPVDVVQVLKDRQVDVLVCYLPVGSEAAAKFYAQCAIDAKVAFVNALPVFIAGTKEWADKFVEAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVVLDRTMQLNVGGNMDFKNMLERERLESKKISKTQAVTSQIPDRELGEKNVHIGPSDYVAWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDALRAAKIAKDRGIGGPILSASSYFMKSPPVQYFDDEARESVEKFIKGEVER
>NC_013929.1|WP_013002262.1|5163182_5163863_-|helix-turn-helix-transcriptional-regulator
MSRRSGILEFAVLGLLREAPMHGYELRKRLNTSLGVFRAFSYGTLYPCLKTLVANGWLIEEPGGTPEDAAAVPLTGRRAKIVYRLTAEGKEHFEELLSQTGPDAYEDEHFAARFAFFGQTSRDVRMRVLEGRRSRLEERLEKMRASLARTRERLDDYTLELQRHGMESVEREVRWLNELIESERAGRDLKGPGDAEPARDTTEGAPGALPRPGDLPGPDAPGDTTT
>NC_013929.1|WP_173402895.1|5164236_5166906_+|transglycosylase-domain-containing-protein
MSEHRRKPPQPQGGGRAAARRGQSASSGRRAAPRGATGSLSETYGPGGEENQYEGRAATRRASQRSADSGIGGSRRRAAEPAGRGPGRGRGRADPPGKQRFIDYPRAGKYGVMRWVPSWRQATGLLIGFFGSLVAAAGIGYAVVAVPDPAQAATAQNNVYYWSDGSQMVATGGEVNRQIIAYEKIPKAMRYAVMSAENKTFETDSGVDPMGIARAVVNMAKGGQTQGGSTITQQYVKNAMLDDQSQTLSRKVKELFISVKVGTSVEKEEIMSGYLNTAYYGRGAYGIQAAARTYFGKDAEKLNPSQCAFLAAVLKGATYYDPAGAPSIDPEASPENNRKRATYRWRWILNEMVKDKHLPAAERNKYNDFPKIQSPRSNAQLGGQIGYLVDTAKGYILNNTDITQKQLEQGGYEIHTTFDKKKVKELEKAVVKVRKENIKPGQRPDTDTHVQFGGASVNPKSGAIEAIYGGEDATKHFTNNADVTGAQVGSTFKTYVLAAAMTWGKRDPDLADGDQAQDERTIVSPKSLYSGKNNLKIKDYDGQVWTNEKGEEWLQANDDDASYGRAPKYQIDLREAMRVSANSAFVQLGMDVGLDRVKEAAVAAGLKENSLTGTSFPSFSIGISDPSAIRMAGSYATFAASGKQNDPFSVKTVEHEGLTMFDHDDIAEPKRAFTAKVADNVTDVLKTVVDEGTGTSARLTGREVAGKTGTTDGNKSAWFVGYTPQLSTAISMYRMDDDESNKNRKFLEMYGTGGQETIHGASFPAEIWHDYMEDALQGQPAVDFPEPQPIGVIVNDDPDPTPTPTPTESEEEPPEPSPTPSESDPEPSPTPSDVCDNPFDPSCEDPGDTDAGGTDVGGADGGVTPTPTESEDDSRGNQNGGGLFGGPNG
>NC_013929.1|WP_013002264.1|5167090_5168599_+|DUF2029-domain-containing-protein
MCGMPSAETTRVSVDEPEPVQPTREDEVAATGSELIGGPIGRRALLGTSWWTPVRVVALVAIGMFALGMVQKLPCYDGAWFFGASSQYTHACYSDIPHLYQGRGFADGLVPYFDKIPGDMEYLEYPVLTGVFMEVAAWLTPGSGTIQDQEQWYWMVNAGMLMVCAAVIAVCCARIHRRRPWDGLLMALAPAFALTATINWDLLAVAMLAAATLMWSRGRPLAFGVLLGLATAAKFYPFLLLGPLFVLCWRAGKWRAFVTALLGAVGAWLAVNLPVMLLAPDGWAKFYRFSQERGVDFGSFFLVISQRLNIQITAETANAYAMVSMVLVCAGIAVLALTAPRRPRFAQLAFLIVAAFILTNKVYSPQYVLWLVPLAALARPRWRDFLIWQACEVAYFLGIWMYLAYTTSGDAHKGLPAEGYHLAIMAHLLGTLYLCAIVVRDILMPDRDPVRRAGDDDPSGGVLDGAEDVHVYGAAARPPRHAMHFEGPPVDWGNRDQEASSL
>NC_013929.1|WP_013002265.1|5168738_5169770_-|alanine-racemase
MALTLYVDTARWRAHHKHVQEQFPGLVPVCKGNGYGFGHEKLAEEATRLGSDILAVGTTYEAARIKDWFSGDLLVLTPYRRAEEPVPLPDRVIRSVSSVDGVYGLVGARVVIEVMSSMKRHGVSEQELPQLHAAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKSEDLIRLQQQFPQTRFRARIGTRLWLGDHEATEYRGAVLDVTRVAKGDRFGYRQQKAASDGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAGLATVNRNLSPFVWAGKQRWFAEPPHMQVSILFVPSDAPEPKVGEELVAHLRHTTTQFDRSVDR
>NC_013929.1|WP_013002266.1|5169835_5170957_-|peptidoglycan-bridge-formation-glycyltransferase-FemX
MSLTLRTISREQHLAYIQSLPSASHMQVPAWADVKAEWRSENLGWFDDRTGEMVGAGLVLYRQLPKIKRYLAYLPEGPVINWFAPNLTDWLEPMLAHLKQQGAFSVKMGPPVIIRRWEATSIKAGIQNPDVKRLRDIEADFIEPRAFEVADKLRRMGWQQGEDGGAGFGDVQPRYVYQVPLANRSLEEVHKNFNQLWRRNIKKAEKAGVEVVQGGYQDLEEWQRLYEITAVRDRFRPRPLSYFQRMWTALNTEDPNRMRLYFARHNGVNLSAATMLVVGGHVWYSYGASDNIGREVRPSNAMQWRMLRDSYALGATVYDLRGISDSLDETDHLFGLIQFKVGTGGQAAEYLGEWDFPLNKLLHKALDIYMSRR
>NC_013929.1|WP_013002267.1|5171181_5171496_-|hypothetical-protein
MAQTLRPNIAGSLFATDDKPHPVQDTLLAVTLVLGAVSFITAMFHHLHLLSSWTGLVGILTGAYGQFISETTRERFGLIVGLGASAVGFFLGMAHGGLFGGLIG
>NC_013929.1|WP_005482942.1|5171757_5172048_+|30S-ribosomal-protein-S6
MRHYEVMVILDPDLEERAVAPLIENFLSVVREGNGKVEKVDTWGRRRLSYEIKKKPEGIYSVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPETH
>NC_013929.1|WP_013002268.1|5172123_5172681_+|single-stranded-DNA-binding-protein
MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVEEVGASLRSATAKVTKTAGGGRGGQGGGGWGGGSGGGQQAGGAPADDPWASGAPAGGNQGGGGGGWGGSSGGGGGYSDEPPF
>NC_013929.1|WP_003949403.1|5172764_5173001_+|30S-ribosomal-protein-S18
MAKPPVRKPKKKVCAFCKDKVTYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPYTSTAR

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Crispr_ID: NC_013929_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_4

5657871-5657941

Orphan

Consensus_repeat	Method
CCCTGAGAAGCCGGGGCTGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_4

>merge|NC_013929|4|5657871-5657941|CRISPRCasFinder
CCCTGAGAAGCCGGGGCTGCGCCCCTGGCTTTTCAGCGCCGGCTCCGGCCGTGAGAAGCCGGGGCTGCGCC

>NC_013929|4|4|5657871-5657941|CRISPRCasFinder
CCCTGAGAAGCCGGGGCTGCGCC	CCTGGCTTTTCAGCGCCGGCTCCGG
CCGTGAGAAGCCGGGGCTGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013002712.1\|5659776_5662920_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237603
NC_013929.1\|WP_037722789.1\|5654899_5655670_-\|futalosine-hydrolase	unknown	unknown	gnl\|CDD\|236194
NC_013929.1\|WP_013002711.1\|5658416_5659349_+\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NC_013929.1\|WP_013002710.1\|5656231_5657620_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_013929.1\|WP_037722782.1\|5663795_5664584_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376989
NC_013929.1\|WP_013002704.1\|5651223_5652279_+\|membrane-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002721.1\|5671919_5672357_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013929.1\|WP_037722812.1\|5654019_5654847_-\|1,4-dihydroxy-6-naphthoate-synthase	unknown	unknown	gnl\|CDD\|270353
NC_013929.1\|WP_013002715.1\|5664893_5665742_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002717.1\|5666543_5668946_-\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319795
NC_013929.1\|WP_013002702.1\|5648005_5648191_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002720.1\|5671572_5671755_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|372110
NC_013929.1\|WP_013002706.1\|5653169_5653421_-\|membrane-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002719.1\|5670137_5671556_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NC_013929.1\|WP_005486266.1\|5653614_5653998_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_013929.1\|WP_013002703.1\|5648409_5651007_-\|helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|379300
NC_013929.1\|WP_041669570.1\|5652510_5653137_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_013929.1\|WP_037722784.1\|5662987_5663533_+\|molybdenum-cofactor-biosysynthesis-protein	unknown	unknown	gnl\|CDD\|225167
NC_013929.1\|WP_106437298.1\|5665811_5666366_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002709.1\|5655686_5656157_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013002712.1\|5659776_5662920_+\|hypothetical-protein	gnl\|CDD\|237603	PRK14083, PRK14083, HSP90 family protein; Provisional.	0.00113057
NC_013929.1\|WP_037722789.1\|5654899_5655670_-\|futalosine-hydrolase	gnl\|CDD\|236194	PRK08236, PRK08236, hypothetical protein; Provisional.	9.9728e-87
NC_013929.1\|WP_013002711.1\|5658416_5659349_+\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.39963e-103
NC_013929.1\|WP_013002710.1\|5656231_5657620_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.2916e-25
NC_013929.1\|WP_037722782.1\|5663795_5664584_+\|hypothetical-protein	gnl\|CDD\|376989	pfam03100, CcmE, CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.	0.00668945
NC_013929.1\|WP_013002720.1\|5671572_5671755_-\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|372110	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system. CopG antitoxin is a member of a type II toxin-antitoxin system family found in bacteria and archaea. Most antitoxins encoded by the relBE and parDE loci belong to the MetJ/Arc/CopG family of dimeric proteins which bind DNA through N-terminal ribbon-helix-helix (RHH) motifs. The toxin for CopG proteins falls into the family BrnT_toxin, pfam04365.	0.000381619
NC_013929.1\|WP_037722812.1\|5654019_5654847_-\|1,4-dihydroxy-6-naphthoate-synthase	gnl\|CDD\|270353	cd13635, PBP2_Ttha1568_Mqnd, A menaquinone biosynthetic enzyme exhibits the type 2 periplasmic-binding protein fold. This group includes Ttha1568 (MqnD) from Thermus thermophilies HB8, an enzyme within an alternative menaquinone biosynthetic pathway that catalyzes the conversion of cyclic de-hypoxanthine futalosine to 1,4-dihydroxy-6-naphthoate. Menaquinone (MK; vitamin K) is an essential lipid-soluble carrier that shuttles electrons between membrane-bound protein complexes in the electron transport chain. Ttha1568 has significant structural homology with the members of type 2 periplasmic-binding fold protein superfamily. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.47204e-141
NC_013929.1\|WP_013002717.1\|5666543_5668946_-\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NC_013929.1\|WP_013002721.1\|5671919_5672357_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.06642e-19
NC_013929.1\|WP_005486266.1\|5653614_5653998_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.22014e-26
NC_013929.1\|WP_013002703.1\|5648409_5651007_-\|helicase-associated-domain-containing-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	1.89816e-41
NC_013929.1\|WP_041669570.1\|5652510_5653137_+\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	3.75117e-22
NC_013929.1\|WP_037722784.1\|5662987_5663533_+\|molybdenum-cofactor-biosysynthesis-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.20621e-24
NC_013929.1\|WP_013002719.1\|5670137_5671556_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	9.42312e-107

>NC_013929.1|WP_013002710.1|5656231_5657620_-|MFS-transporter
MTGAERSGARGSGRVTGAVRSVGRALHLPFTGPARGIRKATHAHGAGESGLGKLIELHGVNGAGDVMITVSLASTVFFSVPTDEARGRVALYLAITLAPFALLAPVVGPLLDRLPHGRRAAMACAMLARALLALLLVGAVETGSLQLYPAALGVLVASKAYGVVRSAVVPRLLPPRFSLVKANSRVTLCGLLATGVAAPIGAGLQALGPRWPLYGAFVIFVAGTFLSFTLPAKVDSAKGEDRALLAADPEHLHGPHRSETLKRPGLRTVGPAVTHALAANAALRGLSGFLIFFLAFLLRIHPLHGQSAAVSLGMVAVAAGTGNALGTAVGAWAKQRSPELIIVTVVAVELGVAITAALFFSAFFIACLAAVAGFSQALSKLCLDALIQRDVPELVRTSAFARSETLLQMAWVVGGAIGIALPLNGTLGMAVAAAIVAAGWLTTVRGLLSSARHGGAPRARVA
>NC_013929.1|WP_013002709.1|5655686_5656157_-|hypothetical-protein
MTFPRSRRAAATLGAVSAGLLVLSACDEPTPMATVTIGTESISAEAECYRTLDVAQAKECAEEKPSKSIELPDGKALRIGVDPEVAKTGWALWINGEQATSDTFDKTYWSFENPGLFATQPGQPAQKSLTISIVEQNASGSAIKGVWNFKLKNPDA
>NC_013929.1|WP_037722789.1|5654899_5655670_-|futalosine-hydrolase
MRILVATAVPAERDAVARALPGPATEVRLPAGTLHRFHGTPHEHDLLAAGVGPALAAASTAAALTAAALAGRPYGLVLSAGIAGGFPPEAPLGSLVLADEITAADLGAETPDGFVPVTDLGFGTVTHHPPRDLVRAAATATGARTGTVLTVSTVTGSAERAAALRARHPRALAEAMEGFGVAEAAAAHTTPVLELRAVSNPVGPRDRAAWRIGDALTALTEAYGKLTPVLESWDPHEPYASHEPHEHHAPSDAHEH
>NC_013929.1|WP_037722812.1|5654019_5654847_-|1,4-dihydroxy-6-naphthoate-synthase
MAYSPCPNDTFVFDAWAHGRIPGAPALDVTFADIDITNGMAERGELDVLKVSYAVLPYVLDEYALLPCGGALGRGCGPLVLTREPGTDLTGRTVAVPSERSTAYLLFRLWAADTLPGGVGEIVVLPFHEIMPAVRDGRVDAGLVIHEARFTYRNYGLHKLADMGEHWEGTTGLPIPLGAIIAKRSLGAETLTGLADTIRASVRAAWDHPEISRPYVLEHAQEMDPAVADQHIGLYVNEFTAGLGEDGYAAVRGLLTRAAAEGLVPPLGPDALEFP
>NC_013929.1|WP_005486266.1|5653614_5653998_+|cold-shock-protein
MPTGKVKWFNSEKGFGFLSRDDGGDVFVHSSVLPAGVDTLKPGQKVEFGVVAGQRGDQALSVTILEPAPSVAAAQRKKPDELASIVQDLTTLLENITPMLERGRYPDRAAGGKIAGLLRAVADQLDV
>NC_013929.1|WP_013002706.1|5653169_5653421_-|membrane-protein
MRDKTQPNSAEPGDRLIRAGAIVFFVGAVATLVTVAPLFLGTEPFPTYMFVLSMLMGVGFLIAGAGVLQSVAAGRRRAREARP
>NC_013929.1|WP_041669570.1|5652510_5653137_+|HAD-family-hydrolase
MGGMTSRALTVGFDLDMTLIDSRPGIHACYEALAARTGTYIDADLAITRLGPPLADELACWFPAADIPAMADLYRAMYPAIAIAATPAMPGAPEAIAAVRAAGGRAIVVTAKYEPNAKLHLEHLGIEPDVVVGDLWAEAKAAALREHGASVYVGDHTGDVRGARTARAYAVAVATGPCDERELREAGADVVLADLTAFPAWLTGHHRP
>NC_013929.1|WP_013002704.1|5651223_5652279_+|membrane-protein
MGIESDQVVYEYLSRVGDLAQQRQLPSATRMRLVAGLRDEIDRRRAKAPVDSPAAVRRIIARLGTPGEVVEAAGAPGDVPEPRAAAVPVQRATGADGDGTDDAGEQAKGLSRGLRRVVPRPRSADAGTPPPPAGGAAPPHLAPLHELGDGDAQPDWWRVGGGGGPAGADIGFGLGDSVPGFVGGVEIPELLKPPPVQAEGEAVRGAAEKEKEAAAAAVVTEEDGGRRRRLRLPRLRASGAGWSNPLLLLAAVLLVAGAVMGSLVPLGLGWLIAYLSRRLTPAESKWAVMGIPGAVAAGGVVWLWGRTDGRWGEPIAEGHMDAALAEAWPWMLRIAAVSSAAYLLWRSQRPR
>NC_013929.1|WP_013002703.1|5648409_5651007_-|helicase-associated-domain-containing-protein
MSTEEHTPTEAAPAGGAPRSLAEALRGRDDRSLAVLLRARPDLITPVPTDLTQLATRAGTRASVVRALERLDRFALQTAQALAVASDPASYGELAGLLAGDEGDPAVAAALPHALGTLRDQALVWGPEDRLRLVRTARELLAPSPQHPSPTGLGPTVAEATAGMSPGRVQEIVAEAGLASTHDSVSAVAALAGLFRDRRRMAALLAAAPPESLDVLARLVWGPPYGQVTASPAAHLRWLLDRGLLLPTAPGTVVLPREVALHLRAGRAHREVRPLPPPVEASGAHRPQVVDATAAGQAYTALATVEELLKDWDEGGPGVLRAGGLSVRDLKRTAAALDLSEQTTAFWVELAYTAGLLASDGEADERYAATPAYDEWLESPAAERWARLATAWLSATRTAGVIGERDAKDRTLSALGPGLDRSAAPEVRHRVLALLAGLPEGTSAAPDSVLARLHWERPTRGGQQPPSSASQARQGDDLRARIARWTLSEAESLGVTGRGALSSHGRALLGLPHEEAAPADLPETPGDRLPAHHVPLPHPPAPSPDPVAERAVAASRAGRLLAPLLPEPLDHVLLQADLTAVAPGPLKRPLADALGVLADVESKGGATVYRFTPGSVRRALDAGRSASDLHDFLTAHSRTPVPQPLAYLIDDVARRHGQLRIGAASAYVRCDDDATLSEILADKRSQGLGLRRLAPTVLAAQADPATLLDGLRAMGYAPAAESAEGDVLITRAHARRTPPRTAPEPVPDGPPAPDDTLLGAAIRAIRAGDLASTAPRRTTGEQEPSGTLPRTGSAETLATMQAAVLTGEALWIGYVNAEGSASQRVIAPVRVEGGFVTAYDHTADEVRTFPLHRITGVAELADDAT
>NC_013929.1|WP_013002702.1|5648005_5648191_-|hypothetical-protein
MRPLATLVSALAAALAAVALVGVLGSPAAANPPLPLPELGTLVGEGIGVEGPLIQNVSLLK
>NC_013929.1|WP_013002711.1|5658416_5659349_+|DUF3027-domain-containing-protein
MSAATTRSRTPDRLCAEAVDLARSAAEEAAAPGVVGEHAGLVSEGDRVVTHFFECKEMGYRGWRWAVTVARASRAKFVTLDEVVLLPGPDALLAPEWVPWSERLRPGDMGPGDLLPTDAEDLRLEPGYSGEDEPLPNSPVSHDMAELVEAEDAEVTAGVPAHLPLAPTRGSIAAVAEELGMRRARVLSRYGLHTAADRWEEGFGAKTAMAQAAPAACVSCGFLVAIGGSLGQAFGVCANEFAPADGRMVSLTYGCGGHSEAAVMPAPPRPAPPRLDETRVDPFPLRPSPDSGSVPVGSEEAESEADLGHS
>NC_013929.1|WP_013002712.1|5659776_5662920_+|hypothetical-protein
MSKFVRPAAEGADPFGTARLRRGVLDAWATSPARFREDANAEEDLVLGGYRDRLVVELAQNAADAAARAKVPGRLRLTLRDGVLVAANTGAPLDAGGVESLSTLRASAKRDAQGHDGAVGRFGVGFAAVLAVTDEPAVVGRHGGIRWSLAEARLLAAETARHSPGLGDEIRRRDGHVPLLRLPFAAEGTAPESYDTVVILPLRDTAAADLAERLLHAVDDALLLALPGLDEVVIEIGADEVRTVRRSVEGAHVVVEDSRDGVTRWRTAAEHGALDAALLADRPVEERLRPHWSVTWAVPTGPDGAPVRPRTSPVVHAPTPSDEALGVPALLIASFPLDTTRRHAAPGPLTDFLVERAADAYAGLLAAWEPVAEGIIGLVPGPLGKGELDGALRRAILERLPRTAFLPRAVTPEPDDELEGLPAALRPRDAEVVEGAGAETVRVLADVLPSLLPAGLERRAELRTLGVARLPLGDVIDRLAGLEKAPDWWRRLYDSLAGVDPDRLSGLPVPLADGRTTIGPRQILLPAPDGPQAARPETLARLGLKVAHPDAAHPLLEKLGALPATPRAVLTTPQVRAAVAASLDDDGGVWDEEDGRPDADELADLVLALARDAALEPGDEPWLGALALPDEDGELAPAGELVLPGSPFARVMREDELALVDAELADRWGEQPLAACGVLATFALVRATDVVLDPDELEPRDGDFAEPDDAGLLDAVDVWSEDILDRFPDSPVPPVATEIVAVRDLDLVDEDRWPEALALLAKPPLRDALVQPVRVLLPDGTHEVVRPYTAWWLRGHPVLDGRRPAGLLAAGGDPLLRGLYDEADATGFEDEQVLRALGVRTSVAALLDEPGGAAELLDRLADPDLPVSAAQLHGLYGALADLDPDQVTLPDELRAVLDGEVTVVDAADAVVVDSPDLLPFTAGTPLLPVRPSRAGELAELFQVRRLSESVTGEVDSEGTEHDVPEAVRVLLGPATPASYVEHEELLVDGVELDWRRTRDGVLHAATLEGVAAGLAWAAGQWPRRFEVAALLEDPSRTAELARDRWFD
>NC_013929.1|WP_037722784.1|5662987_5663533_+|molybdenum-cofactor-biosysynthesis-protein
MTARVTAVSANGTYSFSKPNRTSITLLTGLGVEGDVHAGKTVKHRFRMTYEPDAPNLRQVHLMHEELFDELAAKGFTVAAGQLGENVSTRGVDLLGLPTGALLRLGDEAVVEVTGLRNPCDQINTFRKGLLKEVFALDASTGEFTFKSGIMGVVRQGGVVRPGDGIAVELPAGPHRPLERV
>NC_013929.1|WP_037722782.1|5663795_5664584_+|hypothetical-protein
MHKRAIVGAAIGALALSAFVAPAAQAAPTAGDTTISNVVVNGGKPVVVGTGKKTVTVTFKASDNAGIDLANVTVVLYHGATLDTSDSGAVANGNSDSRATCTEVSATTASCKASFTVETQKNLINSVAGTWKAWIFAWANDDDNAKKDPAKTFKIQRQTKLTGANASPEPVKKGSTITVTSKLTRANWDTEKFPAYGGQSVKLQFKKSGTSTYTDVKTVKSSSTGALKTTVKASADGAYRFTFAGSSGTAAVTSAADAIDVK
>NC_013929.1|WP_013002715.1|5664893_5665742_+|hypothetical-protein
MRTRATVAAVVGALALSALGIPAAHAAGSTAMSGKPYTLDVSFSNFKIAKSVKVGIGGTVDTPVSFTLKHGSGVNITAKDFVTEPFLYRGTFGDEDTPQLFGDDFATCKVATSTTASCKGTITIRPGAGDLLNSQAGTWKAGADAIAFNGQDPSNDKLDYSKIGYKEQGGLASTLVQRLAKLTVNAGPEPVKKGGTVTATGRLTRADWQSHTYKPFAKQPVKLQFRKAGSSTYTTVRTVYSDASGNVKATGTATYDGYWRFSYAGVTTTAPVGATADYVDVK
>NC_013929.1|WP_106437298.1|5665811_5666366_-|hypothetical-protein
MNPYQSVEFHAPCGHLISAPADRVGQDVRCPHCHQVARVPAAEVPYASAVPLPAGAAEPAALTALYVTALIGGLLGAGLVYFVMFDEFSETELVSITPLWFFPIVFGLYGFASQRLLRRIATGRARDLKEAAGMSIDVAGYWAALVLFPFLVLKWRSSLLVSLAAALFWAVLLWLFFMLLFPSL
>NC_013929.1|WP_013002717.1|5666543_5668946_-|HAD-IC-family-P-type-ATPase
MTHIDAGTELDPVHPTPVPAHPGRARGLSAAEVAGRVARGEVNDVPVRSSRSLVDIVRANVFTRFNAIIGVLWVIMLFVAPIQDSLFGFVILANTGIGIVQEWRAKKTLDSLAVIGEAKPTVRRDGVAAPVGTSEIVLGDLIEIGPGDKIVVDGECVETDGLEIDESLLTGEADPVVKHPGDPVMSGSFVVAGGGAFTATKVGREAYAAQLAEEASRFTLVHSELRSGISTILKYVTWMMVPTAIGLVVSQLIVKENDFKDSVARTVGGIVPMVPEGLVLLTSVAFAIGVIRLGRKQCLVQELPAIEGLARVDTVCLDKTGTLTEGGMDVTELRPLNGADEAYVRTVLGALGESDPRPNASLRAVIDACPDSGGWRCTESLPFSSARKYSGASFGESDGESSTWLLGAPDVLLPDGDPALTETDRLNEQGLRVLLLARVTRELDDPEVARDARPTALVVLEQRLRPDAADTLRYFEEQNVRAKVISGDNAVSVGAVAGKLGLTGEVVDARRLPGERDGMADALDSGTVFGRVTPQQKRDMVGALQSHGHTVAMTGDGVNDVLALKDADIGVAMGSGSEATRAVAQIVLLNNSFATLPSVVAEGRRVIGNITRVATLFLVKTVYSVLLAVLVVCWQVEYPFLPRHLTLLSTLTIGVPAFFLALAPNKERAQPHFVRRVMRYSIPGGVLAAVATFVTYLIARHHYTGEGALEAETSAATLTLFLISMWVLAIIARPYTWWRLGLVAAMGGCFVVVLVVPSLQDFFALRLVGAAMPWIAVAVAAGASALLELLWRRVDRRFPA
>NC_013929.1|WP_013002719.1|5670137_5671556_+|NCS2-family-permease
MSPQSSTLGVFDRHFRITERGSTLSREIRGGFATFFAMAYIIVLNPIILSSAKDMYGHQLDYGQLVTATAVTAAFTTLLMGVIGNVPIALAAGLGVNTVVALQLAPRMSWPDAMGMVVLAGFVVMLLVATGLRERVMNAVPLGLRKGISIGIGLFIMLIGLVDSGFVTRIPDAAHTTVPLQLGATGHLDGWPVLVFVLGALLTLALIVRKVPGAILISIVAMTLLAVVVQAAADLPEGAWGLTTPKWPGNPVASPDFGLIGQVSLFGGFSKVGVLTGVLFVFTVLLSCFFDAMGTIMGVGDEARLTDADGQLPGINKVLFVDGIAVAAGGASSSSATTCFVESTAGVGEGARTGFANLVTGALFAAALFLTPVATMVPSQAATPALLAVGFLILANSVREIDWADYTIAIPAFVTMVMMPFTYSITNGIGMGFITFVVLRLAAGRGREVPVAMYVVAAVFGFYYLMPALGLT
>NC_013929.1|WP_013002720.1|5671572_5671755_-|ribbon-helix-helix-protein,-CopG-family
MGTTVLSLRIDEELLDRLRTHAAKRGMSVQDYVIGTLIRDDFDERFQTAVEETEKFYGVR
>NC_013929.1|WP_013002721.1|5671919_5672357_+|MarR-family-transcriptional-regulator
MPDLNHGDDEAAVNALRSAVMRLSRRLKHQRVDESLSPTEMSVLGTLARCGTATPGELARKEHVQPPSMTRIVALLESKGLVKLEPHPEDRRQKVVTQTERAEAMLEESRRKRNAFLSSLVEGLDEDEWEKLRAAAPVLEKLAHL

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Crispr_ID: NC_013929_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_5

5729224-5729323

Orphan

Consensus_repeat	Method
TCGCGCAGTTCCCCGCGCCCCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_5

>merge|NC_013929|5|5729224-5729323|CRISPRCasFinder
TCGCGCAGTTCCCCGCGCCCCTGAATGGGCTGCGCCCGATTCAGGCTGTCTTCGGGTGCGGGTTGTGTGGGGTTGCTCGCGCAGTTCCCCGCGCCCCTGA

>NC_013929|5|5|5729224-5729323|CRISPRCasFinder
TCGCGCAGTTCCCCGCGCCCCTGA	ATGGGCTGCGCCCGATTCAGGCTGTCTTCGGGTGCGGGTTGTGTGGGGTTGC
TCGCGCAGTTCCCCGCGCCCCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013002774.1\|5732943_5734455_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341229
NC_013929.1\|WP_041669582.1\|5738549_5739128_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NC_013929.1\|WP_013002775.1\|5734599_5735805_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
NC_013929.1\|WP_037729379.1\|5739707_5740640_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NC_013929.1\|WP_041669580.1\|5724464_5726138_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_013929.1\|WP_013002771.1\|5730695_5731277_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237125
NC_013929.1\|WP_086022885.1\|5721936_5722605_-\|bifunctional-DNA-primase/polymerase	unknown	unknown	gnl\|CDD\|378140
NC_013929.1\|WP_037722606.1\|5737018_5738020_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|173838
NC_013929.1\|WP_013002760.1\|5715576_5716338_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|179510
NC_013929.1\|WP_013002773.1\|5732452_5732965_+\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|227455
NC_013929.1\|WP_107308628.1\|5720675_5721704_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_013929.1\|WP_013002776.1\|5735816_5736947_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NC_013929.1\|WP_078580346.1\|5731793_5732258_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NC_013929.1\|WP_013002767.1\|5726193_5727498_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380564
NC_013929.1\|WP_013002762.1\|5719497_5720355_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_013929.1\|WP_013002769.1\|5728259_5729141_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NC_013929.1\|WP_013002768.1\|5727626_5728127_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002770.1\|5729370_5730699_-\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274423
NC_013929.1\|WP_013002765.1\|5722924_5724307_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002761.1\|5716737_5717430_+\|metal-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224240

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013002774.1\|5732943_5734455_-\|AMP-binding-protein	gnl\|CDD\|341229	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase). Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA.	3.60484e-119
NC_013929.1\|WP_041669582.1\|5738549_5739128_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	2.66427e-17
NC_013929.1\|WP_013002775.1\|5734599_5735805_+\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	2.42478e-37
NC_013929.1\|WP_037729379.1\|5739707_5740640_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	2.07535e-19
NC_013929.1\|WP_041669580.1\|5724464_5726138_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	9.79114e-08
NC_013929.1\|WP_078580346.1\|5731793_5732258_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	4.27312e-24
NC_013929.1\|WP_086022885.1\|5721936_5722605_-\|bifunctional-DNA-primase/polymerase	gnl\|CDD\|378140	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	1.69594e-24
NC_013929.1\|WP_037722606.1\|5737018_5738020_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	2.1468e-20
NC_013929.1\|WP_013002760.1\|5715576_5716338_-\|SIS-domain-containing-protein	gnl\|CDD\|179510	PRK02947, PRK02947, sugar isomerase domain-containing protein.	7.02264e-112
NC_013929.1\|WP_013002773.1\|5732452_5732965_+\|EF-hand-domain-containing-protein	gnl\|CDD\|227455	COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only].	7.03868e-08
NC_013929.1\|WP_107308628.1\|5720675_5721704_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.45775e-104
NC_013929.1\|WP_013002776.1\|5735816_5736947_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.90275e-157
NC_013929.1\|WP_013002771.1\|5730695_5731277_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237125	PRK12519, PRK12519, RNA polymerase sigma factor; Provisional.	1.47805e-20
NC_013929.1\|WP_013002767.1\|5726193_5727498_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380564	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.	2.52261e-35
NC_013929.1\|WP_013002762.1\|5719497_5720355_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.80131e-29
NC_013929.1\|WP_013002769.1\|5728259_5729141_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	0
NC_013929.1\|WP_013002770.1\|5729370_5730699_-\|zf-HC2-domain-containing-protein	gnl\|CDD\|274423	TIGR03084, conserved_hypothetical_protein, TIGR03084 family protein. This family, like pfam07398, belongs to the larger set of probable enzymes modeled by TIGRFAMs family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized. [Hypothetical proteins, Conserved].	0.00228297
NC_013929.1\|WP_013002761.1\|5716737_5717430_+\|metal-dependent-transcriptional-regulator	gnl\|CDD\|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	2.4281e-44

>NC_013929.1|WP_013002769.1|5728259_5729141_+|formyltetrahydrofolate-deformylase
MNEQSTRAAAPADQYVLTLACPDKPGIVHAVSSYLFMTGGNIEDSQQFGDHDTGLFFMRVHFSAEAPVNVEKLRASFAAIGDSFRMDWQINRADEKMRVVLMVSRFGHCLNDLLFRASIGALPVEIAAVVSNHTDFAELVRSYDIPFHHVPVTKDTKAQAEARILEIVREENVELVVLARYMQVLSDDLCKQLSGRIINIHHSFLPSFKGAKPYHQAHARGVKLIGATAHYVTADLDEGPIIEQEVERVGHGVTPEGLVAVGRDVECQALARAVKWHAERRILMNGRRTVVFA
>NC_013929.1|WP_013002768.1|5727626_5728127_+|hypothetical-protein
MTVQGSETPSRRGRRSSTMGDMPLNDMPWWRWRSNVRSALHMLSDPGFQRDVWLAGVDGYGDVTDAVYRLVEDTWLDNWSAEKYVGTIFRDAQEAALVDTAVLRVLRIMHQVGPDAPVSAYLDHDAWPEAVRAAREAHVRLSASDGEDPDTAPRTLEVLRIMTRAA
>NC_013929.1|WP_013002767.1|5726193_5727498_-|ABC-transporter-substrate-binding-protein
MTGFRARRIPLLTHLPPGLATLLVRATTLAACASLVAGCGVVPGTTGGTGDGPVTVMTWAPEKTAATNKPGMPAMAKAYARWVNANGGINGRELRVLTCNDHNETVTAAKCARRAADANVVAVVGSYSQHGRSYLAPLESAGIPYIGGYGVTDDEFASALSYPVNGGQAALMAGLGEQLAKTCGPVALVRPDSIAGDQLPLLLDSGLRSGGHKGSEDQLAAEDATEYGGHAREALRRAAADPAARGCVVPALGDRTFTFMDSFRRDRADYPSVRTGTVLGSVDQTVIDATGGRSGPYEGAYVTGWYPVETDKRWERMKRVIREHAFDDNRIDPADPGVQTTWIAYTVLRTVLEKIGDGEVTAQTVRHVLDDGLEVGTGGLTPPLRWRFEDLIASAGFPRLVNPDVTFQVVRKGRLVAARQDFVNVEKTLVEAEG
>NC_013929.1|WP_041669580.1|5724464_5726138_+|hypothetical-protein
MTQSGQGEEPSARTAREGIVLPSDGGAPLHPSDLPPAPLPPSPPRPWDHREPWDQREPWDQREPWGSGEPAAPADPYSGAPSAPAAPEWGGQGSQSAYDAYGAYGAQTAYGTQGGTPLPPEGPQGHAYGLGGYDGVGSGAPLPPVAGEVAMPQAPMDEGATQYLPPVPAAGAVPMDERATQYIPPVAAHPPAAEAATQFLPPVGPGALPPEASADATAYLGRVPDHGAGPMPPAGHPGQPPHAMPGGNPDAQPTQFIPPVAAQTPAPPQSYGAPGQQRAQQRRQPPQQPDVFDSLFRSDAGTAGVSGATQQLPKIDPAQPPQGPSGHGGHGGHTGRSSSARRESGGAGGGRTKSRAPLIALVGVGIAVLGIGAGALMAGSGDKESPSANTPVAATGEPEESKAPADPAKAQAVALDKLLADSGNSRNSVIKAVGNIRTCTNLGQAATDLRDAAGQRNELVTRLGELSVDKLPDHEALTASLTKAWQASASADDHYAAWADQTAGKKGCRKGQARPTGQTQAGNVASGTASAEKAKAAKLWNTIATKYGLTQRQAVQL
>NC_013929.1|WP_013002765.1|5722924_5724307_+|hypothetical-protein
MAARPLVARQPNERLQALIQEAGCSNAGLARRVNMCGAEHGLDLRYDKTSVARWLRGQQPRGRAPAIIAEALGRKLGRTVTIDEIGMANGKNLASGVGLQFSPTVLGAIEQVCELWRSDVGRRDFLSGSSVAASALVEPSRDWLISAPDAQVARTAGPRVGSADVDAVRAMTQALVDLDHQYGSGHVRPVVVHYLNSVVSGLLAGSYREAVGRELFAAVARLTELAGYMAVDTGQPGLAQRYYIQALRLAQAAGDRAYGGYVLAASMSHLAAQLGNPREIAQLARAAQEGARGRATPRAESMFHAAEARGHALMGEARAAQAAAGRAVEALEGADPSAGDDPVWIRHFDEAYLADELAHCHRDLGQPEAAARRAEESLARHPESRARRRAIGYVLLATAQVQQREIEQACHTGMKAVELLGSLRSNRGAEYLDEFQQRLEPFREEAVVREFGARMDLQAA
>NC_013929.1|WP_086022885.1|5721936_5722605_-|bifunctional-DNA-primase/polymerase
MFIVEETIAGPEAAHIPKQRGESLLDTAVRYAEERHWDVFPGTWLEAVDGVQHCSCGSTVCAAPGAHPAREDWATQATGSATVARRLWSKQPTASILMPTGHTFDTIDVPETAGLLALARMERMELTLGPVTWTPDRRMHFFVLPGASVKVPDLVRKLGWSPLALDLKALGEGEYVAAPPTRYGSRGAVQWARRPTPANRWLPDAEELISPLAYACGRDGRR
>NC_013929.1|WP_107308628.1|5720675_5721704_+|IS30-family-transposase
MPAEALEPVGPSRYLSESDRIHIADRLREKASIRTIAAELGRSPSTISREIRRNRTVHPAGTWSYRPHAAQRRANKRKPRPKPGRIGQNPELRDFIQDHLTLRWSPEQICHALRRRFPDRPEMHVVHETIYQALYVQGRGELKRELTRALRTGRAMRRPHRQAASRRQRFPHPMVMISERPAEAADRAVPGHWEGDLIVGSNSRSAIATLVERSTRYLMLVHLPQGHGAAAVNAALAQTVQTLPPHLMRSLTWDQGTEMAYHRHFTVTTDIPVYFCDPASPWQRGSNENTNGLLRQYFPKGTDLSRHTREDLDAVAAELNSRPRKTLGWETPAERLSKLIAA
>NC_013929.1|WP_013002762.1|5719497_5720355_+|alpha/beta-hydrolase
MVRRIDVTGADGVSLAAWEFDEPPKSGEHEPRPGVLLLHGLMGRASHWAPTARWLSERHRAVALDQRGHGRSAKPEQAAYTREAYVEDAEAAVEQLGLGPVVLIGHAMGALTAWQLAARRPDLVRGLIICDMRASALGAASQREWENWFKAWPLPFATLADVRKWFGEDDPWVERPSPSRGEFYAEVMHEGPDGWRPVFDPEQMLKTRETWVYDAHWEELTQVRCPALVVRGLDGELGRAESQEMVRVLPHGQYAEVADAGHLVHYDQPDAWRAAIEPFLDGFAD
>NC_013929.1|WP_013002761.1|5716737_5717430_+|metal-dependent-transcriptional-regulator
MSGLIDTTEMYLRTILELEEEGVVPMRARIAERLDQSGPTVSQTVARMERDGLVGVAADRHLELTEEGRRLATRVMRKHRLAECLLVDVIGLEWEQVHAEACRWEHVMSEAVERRVLELLRHPTESPYGNPIPGLEELGEKDGADPFLDEGMVSLADLDPGTEGKTVVVRRIGEPIQTDAQLMYTLRRAGVQPGSVVSVTEAAGGVLVGSGGEAAELEADVASHVFVAKR
>NC_013929.1|WP_013002760.1|5715576_5716338_-|SIS-domain-containing-protein
MGLDGGTAGGRFLDAAIGLLERVRDEEAETVVAAGELIADTVADGGRLFAFGAGHSSLAAQDLVYRAGGLALMNLLAVPGTLGVDVLPATLGSALERVDGLATAVLDNSPLRAGDLLIVISLSGRNALPVEMAAHARERGVKVIGLTSVAYATATTSRHSSGTFLKDHCDLVLDSKIAVGDAELTLDTIPAPFAPASTVVTSALLQSVMATAAASLADRGIEPPLLRSGNVDGGLDWNDRIMREYGDRIFYLR
>NC_013929.1|WP_013002770.1|5729370_5730699_-|zf-HC2-domain-containing-protein
MTGGPTPFEGPGGRGNGSGGPSGPDGPRDGDGSEPVGPPRIPLPRSSVEDTGLPLPDPTPPAAPPAVLVLEHHVLKALLGAWALAACSAEEALAVEEHLGTCGTCADEARRLREAVGLLHPPESLDLDPALRTQVLGVCLGRRPPRIPVPRWAAPYDAETARLDALLQDICTADWHAPVRLRWFQGAGPVSRRTTVAGVIAHLLSVDGLVAAALGLDDPLGRPAAEDDGPVDRTPAGRTEAYWKASRFPPGRALRAPWRQQSHDIVRTTSFTGDGGRDGSDASGRLAVSYGGFELPLRDAMLDRAFECWIHAEDIAEAVDYPYEPPSGRHLHGMIDLAARMLPLSLAERRRTGLASPPAGTPGRSLRLEIEGAGGGEWLIPLDSPAAAASAGHEVAHVALDGVEFCRLAAGHVPPEEAAAGQSGDREAIKDVLFAAAALSRM
>NC_013929.1|WP_013002771.1|5730695_5731277_-|sigma-70-family-RNA-polymerase-sigma-factor
MATQDAPPRWDRRMQQRLARGEAAALGELYDRFASLVHGLAHRVLGDERGADGITREVFLQLWENPEAYDPRHGPLRSWVAALTHRLAVQRLRATETAALARGDGGTAEDLERKVHHASVAARADYIVQAMPSPLRAALELAYFQRRDYRQTAADLGVTEDEARRRLRLGLQLLSTAHDTRPSGTPPEPGATA
>NC_013929.1|WP_078580346.1|5731793_5732258_+|STAS-domain-containing-protein
MRGIAVTFQVTDGDQDGQGVPGDDVRGEGVRSEWAVLHVSGEMDLLTSPQLRQRVHEAVADGRRSLVLDLTDVVFCDSSGVGVLVATRRLMRSCRGRLRLILPADGHAGGGPSEGAHVNRVLAALGVRRLFDVHPDVASAVAPEPDDEAGPLSA
>NC_013929.1|WP_013002773.1|5732452_5732965_+|EF-hand-domain-containing-protein
MVSSEYERRIAARFATFDQDGNGWIDREDFSAASKAVLNEFGTTARSDKGQALYGGAEAFWQGMAGIADRDGDQRITRDEFVNGAVKRLRDNPDRFAEIARPFLHAALAVADADGDGRATVEEAARVLKALGAPEEVAAAAAATLDTDADGKVDEVEVVNAFARYFTVPE
>NC_013929.1|WP_013002774.1|5732943_5734455_-|AMP-binding-protein
MNDTAHALGTSRTLWELLDRRAGLTPDRPVLLQDDRTLSFGELRARAERVAAGLYDRGVRPGTVVAWQLPTRIETVLLSLALARLGAVQSPVIPFYRDREVGFALRESKAEFFAVPGEWRGFDHTEMARRLGARGVFEAYDRLPEGDPSALPAPPADGTTVRWIYWTSGTTSDPKGVLHTDRSLIAGGSCLAHALRLTRDDVGSVAFPYAHIGGPDYLVMLLLYGFPAVLFEHFALPDALEGYRKHGVTVAGGSTAFYSMFLAEQRKQPGVPVVPTLRLLAGGGAPKPPEVYHAVVREMGVQLTHGYGMTEVPMITMGAPDDSAENLATTEGRPPAGMEIRIAADGEVRLRGEAVCRGYLDPAQSAAAFDADGFFVTGDLGHLTGSGHLVLTGRAKDVIIRKGENISAKEIEDLLHGHPAVRDVAVIGLPDAERGERVCAVLEQPPSAEPLTLEAVVAYLRAEGLSVHKLPEQVEVVDTLPRNETLRKVLKYKLRERYSGTVK
>NC_013929.1|WP_013002775.1|5734599_5735805_+|amidohydrolase
MTELPRIISVDDHVIEPAHLFDTWLPEKYRDRGPKPLTAGIGELAYVAGKYQITMDPEGQPTDWWIYEDLKFPYKRNIAAVGFDRDEMTLEGITREEMRRGCWDPKARLADMDLNHVEASLCFPTFPRFCGQTFAEAHDKEVALACVRAYNDWMVEEWCGDSGGRLIPLCLIPLWDVGLAVEEIRRNAARGVRAVTFSEIPTYLGLPSIHSGYWDPFFAACQETGTVVNMHIGSSSQMPAASPDAPPAVQASLSFNNAMASMMDFLFSGVLVKFPTLKLAYSEGQMGWIPYALERADDVWEEHRAWGGVRDLIPEPPSTYYYRQMFCCFFRDKHGVASLDVVGRDNATFETDYPHVDSTFPHTKEVALDHVKGLDDETVYKLMRGNAIRMLGLDFDRGLGT
>NC_013929.1|WP_013002776.1|5735816_5736947_+|acyl-CoA-dehydrogenase-family-protein
MDLAYSPAEEEFRARLREWLAKTLPALPPKPSPDDWPGRRAYDLGWQRTLYDAGYADVHWDASPTTRLIFLEETEKAGAPYVGAGFVGLLHAGPTIAAEGTAGQRARWLPPILRGEEVWCQGFSEPDAGSDLAALRTRAHRDGDHYVVSGSKIWTSHAEVADWCELLVRTDPGAPKHRGITWLAMPMDAPGVTVRPLRTLAGSTEFAEVFLDEVRVPVANRVGEENDGWRVTMVTLSFERGTAFVGEVVACRRVLGEIAREARENGRWDDCSVRRRLGRLNAEFRALWRLTQWNVSAAEASGGVPGVGGSVFKLRYSRARQELFDAAGEVLGAGAVDLGRPWVLDRLGSLSYTIAAGTSEIQRNIVGERILGLPKG
>NC_013929.1|WP_037722606.1|5737018_5738020_+|acyl-CoA/acyl-ACP-dehydrogenase
MRFRLTEDQRALRDGVRELLARRFGQEALRAAVERPGLDRGLWRELGAAGFFALRLPEAEGGVGLGLPEAVLVFEEAGRALLPGPLVATHLAAGTVPGAATGEAVVTAVGGGGLVEWLAEADAVVDTAGRVRGAGDARETAARREAEGPREAGVLRAAGGLHGAGEVREAVEVRSVDPLTPLHRVPGGGSAPRPDDLFVLLTAAEQVGTAVRACEAAVQHARTREQFGRPVGAFQAVKHLCAELLVRVEVARTAVYAAAVTADPVDVAVARLLADEAAVRGARDCLQVHGGMGFTWEADVHLCLKRAWVRAERGGLITESEELLAKELLSEAV
>NC_013929.1|WP_041669582.1|5738549_5739128_+|ATP-binding-protein
MQLEIRPDPAEVGRARRWARSRLAGSGIGDDEPLAETLILLVSELVTNAVVHTGRPAVLRLLLSGLRDGAVGKVRLEVADTSACPPAPRCADGDETGGRGLALVEVLADRWGWSYEGVGKRIWCELDRVVPGVAGAVGFSGASGASGASGGAPAVGGGVLAPAVYPACGAVTGVAAVTRESRAREGMAYEAV
>NC_013929.1|WP_037729379.1|5739707_5740640_-|cyclase-family-protein
MSLPVEFHDIAKRVNNWGRWGVDDEIGTLNLITDEVVRAAAASVRSGRRVPLALPLQQDGVQTGMMPGRVNPLHAMVQINQEIFGPGTVACSDDAVTMGLQAATHWDALTHVSHSGRIYNGRPADTITPHGGAAFAGIDKARHIVSRGVLLDVPRALGLGDDRLPGNHAVTPEDLDAAEELAGTRVRAGDIVLVRTGQIRAYLGGDKHAYAFPSPGLSLRTPEWFHARDVAAVANDTLTFEIFPPEIEDLWLPVHALDLVEMGMPQGQNWNLEELSTACGQAERYAFLLSAMPEPFVGATGTPVAPIAIL

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Crispr_ID: NC_013929_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_6

5775873-5775997

Orphan

Consensus_repeat	Method
GGCGGGGCGGGCATGTGGCTGTC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_013929_6

>merge|NC_013929|6|5775873-5775997|CRISPRCasFinder
GGCGGGGCGGGCATGTGGCTGTCCTTGGTGGTGATGGTGTCGTCGGCGGGCGGGGCGGGCATGTGGCTGTCCTGCGGGGTGGCGAGGCCGCCACCCTCCTTCGGCGGGGCGGGCATGTGGCTGTC

>NC_013929|6|6|5775873-5775997|CRISPRCasFinder
GGCGGGGCGGGCATGTGGCTGTC	CTTGGTGGTGATGGTGTCGTCGGCG
GGCGGGGCGGGCATGTGGCTGTC	CTGCGGGGTGGCGAGGCCGCCACCCTCCTTC
GGCGGGGCGGGCATGTGGCTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_041669598.1\|5772318_5773467_-\|lipid-transfer-protein	unknown	unknown	gnl\|CDD\|181147
NC_013929.1\|WP_013002800.1\|5763842_5764874_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NC_013929.1\|WP_013002813.1\|5780708_5781692_+\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274680
NC_013929.1\|WP_013002805.1\|5771095_5771875_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NC_013929.1\|WP_078580183.1\|5786523_5787651_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225052
NC_013929.1\|WP_013002809.1\|5775351_5775753_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002812.1\|5779437_5780712_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
NC_013929.1\|WP_013002801.1\|5765222_5767565_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|270916
NC_013929.1\|WP_013002817.1\|5783724_5784516_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002802.1\|5767706_5768375_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_013929.1\|WP_013002803.1\|5768371_5769598_+\|CU044_5270-family-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002818.1\|5784695_5785436_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002814.1\|5781753_5782005_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_037729398.1\|5785631_5786387_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187600
NC_013929.1\|WP_041669599.1\|5776269_5779272_-\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NC_013929.1\|WP_013002806.1\|5771871_5772288_-\|OB-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|224462
NC_013929.1\|WP_148274225.1\|5769701_5771072_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223080
NC_013929.1\|WP_013002808.1\|5773624_5775289_+\|fatty-acid--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|236072
NC_013929.1\|WP_106437302.1\|5782852_5783608_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_013929.1\|WP_013002815.1\|5782004_5782397_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_041669598.1\|5772318_5773467_-\|lipid-transfer-protein	gnl\|CDD\|181147	PRK07855, PRK07855, lipid-transfer protein; Provisional.	0
NC_013929.1\|WP_013002800.1\|5763842_5764874_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	1.45003e-25
NC_013929.1\|WP_013002805.1\|5771095_5771875_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	3.03376e-41
NC_013929.1\|WP_078580183.1\|5786523_5787651_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|225052	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion].	1.16717e-38
NC_013929.1\|WP_013002813.1\|5780708_5781692_+\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274680	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity].	2.0831e-73
NC_013929.1\|WP_013002812.1\|5779437_5780712_+\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	2.22132e-29
NC_013929.1\|WP_013002801.1\|5765222_5767565_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.50843e-73
NC_013929.1\|WP_013002802.1\|5767706_5768375_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.86308e-26
NC_013929.1\|WP_106437302.1\|5782852_5783608_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.03351e-25
NC_013929.1\|WP_037729398.1\|5785631_5786387_+\|glucose-1-dehydrogenase	gnl\|CDD\|187600	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.18087e-78
NC_013929.1\|WP_041669599.1\|5776269_5779272_-\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	2.0542e-41
NC_013929.1\|WP_013002806.1\|5771871_5772288_-\|OB-fold-domain-containing-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	3.20606e-18
NC_013929.1\|WP_148274225.1\|5769701_5771072_+\|hypothetical-protein	gnl\|CDD\|223080	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism].	0.00205641
NC_013929.1\|WP_013002808.1\|5773624_5775289_+\|fatty-acid--CoA-ligase-family-protein	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0

>NC_013929.1|WP_013002809.1|5775351_5775753_-|hypothetical-protein
MITAPAGPGTPVVPRPERTPPALRAALARVAPHRLGEMDRQKDEAITLAARTGSLGPITRFLETWAVTVEIARHPATAARLHTAEHTARTVGHDDPAWREAMHEIRDLHATALRSLDQEPPGQEPTERTAADR
>NC_013929.1|WP_013002808.1|5773624_5775289_+|fatty-acid--CoA-ligase-family-protein
MIGEVEGRADLGREAWGTVPGLVRSAARRFGGDEAVVDGRTRVTYAELGARVERAAAACVANGVRTGDRVALWAPNSLDWIVSALGAVSAGAVLVPLNTRFKGGEAADVLARSRARLLFVTGTFLGTSYVASLRRAAGADGGRLRARGAGSVCERPGPLPALPHLEQVVVLADDAPADFRTWKDFLASGDGVGERAVRERAEALTGDSPSDIVFTSGTTGRSKGVVISHAQTLRAYEVWSELAGLRRGDRYLIVNPFFHTFGYKAGVIACLMRGATMIPQPVFNVETAMANVAAERVTVLPGPPTLHQSLLDHPARDDYDLGSLRLVVTGAAVVPLRLVERLRAELRVDTVLTAYGLSEASGIVTMCRRGDEPSVIASTSGRAIPGTEVRVVDPLGSALPAGSPGEVLVRGFNVMRGYFEDPAETARAVTSDGWLRTGDVGVLDEAGNLRITDRIKDMFIVGGFNAYPAEIEQLLGLHPDVADVAVVGVPDTRLGEVGRAYVVRRPGSHVTADDLIAWSRREMANYKVPRSVEFMRELPRNASGKVVKGELRGR
>NC_013929.1|WP_041669598.1|5772318_5773467_-|lipid-transfer-protein
MAVLKDATAIVGIGQTAFARQLPETERTLACRAILAALDDAGIAPDEVDALASYTMEETDEVEVAKALGLGDLTFFSKVGYGGGGSCATVAHLAAAIATGQATVGVAWRSRKRGSGPRPWKNTTVQLPTPAQWTRPYGLLRPADEIAMLARRHMHEYGTTRDHLFNVALACRNRANQNPAAIMYERPLTREMYMNSRWISEPLCLFDNCLETDGALACVVVSAERARDCRRTPVYVHSAAQGLPAQHHGMVNYWNDDPLTGPAWTAARHLWKHADITPDDIDVAQIYDAFTALIPLSLEGYGFCGRGEGGAFTEGGALESGGRLPLNTSGGGLSEAYVHGFNLINEGVRQLRGTSTAQVPGAAACLVTAGEGVPTSALLLRN
>NC_013929.1|WP_013002806.1|5771871_5772288_-|OB-fold-domain-containing-protein
MLTPAVDEDGAPFWEYAARGELRIQACADCGELRFPPRPCCPHCRSFATTWRRVGGRGRIWSYVLPHPPLLPDYAEQAPYNVVLVELADAPRIRLVGNLVSAPGARLDSVPVDRLRIGARVQVVFTADGLPQWVLERP
>NC_013929.1|WP_013002805.1|5771095_5771875_-|enoyl-CoA-hydratase/isomerase-family-protein
MTLRTTTDKDTGVTLLTLDRPERHNALDLATVGQLTLTWQELRHDDTVRAVVVTGAGDRAFCTGLDREAASSVPQPHSPFTIEDPLLRVGPKSNDLWKPVIAAVNGMACGGAFYLLGEAEFLVADPAATFFDPHTTYGMVSAFESILMSQRMPYGEATRMALTGTAERMSARRAYEVGLVSEVTEPGGSVTAALRCAEVIAGYPPEAVQGTVRACWAARETARAHALAYAPHLVSLGNLPTDRQTELFTGRRPGGYRVR
>NC_013929.1|WP_148274225.1|5769701_5771072_+|hypothetical-protein
MTTPLRRPALPATRVATVLAVCALALTPYAAQAQAQAQPRPQPQAPAQQRAALAKTPWKLSLRPAGPESTDFYDVAATGRNDAWAVGRILDDSWAWAPSAKHWDGRTWSDVPLAGTGGRPAQMEAVAASGPEDVWAAGTYTDVEVAAAQGAREAERLPDALLDRLPDAVANRLREGAEPPGAASPIVLQHWDGTRWKPVSRPGPAEGSIRFVLNMKSLGANSVWLTTLDWNPTATDPAQAYAGHLEHWNGRTWSRTALPQAPDGGPVEPSSIAGTGPDDVWVSAHSEKDGVAKPLLLHYDGRRWTVRPVPAPYAYAPGWVANHVVSTRRGTVHVLGKTNDPQVPSGLLSARWDGRGWRQLPTPTVDEVNASGVDASGNVWVAGWLPGGGPHTVFSRWDGTAWTGEELPAELTSTSWGSTVFDIEGVPGTRAVLAAGIAGCESAMDSCGLVVSRGLG
>NC_013929.1|WP_013002803.1|5768371_5769598_+|CU044_5270-family-protein
MKDTHGRSGRPDVMQVLADARPEELDPAKLADSPRQHADLARILARSTDGRAARFRLPERLRGGIRPFGTVAALAAVAASAVVVSTLDRDPLGTRPGAPPHSSSAEGPDASAPDGRLELLSAARKVGTADGEGTYWQTTTRSQDVNVVGAEGGEGPFLAVRDTATSQWSVGVRPGTRSLLVSGLDAEIAPRTKEDAARWRAAGSPRTMQAEVPGNEAGGTLGYTMGPRPPMVMRTDADEKIYALGPRNASYQDLLELPSDTAELRRELERRHGQDEGAEISDRTAYVLRQAADLITMPVKPAVRAAAYRVMAEQPGVRGLGRVTDPLGRKGTGIAFPGTYATSLGSVEQRVVVDPSTGGLLAELLVLVEPSARAREAGLDAGTTVNYTASTRTGWSDSQIEVPANARR
>NC_013929.1|WP_013002802.1|5767706_5768375_+|sigma-70-family-RNA-polymerase-sigma-factor
MTHAQRFRDIYEECYPRVLAYATSLVGRQVGEDITSETFTVAWRRVRDIPRPPLPWLLGVARNLVRELRRRDAHQYALAAAEAQQIGRGARGETGDVAADVTERDAALQALASLSEADRELLTLIAWHGLSARQAARVLGCTTATLTVRLHRARRRLEKALDPAHPAHPAHPAHPAHPAPAAPVRKAHSTPPVPPASPTPPVPPTPHAPQAPGRTDRRGALT
>NC_013929.1|WP_013002801.1|5765222_5767565_+|PQQ-binding-like-beta-propeller-repeat-protein
MVDQLTQHDPRRIGPFEVLGRLGAGGMGLVYLARSASGRRVAIKTVRTELAEDQLFRVRFTREVEAARAVSGFYTAAVVDADPRAAVPWLATAYVPAPSLEEIVNDCGPMPVQAVRWFAAGVAEALQSIHGAGLVHRDLKPSNVLVVEDGPRVIDFGIASGVSNTRLAMTNVAVGTPAYMSPEQAKDSRSVTGASDVFSLGSMLVFAATGHAPFHGANPVETVFMLLREGPDLSGLPDDLRPLIESCMQMDPTARPNPADLQAQLAPHLFGSGSDDSGTASAWLPEKAVTMIETRRGGRPAPKPQTSSGRSGGGRPTAPAPPPPPPYDPAPVPVGAPDTGPVRLAGGQVPIGPGPRVADARAAAVKAPPPEAGLAASWSRPRAGVNGADPAPVAAPPATPESAPSGWRPWRFRMSNDVWGTPSVADDLVYVTSFEVHALDVATGRRRFKTRDVAWSMAVADGRIHASDGPTLFALDAREGGDLWRLSTDAWVYSLKADRGTVVTATRGGGVQGWEASNGQKLWELTGAQTDFETPEAGPVVQDGTVYVWKDARLRALEARTGDERWSYPIGDAASCGGVPVRLAPAADGYVYISAGSRVLAVDIASGHVRWHFEAPAVFLSAPTFAPGPAVTGGGVYLADYLGTVYALDATDGRDRWRIATESRSSLEPVLVAAGHVHVGSGKGLYTLDAVTGTPKWRFQAGGEIVGAPSVAEGRIHFGSTDHLLYTLKADDGRLRWKLATGGEITGSPVVKDGVVYACSKDRCVYALDAEKGTGTARTS
>NC_013929.1|WP_013002800.1|5763842_5764874_+|VOC-family-protein
MADETGAAAGASAAAGAGAAAGAGAAAGAGAAAGAEGAAGPGAAAGTGAAEAGAGGAPYPEGVPCWVDAQLPDVEAGKRFYGELFGWTFAVAPGDGAHEVWAYVEGAPVAALAPKPDGRLPTVWTVHFATPDAAALTARITAAGGQVITPPTPVGTLGAAALATDPESAVFGLWQPGTHTGFGRRHEPGTFAWAELYTRDTKAANSFYAHLFHDALFGPDAVPDFGRAALTDVFPAEMPPHFLVHFGTKDCEEAVAAVGRLGGRVQVPPFDTSYGNVAVVTDNQGASFALLQRKNGNAWREAPQEADQTEQHPDELRQEGDDRRTDDPPARGARDGNAPEDDG
>NC_013929.1|WP_041669599.1|5776269_5779272_-|AfsR/SARP-family-transcriptional-regulator
MGGEPGVPQSGVPRVPEQRAAVDATVPEPAPQPPADLRFAVLGPVRAWRGTESLATGSPQQRALLAALLLREGRTATAHELIDALWGDDPPSQALAAVRTYASRLRKVLPGVLVSESGGYAVRGLPGGALDLAAAQELAADAEKARSSGDLLRARELLNRALGLWDGEVLASVPGPYAETQRARLEEWRLQLAESRLDMDLEQGCHAEAVSELTALTAAHPLRERLRELLMLALYRSGRQAEALAVYADTRRLLADELGVDPRPGLRELQQRILQADPGLAEPSAPLAAETSATPVRPAQLPATVPDFTGRAAFVKDLSEVLAEASGAEGQVMSVSALAGIGGVGKTTLAVHVAHQARSSFPDGQLYVDLQGAGARPAEPETVLGSFLRALGTADSAIPDSLEERAALYRSVLDGRRVLVLLDNARDAAQVRPLLPGTAGCAALVTARVRMVDLAGAHLVDLDVMSPDEALQLFTRIVGEERVAAERKAALDVVAACGFLPLAIRIAASRLAARRTWTVSVLAAKLADERRRLDELQAGDLAVKATFELGYGQLEPAQARAFRLLGLADGPDISLAAAAAVLDLPPEETEDLLEILVDTSLLESAAPGRYRFHDLVRLYARACAERDEQPPSVGSAAMSRLLDFYLATATRVYAIERPGDRTVDHLEATERAGHEFSDDMKALDWLHSEAASILACVQQSLGSDTLRRSVDLLLASKDLAESGASSLRYETATVAARDAAAALGDAHAEGRARTTLAQVLSRAGRFDEAHPEAERAIELGRRTGDPWTCGNAQNEQGIIANCRNQRTVSEAHLLEAIKAFRADGNRPGEASALCNLSRVLVSLGRTAVAIDLVRQGIAIYDELGLTFRLANARYALGIALSHADRKGEALEQLAQALGMFVQNRQRLWEGATHFRIAQVHLSARRPAQAAQHAEQALTTGCIGGEWMRANILTLLGRSLDSLGQADRARACWREALAIYEASRAPEAAELRALLRPFAAA
>NC_013929.1|WP_013002812.1|5779437_5780712_+|amidohydrolase
MDTLETSATDPATAPAPFPKIISVDDHTVEPPNVWQDRLPKKYLDTAPRIVRAPLKEMTFLGGRFKPVMGAPGDDGPIGDWWVYEDLHRPLTRLDTAVGYSRDEIKLEIITYEQMRPGSYDVPQRLADMDVNHVQSALCFPTFPRFCGQTFTEAADRELGLLGVRAYNDWMVEEWCGPDARGRLIPLTLIPLWDAELAAAEVRRNAARGVRAVAFSEIPPHLGLPSVHTDDWDPFLAACDETGTVVAMHIGSSSRMPSTSADAPPAVGSTITFANCCFSMVDWLMSGKFERFPNLRVMYAEGQIGWIPYILERADVVWEENRGWGGVADKVHRPPSELFADHVYGCFFDDAFGLKNIDAIGVGNVLYETDYPHSDSTWPESRQVGEAQMGHLDPDVVDRIVRRNAIELLGLTKEGLWAGPGSAR
>NC_013929.1|WP_013002813.1|5780708_5781692_+|LLM-class-F420-dependent-oxidoreductase
MSAAGEGRPDGSGAGLAYGLQLPVQSQSTLYAEPWEADAGPEDLAEIARAADRAGFAYIAACDHVAVPRRLAPAMSTVWYDPVATLAYLAAVTERVRLLSHVAVVGLRHPLLTAKQYATLDHLSGGRLVLGVGAGHVREEFEALGVDFERRGAVLDECVDALRAALGPDEFPSHHGKLYDFEDLGQRPRPAQARVPVWVGGSSPAAVRRAAVRGDGWLPQGDPRDRLPAQIARLRRLREEAGVTTPLTIGAITEPLYMGTPSWEVGRRTLTGGPAALADSLRAYGAMGVNQIQVRFRSRGVSELVDQVGVFGAEVGPLLQEDSARTS
>NC_013929.1|WP_013002814.1|5781753_5782005_+|hypothetical-protein
MSGSKKYSVSLPEGLAEAVRAQVGPGGFSAYVAEALEQRVAMDKLHDIVTDFETDNDPLSREEVESARAVLRHDRRDTGGAAA
>NC_013929.1|WP_013002815.1|5782004_5782397_+|hypothetical-protein
MPGTLLLDSEGLSKLYLKDRTVMALVQAALEEGVRVATTAMTTLEADYEPIHPARIRWVLSRIDVHDVTKDVTDRAAALLRERGLGGHKYAIDAVLSAVARSVPGPVTVLTSDPEDIGLLCGQAIEIVKV
>NC_013929.1|WP_106437302.1|5782852_5783608_+|response-regulator-transcription-factor
MRSPRHVRTSQHAGTPVSAVPAQPTRVPARPPRPAAPSPPGLSVALACAPGQWPHEGWPAPDDRYVSSALLVPPPYRELRGTGADVVVLRCEDPAESFAVLLKAMGPMSAPVIVVSPRRDAETVVEVFRGGAGYLVDGDYCTCMLSSAVVAATVGHTYFSPVACAAIRDAARHLPGHGEERERLRSLLSPRERQIMELLSTGLGAQEIGLRLSLSEKTVRNNLSNIYAKLDARGGTEAVLRWLGAAPGVRV
>NC_013929.1|WP_013002817.1|5783724_5784516_-|hypothetical-protein
MTRTGRSGNHRSKKKRITLMLAPVAALGLAGTLMYSAGAATPNEVAADCRTDSDKLANCEFVDVQAKRDSLGPNERVTSVTDNCGVTTAATKTFSGTASVTRVIQLEDGFNTDGSTKLASSVFEIGVKFATQEFNIKRDDTTSSFSFSRSDTVKADHIAFFMWSHKRTDVSGFLKATYKEAQDGQTVFFSPSEGATSVHVFYPQLLASGTPDGRLWLRNVQCGTPQANGIINSEGSVRAEPGFEQGGENVTDIEIPLSEVTIQ
>NC_013929.1|WP_013002818.1|5784695_5785436_-|hypothetical-protein
MAAKRRFKNKKVRYLAIGASLVTGTAVAAVLLPSASAAEEKTPDQIMRMCERTAKLNGKQQETRDFGGGLGDGFESDTCDFVETNFETFDGPTEKVTVDFPNCEPNATEPSKVTTTFSKAVGQGEGKYTATQQGALGGLFGALSGGWVKHKGTLDMTVKTATASESEQREVPVGKVMHVTFTPKMQRMTGEWRVHLDADPGSFAVNPSPEQNFVAPEVVEGPVILESAAGTPGLADGTSKVVLEDC
>NC_013929.1|WP_037729398.1|5785631_5786387_+|glucose-1-dehydrogenase
MGKLDGRVVLVTGAARGQGEQEARLFRAEGAEVVVADVLDDRGEALAKEIGALYAHLDVGREDDWAAAVAATKSAYGRVDGLVNNAGVLRFNSLVDTPLDEFMQVVRVNQVGVFLGIKTLAPEIEAAGGGTIVNTASYTGLTGMAYVGAYAATKHAIVGLTRVAALELARKGIRVNAVCPGSVDTPMTDPGDEASAETVARLYRKRVPLGRIGRPDEVARLALFLSCEDSSYITGQPFVIDGGWLAGVSLV
>NC_013929.1|WP_078580183.1|5786523_5787651_+|LLM-class-flavin-dependent-oxidoreductase
MEFGLFVQGYVGKRAETDPLAEHKALMEETEYVIQADRSGFKYAWASEHHFLEEYSHLSANDVFLGYLAHATDRIHLGSGIFNPLAQVNHPVKVAEKVTMLDHLTEGRFEFGSGRGAGSHEILGFIPGVTDMNYTKEIWEETIAEFPKMWLQDEYVGFQGKHWSLPPRKILPKPYGKSHPAMWYAAGSPPSYSMAARKGLGVLGFSVQKVSDMEWVLEKYKSAIVDAEPIGDFVNDNVMVTTTAICAPTHDEAVRIAVNGGLHYLPSLVFRYHDTFPRPDGFPVWPETLPEYNEEFIELLIAEELLICGDPDEVFRQCKRWEQAGADQLSFGLPVGVPKEATLQTIRLVGEHVIPKIDTDPVHRTSRFRSAASAG

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Crispr_ID: NC_013929_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_7

5897404-5897522

Orphan

Consensus_repeat	Method
GGCTCCACGCAGGGCACCGGCGGCACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_7

>merge|NC_013929|7|5897404-5897522|CRISPRCasFinder
GGCTCCCCGCAGAACGCCGACGGCTCCACGCAGGGCACCGGCGGCACGGGCACCGGCGGCACCGGAACGGGCACCGGCCAGGGCGCCGGAGGCTCCACGCAGGGCACCGGCGGCACGGG

>NC_013929|7|7|5897404-5897522|CRISPRCasFinder
GGCTCCCCGCAGAACGCCGACGGCTCCAC	GCAGGGCACCGGCGGCACGGGCACCGGCGGCACCGGAACGGGCACCGGCCAGGGCGCCGGA
GGCTCCACGCAGGGCACCGGCGGCACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013002914.1\|5886086_5887304_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|380079
NC_013929.1\|WP_078580347.1\|5890836_5891262_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215257
NC_013929.1\|WP_013002927.1\|5900257_5901169_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|133021
NC_013929.1\|WP_013002923.1\|5893121_5894429_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_013929.1\|WP_041670932.1\|5891657_5892485_-\|S-methyl-5'-thioadenosine-phosphorylase	unknown	unknown	gnl\|CDD\|236107
NC_013929.1\|WP_041670930.1\|5890257_5890734_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NC_013929.1\|WP_013002930.1\|5903051_5903582_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NC_013929.1\|WP_013002922.1\|5892716_5893052_-\|FmdB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225210
NC_013929.1\|WP_106437304.1\|5899545_5900154_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|366821
NC_013929.1\|WP_013002935.1\|5907212_5908016_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NC_013929.1\|WP_013002932.1\|5904517_5905873_+\|membrane-protein	unknown	unknown	gnl\|CDD\|236090
NC_013929.1\|WP_013002928.1\|5901165_5902488_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NC_013929.1\|WP_013002934.1\|5906588_5907071_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_013929.1\|WP_013002913.1\|5885170_5885929_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002918.1\|5890046_5890229_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013002929.1\|5902572_5903055_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_013929.1\|WP_013002915.1\|5887593_5888625_-\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239070
NC_013929.1\|WP_013002933.1\|5906121_5906535_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_037724629.1\|5903599_5904241_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_013929.1\|WP_086022965.1\|5894695_5896294_-\|potassium/proton-antiporter	unknown	unknown	gnl\|CDD\|235410

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013002914.1\|5886086_5887304_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	5.89174e-70
NC_013929.1\|WP_078580347.1\|5890836_5891262_-\|hypothetical-protein	gnl\|CDD\|215257	PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.	0.000763606
NC_013929.1\|WP_013002915.1\|5887593_5888625_-\|P1-family-peptidase	gnl\|CDD\|239070	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	8.37861e-93
NC_013929.1\|WP_013002923.1\|5893121_5894429_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.23254e-17
NC_013929.1\|WP_041670932.1\|5891657_5892485_-\|S-methyl-5'-thioadenosine-phosphorylase	gnl\|CDD\|236107	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase.	5.6635e-166
NC_013929.1\|WP_041670930.1\|5890257_5890734_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	1.134e-45
NC_013929.1\|WP_013002930.1\|5903051_5903582_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	2.68981e-62
NC_013929.1\|WP_013002922.1\|5892716_5893052_-\|FmdB-family-transcriptional-regulator	gnl\|CDD\|225210	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown].	2.08644e-26
NC_013929.1\|WP_106437304.1\|5899545_5900154_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|366821	pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family. 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyzes the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin.	1.90226e-51
NC_013929.1\|WP_013002935.1\|5907212_5908016_+\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	6.06082e-142
NC_013929.1\|WP_013002932.1\|5904517_5905873_+\|membrane-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00012694
NC_013929.1\|WP_013002928.1\|5901165_5902488_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.44462e-158
NC_013929.1\|WP_013002934.1\|5906588_5907071_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.71876e-09
NC_013929.1\|WP_013002929.1\|5902572_5903055_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	8.08493e-91
NC_013929.1\|WP_013002927.1\|5900257_5901169_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|133021	cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.	1.18856e-158
NC_013929.1\|WP_037724629.1\|5903599_5904241_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	6.19426e-31
NC_013929.1\|WP_086022965.1\|5894695_5896294_-\|potassium/proton-antiporter	gnl\|CDD\|235410	PRK05326, PRK05326, potassium/proton antiporter.	0

>NC_013929.1|WP_086022965.1|5894695_5896294_-|potassium/proton-antiporter
MTVHDLNQLLLVCSLVLLVAVAAVRISSRSGLPSLLVYLGIGIAMGQDGIGDIHFDNAELTQVIGYAALVVILAEGGLGTKWKEIKPALPAAASLALAGVAVSVGVTAASAHYLIGLEWRQSLIIGAVVSSTDAAAVFSVLRKIPLPARVTGTLEAESGFNDAPVVILVAALSMAGPVEHWYVLIGEITLELAIGAAIGLAVGWLGSWGLRHVALPASGLYPIAVMAIAVTAYAAGAMAHGSGFLAVYLASVVLGNAKLPHWPATRGFAEGVGWIAQIGMFVLLGLLVTPHEMGDDIWPALVIGLVLTMVARPLSVVVALTPFRVPWREQTLLSWAGLRGAVPIILATIPMVSGIEGSRRIFNIVFVLVVVYTLVQGPTLPWLARKLRLGGSGEEAADLGIESAPLERLRGHLLSVAIPDKSRMHGVEVNELRLPPGAAVTLVVRDGTSFVPLPTTVLRRGDELLVVATDPVRDQAERRLRAVGQGGKLAYWLGTGNGNGDEDGEGDVHRGGRGRGGGGGRAGGSGKGGAGR
>NC_013929.1|WP_013002923.1|5893121_5894429_-|MFS-transporter
MASTVTSNTSRPPRTPRTSKTSRPGYGQLLRTPRAWTFLLPGFAARQPFAMLTLSLVLLVQHTTGSYGAAGAVAAATGVSMALFAPYSGRLADRHGQRAVLIPGVLVHGAAGLTLTALALMDAPLWALFVAAVPTGASVPQVGPMVRARWGVKLKGSPLMSTAAAFESVTDELTFVLGPLLATALCTAVHPAAGLLTEAGLTLVGGLLFAAQRATQPEVAPVAHARVERVSALAVPGVRVLIVTFLGIGSVFGGMQVSLAAFSESIGEPGINGVLYGVFAAGNMLAGIVCGAIAWKAAPQRRLLVGYTALALAASALWTADSVVVLAALGLLVGMCIAPALITGYTLVDSLVPSGARTEAFTWLTGAVALGQAAAVTTAGQLEDRLWTGAGFLVPAAGTALALATLFALRTRLVGTPRSRTVARVVGHRVPVTVD
>NC_013929.1|WP_013002922.1|5892716_5893052_-|FmdB-family-transcriptional-regulator
MPTYQYQCTECGEGLEAVQKFTDDALTECPACNGRLKKVFSAVGIVFKGSGFYRNDSRGSSSSSSPATSKSSDAKSSSDSKSASASSSGSSSSDSKSSSAGSSSTSSTSAA
>NC_013929.1|WP_041670932.1|5891657_5892485_-|S-methyl-5'-thioadenosine-phosphorylase
MAEIGVIGGSGFYSFLDDVTEIQVDTPYGPPSDSLFLGEIAGRRVAFLPRHGRGHHLPPHRINYRANLWALRSVGARQVLGPCAVGGLRPEYGPGTLLVPDQLVDRTKSRTQTYFDGLPLPGGAFPNVVHVSLADPYCPAGRKAALDAARGRDWEPVDGGTLVVVEGPRFSTRAESLWHQAQGWSVVGMTGHPEAVLARELELCYSTLTLVTDLDAGAETGEGVSHEEVLRVFAANVDRLRGVLFDAVAALPANDSRDCLCATALGGMDPGFELP
>NC_013929.1|WP_078580347.1|5890836_5891262_-|hypothetical-protein
MRRLARCRRRATAAGLAVTAAALLVAGAGPRESGRVRGHPVADPVPERSAPAERVTAPVRIADAATVRLLRPGDRVDVIAAEESATGAGTARIVARGARVSKVPAADAAESGALVVLTVPRRTAARLAGAGATSRLAVTLW
>NC_013929.1|WP_041670930.1|5890257_5890734_-|large-conductance-mechanosensitive-channel-protein-MscL
MSKQKEPGVWEGFKAFLMRGNVVDLAVAVVIGAAFTNIVNSVVKGVISPLVGAFGTKNLDQYSYCLKDPCEVGTDGTVIDGVSILWGTVLNATLTFLITAAVVYFLMVLPMAKYLARQEARRKAKEGTHEVIELTELEVLKEIRDALVAQRGSGHDRT
>NC_013929.1|WP_013002918.1|5890046_5890229_+|hypothetical-protein
MSTAPAPEPRDPKAALVFDDPFSRPSSDDTDHGWGERPGDGGDSAADLKRFLDEKPPHHL
>NC_013929.1|WP_013002915.1|5887593_5888625_-|P1-family-peptidase
MAVDALTDVAGLRVGHATRVGGGWLTGTTVVLAPVGGAVAAVDVRGGGPGTKETDALDPRNLVQKVEALVLTGGSAYGLDSASGVMAWLEERGRGVRVGRDPAHVVPVVPAACVFDLGRGGDFGARPDAALGRAAVEAADAGGLGAPVAEGCVGAGTGATVGLLKGGIGTASTVLDSGITVAALVVANAAGSVTDPETGVLYGELFQGRAAYPAPEVHASARRRIAEASAQSPPPPMNTTLAVVATDADLTRAQAQKLAGTAHDGIARAVRPVHLLNDGDTVFTLATGTRPLPPQAGPLALNELLAAGADLVTRAIVRAVRAAESVDGPGGTWPSYGELYGGG
>NC_013929.1|WP_013002914.1|5886086_5887304_-|L,D-transpeptidase-family-protein
MTRPKIAVRRALGTCAVLVVGALTLTGCGGDAQADNKSGGKGTSAEDAVARITISAKDGSTGASINATGVKVSGGKLTEVKMTAVESGTAVAGEIAADGRSWKPKEQLERGTKYRISATAKSTAGKTAAANSIFTTVSTANSFIGTYTPDNGTTVGVGMPVSFTFDKAITDKKAVQSHIKVTSSSGQQVVGHWFGAQRLDFRPEEYWKAGSKVTVKLGLDGVEGANGLYGVQDKTVTFTVGRAQVSTVDVNTQTMTVERDGKTLKTVPISAGAAANPTYNGQMVISEKFRQTRMNGSTVGFGGEYDISDVPNAMRLTTSGTFVHGNYWYNRGNPPFGREGTSHGCIGLADAQGANGDTPGKWFFDNSLVGDVVIVKNSPDKTVAPDNGLNGWNMPWSEWTAGDGI
>NC_013929.1|WP_013002913.1|5885170_5885929_-|hypothetical-protein
MSVPYETAAYEPPESPKSPEEHLARLLGRALNSFELPDETLRQLDCALAHDSSLHSAHYSSGLHRATYRHTWLLADGSAVTLWELVHNTALCGDVQHEVYTDEEELRAATARLPLPPDAADFELPAVVELAAFPEPRHEYVPDDSADHARRLLRRAENPDPPGDELATLLLRTAFAHEITQAFGRPHRPARRGRPGFSFSLYEHAFLLTDGQEISLWEVEHTATADGRHMCEVYATEDAARDAMERRAGTLG
>NC_013929.1|WP_106437304.1|5899545_5900154_-|5-formyltetrahydrofolate-cyclo-ligase
MGPEPELSKRMLRRELLLVRNGLTADDVRNTTGALAERALGLPELAHARTVAAYVAVGSEPGTLALLDALRARGVRVLLPVLLPDNDLDWGVYEGGPALARVRHGGGRMELLEPAGERLGPEAVTTADAVLLPGLAVDARGMRLGRGGGSYDRVLARLERSGADPALVVLLYDTEVVERVPEEPHDRPVHAVVTPAGVRRFR
>NC_013929.1|WP_013002927.1|5900257_5901169_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MSEANPRISKAVIPAAGLGTRFLPATKATPKEMLPVVDKPAIQYVVEEAASAGLDDVLMITGRNKRPLEDHFDRNYELESALQKKGDAHRLAKVQESSDLATMHYVRQGDPRGLGHAVLCAAPHVGDEPFAVLLGDDLIDPRDPLLKRMVQVQEEHGGSVIALMEVAPEQIHLYGCAAVEATVDGDVVKVTGMVEKPEAADAPSNYAIIGRYVLAPQIFEVLSRTEPGRGGEIQLTDALQQLAADEKVGGPVHGVVFKGRRYDTGDRGDYLRAIVRLACEREDLGPDFRTWLRSYVAEEMEPQ
>NC_013929.1|WP_013002928.1|5901165_5902488_+|molybdopterin-molybdotransferase-MoeA
MSTAATRTTDPDHLWSVTEHLEDILATVRPLEPIELQLLDAQGCVLVDDVTVPISLPPFDNSSMDGYAVRVADIAGASEEFPAVLTVIGDVAAGQAEQPHVGPGEAARIMTGAPLPPGAEAVVPVEWTDGGLGEGPVSGMRARSANPEGATGQVAVHRPAEARAHVRAQGSDVKAGERALAAGTILGPPQLGLLAAIGYASVCVHPRPRVVVLSTGSELVPPGETPATGQIHDSNSFALTAAARDAGAIAYRVGAVADDAETLRTTIEDQLVRADLVVTTGGVSVGAYDVVKEALESVGDEDEDGAGIDFRKLAMQPGKPQGFGTIGPDHTPLLALPGNPVSSYVSFEIFVRPAIRTLMGLPDVHRPTTTASLRAPKALTSPAGRRQYLRGTYADGEVTPVGGAGSHLVAALAHADALIVIPEGTESVEPAAEVEVVLLG
>NC_013929.1|WP_013002929.1|5902572_5903055_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSTPHDRLTHIDEAGAARMVDVSGKDVTARTARASGRVLVSPTVVELLRGEGVPKGDALATARIAGIMGAKRTPDLIPLCHPLAVSGVKVDLSVADDAVEIHATVKTTDRTGVEMEALTAVSVAALTVIDMVKAVDKGAVITDVRVEEKTGGKSGDWNRT
>NC_013929.1|WP_013002930.1|5903051_5903582_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MTPPAEDTGRAPHRALVVTASNRAAAGVYEDRGGPLIAEGLRTFGFAVDGPRVVPDGDPVEAALRAGVAAGYDVIVTTGGTGISPTDRTPEATRAVLDHEVPGIPEAIRAYGRDKVPTAALSRGLAGVAGRTLIVNLPGSTGGVRDGLAVLEPLLTHAVDQLRGGDHPASGHGGAS
>NC_013929.1|WP_037724629.1|5903599_5904241_+|GNAT-family-N-acetyltransferase
MALVDGEVVLRPIKMRDQRAWREVNRRNRDWLRPWEATIPPPTPSGPIAHRPTYRQMVRHLRSEANAGRMLPFVIEYQGRLVGQLTVAGITWGSMCSGHVGYWVDESVAGRGVMPTAVALVVDHCFRTVGLHRIEVCIRPENRPSRRVVEKLGFREEGLRPRYLHIDGAWRDHLVFALTAEEVPEGLLGRWQRERARNARNAGSDAGTTGPPP
>NC_013929.1|WP_013002932.1|5904517_5905873_+|membrane-protein
MSSSGLIYAVIVGAWAAYLVPMWLRRQDELNEARPTERFSTAIRLLSGRAGMERRYAKDLRARSTEEGEPSARPDGVTDSVDVRAFAMPPHREHTKAQLPVERGEPEPQGQQPGKPAAQATAPAPSKPLPQQGGAPQTKQPGTPSGKQGTAHPSGAARPSAPARTKRPDKQTAGARRDTSAEAKARAQRSKVLARRRRTTVMLFLAFTLGAVVAAVGGLAFLWAPAVPAVLLSVYIAHLRRQELKRFAYTMDRRQAEVAAQRLRERQPQRRRPAPDPVDTDEPEDGPESEENRAELTALAADRRALVEQTDHAEWVDQQRERQRRPGQGDSWDPVPVPLPTYVTAPVAPRATSGVDLGAPDAWSSARSSAADPHGTPGAPSHPAPATGRETEGERGTEKGAADAGAGEADASDDGRCDARRAASARRSRERGRTPLFDQYEDGDRPRAANE
>NC_013929.1|WP_013002933.1|5906121_5906535_-|hypothetical-protein
MPVKKNTRLRRLVVGDTTWHWTVRQFPHRGAHDHCRLKLSLYPQGARRRRLVLLFSPSEGRYVSNCYFDAGDLYRLSNRTYLNLYEPGTVRRLLDAAALNLDLDPSAQEVVVDGWPYFDAITEPAQAPSAGADGTSS
>NC_013929.1|WP_013002934.1|5906588_5907071_-|GNAT-family-N-acetyltransferase
MIIRPVPFDHPDAVKLNDEVQAEYSVRYGDDGDATHMDPAHFLPPRGLYLIAYDEHGRALATGGWRGQDANDEGNRDGDAEIKRMYVTPEARGLGLARRILAALESDARAAGRARMVLETGTKQPEAVSLYTSSGYEPCGKFGYYRFHELSLCFAKDLQD
>NC_013929.1|WP_013002935.1|5907212_5908016_+|exodeoxyribonuclease-III
MLTVTSVNVNGLRAAAKKGFVEWLAGTSADVVCLQEVRAEPEQLPEGVRQPEGWHVVHAPAAAKGRAGVSLYSRREPDRVRIGFGSAEFDGSGRYVEADLPGVTVASLYLPSGEVGTERQDEKVRFMGEFLPYLKDLRERAAADGREVVVCGDWNIAHQQADLKNWRANQKNSGFLPEEREWLGRVLDEGDGGYVDVVRALHPEVEGPYSWWSYRGRAFERDTGWRIDLAVATPGLASKAVKAFVERAASHDERWSDHAPVTVVLGM

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Crispr_ID: NC_013929_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_8

6021070-6021159

Unclear

Consensus_repeat	Method
GCAGTCGTACGGGTATCCGCAGGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_013929_8

>merge|NC_013929|8|6021070-6021159|CRISPRCasFinder
GCAGTCGTACGGGTATCCGCAGGGGCCGGGTGGTCCGCAGGGTCCGGGGACCCCGCCGCCCGGTGCGCAGTCGTACGGGTATCCGCAGGG

>NC_013929|8|8|6021070-6021159|CRISPRCasFinder
GCAGTCGTACGGGTATCCGCAGGG	GCCGGGTGGTCCGCAGGGTCCGGGGACCCCGCCGCCCGGTGC
GCAGTCGTACGGGTATCCGCAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013003039.1\|6028466_6029255_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_013929.1\|WP_013003026.1\|6011605_6012208_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_013929.1\|WP_013003030.1\|6016108_6017452_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_013929.1\|WP_041669650.1\|6031931_6033392_-\|DUF2079-domain-containing-protein	unknown	unknown	gnl\|CDD\|370724
NC_013929.1\|WP_013003029.1\|6014137_6015586_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184641
NC_013929.1\|WP_013003042.1\|6033784_6037318_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NC_013929.1\|WP_013003043.1\|6037455_6038178_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NC_013929.1\|WP_013003037.1\|6025859_6026327_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NC_013929.1\|WP_173403007.1\|6026497_6028015_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NC_013929.1\|WP_013003044.1\|6038211_6038949_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013003033.1\|6019065_6020076_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379604
NC_013929.1\|WP_013003028.1\|6013052_6014027_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|179535
NC_013929.1\|WP_013003036.1\|6024204_6025863_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|271374
NC_013929.1\|WP_037724982.1\|6012280_6012871_-\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NC_013929.1\|WP_013003031.1\|6017524_6018019_-\|SUKH-3-domain-containing-protein	unknown	unknown	gnl\|CDD\|379608
NC_013929.1\|WP_013003024.1\|6008071_6010804_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NC_013929.1\|WP_037724984.1\|6010993_6011527_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013003032.1\|6018242_6018743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373065
NC_013929.1\|WP_013003035.1\|6023075_6023951_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NC_013929.1\|WP_013003040.1\|6029251_6031831_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013003026.1\|6011605_6012208_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.29925e-95
NC_013929.1\|WP_013003036.1\|6024204_6025863_-\|cation-acetate-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	9.94615e-136
NC_013929.1\|WP_013003030.1\|6016108_6017452_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.6138e-35
NC_013929.1\|WP_041669650.1\|6031931_6033392_-\|DUF2079-domain-containing-protein	gnl\|CDD\|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.01331e-47
NC_013929.1\|WP_013003029.1\|6014137_6015586_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184641	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NC_013929.1\|WP_013003042.1\|6033784_6037318_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_013929.1\|WP_013003043.1\|6037455_6038178_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	6.12891e-30
NC_013929.1\|WP_013003037.1\|6025859_6026327_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	9.97288e-24
NC_013929.1\|WP_013003039.1\|6028466_6029255_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.11864e-110
NC_013929.1\|WP_013003033.1\|6019065_6020076_+\|HNH-endonuclease	gnl\|CDD\|379604	pfam14414, WHH, A nuclease of the HNH/ENDO VII superfamily with conserved WHH. WHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif WHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. WHH is the shortest version of HNH nuclease families. Like AHH and LHH, the WHH nuclease contains 4 conserved histidines of which the first one is predicted to bind a metal-ion and other three ones are involved in activation of water molecule for hydrolysis.	2.51986e-12
NC_013929.1\|WP_013003028.1\|6013052_6014027_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|179535	PRK03092, PRK03092, ribose-phosphate diphosphokinase.	0
NC_013929.1\|WP_173403007.1\|6026497_6028015_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.45522e-61
NC_013929.1\|WP_037724982.1\|6012280_6012871_-\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.79977e-69
NC_013929.1\|WP_013003031.1\|6017524_6018019_-\|SUKH-3-domain-containing-protein	gnl\|CDD\|379608	pfam14433, SUKH-3, SUKH-3 immunity protein. This family belongs to the SUKH superfamily and functions as immunity proteins in bacterial toxin systems.	1.81407e-59
NC_013929.1\|WP_013003024.1\|6008071_6010804_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NC_013929.1\|WP_013003035.1\|6023075_6023951_+\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	2.04833e-05
NC_013929.1\|WP_013003032.1\|6018242_6018743_-\|hypothetical-protein	gnl\|CDD\|373065	pfam14431, YwqJ-deaminase, YwqJ-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Bacillus YwqJ. Members of this family are present in a wide phyletic range of bacteria and a few basidiomycetes. Bacterial versions are predicted to function as toxins in bacterial polymorphic toxin systems.	7.66861e-14
NC_013929.1\|WP_013003040.1\|6029251_6031831_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.3286e-26

>NC_013929.1|WP_013003033.1|6019065_6020076_+|HNH-endonuclease
MTTGRLGQQAAPPNAAYAGQVVQFPDPVRAARHPRGVRVDAHGYPDFSPYARAAAEIADPPEGFGVDELRLTDYVSANAALAATGHELWDTIPPVATPHGWTWHHAPGGRRLELVPVEVKALLRHHGGIATARVDQHKRGTRPLQETRPAHFGLPKSSAVAVTEAQVQGVEEDLGYRLPGAYRSFLKAAGGCAPVGAALDAELGLLVDQPFFTVRDEAAVNDLVYVNKCLRDHLTKDYLAVAFAQGGILAVKVKGDRIGSVWFCAYDDARDVDPSWPPAERVERLLLPAGADFDAFLARLAGNPPELETVANLMVDGGFAQAVPVAAGAAASSVGE
>NC_013929.1|WP_013003032.1|6018242_6018743_-|hypothetical-protein
MSATQAGPSGDPRIGWSTAEQPHAPALLHRRDGILPTVAAALSVRGETLTGTAARGDHAPPLHALVQEFLDSLATAQRDRFTGRCAEAILISRHITAADAARSRRAARRPMSNGEARKALKQAKLTTRHIREDGDPLHGAFATPCRSCAALSAHFGVRVVDPAQDN
>NC_013929.1|WP_013003031.1|6017524_6018019_-|SUKH-3-domain-containing-protein
MHTDRTSTTRFAVAVDAALRTAGWLPGRWDIKQAEIWADALREHTSPAGHRHAVFPAAVEAWAEFGGLRLTAQGPGRRLAPADLHLDPLHGLHMARTLGDLGRALDTEVCPLGHETATRSLIAIDAEGRTYALDHTGDWYLGPTIDAALTTLLTGTDPTRLTAN
>NC_013929.1|WP_013003030.1|6016108_6017452_+|two-component-sensor-histidine-kinase
MTTTGEDHTAAGTGDGAGPWWWERRRGAFLDGGLALVSAVECAVEGVTFARNAGLPEAVGVAFGALAGSVLLVRRMWPVAVVLVFIAVAPAQMGYLMGLVGLYTLAASEAPRRIIGALSGMAFAGVFIVWFVQATQSDLRGDGAVGGGEAFAPFLASTMAIGLTAPPVLLGLYVGARRRLMESLRERADSLERELQLLAERAEERAEWARGEERTRIAREMHDVVAHRVSLMVVHAAALQAVARKDPEKAVRNAALVGDMGRQALTELREMLGVLRSGEGFSSMARVEPASAPVPLAAVGAAAAAAASRAEDEAGEGPSLAELEALVGQSAAAGMVVELSVEGEVRVYAAEVEQTAYRVVQEALTNVHKHAAGAKTHVRLAHRAAEIAMQVENGAPPVPGAAGAARLPSGGNGLLGMKERVAELGGVFVSGPTDAGGFRVSAVIPAS
>NC_013929.1|WP_013003029.1|6014137_6015586_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSATRPAAVVVLAAGEGTRMKSATPKVLHSICGRSLVGHVLAAARELEPEHLVVVVGHAREKVTAHLAEADPGVRTAVQAEQNGTGHAVRMGLEELGGVVDGTVVVVCGDTPLLTGATLRALAATHTADGNAVTVLTAEVPDATGYGRIVRDGASGAVTAIVEHKDATESQRAIREINSGVFAFDGQLLADALGKVRTDNSQGEEYLTDVLGILREAGHRVGASVTGDHREIAGINNRVQLSEARRILNDRLLTEAMLAGVTVIDPATTWVDVTVTFEQDALIHPGTQLLGATHLGEGAEVGPNTRLKDTLVGAGARVDNTVADGAEVGPQASVGPFAYMRPGTRLGPKSKLGTYVETKNATVGEGTKIPHLSYVGDATIGEYSNIGAASVFVNYDGESKHHTTVGSHCKTGSDNMFVAPVTVGDGAYTAAGSVITKDVPPGSLAVARGQQRNIEGWVARKRPGSAAAKAAEAASREDESAS
>NC_013929.1|WP_013003028.1|6013052_6014027_-|ribose-phosphate-diphosphokinase
MTGIKTTGEKKMMFFSGRAHPELAEEIAQQLGVGVVPTKAFDFANGEIYVRYQESARGADCFLIQSHTAPINKWVMEQLIMIDALKRASARSITVIVPFYGYARQDKKHRGREPISARLIADLMKTAGADRILAVDLHTDQIQGFFDGPVDHLFALPLLADYVGAKVDRDKLTVVSPDAGRVRVADRWCDRLGAPLAIVHKRRDKDVANQVTVHEVVGEVKGRVCVLVDDMIDTGGTICAAADALFAHGAEDVIVTATHGVLSGPAADRLKNSKVSEFVFTNSLPTPNELELDKITVLSIAPTIASAVREVFEDGSVTSLFDEQ
>NC_013929.1|WP_037724982.1|6012280_6012871_-|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MAEVKLEAETRTEFGKGAARRIRRASKVPAVVYGHGADPVHITLPGHALQLALRTPNVLLSLDIDGKTQLAIPKAVQRDAIKGFLDHVDLLLVKRGEKVNVEVYVHTEGDLAPGAYLLEHVLSTLTVEAEATHIPESVTVSIEGLEAGASILAKDIPLPKGTTLAIDEDAVVLQVLAAQAEEPSEDGAEGDEAAEA
>NC_013929.1|WP_013003026.1|6011605_6012208_-|aminoacyl-tRNA-hydrolase
MHVTTDPSAPWLIAGLGNPGPEYAANRHNVGFMVADLLAERIGGRFKRAGKAQAQVVEGRIGPPGPANRRVILAKPMSFMNLSGGPVTALRDFYKVPVANIVAIHDELDIDYGVLRLKLGGGDNGHNGLKSMTKAMGSDYHRVRFGIGRPPGRMQVADFVLKDFSATERKELDYFVDRAADAVECLVIEGLERAQGTYNS
>NC_013929.1|WP_037724984.1|6010993_6011527_-|hypothetical-protein
MIPAMPATKAPAHRSPRRRRAGGGGTSVALRYGRLAATGVIAVVLLIAGVWGSWDCAQHVMLSKGREQGTMTVSRCAGETCWGPYEPVSAGSRARGRVDIERSVAVETGETYTVVVKPGSRDVVRTGPAGLLHAWVPLGGALLLAAVVVAGGLRMVRSAWVLGGLGFALITAAWVAL
>NC_013929.1|WP_013003024.1|6008071_6010804_+|phosphoenolpyruvate-carboxylase
MSSADDQTTTVSSELRADIRRLGDLLGETLVRQEGPDLLELVERVRSLTREDGEAAADLLRGTELETAAKLVRAFSTYFHLANVTEQVHRGRELRARRAAEGGLLARTADRLKDADPEHVRETVGNLNVRPVFTAHPTEAARRSVLNKLRRIAALLETPVIDSDRRRHDTRLAENIDLVWQTDELRVVRPEPADEARNAIYYLDELHAGAVGDVLEDLTAELERVGVTIPDATRPLTFGTWIGGDRDGNPNVTPQVTWDVLILQHEHGINDALELIDELRGFLSNSIRYTGATEDLLTSLRADLEALPEISPRYKRLNAEEPYRLKATCIRQKLENTKQRLAKGIPHEDGRDYLGTGELLKDLTLIQTSLREHRGGLFADGRMNRTIRTLAAFGLQLATMDVREHADAHHHALGQLFDRLGEESWRYEDMPREYRHKLLARELRSRRPLGPTPAPLDAAGAKTLGVFETVKKALAVFGPEVIESYIISMCQGADDVFAATVLAREAGLVDLHAGWARIGIVPLLETTDELKSADTILEEMLADPSYRRLVALRGDVQEVMLGYSDSSKFGGITTSQWEIHRAQRRLRDVAHRYGVRLRLFHGRGGTVGRGGGPSHDAILAQPWGTLEGEIKVTEQGEVISDKYLVPSLARENLELTVAATLQASALHTSPRQSVEALARWDAAMDLVSDAAHAAYRRLVEDPDLPTYFLASTPVDQLADLHLGSRPSRRPGSGVSLDGLRAIPWVFGWTQSRQIVPGWFGVGSGLKALREAGLDTVLDEMHEQWHFFRNFLSNVEMTLAKTDLRIAQHYVDTLVPDELKHVFDTIRTEHELTVREVLRVTGEEKLLDANPVLQQTFSIRDAYLDPISYLQVALLKRQRDAAAAGEEADPLLARALLLTVNGVAAGLRNTG
>NC_013929.1|WP_013003035.1|6023075_6023951_+|hypothetical-protein
MSSAPTAPHDFEFDVVRRGYRTDQVDARTAALSRDRDAAWERAARLTVLAREMGIELDRLHETVAGLTPQTYEALGEGARQLFSLGVEEAAAVRERGREGARRIVAETEEAGLRLREAAQAYADGVRGEAEERARQVVLAARAEADELRIEARRGVKEGRGEALAALREVRERTEGMLTELAKEYDERVAGIEREAAEREAAFDAGLAERVARAEAALAEAEREFEAAEADAVRMQDDAEERAAEALAEARRREEWVVRETERVLREHGERWDEVRAQMDCIRDSLSALTD
>NC_013929.1|WP_013003036.1|6024204_6025863_-|cation-acetate-symporter
MTTLTPLTAAAGGLAEFSGSARAMSLVGFTAVATITLLLCVMTGPDRDDLDEFYTGYSSLSPLRNGLAIAGDYISAATVLGTGGVIALFGYDGVVLALSTALSLMLLMFLLAEPLRNAGRFTMGDALARRMPGRSVRIVACVVTIAALMPMMLVQLAGTGDLLAFVLGFSSDSLKTGVVVVVGALMIGYAAIGGMKGTALIQIIKIVMLLGSGALISVLILDKFGWDPGLLLGTAAERSGIGTGYLRSGLQFSGGPHPELDMISAQLTVVLGGACLPHVTMRMYTANSARQVRRSLSWAVPSVALFVLIISVIGFGATALIGREAIAGADPQGNTAYLLGSMAAFGTEVSTAETLLFTTVTTAVFLTLLASVAGMILACANSLAHDVFAACAPRPLTPRREMTVARLSAGAVGVTAILLATLVQHRNLQPLVTLSFCLGASAIAPALVYGLFWRRYTRTGLMWTLVGGSLSVLVLMTGTNLVSGSPYSAFPRADFNWFPFTTTGLVSIPLGFLAGWLGTVASGGERAGEQRRQYEAVEGWILAGAARRDGGA
>NC_013929.1|WP_013003037.1|6025859_6026327_-|DUF485-domain-containing-protein
MTDAFSSPPHQPPYRPPHSPHPPHTSSPSYRTYPWDPQEPAAAPAPRSARTHPPLGHHSDLRVLRSAYRWQRRVATLAALGYFVLFLVLSAFAPSFMTSEVSGGLSTGLLLGLLQVPVTCLAIWLYEHTARHRVDPLADRIRELAAADARRGAAR
>NC_013929.1|WP_173403007.1|6026497_6028015_-|MFS-transporter
MDDIRPVLRDSAQRTGPDRRGAVTAALMLAMGLAALDSTIVSTAVPQIVADLGGFSVFSWLFSGYLLAVTVTLPVYGKLSDTFGRKPVLVVGAVLFLLGSLLCALAWNMGSLIAFRVVQGLGGGALQGTVQTLAADLYPLEERPRIQARLSTVWAVSAVAGPGVGGVLAAYADWRWIFLVNLPLGAAALWLLVRHLHEPRRESTGRPRVDWAGALTVFAGGGALLLALVQGGVAWAWLSPPSLTLLGTGAALIALLVLIERRAAEPIIPGWVWHRRTIASVNLALGALGLLMVAPTVFLATYAQSVLGLAPVAAGFVVSVWTLSWPVSAALSQHVYRRIGFRDTALLGIAAAAALLFAFPLLPYPGEAWQPVLLMLLLGAALGLFQLPLIIGVQSTVAWEERGTATASILFCRQTGQTLGAAAFGAVANGVLASRLGGAGDLDSVTRSLGAGTAAEPVRRALADAVHAVYLGAACAAAVAFLVLLTAPRRFPVLAADSPDPRSKI
>NC_013929.1|WP_013003039.1|6028466_6029255_+|ABC-transporter-ATP-binding-protein
MTSAVTITRHGGTGGTTAVAARARQVVKAYGSGETRVVALDHVDVDIARGRFTAIMGPSGSGKSTLMHCLAGLDTVSSGQIYLDDTEITGLKDKKLTQLRRDRIGFIFQAFNLLPTLNAIENITLPMDIAGRKPNKEWLGRVVDTVGLSDRLKHRPTQLSGGQQQRVAVARALAARPEIIFGDEPTGNLDSRAGAEVLGFLRRSVDELGQTIVMVTHDPVAASYADRVLYLADGRIVDEMLKPTADTVLDRMKDFDARGRTS
>NC_013929.1|WP_013003040.1|6029251_6031831_+|FtsX-like-permease-family-protein
MTVMKTSLRNFFAHKGRMALSAIAVMLSVAFVTGTLVFTDTMGTTFDKLFAATSSDVTVSAKGASDSGETQSDTGKPPVMPASVVDKVGGADGVKSAEGTVFSTSVTVVDADKDSLSPTSGAPTIVGNWNANDARTMKISSGDAPRGPDQIMVDADTADKHDLKLGDGIGVISAVGTHEAKISGIADFQVTNPGAAIFYLDTATAQKTLVGETGVYTNVNITAAAGFTDAQVKKNVSAELGGGYKVQTAKEVADANAKDVGEFMGVMKYAMLGFAGIAFLVGIFLIINTFSMLVAQRTREIGLMRAIGSSRGQVNRSVLVEALLLGVFGSVLGVAGGVGLAIGLMKLMSATGMNLSTDDLTIAWTTPAVGLLLGIVVTVLAAYVPARRAGKVSPMAALRDAGAPLDAKAGLVRAVIGLLLTGAGGYCLYLASAADKASEGSMWLGGGVVLSLIGFVVIGPLLAGAVVRVLGAVVLRAFGPVGRMAERNALRNPRRTGATGAALMIGLALVACLSVVGSSMVASATEQLDKTVGTDFIIQSDTGQLITPQAVEAARSAKGIESLTEYKWTQADFTTPDGKTLKDTAITAADPSYATDLATEVVAGKLPDAYKRDSMSVHEKFAKDHDIELGSKIAVAFKDGRTADLTVRAITSSDVVIDAGAMYTSIDTMARYVPADRMPLDQLLFASAKEGQDAAAYTSLKDALHDYPQYEVRDQTDYKEALKGQIDQLLNMIYGLLALAIIVAILGVVNTLALSVVERTREIGLMRAIGLSRRQLRRMIRLESVVIALFGALLGLGLGMGWGATAQQLLALEGLNVLDIPWPTIIGVFIGSAFVGLFAALVPAFRAGRMNVLNAIATE
>NC_013929.1|WP_041669650.1|6031931_6033392_-|DUF2079-domain-containing-protein
MASSAPSTESSGPALIPGPVAAVAPPRGRRLSLAGREPYLLAFLLFAAYATVSVGRYLRMGTRSYDLGIYEQTVRAYAHFQAPIAELKGPGYNVLGDHFSPVTMLLAPFYRLFPTSVTLLVAQAALFALSAVPVTRAATRALGRARGLALGVAYGLSWGLQNAVDFDFHEICFAVPLIAFSLEALLARRWRAALLWGLPLVLVKEDQGLTLAVVAAVVALRARRHGAPRVVPYALAVAVFGALATLLAFTVLIPAFNTAGSSDYLAKVGGGGPLDGLDVKLRTVLWLLIPTSGLLALRSPLVLAVLPTVGWRFVASDHNYWGTAWHYSAVLMPMLFLALVDALPGARRSLRPWLRSYALHLPAAVLAASVALTPSLPLGTLTEGSAYRVPAEVGAVEKLLGTVPDGATVEVNIGPISRLTSRCRVFWIGRTGGLAPDYIAFNNRTGWVKDVPAYARQLHPRDTYVLRGVIQGFVLLKRTSPERGAS
>NC_013929.1|WP_013003042.1|6033784_6037318_+|transcription-repair-coupling-factor
MSLHGLLDAVVKDAPLAEAIRAASDGHRSHIDLVGPPAARPFAVAALARDAGRPVLAVTATGREAEDLAAALRSLLPPDGVVEYPAWETLPHERLSPRSDTVGRRLAVLRRLTHPRPDDPETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGGTADLNRTVEALAAAAYARVELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELLLTDDVRARARALAERHPELAELLDKIAEGIAVEGMESLAPVLVDDMELLIDVLPKGAMAIVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRSIADVRDRARELDMMWWSVSPFAADEELDSDTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVFVTEAHGPAARTVEVLGGEGVPARLEAELGEIAPSVVHVACGSIDYGFVDPALKLAVLTETDLSGQKAAGKDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKGTLEGLREGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFYIHNRVESIDRAASRLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLESGGIEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASVNTEADIAAVREELVDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAAHQVLVPRPKTAKVGGKPLLGRDLLGWTGEFLASILGS
>NC_013929.1|WP_013003043.1|6037455_6038178_+|HNH-endonuclease
MVRLRGGVAVVALVLAAATGCELDGTGGSAGPQENPAGGGGAAYAAAEALTVKGRAPKNDYDRDEFGSAWADTDSNRCDTRDDILKRDLDDVKFRDGDCTVASGMLDPDPYTGKDVPYVRGRSKVDVDHVVALSDAWQKGAQKWDDSKRIALANDPLNLLAVDSGTNRGKGDGDTATWLPPNKAYRCTYVAAQVAVKTKYGLWVTSAEQAAMKRVLRTCPEQKLPTGGNPTKAPARFHAG
>NC_013929.1|WP_013003044.1|6038211_6038949_-|hypothetical-protein
MRRTALAALCIAAAATFSLTGCLPGEDKADGPFAGLTGGEIADKAVKATSGADSLRMKGEIQDESAGGTVRMDMAMNRKGECAGTMSMGGEGQAELIKVGDTLYMKYDEAFLRAQSKDSSKEEADMVVDMLAGKWTKTSATSADSKDMASFCDLDTVLADFEDVNSDATRGKTAEVDGTPAIVLSEKDGKDSYTLYVATKGEPYLLRVVSKSAKEPGDLVFTDFDKPVPAKAPKGKVIDMDKDFG

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Crispr_ID: NC_013929_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_9

6205581-6205682

Orphan

Consensus_repeat	Method
GCTCGCGCCGTTCCCCGCGCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_9

>merge|NC_013929|9|6205581-6205682|CRISPRCasFinder
GCTCGCGCCGTTCCCCGCGCCCCTGTCGGGCCTGCGGCCCTCCTTGGGGGTGTGGGCAGCGCCCCGCTCGTGGGGGTTGCTCGCGCAGTTCCCCGCGCCCCT

>NC_013929|9|9|6205581-6205682|CRISPRCasFinder
GCTCGCGCCGTTCCCCGCGCCCCT	GTCGGGCCTGCGGCCCTCCTTGGGGGTGTGGGCAGCGCCCCGCTCGTGGGGGTT
GCTCGCGCAGTTCCCCGCGCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013003159.1\|6190282_6191875_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_013929.1\|WP_173403008.1\|6218431_6219571_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NC_013929.1\|WP_013003172.1\|6213771_6214878_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_013929.1\|WP_013003168.1\|6205793_6209648_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NC_013929.1\|WP_013003164.1\|6199153_6201385_-\|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|367953
NC_013929.1\|WP_013003170.1\|6210198_6211944_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_013929.1\|WP_013003162.1\|6194605_6196846_-\|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|367953
NC_013929.1\|WP_173403009.1\|6219727_6220186_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NC_013929.1\|WP_013003166.1\|6202531_6203821_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_013929.1\|WP_013003163.1\|6196851_6199044_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NC_013929.1\|WP_013003160.1\|6192140_6192659_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013929.1\|WP_005486852.1\|6192788_6193202_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NC_013929.1\|WP_005486827.1\|6216606_6217296_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NC_013929.1\|WP_013003174.1\|6217332_6218250_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NC_013929.1\|WP_005486830.1\|6216171_6216363_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013003161.1\|6193280_6194609_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_037729672.1\|6203906_6205322_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NC_013929.1\|WP_013003171.1\|6212291_6213530_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_013929.1\|WP_013003173.1\|6215186_6216086_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240430
NC_013929.1\|WP_013003165.1\|6201620_6202535_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013003159.1\|6190282_6191875_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.17886e-24
NC_013929.1\|WP_173403008.1\|6218431_6219571_+\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	3.20955e-69
NC_013929.1\|WP_013003172.1\|6213771_6214878_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_013929.1\|WP_013003168.1\|6205793_6209648_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	6.93831e-21
NC_013929.1\|WP_013003164.1\|6199153_6201385_-\|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.10744e-138
NC_013929.1\|WP_013003170.1\|6210198_6211944_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	6.87509e-103
NC_013929.1\|WP_013003162.1\|6194605_6196846_-\|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.03121e-127
NC_013929.1\|WP_013003166.1\|6202531_6203821_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.06252e-36
NC_013929.1\|WP_013003163.1\|6196851_6199044_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	2.70224e-107
NC_013929.1\|WP_005486852.1\|6192788_6193202_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.28882e-69
NC_013929.1\|WP_005486827.1\|6216606_6217296_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	2.44065e-122
NC_013929.1\|WP_013003174.1\|6217332_6218250_+\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	4.89661e-55
NC_013929.1\|WP_173403009.1\|6219727_6220186_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	7.51396e-85
NC_013929.1\|WP_013003160.1\|6192140_6192659_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.57519e-23
NC_013929.1\|WP_037729672.1\|6203906_6205322_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	3.2893e-33
NC_013929.1\|WP_013003171.1\|6212291_6213530_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.58048e-84
NC_013929.1\|WP_013003173.1\|6215186_6216086_+\|hypothetical-protein	gnl\|CDD\|240430	PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.	2.69493e-08
NC_013929.1\|WP_013003165.1\|6201620_6202535_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.52785e-76

>NC_013929.1|WP_037729672.1|6203906_6205322_-|carbohydrate-ABC-transporter-substrate-binding-protein
MRLLGHGVRTSKPASAGGPTRPPTARALAALAAGVLALSLTACGGDDDGGDKGDNGSEGGNEATVRLPKLDGQKLEVAAVFTGPELDNFQKVLDEFEKRTGASVTFVPTGNNTSTFLGTKIEGGKPPDVAFLPQVGVLHQFAEKGWVKPLGSEAQAQLDKNFSDGWKDLGAYEGKQYGVYAKAANKSLVWYNTAAFEAAGITEEPKTWEEFLQTAQTLSDAGSPAVSIGGADGWTLTDWFENVYLSQAGPEKYDQLAKHEIKWTDPSVKDALTTLAQLWGKDDLIAGGASGALQTEYPKSITQTFGGDTPAGMVFEGDFVAVTINGDTDAKIGTDAKVFPFPAVGDDSPVVTGGDAAVALKDGKGAQALLTFLASTDAAEIWAAQGGFLSPNKEMDEASYKDDATRKIAKALLAAGDDFRFDMSDQAPAAFGGTQGVGEWKDLQDFLKDPDDVAGAQKQLEADAAKAYGNG
>NC_013929.1|WP_013003166.1|6202531_6203821_-|sugar-ABC-transporter-permease
MTGTRLWVAVLFLLPALVLLGALVVYPIGYSVWRSLFDADGSGFVGLDNYAEIFSDDSTLVAVRNTAIWVAVAPALVTALGLIFAVLTERIRWGTAFKLVVFMPMAISMLAAGIIFRLVYEQDPDQGVANAVVTSVHDVFVDESVYPKARPNAQVSDLRASGGGSFTTEGTVRAGTPALLPLVGIAPNRLPGDAQDAENAGTGKDDGVTGTVWLDFRLGGGGEKGAVDPGEKALKGVKVEAVKGGEVVATATSGSDGTFRLPESADGSRLRLPGSNFAAPYNGIDWLGPTLVTPAVIGSYVWMWAGFAMVLIAAGLAGVDRNLLEAARVDGANEWQVFRKVTVPLLAPVLVVVLVTLMINVMKVFDLVYIIAPQPTQDEANVLALQLYLVSYGGGGDFGLGSAIGVVLLLLVLPVMWVNIRRLRKERQR
>NC_013929.1|WP_013003165.1|6201620_6202535_-|carbohydrate-ABC-transporter-permease
MTTVEERPGAAGTAAPAGTAGRRSVAARLASGAAGGALRAFLLLVALFWLVPTFGLLVSSFRDPTDISASGWWTVFSAPAQLTTESYRSLLENDGITDALFNTVWITVPATLLVVLIGAMAGYAFAWLDFKGRDWWFMAVVGLLVVPVQVALIPLSGLFRDLGIFGDIIGVVLFHVGFGLPFAIFLLRNFFAEIPRELLEAARLDGAGEVRLFVTVVLPLAAPALASLGIFQFLWVWNDMLVALVFSSSDSQPLTVALQQQVRQFGSNIEVLAPGAFISMVIPLAVFFAFQRQFVSGVMAGAVK
>NC_013929.1|WP_013003164.1|6199153_6201385_-|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase
MPRFSVIVPAYKVQAYLQECLDSVLSQSFTDLELIVVDDASPDNCGAIADEAAARDPRVRSTVRLRENAGPGAARNKGMEYARGDYLLFLDGDDTFTPGALQAIADRVKETGEPDVLVHDFARVSWSGESVRDAGAPRLTERGPAPFRLDDRPGLLHVRPVVWNKAYKREFVEDHDFRLPPGVYEDTAWTYPVLMAAESVATLDRVCVHHRRRRHGSLLGAVTRAHFDVFAQYDRVFAYLDERPELAQWRPVLFRLMTDHLTSVLSARHRLPREARAEFVRTVRAHCARYRTPGAPVRARARLRRALLLLGGQRLHRALRAGARLVRGAGRLLRGLAGLFRTAGLRLHYRLQRLLPLRADRAVFAAYDGRGYECGPAALENAFRTYVPHMRTSWAARPEHHHTLPVAARRVLPGSMAYWTALARSTYLVSNVDFDRRLVKRRGQVLLQTRHGTPLKHMGLDLQDRPAAARGTDFGAALRDSDRWDYVLSGNRHSTLVWERVHPSPYTTLEYGSPRNDVFLRANSTDVARVREQLGIPEGAVAVLYAPTHRDYRHSQRTHLDLERVLRKLGPRFVVLARAHHGYGSPLTDLAHGRLLDVTGYPSVENLCLASDALVTDYSSLMFDYANLDRPIVIHAEDWEAYEAARGTYFDLRSFPPGAVARSEDELIDIFATGHWRGSRSAQLRAAFRERFCPYDDGRAAERVVRRVVLGEAAPPDFVPLAERHPVPSAAAARPAADGALGT
>NC_013929.1|WP_013003163.1|6196851_6199044_-|CDP-glycerol-glycerophosphotransferase-family-protein
MPRFSIIVPTHGVEGRLPLALDSVLTQPFGDFELIPVHDAPGSPAGAVGSAYAGRDSRVVPVESPPSGGLSAARNAGMAAAHGTYVLFLDGDDTLAPGALRAVADRLGEAGDPDVLYFAHERAHWWEGGTTVVRPAGPLTPAWSAAYRRDFLAGRQLLFPIGHHTGLGWSGLVALAAGRTAELRETVCVRHLLRRQGSRLHTPGVHQLELLDQVELVLARATAEQGVPDAMFAQLFATVLRSAAHPERLPVHHRRAFFRRATHLYRYYVPAGFRSPGGSLGVQHRLLASGSYAGFRALCAADRAAAGALAALPRPRAPLNRAVCAVQRRLPPDRNLVVYRAHPGGDIGCDLAAVHAKARELAPRLRSVFLVGPDAVDTVPEGAAYAVLGGPDHRRALARARYVLDGSDLEGACGQAQAGADAVLARPGGVHVRTQRGTPVATTGADRAPYPVASAATGALTGLVAHVDRWDFVLSANRHSTETWERAFPGTYASLEYGSPRNDVYYTATAEDVTRARRVLGVPEDRKALLYAPAHRGTPGDRAAGTGPALDPEAFCEAVGEEYVVLLRTRDGLGGARPRGKGGRIIDVTAHRSVADVCLAADALITDHSSLMFDYAHLDRPIVLHTAGWDVLRETRGVCLDLPAVPPGHMARTERELAYLFRDGSYADLEADALRAVFRERFCQFDDGRAAERVVRRVFLGEEPRALPPLVALAERTPAPAPAAATLVRS
>NC_013929.1|WP_013003162.1|6194605_6196846_-|bifunctional-glycosyltransferase-family-2-protein/CDP-glycerol:glycerophosphate-glycerophosphotransferase
MPRFSVIVPVFEVRGFLRPCLDSVLEQSFRDLEVIAVNDCSPDGSGAILDAYAARDPRVRVLHLPANVGPGRARNAGLPYATGDFVLFLDGDDTLTPGALRALADRLAEAGDPDVLVFDHVRAHAWGELWHAGPAPLLAGAGAGTFTVAEHPRVLDLPTVVWNKAYRREFVETHGFRFPPGHHEDAPWTFPVLFGAGRIATLDRICVAHRQRRPGGLLSTASRGHFDVHGQYERVLGLPDSCPGPPGWRALVRNRMAEHCLSVLAEPDRVPSGDRAEFFRRTAALYRKYRPDGGPPAPGHRVLEGGWAAYRARHRATRVRTALGVRGERWRAAGAELVGRGWSLAHERLPLDPGLALYSAGAHRGVLGDPAAVYQAARDLAPHIRGVWVVRPERVAALPPGVEYVTPDSAAYRRLAARAAYFVADTPWPGALTKRPGSVHVHTHRGTPLTFMGADLLHRPGARLGADVPELLRRADRWDHSLVANRHSELVWSRAYPCRFTSLRTGSPRNDVLVNAGPDGGARIRARLGVPAGHTVVLYAPTVRDHRRGGHVERLDLARFAADLRRGLGEAHTLVVRLHPSLADGPARGFGLAELHRRGVVVDATDEPHAEEVMLAADVLVTDYSALMFDYANLDRPIVVYADDRDAVAASRGVYLDITADPPGHVACSYRELAWLFDSGQWRDGESARLRAGFRERYCEFDDGRAAERVVRTLMLGERTVTVPAPRTAGTAGTTGPVASTGFVLS
>NC_013929.1|WP_013003161.1|6193280_6194609_-|hypothetical-protein
MRARAWVLLLAAGFALLQFASVTGRATPDTKNYVAYALALGGAGPREAAAGAVDHYCGSRAATAGRKQGVDVVRFRAPSAAARVAEECRRKLWRKVDRGLAAGRTDGPIPPFASERFQRIFEVRPGYPVLLAPFVAVFGVVWGVWLASVLIAAAGGVLAFLVLRAVRAPTPVALTGQALFYVLPCGATAMRPMTEGVLLALTLAALWGCALAMEGRVRVGVSLVGGALAALFTVKHSQALFLGVCLVGACAVVAVRRSRGGEHGGARGGEHGEERGGEHSEERAGRGPVEPWVRAVAAVSAGAAVCTPVLAGLLRYPASTESLQDLLTDHYTHPDRARLWPEFLRLESAFWVEWVRRQLIQPLFLAALAAGAWGAARQRPVFGWFVIAGACTGILNQAGHPDITIWGDRLIVVAWLLPVLGLPLLLERVTAPRGSLDVVTAS
>NC_013929.1|WP_005486852.1|6192788_6193202_+|organic-hydroperoxide-resistance-protein
MDALYTAVATATHGRDGRAVSNDGKLDLDLALPVELGGNGQGTNPEQLFAAGYSACFASALGLVGRAAKVDVSDAAVTAEVGIGKQGEGFALKVTLRVELPDSVDEATGRKLVEQAHQVCPYSNATRNNIPVELVVE
>NC_013929.1|WP_013003160.1|6192140_6192659_-|MarR-family-transcriptional-regulator
MTTSAVPTPEGVSPEISGQVPEEEFLRLDRQICFSLHAASRAFNGVYRVILKDLGITYPQYLVMLVLWERGELPVKKLGEHLRLDSGTLSPLLKRLETAGLVRRERSARDERSVVVRPTEEGTALRERALAVPRRIVSATSFDVDEIRDLRDRLDHLTAALDEAALRQQPEN
>NC_013929.1|WP_013003159.1|6190282_6191875_-|glycosyltransferase-family-2-protein
MALRQAQVSIVVIGYDDAAHVADAVRSALAQGPAVREVIAVDDCSADGSGELLERLAETEPRLRTLRRRTNSGGCGTPRNDGLDAAAAPYVMFLDSDDVLPPGAVDALLGAALEHDAPVASGLCVRRELPSGRETPWQPELYARRMLVPHPAQRARLAHDTLCVNKLYRTAFLRDHAIRFPEGRFPYEDFVFGARVLAAAPRIALVPDRVYVWHVRRSATRLSLSLDRSGMANWRARTQADRLSYDILLGAGEKRLARAARTRFLDRSLRMYARELDLRGAEYRREWWAETRAHLASFDEGDFAAAPAPGRVVARVILAAEEPRDLARLKEIAARPARLTPPYARAADGTPVWSAELPQVELDHLLVRPVHLLPAAVDAELRPRARGTTLRLRLHELYGRMTQAGPLSVRAEFTARRDGRVGFTGSAPLAAEADSDSWTAEIPLDLSALGGGTWDLRLRLHFADGTHRDTTAHAVAGAGLLRRSVLPSTRHGVLLAQPYATHAGALALRLAPGWRGATDVVLRRLKRLLH
>NC_013929.1|WP_013003168.1|6205793_6209648_-|FHA-domain-containing-protein
MQIRLTVVDPLGPTSEPRGRATACDVLVTAPAGTALAAVTAGLASAVGEGGAERLERSREAGGGQIVLYAGAERLDAQRCTLGEPPLIDGAVLSLGGPAEAGPEVDEAAAQLHVVAGPDAGGVHLLHGGKIHVGRSADADVPLDDPDVSRLHCAVTLASDGRVSVVDLGSTNGTTLDGVRVGDRPVRLAPGALLRIGESALRLASSSGARGISTAPDGEGHVRVRVGGRDAGSPDGTEAAHGSGRGPAERRTVPGQGGVPGIERTARSAGSAGAGRAASGAGRDHTHEDDGGADTPDRAGAAHGGRGGDHPRDTEDHHRGAVDAHRPADTRAAEVAHGRGAFHDTDGSPGPGEPSAPGDVDGPAGSGTRKGTPLRGTDVPRGVRKRGGFGAWARRLAGGRAQAEAEYDPYEYDTEDDEDELGAMASWLPSGGERLPETWPDPAALLLTALGPGARLWERGPDHPEALTVRLGTADRPAPDGPGLLPAVPVTTGLREVGALGLAGPRPRLMGLARAVVAQLAALHSPDALELVLISADRSRTAGERAADWAWLGWLPHLRPAHGQDCRLLLAYDREQTTARLDELLRRVEDHAADAAGHAPGSTPGADGGRATAAGAPGSADRGTGGDEGGPGRRTVRRPSWAREDGPAGDGFPGPYTVVIVDGDPGGADVREAVVRLAQEGPLAGIHVVCLAETESASPASPVAETYAAACATSPAFRACGAVALLSGDVATALRLLRVASAGYGAGGGSGAPGAGGSGRPVDGAAPGRSREGRSGRDDAAHGSASADPAAGGRTHPHLDLTGSARSGADERTRPGTRDLASLDPGEAPGLLNQGTVATLDAVSSAWAERFARALAPLRTDGSDGTAGDRQTRVSAPLPQSARLLDELGLARATPASLMTRWADAADDTTALGGRAWAVLGAGPRGPVSVDLVAEGPHLLIEGPAGSGRTELLRSVAASLAAAERPDRLGIALVDGRDGATGTGGGGGRTGEGLGVCTDLPHVGTHLTANDPVRMREFAQSLITELKRRYELLDGLGFVEWHTRREVSGRIVPQRSAPSGAGVSGAGASGAGASGAGAADLDSSSSSTLRLRPPASRRNTDPDGRGGATRDAASELPRLVVVVDDLDALLSPALGSTGRPAAGSVVRALEAVAREGERLGVHLVAATGVGGRAGESELGRAAGGRVVLSAPMPGPDEPAPGRGELLGEGGRTTVFQAGRVTGRIPRTATLRPTVVPLDWSRMGDPPARRPVRELGNGPTDLALLASALDRAAREVSAAHVPSLL
>NC_013929.1|WP_013003170.1|6210198_6211944_+|serine/threonine-protein-kinase
MRPVGSKYLLEEPIGRGATGVVWRARQRETAGAEAAVPGHPGETVAIKVLKEELASDADIVMRFLRERSVLLRLTHPNVVRVRDLVVEGDLLALVMDLIEGPDLHRYLRENGPFSPVGAALLTAQIADALAASHADGVVHRDLKPANVLLRQGGGEMHPMLTDFGIARLADSPGLTRTSEFVGTPAYVAPESAEGRPQTSAVDIYGAGILMYELVTGRPPFNGQSALEVLHQHLSAEPRRPSTVPDPLWTVIERCLRKNPDERPSAVNLARALRIVAEGVGVHANSMQIAAADGVGHILAPDPAPAQVPGSAPDPFGSADATQVLPHGAGAYDPNAATSVLPHTSGPAGAGDPTTVLPHTGGADPTSVMPPVPSHDPGGRPPEEPHPWQNQLRAARDRNEQTQIQQYLDPGEDPLRRRPQRQANRQQPQQQPQRPPQQPPRRQQRGAQGGPGGGYGHPQQQQQPYAPPAPQPQRQQPQRYAPAPQPQQPAPRPQREPRPPREPRQRSANPMRIPGLGCLKGCLFMIVLFVVGGWLIWEFTPLQGWIGTGKSWWGQLTDWAGDAGRFVRDLVNSQDSGGSGQ
>NC_013929.1|WP_013003171.1|6212291_6213530_+|serine/threonine-protein-kinase
MGRKIGSRYTANQILGRGSAGTVWLGEGPEGPVAIKLLREDLSSDQELVGRFVQERTALLGLDHPNVVSVRDLVVDGNDLALVMDLVRGTDLRTRLDRERRMAPEAAVAVVADIADGLAAAHAAGVVHRDVKPENVLLDMQGPLGPGGAHPALLTDFGVAKLIDSPRRTRATKIIGTPDYLAPEIVEGLPPRAAVDIYALATVLYELLAGFTPFGGGHPGAVLRRHVTETVVPLPGIPEELWQLLVQCLAKAPASRLRASELATRLREQLPLLAGMPPLDVDEPGTESGDGYEEAPAEAETPRERVRRGAVPLVPGAKPDSNRDTHTSMRVPGPDELAGGARGTARVPRAAGAPRPGSARNRGSTVRRRRITLGAAAVALIAAVGVGAWAATSGDEGGGAPSDTKNSAPGNP
>NC_013929.1|WP_013003172.1|6213771_6214878_+|peptide-chain-release-factor-2
MAVVDVSEELKSLSSTMESIEAVLDLDKLRADIAVLEEQAAVPSLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEEDDPDTRAEAESELASVRKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQKGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLDRRRQEEQARMDALKGDGGNSWGNQMRSYVLHPYQMVKDLRTEYEVGNPEAVFNGEIEGFLEAGIRWRKQQEK
>NC_013929.1|WP_013003173.1|6215186_6216086_+|hypothetical-protein
MTKKTRIRVARIAAGAVIAAGASLTAAGAAAALDLGVGVGVSTDDGGSAEIGVSVQTGKDTEGTSIGASEGSTSEGTTSEGTTSEGTTSEGTTSEGTTSEGTTSEGSTSEGTTSEGTTSEGTTSAGSTSEGTTSEGTTSNGSSSNGSTSNGSSNSGGSSSNGSSNSGGSNSGGSNSGGSSSNGSSNSGGSNSGGSSDGGSNSGGSTDGGSTSGGSSDGGSTSGGTDPDGGNDEAVQQEGSSALTDTGSETQAQGAGSGELAETGATETAFLVIGAATMIAGGIGFRLLPRLMVGRGAAA
>NC_013929.1|WP_005486830.1|6216171_6216363_-|hypothetical-protein
MTYDRLVCANCASPVAEGRCHVCRASRERLQQENPFASLSPMTLIALLAILIAAVALLAHQTA
>NC_013929.1|WP_005486827.1|6216606_6217296_+|cell-division-ATP-binding-protein-FtsE
MIRFDNVSKVYPKQTRPALRDVSLEVEKGEFVFLVGSSGSGKSTFLRLILREERCSQGQVHVLGKDLARLSNWKVPQMRRQLGTVFQDFRLLPNKTVGENVAFAQEVIGKSRGEIRKSVPQVLELVGLGGKEERRPGELSGGEQQRVAIARAFVNRPKLLIADEPTGNLDPQTSVGIMKLLDRINRTGTTVVMATHDQNIVDQMRKRVIELEKGRLVRDQARGVYGYQH
>NC_013929.1|WP_013003174.1|6217332_6218250_+|ABC-transporter-permease
MRAQFVLSEIGVGLRRNLTMTFAVIVSVALSLALFGGSLLMSDQVGQMKGYWYDKVNVSVFLCNKSDAASDPNCAKGAVTTEQKKQIKSDLDKMGVVENVEHESQDEAYKHYKEQFGDSPLASSLTPDQMQESYRIKLKDPEKYQVIASAFNGRDGVQSVQDQKGILDNLFRLLGYLNWAARGVMAVMLIVALLLIVNTVRVSAFSRRRETGIMRLVGASGFYIQAPFIMEAAVAGIIGGTIACAFLILGQYFVIDNGVSLSQNLPLINFVGWDAVLTKLPLILAASFLMPALAAFFALRKYLKV
>NC_013929.1|WP_173403008.1|6218431_6219571_+|PDZ-domain-containing-protein
MVFASVLATGAATGLFDAPPGGTAAVVKPSRSAPAGREQDVAAAAAAAMAEGESPVEAAERAVSRSGDRWGAVYSEGEYEQFEEALDGEYTGVGLWARLRRDGHVEVARVQDGSPAADAGIRAGDRLVGVDGEKVDGRPVTEVVSLLRGDAIDGGTGNTGTPESAAAGTEVSLELRRGARTLHETLRRARLSTEDVTVSRTAGGVGVITVDAFTKGSGDVVRRAVERSAGTTGFVLDLRGNSGGLVSEAVTAASAFLDGGLVATYDVNGEQRALHAEPGGDTARALVVLVDGGTMSAAELLTGALQDRGRAVVVGSRTFGKGSVQMPSRLPDGSVAELTVGHYRTPSGRGVDGRGITPDLEADEDALQRAETVLSGLGQ
>NC_013929.1|WP_173403009.1|6219727_6220186_+|SsrA-binding-protein-SmpB
MVAQNKKARHDYAIIDTYEAGLVLMGTEVKSLREGRTSLADGFVQIDRGEAWLHNAHIPEYHQGSWTNHSARRKRKLLLHREEIDKLESKAQETGHTIVPLALYFKDGRAKAEIALARGKKEYDKRQTLREQQDRRESDRAIAAAKRKQREA

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Crispr_ID: NC_013929_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_10

6547426-6547536

Orphan

Consensus_repeat	Method
AGGGGCGCGGGGAACTGCGCGAGAACCCCCACCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_10

>merge|NC_013929|10|6547426-6547536|CRISPRCasFinder
AGGGGCGCGGGGAACTGCGCGAGAACCCCCACCGGGCCTGCACGTGAAACTCGACGGGCGCGCACCCCCTGCCTTTAGGGGCGCGGGGAACTGCGCGAGAAGCCCCACCGG

>NC_013929|10|10|6547426-6547536|CRISPRCasFinder
AGGGGCGCGGGGAACTGCGCGAGAACCCCCACCGG	GCCTGCACGTGAAACTCGACGGGCGCGCACCCCCTGCCTTT
AGGGGCGCGGGGAACTGCGCGAGAAGCCCCACCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013003474.1\|6550021_6550939_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|275172
NC_013929.1\|WP_013003466.1\|6541589_6543878_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_013929.1\|WP_013003469.1\|6545142_6547395_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NC_013929.1\|WP_013003475.1\|6551063_6552014_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|275175
NC_013929.1\|WP_013003471.1\|6548766_6549378_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_013929.1\|WP_013003464.1\|6536993_6539255_+\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NC_013929.1\|WP_037729589.1\|6549480_6549681_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|181924
NC_013929.1\|WP_041669739.1\|6547688_6548786_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176221
NC_013929.1\|WP_013003460.1\|6535132_6535969_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_013929.1\|WP_013003467.1\|6543921_6544161_-\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NC_013929.1\|WP_013003468.1\|6544277_6544955_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380058
NC_013929.1\|WP_013003480.1\|6557426_6560084_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213235
NC_013929.1\|WP_013003478.1\|6553747_6555646_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NC_013929.1\|WP_013003465.1\|6539513_6540803_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NC_013929.1\|WP_013003479.1\|6555662_6557165_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|130783
NC_013929.1\|WP_013003477.1\|6552902_6553751_+\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|377429
NC_013929.1\|WP_013003462.1\|6536246_6536432_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NC_013929.1\|WP_013003476.1\|6552010_6552895_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224743
NC_013929.1\|WP_013003463.1\|6536581_6536905_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_013929.1\|WP_013003461.1\|6535977_6536160_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013003474.1\|6550021_6550939_-\|TIM-barrel-protein	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	3.88461e-43
NC_013929.1\|WP_013003466.1\|6541589_6543878_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_013929.1\|WP_013003469.1\|6545142_6547395_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.42844e-82
NC_013929.1\|WP_013003475.1\|6551063_6552014_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|275175	TIGR04382, myo-inositol_catabolism_protein, 5-dehydro-2-deoxygluconokinase. All members of the seed alignment for this model are translated from the iolC gene of known or putative inositol catabolism operons. Members with characterized function are 5-dehydro-2-deoxygluconokinase, the enzyme catalyzing the fifth step in degradation from myo-inositol or closely related compounds. Note that many members of this family are fusion proteins with an additional C-terminal domain, of unknown function, described by pfam09863. [Energy metabolism, Sugars].	2.26354e-148
NC_013929.1\|WP_013003471.1\|6548766_6549378_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	5.01879e-34
NC_013929.1\|WP_013003464.1\|6536993_6539255_+\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NC_013929.1\|WP_037729589.1\|6549480_6549681_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|181924	PRK09514, zntR, Zn(2+)-responsive transcriptional regulator.	4.49865e-05
NC_013929.1\|WP_041669739.1\|6547688_6548786_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176221	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NC_013929.1\|WP_013003460.1\|6535132_6535969_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	7.63847e-08
NC_013929.1\|WP_013003467.1\|6543921_6544161_-\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	4.15902e-10
NC_013929.1\|WP_013003468.1\|6544277_6544955_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380058	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present the TetR Transcriptional Repressor present in sco1712 proteins from Streptomyces coelicolo which act as a regulator of antibiotic production.	6.02189e-22
NC_013929.1\|WP_013003480.1\|6557426_6560084_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.03579e-81
NC_013929.1\|WP_013003478.1\|6553747_6555646_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NC_013929.1\|WP_013003465.1\|6539513_6540803_+\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NC_013929.1\|WP_013003479.1\|6555662_6557165_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|130783	TIGR01722, Methylmalonate-semialdehyde_dehydrogenase, methylmalonic acid semialdehyde dehydrogenase. Involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterized in both prokaryotes and eukaryotes, functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in P.aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily (pfam00171), making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus. [Energy metabolism, Amino acids and amines].	0
NC_013929.1\|WP_013003477.1\|6552902_6553751_+\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|377429	pfam04962, KduI, KduI/IolB family. This family includes the 5-keto 4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is involved in pectin degradation. This family aldo includes bacterial Myo-inositol catabolism (IolB) proteins. The Bacillus subtilis inositol operon (iolABCDEFGHIJ) is involved in myo-inositol catabolism. Glucose repression of the iol operon induced by inositol is exerted through catabolite repression mediated by CcpA and the iol induction system mediated by IolR. The exact function of IolB is unknown. Members of this family possess a Cupin like structure.	2.41558e-107
NC_013929.1\|WP_013003462.1\|6536246_6536432_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	4.38551e-19
NC_013929.1\|WP_013003476.1\|6552010_6552895_+\|hypothetical-protein	gnl\|CDD\|224743	COG1830, FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism].	0.00595121
NC_013929.1\|WP_013003463.1\|6536581_6536905_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	2.80809e-09
NC_013929.1\|WP_013003461.1\|6535977_6536160_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	2.5375e-19

>NC_013929.1|WP_013003469.1|6545142_6547395_+|MMPL-family-transporter
MTEVNRPPRAGGWTRFVTARPRLSLLVALVLTALAVVAGSDVADRLGSGGWEDPAAQSTYATKALEREFPDSQPNFLLLVDAGRASVDDPAVAAEGKRLTERLAAEKGVRGVASYWQTGAPTLRAEDGGEALIAARLTGDETAANKTLDRIAPELRGTHGPVEVRIGGILAVRHEMQTTIQEDLLRAELIALPVTLVLLVMVFGSAVAALLPLGVGIVAILGTNAILRGLTEITDVSVFALNLTTAMGLGLAIDYALFIVRRFREELAGGADSPTAIATTLRTAGRTVLFSALTVAVSLAAMMVFPQYFLKSFAYAGIAVVLLAAGAALILLPAALILLGDRVNAFDLRKLFRRRKAADTAADATPAKEEGAAWGRTAALVMRRAPYFAIATTAGLLLLGLPFLGVKFGTADDRQLPSTAESHVVQQHLREGFPGSPGGGLAVLAEGEATKTEYAGYKQRLADLPDVLRVEGPLVHGDWAYFTVQPEGDAVDEGAQRLVDDIRSMDTPFDTSVTGTAAVLVDTKAAIGEGTPWALAFIATVTLILVFLLTGSVLIPLQAVLLNALSLTAMFGALVWVFQDGHLSGLLAFTSPGSIETTLPVLMFCVAFGLSMDYGVFLLSRIKEEYDHSGDHVGSVRYGLQRTGGLITAAAVILAVVMIAIGTSRVTNTKMLGLGIALAVLMDAMVIRSLLVPAVMRLTGRATWWAPAPLKKFHARFGLTETDNQPPTPTPAPEAKPEPKPEPVPTHSNS
>NC_013929.1|WP_013003468.1|6544277_6544955_-|TetR-family-transcriptional-regulator
MPVNQEKEQPRRRQARGERRIAQLLEAAATVFCSTGYAAASTNAIAREAGVSPGTLYQFFPNKEAIAIELSGRLMHEMRETYGEALAPVDPATPLEEAVAAAVDRFIDFNCRHPVVFTLMHGPDVPGRIAEQHDAVHAALLARIETLLTPFLPDASAADISRTAHVCVAMYKAGLELVLTREGEERAAYVQELKNVLFRYLEPLAGGDCTPGSPAGTPAPAAPAP
>NC_013929.1|WP_013003467.1|6543921_6544161_-|heavy-metal-associated-domain-containing-protein
MTAETDTQGSVTAVYQVSGMSCGHCEGAVSGEITQLPGVSSVKAVASTGEVTVVSAAPLDEEAVRAAVDEAGFELVGAV
>NC_013929.1|WP_013003466.1|6541589_6543878_-|copper-translocating-P-type-ATPase
MTSTDTTSTLAAASEGGPLREVELTIGGMTCASCAARVEKKLNRLDGVTASVNYATEKAKVSYPAGVEVAELIATVVKTGYTAQEPPAPAPPATTAPAAATGSGEEGTDPELAALRQRLTVSVLLAVPVVLMSMVPALQFDNWQWLSLTLAAPVVVWGGLPFHRAALTNLRHGAATMDTLVSVGTLAAFGWSLWALFRGHAGMPGMRHGFTFTVTRESASSAIYLEVAAGVVAFILLGRYLEARAKRRAGAAFRALLELGAKDVSVLRQGREVRIPVADLAVGDRFVVRPGEKLATDGTVVEGASAVDASMLTGESAPVDVTVGDPVTGATVNAGGRLVVEATRVGADTQLARMARLVEDAQNGKAQAQRLADRISAVFVPAVVLIAVATFGVWLGATDDTTAAFSAAVAVLIIACPCALGLATPTALMVGTGRGAQLGILIKGPEVLESTRRVDTVVLDKTGTVTTGRMTLGEAHTAEDVTEEDVLRLAGAVEHASEHPVGRAIAAGAEERLGPLPPVEGFENLPGKGVRGRVEGRTVQVGRMTPESPLPEPLRVAKEAAEAEGRTAVVVTRDGVTLGVVTVADAVKETSAEAVRRLRALGLTPVLLTGDNTRVARSVAAAVGIPPEDVIAEVLPQDKVDVVRRLQGEGRTVAMVGDGVNDAAALAAADLGLALGTGTDAAIEAGDLTLVRGDLRAAADAIRLSRRTLSTIKGNLAWAFGYNVAALPLAAAGLLNPMIAGATMAFSSVFVVTNSLRLRTFS
>NC_013929.1|WP_013003465.1|6539513_6540803_+|citrate-synthase
MSDNSVVLRYGDGEYTYPVIGSTVGDTGFDIGKLRAQTGLVTLDSGYGNTAAYKSAITYLDGEQGILRYRGYPIEQLAERSTFLEVAYLLINGELPTVDELSTFQNEITQHTLLHEDVKNFYRGFPRDAHPMAMLSSVVSALSTFYQDSHNPFDERQRNLSTIRLLAKLPTIAAYAYKKSIGHPFVYPRNDLGYVENFLRMTFSVPAQEYDLDPVVVSALDKLLILHADHEQNCSTSTVRLVGSSQANMFASISAGISALWGPLHGGANQSVLEMLEGIQANGGDVDSFIRKVKNKEDGVRLMGFGHRVYKSFDPRAKIIKAAAHDVLSALGKSDELLDIALKLEEHALSDDYFVSRNLYPNVDFYTGLIYRAMGFPTEMFTVLFALGRLPGWIAQWHEMIKEPGSRIGRPRQIYTGVVERDFVPVEGR
>NC_013929.1|WP_013003464.1|6536993_6539255_+|ATP-dependent-RecD-like-DNA-helicase
MSKQAGNNEPTERRLAVLEGVLERITYANEDNGYTVARVDTGRGGGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTRKIADAWEEQKAIKEVMLFLQTVEVSTSIAVRIYKKYGDASIGVVKNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPERVKAGLQYALSQATDQGNCYLPEERLIADAVKLLQVDTGLVIECLAELALPDEDSGEPGVVREKVPGQDGGDPVTAIYLVPFHRAELSLSAQLLRLLRTDEDRMPGFHDVAWDKALAWLRGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGADASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLFVGDVDQLPSVGAGEVLRDLLADGGPIPAVRLTKVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDETEEAGRLTVDVAARRIPAKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYDKGANGVFNGTVGVVTALDPVDQRLTVLTDEDEEVEYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSAGRRCTALDFRLAPRVF
>NC_013929.1|WP_013003463.1|6536581_6536905_+|helix-turn-helix-transcriptional-regulator
MGGHVTWSASAHRERAEELAGGRDAFLEGAHTMLVEARAWRLADMRQERGITQAQVAERMGVTKGRVSQIESRQVSGTDVVARYVEALGGNLVMVAVFGDGELRKVG
>NC_013929.1|WP_013003462.1|6536246_6536432_+|DUF397-domain-containing-protein
MCNWRKSSYSGPDDGNACVEIAPTLTRIAVRDSKAPSRATLTFSTPAFTSFLKALKRPAEG
>NC_013929.1|WP_013003461.1|6535977_6536160_+|DUF397-domain-containing-protein
MEKWRKSSYSGDGDGDECVEIATTPTRIAVRDSKTPSRATLTFSTPAFTSFLEALKRRTE
>NC_013929.1|WP_013003460.1|6535132_6535969_+|helix-turn-helix-transcriptional-regulator
MVKRREPTARQMRLANELRRLREAAGLSSREAASLLGVSPAQITHIESALAGVSELRLRRLASHYACTDEEFIDALVAMATDRTRGWWEEYRGLLPTPFLDLAELEHHARFQRHVAILYVPGLLQTEDYARAVFSSRLPELTEEEVELRIRHRMARQAVALPYEAVIHEAALRIRVSDRAASRAQLAKILDLSEVDNVTVRVIPFDLDGFARAASAMAFVGGPLSKLDTVVRDAPHGSVFIDSEAQLNSYRTRFRRVEDASLEPGASREFIHNLAREL
>NC_013929.1|WP_041669739.1|6547688_6548786_+|zinc-dependent-alcohol-dehydrogenase-family-protein
MRAVVFERFGEPATVQNLATPTPTPHGVVVRVEATGLCRSDWHGWQGHDPDITLPHVPGHELAGIVEATGSAVTAWHPGDRVTVPFVCACGTCPTCAAGDQQVCERQTQPGFTHWGSFAQYVALDHADVNLVALPEELSYATAAALGCRFATAFRAVVAQGRVAPGEWVAVHGCGGVGLSAVMIAAAAGARVVAVDVSPQALDLARTFGATACVNASTATTAPDPATPVPAAPGTTAPDTAAAVRDLTGGGAHLSLDALGSPATCAASVNSLRRRGRHIQVGLLPSPEGTTPVPMARAVALELELLGSHGMAAHAYPRMLELVRAGVLRPDLLVTSTISLDAAPAALAAMGTAPGGGVTVIDPWS
>NC_013929.1|WP_013003471.1|6548766_6549378_-|GNAT-family-N-acetyltransferase
MSFSRKPVLTGERAVLRPFTMDDAPVMARILADPEVVRLTGSPAEEFGADRLRSWYGSRNDHADRLDLAIVDRASGELVGEAVLNEWDEANRSCCFRILIGPGGRGRGLGTEAVRLTVGHAFEEVGLHRVSLYVFTHNPRARRVYEKAGFVAEGVERQTLWQDGTWIDAVRMSVLAPEWADHRGRPGGHGERPDGGRVSSTGR
>NC_013929.1|WP_037729589.1|6549480_6549681_-|MerR-family-transcriptional-regulator
MTDRRLWSYQDIAAHIRVRPDTVRSYRKHGLLPPPDHTENGKPYWYADTVRAWVASRPGNRGRGAD
>NC_013929.1|WP_013003474.1|6550021_6550939_-|TIM-barrel-protein
MTSLSPQSSLSRIRVGSAPDSWGVWFPDDPQQVPWQRFLDEVAASGYEWIELGPYGYLPTDPAVLAEETAERGLKVSAGTVFTGLHHGPDVWEKTWAHVADNAALAQAMGAQHLVVIPSFWRDDKTGQVLEPSELNVEQWRHLTQLTERLGREVREKYGLKIVVHPHADTHIDSEENVVRFLDGTDSSVVSLCLDTGHYAYCGGDSVKLIETYGERIGYLHLKQVDPEILADVRANEVPFGPAVARGVMCEPPKGVPELGPVLAAAAKLDVDLFAIVEQDMYPCEPDAPLPIAQRTRAFLRSCGA
>NC_013929.1|WP_013003475.1|6551063_6552014_+|5-dehydro-2-deoxygluconokinase
MAYDLITMGRIGVDLYPLQTGVPLPQVTSFGKFLGGSATNVAVAASRLGRSTAVITRTGEDPFGEYLHQALREFGVDDRWVTPVPGLATPITFCEVFPPDDFPLYFYRRPKAPDLEIDAHELDLDAVAGTRIFWVTGTGLSEEPSRTATLAALAHRARAGTTVFDLDWRPMFWSDPAEARPFYEEALRHTTVAVGNLDEVEVATGVREPHAAARALLDAGVELAVVKQGPKGVLAVNSKGESAEVPPLPVEVLNGLGAGDAFGGSLCHGLLEGWSLEKIMRHANAAGAIVASRLECSSAMPTADEIEAAVAAGAVL
>NC_013929.1|WP_013003476.1|6552010_6552895_+|hypothetical-protein
MSIDVSALVRTRVHHPEAIAEAAARRVRRPLIGDSGRLMIVAADHPARGALSVGDRRLAMANRADLLERLCLALSRPGVDGVLATADILDDLLLLGALDGKVVMGSMNRGGLAGASFELDDRFTGHRPEDMRRLGFDAGKLLLRVDYDDPGSLTTLESTARAVDAMAERRLPVFVEPFISRRDPATGKVRNDLSAEAVTKSIAIAAGLGGTSAYTWLKVPVTDNPDDMAQVMETSTLPAVLLGGDVGEDQEGAYEKWRGALQLPTVQGLVVGRSLLYPADDDVTAAVDTAVGLL
>NC_013929.1|WP_013003477.1|6552902_6553751_+|5-deoxy-glucuronate-isomerase
MTQKTELYVPKGATANAQYAVDIDPKRAGWTHSSLRVVELEPDGTHTFTTGDSEWIVLSLGGGCTVRVSEEPGNSDGGGVTEFEILGRESVFAGVSDFVYAPRDARVQIASGAGGRFALAGAKCERRLPARYGPAPEVPVEDRGSGTCARQVRNFASADAFACDKLIAVEVVTPGGNWSSYPPHKHDENRPGEETALEEIYYFEIDGPHGFGYQRVSPSREGGSEVLAEVRSGDAVLVPDGWHGPSIAQPGHSMYYLNVMAGPGAERQWRICFHPDHTEGYR
>NC_013929.1|WP_013003478.1|6553747_6555646_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MSTTTPSTTRLTVAQALVRFLSAQYTERDGERRRLIGATWGIFGHGNVAGLGQALVQYADDMPYLQGRNEQAMVHAAVGYARQSNRLSTHAVTTSIGPGATNLVTGAALATINHLPVLLLPGDTFATRPADPVLQQLEVPYAGDISVNDTLRPVSRYFDRVTRPEALIPTALQAMRVLTDPVETGAVTLALPQDVQAEAYDWPEEFFAERTWNVRRPAADVAELAAAITAVREARRPLIVAGGGVHHARAEETLAELAAATGIPVASTQAGKGSLRFDHPQDVGGIGHTGTATANELARTADLVIGVGTRYTDFTTASNTLFAADGVRFLNLNIAPYDGHKLSALPLIADARAGLEALSEALELHGHRVADDYVAEYAQDKQRWEHRVDACYEADEPDTRPTQAQVLGLLDEIADESDILINAAGSLPGDLHKLWRTRSRDQYHLEYGYSCMGYEIPAAIGVRLAAPGRPVWALVGDGTYLMMPTEIVTAVQENVPIKVLLVQNHGYASIGGLSESVGGERFGTAYRHRDPDDGTFTGAPLPVDLAANAASLGMRVLRAKTVRDLRAALAEARAADTPTCVYVETQTADTVSGPPPAQAWWDVPVAETATRASAVKAREEYDRHVSTRRRHL
>NC_013929.1|WP_013003479.1|6555662_6557165_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTKIVNHWIGGKTVEGASGTFGPVTDPATGAVTTQVAFATVDEVDAAVRTAKEAYLTWGQSSLAQRTSILFKFRALLDANRDAIAELITAEHGKVHSDALGEVARGLEIVELACGINVQLKGELSTQVASRVDVSSIRQPLGVVAGITPFNFPAMVPMWMFPMAIATGNTFVLKPSEKDPSASIKIAELLSEAGLPDGVFNVVHGDKVAVDALLEHPDVKAISFVGSTPIARYIHTTASANGKRVQALGGAKNHMLVLPDADLDAAADAAVSAAYGSAGERCMAISAVVAVGAIGDELVEKIRERAEKIKIGPGNDPTSEMGPLITAVHRDKVASYVTGAAAEGCEVVLDGTGFTVDGHEDGHWIGISLLDKVPTSAKAYQDEIFGPVLTVLRVDTYDEGIALINASPFGNGTAIFTRDGGAARRFQLEVEAGMVGVNVPIPVPVGYHSFGGWKDSLFGDHHIYGNDGTHFYTRGKVVTTRWPDPADGPTGVDLGFPRNH
>NC_013929.1|WP_013003480.1|6557426_6560084_+|alpha/beta-fold-hydrolase
MDLRLTGPRLRGALRRRPRRALAAAAAVVVLAGAGTWTATASDEAAPVKRTDRAVDTAEGVRIDTSYFTSGGDGRRPAVLLGHGFGGSKNDVREQAEDLARDGYAVLTWSARGFGRSTGKIGLNDPKGEVADVSKLIDWLATRPEVQLDKKGDPRLGIAGASYGGAIALLTAGYDDRVDAIAPAITYWNLADALFPNGVFKKLWAGLFVNTGGGCEKFETRLCEMYQRVAESGRPDAEAVKLLAARSPEAVGDRIKVPTLLMQGQTDSLFPLGQADAAAEAIKANGAPVDVDWISGGHDGGDMETSRVQARTRAWFDRYLKDDRGADTGSAFRVTRTLGAGSGDGEPRLAGTTDDTYPGLESDLTKIALAGREQSFENPAGANPPAISALPGLGAGGGLAQLSSLGVGISLDFPGQFAAFQSKPVADDLQITGSPTATVHVKSTSEDAVLFAKVYDVGPDGRSQVLPSQLVEPLRVEGAEAGKDVTLTLPAIDHELDDGHRLRLVLASTDLGYASPTTPATYTVSLKGDLEVPTPLGGADRTDVLPAWVWYLPVAGAVIAAVLLVTGRRRTVTPAPDPALAEVPLQITDLSKKYRNGDRYSVRDLSIRVEKGQVLGLLGPNGAGKTTTLRMLMGLIQPDGGQIRVFGHAIVPGAPVLSRVGAFVEGAGFLPHLSGRENLELYWAATGRPVEDAHLDEALEIAGLGDALARAVRTYSQGMRQRLAIAQAMLGLPDLLILDEPTNGLDPPQIREMREVMIRYAAAGRTVIVSSHLLAEVEQTCTHLVVMDHGQLVQAGPVSEIVGSGDTLLVGTSEPVDEPLVEKIAALPGVGSAVRADDGLVVRLDADGSAQRLVAELVRLEVPVESVGPHRRLEDAFLTLIGESA

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Crispr_ID: NC_013929_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_11

6905768-6905947

Orphan

Consensus_repeat	Method
CCTCCTGCACCGGCGGTGCCTCCGCAACAGGCGGCG	PILER-CR

2 spacers

The CRISPR arrays of NC_013929_11

>merge|NC_013929|11|6905768-6905947|PILER-CR
CCTCCTGCACCGGCGGTGCTTGCTCCTCAGGGGGTGCCGTCTCCGCCGGCGGTGCCTCTGCAGCAGGCGGCGCCTCCTGCGGGGGAGGCGCTTCCTCCGCCGGGGGTGCCTCCGGAGCAGGCGGCTCCTCCTGCGCGGGAGGAGCCTCCTTCACCGGCGGTGCCTCCGGAACAGGCGGCG

>NC_013929|11|1|6905768-6905947|PILER-CR
CCTCCTGCACCGGCGGTGCTTGCTCCTCAGGGGGTG	CCGTCTCCGCCGGCGGTGCCTCTGCAG
CAGGCGGCGCCTCCTGCGGGGGAGGCGCTTCCTCCG	CCGGGGGTGCCTCCGGAGCAGGCGGCTCCTCCTGCGCGGGAGGAGCCTCCTTCACCGGCGGTGCCTCCGGAA
CAGGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_013003819.1\|6910119_6910560_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|377602
NC_013929.1\|WP_013003812.1\|6902974_6903634_-\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678
NC_013929.1\|WP_013003805.1\|6893841_6894483_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NC_013929.1\|WP_013003817.1\|6908101_6909202_+\|permease	unknown	unknown	gnl\|CDD\|223773
NC_013929.1\|WP_013003821.1\|6913034_6913562_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_013003808.1\|6897550_6897901_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|379380
NC_013929.1\|WP_013003810.1\|6900501_6901734_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NC_013929.1\|WP_037726453.1\|6902130_6902919_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NC_013929.1\|WP_013003824.1\|6915602_6916928_+\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NC_013929.1\|WP_013003809.1\|6897897_6900501_-\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NC_013929.1\|WP_013003807.1\|6896599_6897532_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NC_013929.1\|WP_037726455.1\|6904605_6905244_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_013929.1\|WP_013003818.1\|6909198_6910068_+\|TIGR03943-family-protein	unknown	unknown	gnl\|CDD\|274870
NC_013929.1\|WP_013003822.1\|6913601_6914267_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|225500
NC_013929.1\|WP_013003813.1\|6903787_6904327_-\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_173403020.1\|6894677_6896309_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NC_013929.1\|WP_041671050.1\|6917024_6918551_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349873
NC_013929.1\|WP_013003823.1\|6914572_6915433_+\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NC_013929.1\|WP_037726491.1\|6907656_6908076_+\|SsgA-family-sporulation/cell-division-regulator	unknown	unknown	gnl\|CDD\|377399
NC_013929.1\|WP_013003820.1\|6910600_6912718_-\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239155

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_013003819.1\|6910119_6910560_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|377602	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like. GGACT, gamma-glutamylamine cyclotransferase, is a ubiquitous enzyme found in bacteria, plants, and metazoans from Dictyostelium through to humans. It converts gamma-glutamylamines to free amines and 5-oxoproline.	4.82224e-25
NC_013929.1\|WP_013003812.1\|6902974_6903634_-\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	1.00609e-53
NC_013929.1\|WP_013003805.1\|6893841_6894483_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	3.85179e-83
NC_013929.1\|WP_173403020.1\|6894677_6896309_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.21866e-81
NC_013929.1\|WP_013003808.1\|6897550_6897901_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|379380	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.	4.654e-45
NC_013929.1\|WP_037726453.1\|6902130_6902919_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.76065e-36
NC_013929.1\|WP_041671050.1\|6917024_6918551_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349873	cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus aminopeptidase and similar proteins. Peptidase family M28; Streptomyces griseus Aminopeptidase (SGAP, Leucine aminopeptidase (LAP), aminopeptidase S, Mername-AA022 peptidase) subfamily. SGAP is a di-zinc exopeptidase with high preference towards large hydrophobic amino-terminal residues, with Leu being the most efficiently cleaved. It can accommodate all except Pro and Glu residues in the P1' position. It is a monomeric (30 kDa), calcium-activated and calcium-stabilized enzyme; its activation by calcium correlates with substrate specificity and it has thermal stability only in the presence of calcium. Although SGAP contains a calcium binding site, it is not conserved in many members of this subfamily. SGAP is present in the extracellular fluid of S. griseus cultures.	3.27235e-112
NC_013929.1\|WP_013003810.1\|6900501_6901734_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	2.43592e-104
NC_013929.1\|WP_013003807.1\|6896599_6897532_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	4.45711e-124
NC_013929.1\|WP_037726455.1\|6904605_6905244_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.08239e-42
NC_013929.1\|WP_013003818.1\|6909198_6910068_+\|TIGR03943-family-protein	gnl\|CDD\|274870	TIGR03943, TIGR03943, TIGR03943 family protein. Members of this occur in gene pairs with members of pfam03773. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region.	5.07085e-51
NC_013929.1\|WP_013003822.1\|6913601_6914267_-\|YdcF-family-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	6.459e-56
NC_013929.1\|WP_013003824.1\|6915602_6916928_+\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NC_013929.1\|WP_013003817.1\|6908101_6909202_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	5.96247e-43
NC_013929.1\|WP_013003823.1\|6914572_6915433_+\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	7.52812e-31
NC_013929.1\|WP_013003809.1\|6897897_6900501_-\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NC_013929.1\|WP_037726491.1\|6907656_6908076_+\|SsgA-family-sporulation/cell-division-regulator	gnl\|CDD\|377399	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA. The precise function of SsgA is unknown. It has been found to be essential for spore formation, and to stimulate cell division.	3.9018e-37
NC_013929.1\|WP_013003820.1\|6910600_6912718_-\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0

>NC_013929.1|WP_037726455.1|6904605_6905244_+|NAD(P)H-dependent-oxidoreductase
MQTTTDTRTRETTDPTPGSSSATPVRVTLLIGSNRTGRFGPVIAEWLLDRVRRHDGFEVEVVDVAEADLLPTTFATTPESTARLAGITPKLAEAEAFIVLTPEYNHSYPAGLKNLIDWHFHEWRAKPVALVSYGGMSGGLRAAEHLRQVFAELHAVTVRDTVSFHQAHAAFDETGHLKDPSAPDAAARVMLDQLAWWAQALREAKERRPYGG
>NC_013929.1|WP_013003813.1|6903787_6904327_-|hypothetical-protein
MRRTARPLTATALAVALAALAAAPAYGGPYDGGGGRLDVSPAGVVPGDEVTVRTTACGPDGTATGDAGAVGAGSFSLASGAGQQRLGGRFEVPPSAQPGTYEIVATCADDGRRVTGDLVVTLTGTRTAPPAYPRGSVKTGVGGALGPDPVQTAAGVAALAVAAAGGTWLLHRRARGDGI
>NC_013929.1|WP_013003812.1|6902974_6903634_-|class-F-sortase
MRRLPDSAIAGVTLVALFCGAWLLHSGTASHAPPQPSAAQAHLRSGTPGVPPEPGGASGTPAALPLPPSPPDRIRIPSLRVDAPLTGLGLTAAGSLDVPPAAKPNLAGWYEAGTSPGERGTSIVAGHVDNADGPAVFFRLGALKRGAVVEVDRRDGGTAVFTVDAVEVYDARDFPDAKVYGAATRPELRVITCGGGYSRATGYRGNVVVFAHLTGSRPS
>NC_013929.1|WP_037726453.1|6902130_6902919_+|TSUP-family-transporter
MPDISLTMVVVLCLAALAAGWIDAVVGGGGLLLLPALLLGLPNGTSAAQYALGTNKAVAIVGTTGAAVTYARRTPVDVRIAVRIGLAALAGSTAGALVAAGLSTEILKPVVMAVLLAVGAFVILRPSFGTTAPATGPVSARRVLAAVGLAGVGIGFYDGLIGPGTGTFLVLALTALLHLDLVTASATAKIVNCCTNAGALAMFAWKGTVYWQLAALMAVFNLVGGTVGARTALKKGSGFVRIVLLTVVFTLVAKMGYEQWVA
>NC_013929.1|WP_013003810.1|6900501_6901734_-|NAD(P)/FAD-dependent-oxidoreductase
MTSNERVVVIGSGLAGVRLARRLGELGMPATLVGEEEHPPYNRVLLAEVLAGRYAPEVIALPAPAEPTRTVNGRVVRIDREVRAVHLADGTEIPYDRLVLATGSNPVLPPLRGLWDPERHEFPDGVHAFRTMDDCLRLSEAVRPGARAVVIGGGLLGVSAARALALRGAQVVLAQQGERLMERQLDPSASKLVRRHLTDLGVEVHTETRVRAVRSVGGAVRSVSMADGYTLDADLVVIACGVHPRVGLAQEAGLAVHKGVIVDEELRSSDPRIHAIGDCAQFEGTVYGLATPALEQADVLAELIAGVASPAARYTGTRALTRLTLAGADFLDLAAFGEPEPLPGDDVIQLADATRGTYRKVVVRDDRLVGGVLVGELGTVGALARAWEGAEPLPADGAPLLHLLTNDGGS
>NC_013929.1|WP_013003809.1|6897897_6900501_-|nitrite-reductase-large-subunit
MSATLGPTPTIVLVGHGMVGQRFLEALAERGLTATHRVVVLCEEPRPAYDRVALTSYFAGRTPEDLSMTDMEFIETHGIELFVGDPAETVDREAKKVTARSGQVFEYDILVLATGSFPFVPPVPNKDATGCFVYRTIEDLLAIEEYAKTAETGAVVGGGLLGLEAAGALKGLGLTSHIVEFAPRLMPVQVDDGGGAALLRTIENMGLSVHTGVGTQEIVVDAQGAVTGMKLSDGSELATDLVVFSAGVRPRDQLARDCGLTVGERGGISVDEQCRTVNDPHVFAIGECALAADGRVYGLVAPGYEQAETAAATIAADEAAFTGADLSTKLKLLGVDVASFGDAHGASADCLDVVYSDSRSGVYKKLVIGRGGELLGGILVGDAEAYGTLKAFTGSVPPVSPESLVLPAGAGEAVQLGPTALPDDAIICSCNNVRKGTIRGAVTEHNCTTVPEVKKCTKAGTTCGSCVKVLGQLVTAELEASGVVVDKGLCGCFSQTREELYEIVLALRINTYQQLLDRYGRDEARGGDGCEVCKPTVGSIIASLAPTIGASGYVLEGEQAALQDSNDHFLANLQKNGSYSVVPRIPGGEITPEGLIVIGEIARDFGLYTKITGGQRIDMFGARVEQLPVIWTRLVDAGFESGHAYGKSLRTVKSCVGQTWCRYGVQDSVRMAIDLELRYRGLRSPHKLKSAVSGCARECAEAQSKDFGIIATSGGWNLYVGGNGGATPRHADLLAQDLDDAQLIRLIDRFLMFYIRTADRLERTSTWLERIPGGLDHVRDVVVEDSLGICEELESLMTDHVSAYADEWASTINDPEKLARFVSFVNAPDTPDPVVGFVPERDQIKPDLPLLSIGLRPADVLEGSAQR
>NC_013929.1|WP_013003808.1|6897550_6897901_-|nitrite-reductase-small-subunit-NirD
MTIAPEKTDVKVQLRLADGWFTVCDLTLLTPGRGVAALLPDGSQAALFLDRAGRLYAIDNRDPFGGAAVLSRGLTGSHQGRPFVASPLLKQRFDLANGQCLDDETVRITAYEVRAA
>NC_013929.1|WP_013003807.1|6896599_6897532_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTSGWNVHDIPDQRGRTAVVTGANSGIGYAAARELARRGAHVVLACRSEQRGAAALERMTAEVPDGSVELIRLDLGDLGSVREFAAAYARAGDRLDLLVNNAGVMAVAEGRTADGFETQFGTNHLGHFALTGLLLPTLLATPGARVVTVSSFMHLRANIDIDDLNTERKYRRWLAYGRSKTANLLFTHELARRLAMNGSEVVAAAAHPGYASTNLQTAGPSAEGRKGVERFMRVGNRFFAQSPEGGALPTLYAATAPAVRPDSFIGPAFGMWGAPRPSPRAPWTLDDRAGERLWTASEHLTGVRCSELKA
>NC_013929.1|WP_173403020.1|6894677_6896309_+|SulP-family-inorganic-anion-transporter
MDLGTEITASLVVFLVALPLCIGVAVASGVPAELGIISGVIGGLVVGAARGSTLQVSGPAAGLAALVAETVMEFGVAMLGVIVLFSGILQIVLGLVKLGRMFQAISLAVVQGMLAGIGLPLIFSQLYPMSDAKAPGTPLENMAGVPGLIAGTVTDPQALLAAGLGIVTIVLSFLWKRVPGPVRKVPAALVAVGIGIAVASLPGVGVKTLQVGDLAASVDVPGPEQLSGLASAGVITAILTFTVIASAESLFTAAAVDRMHSGPRTRYNTELVAQGAGNTIAGLLGALPITAVVARSSANVQAGAKTRLSRTLHGLWLLAFALLLPQVLALIPISVLAGVLVHSGWKLFAPDEFPKMWRQDRGEFAVMTLTTLVITVTALLEGVLFGLAAGVVLAALRMSRTVVRQHIEDDTAKVVMAGNATFLRLPKLIDALEAAAASGKPRIRLDLLGVTHLDHACRSQVEEFVAQQRGAGVRVELLMPDLTGVPAAAERSVDVPEDPAGVWDYATVGSAAVGGTGGRIPPGPGPDAEWFYLDTRPLGPSGS
>NC_013929.1|WP_013003805.1|6893841_6894483_+|carbonic-anhydrase
MKALLDRARSFRRRVDFESDEYRKLAVGQFPEALFITCSDSRVIPALITGARPGEIFELRNAGNIVPPHDGYGAASGEAATIEYALEALGVQDIVVCGHSHCGAMGALTYGADLSGLPSVDAWLDYARPALEPVLGERGADGGRDAVPSSEGPGLREVVQLNIRNQLAVLRDYPGARRQLDAGRLRLHGWYYEIDTGRVHELDAHGDFQVHDS
>NC_013929.1|WP_037726491.1|6907656_6908076_+|SsgA-family-sporulation/cell-division-regulator
MPTPPALEQRARACLITPAYEEVPVRTTLRYTPDDPLAVHIDFPAGVSAGDVSVTWAFARALLAEGLTASAGIGDVHLWPCGPAHTVVELRSPHGMAMIRFDTPTLRRFLRRSYAVVPLGGEGLGPAFDDGLASLLDGV
>NC_013929.1|WP_013003817.1|6908101_6909202_+|permease
MFDPSVRMCGVGMQKTDEPAEEAVTAEPEQPAADKATPDGTADAPADQTWPRHWPLLLLGAAVVPGLALFAAVRWAEDPAVQAWRTVCLSIAVQALPFLLLGTALSGAINAFVPTRVFTRVLPRRPALAVPVAGAAGVILPGCECASVPVAQSLIRRGVDPAAAFAFLLSAPAVNPIVLTATAIAFPGSPAMVLARLLASLVTAAGMGWLWLWLGRAEWLKPVARHTGHRPGQSRWNEFRTGFQHDFLHAGGFLVVGAMAAATFNVLVPRTVLDTFADSPWLSVLFLAALAILLSVCSEADAFVAASLTGFSPTARLTFMVVGPMVDLKLIALQTGTFGRAFAVRFSTATVVVAILCSALIGAVLL
>NC_013929.1|WP_013003818.1|6909198_6910068_+|TIGR03943-family-protein
MKRPLQALLLLLSGLGLLHATLLTDHYLRYVKKGMYPLLVASGALLLVLAAAEAWSLWRRRGTGDREHHDHERTHAQDLGGEDHDLRGENDEQGHDRSHDHGHDNDHGHDHSAPPRVAWLLFLPALSLLLYAPPAIGAYTASREPPKAVTVTGEGDFDPLPKTSPLPMTLTDFTRRVQQDRARAIDGRTVQLTGFVSPDKETAGGKGDGGWYLTRVIFSCCAADAQFVKVRVHDTPAPPADTWVTLTGTWHRAGTLGTGSAAAALDAHGIKKVPRPYNDYTDGLPAPAS
>NC_013929.1|WP_013003819.1|6910119_6910560_+|gamma-glutamylcyclotransferase
MLPFFVYGTLRPGEVNHDLFLRGRTRTERPARMPGLTLYDGPGYPYAVEETGEDHGGGGAVAGDLVTARPEAYAELLRLLDELEEYAPGDPANLYERVERTATLDDGTAVRAWVYVAAPAVAAGLRARGTRIEDGDWLARRLPPSA
>NC_013929.1|WP_013003820.1|6910600_6912718_-|molybdopterin-oxidoreductase-family-protein
MPNSATPTHCPYCALQCGMNLTPGADGTEGVVVVTERADFPVNRGALCGKGRTAPAVLSSRVRLTGPLVRRAGVLEPASWDEALDRIAEELTRTRTEHGPDACGVFGGGGLTNEKAYALGKFARVVLGTSQIDYNGRFCMSSAAAAGMKAFGLDRGLPFPLEDIPKTGCVVLVGSNLAETMPPALRYLTELKENGGTLIVIDPRRTRTAEQADLHLSPRPGTDLALALGLLHLIVAEGRTDEEYIRERTAGWEEARAAAMAHWPEYVERITGVSVPELREAVRLFCEPEHAMVLTARGPEQQSKGTDTVGAWINLTLATGRAGRPLSGYGCLTGQGNGQGGREHGQKADQLPGYRKLADPEARRHVAEVWGVDPDSLPGPGRSAYELLDALGGDIKSLLLMGSNPVVSAPRAAHIEDRIRSLDFLAVCDVVLSETAALADVVLPVTQWAEETGTTTNLEGRVLLRRRAISPPDGVRSDLEVMRELADRLGVEKGFPTDPEEVFEELRRASAGGAADYSGITYRRLAEENGVFWPCPAPTAEAGAASSAEAHPGTPRLFLDRFATEDGRARFVPVSHRAAAEEPDAEYPVLLTTGRVVAQYQSGAQTRRVEELNEAAPGPFVELHPRLAERLGAAEGDPLAVVSRRGRAVAPARITTAIRPDTVFMPFHWPGEGRANTLTNPALDPTSRMPEFKTCAVRVETLGER
>NC_013929.1|WP_013003821.1|6913034_6913562_+|hypothetical-protein
MNRMRTTVAVLGAAGALTAAQLGLAGAASAASTDSRPSVGTQVAASCPIKITYLKKFYVDNNNWVTNGGLRFGLKNSSKKVTFKDVSLKVTNTKSLRFGRATVTTTGAKITQKTNQIVKVAAKTLKPGKSAAFKVSTRMLRTDLYEVKFAVHGKTTDGKKWGCAVDQGTWGTVQH
>NC_013929.1|WP_013003822.1|6913601_6914267_-|YdcF-family-protein
MVRLPRTRTGRRRTVQALMLLCVLALLPSTWMFTAAGDRLRTTADVPRTEVAMVFGAGLWQGEPSPYLARRLDAAAELYRSGRIKVVLVTGDNSRVEYDEPDAMRGYLTEHGVPDDRIVSDYAGFDTWDSCVRARKIFGVDRAVLISQGFHIRRAVALCEEAGVESYGVGVQDRHDATWYYGATRELFAAGKASLDALFEPDPHFLGPEETGVSKALASAG
>NC_013929.1|WP_013003823.1|6914572_6915433_+|sirohydrochlorin-chelatase
MTATTTKSNADLDSTAHIMNLITDQLAAQLSRVSRDGTRRPAPPALVLVAHGSRDPRALATVRTLMDRVREQRPGLSVRLGHIELNEPLLPDTLAALGDREAVLVPLLLSRGYHVKRDIPETAAASGARTRLAAPLGPHPLLVDTLHARLVEAGWPARTSAAARRTGAVVLAAAGSRDPEAAEDTGRTARLLADRLGVPVVPAYASAAAPTVAEAVRALTAAGRTRVAVASYFTAPGRFATECAKAAPWIASAPLGAHPSMATLILHRYDEARTTRTSPLPALATT
>NC_013929.1|WP_013003824.1|6915602_6916928_+|deoxyguanosinetriphosphate-triphosphohydrolase
MEGTTPPGNETPANHDTPAAYDPPSAERYAPEPDKRPGRTAFQRDRARVLHSAALRRLAGKTQVVTPGTRNLAWDASPRTRLTHSLECAQVGRELGAALGCDPDLVEAACLSHDLGHPPFGHNGEQALNEFAEDCGGFEGNAQSLRLLTRIEPKRFVPSDTTGDLVSVGLNLTRAALDAATKYPWPRGAHPTDPASPKFGVYDDDRPVFDWVRKDAPGTSTTFEAQVMDWSDDVAYSVHDVEDGLHAGHIDPNCLHAEPERQAVFEVARGRYVPAGTDPAELAAALDRLLDQEWWPHGYDGTAVAQARLKDATSQLIGRFCLAAEGATRQAYGGGPLTRYAAELVVPHETRLECAVLKAVADRYVMQRAEQERLRADQRIVVAELAEALTARAPEGLEPQFRALFDAAPDDRARKRVIVDQIASLTDASARSLHVRLAGHS
>NC_013929.1|WP_041671050.1|6917024_6918551_-|M20/M25/M40-family-metallo-hydrolase
MAALALAAPLLIVSAGTADADSNDSKPAKDAKKLSRKLVRESSTKDAYKHLKALQAIADANGGNRAAGTPGHDKSAEYVYKVLKKAGYKVSYDTFEFAYIETLAEKASVLSPTPRGLGIAAMTYTKSTPVGGITAPLAAAAVDATSGCEAGDYAAGAFTGKIALIKRGGCTFAQKQLVASEAGAVGAIIYNNTAGALAGTLGDPASAKIPTAGLSQAEGEALAADVAAGVVTVGFEVRQLQENRTSKNVMAETPGGDADSTVMVGAHLDSVTAGPGINDNGSGSAGILEVAEELAENLKPGKQQPNKVKFAFWSAEELGLVGSESYVERLTEQQREQIKLYLNFDMIASPNHAQFVYDGDDSDGVGAGPGPEGSAQLERDINRFLDSKGEPHEGTDFSGRSDYGPFIAVGIPSGGTFTGAEGIKTANQAAVFGGTAGVAYDACYHAACDNLKNISMKAFGINIGVIANAVGTYTHDLSSLAEPVASKPTTGGDTSGGGLHSDHDEVAE

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Crispr_ID: NC_013929_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_12

6976303-6976398

Orphan

Consensus_repeat	Method
CGTCCCGCGTCGGTCCGCCGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_12

>merge|NC_013929|12|6976303-6976398|CRISPRCasFinder
CGTCCCGCGTCGGTCCGCCGGTTGCCGCCGGGCGAGTGTCCGGCGGCCGGCCCGTCGGCTCCTGCCGGCCGGGCGTCCCGCGTCGGTCCGCCGGCT

>NC_013929|12|11|6976303-6976398|CRISPRCasFinder
CGTCCCGCGTCGGTCCGCCGGTT	GCCGCCGGGCGAGTGTCCGGCGGCCGGCCCGTCGGCTCCTGCCGGCCGGG
CGTCCCGCGTCGGTCCGCCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_041671059.1\|6986113_6987145_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|225921
NC_013929.1\|WP_037726487.1\|6976669_6976912_+\|hypothetical-protein	unknown	unknown	unknown
NC_013929.1\|WP_041669817.1\|6983568_6985482_-\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274738
NC_013929.1\|WP_013003878.1\|6980863_6981889_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367638
NC_013929.1\|WP_013003880.1\|6982532_6983579_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NC_013929.1\|WP_013003869.1\|6966466_6968266_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173838
NC_013929.1\|WP_037725095.1\|6990434_6991109_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NC_013929.1\|WP_013003883.1\|6987249_6989643_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NC_013929.1\|WP_013003875.1\|6975062_6976301_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|368943
NC_013929.1\|WP_013003868.1\|6964550_6966473_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173838
NC_013929.1\|WP_013003872.1\|6972824_6973052_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NC_013929.1\|WP_037726486.1\|6973847_6974741_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NC_013929.1\|WP_013003876.1\|6976915_6977944_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|184875
NC_013929.1\|WP_005478986.1\|6968312_6968621_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|214834
NC_013929.1\|WP_013003873.1\|6973048_6973915_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|365941
NC_013929.1\|WP_013003877.1\|6978034_6980794_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|276938
NC_013929.1\|WP_013003879.1\|6982133_6982445_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NC_013929.1\|WP_013003871.1\|6971729_6972788_+\|3-oxoacyl-ACP-synthase-III-family-protein	unknown	unknown	gnl\|CDD\|223409
NC_013929.1\|WP_013003870.1\|6968617_6971668_+\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225858
NC_013929.1\|WP_013003867.1\|6962738_6964547_+\|fatty-acyl-AMP-ligase	unknown	unknown	gnl\|CDD\|341254

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_041671059.1\|6986113_6987145_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|225921	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism].	3.01037e-06
NC_013929.1\|WP_041669817.1\|6983568_6985482_-\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NC_013929.1\|WP_013003878.1\|6980863_6981889_-\|hypothetical-protein	gnl\|CDD\|367638	pfam03756, AfsA, A-factor biosynthesis hotdog domain. The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a HotDog domain.	3.34179e-15
NC_013929.1\|WP_013003880.1\|6982532_6983579_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	1.13819e-171
NC_013929.1\|WP_013003869.1\|6966466_6968266_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	2.28078e-47
NC_013929.1\|WP_037725095.1\|6990434_6991109_+\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.89677e-43
NC_013929.1\|WP_013003883.1\|6987249_6989643_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	9.58097e-78
NC_013929.1\|WP_013003875.1\|6975062_6976301_+\|alpha/beta-hydrolase	gnl\|CDD\|368943	pfam06500, DUF1100, Alpha/beta hydrolase of unknown function (DUF1100). This family consists of several hypothetical bacterial proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.	6.74332e-07
NC_013929.1\|WP_013003868.1\|6964550_6966473_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	2.46805e-47
NC_013929.1\|WP_013003872.1\|6972824_6973052_+\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	0.000237446
NC_013929.1\|WP_037726486.1\|6973847_6974741_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	2.10073e-22
NC_013929.1\|WP_013003873.1\|6973048_6973915_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|365941	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain). These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.	3.40807e-17
NC_013929.1\|WP_005478986.1\|6968312_6968621_+\|acyl-carrier-protein	gnl\|CDD\|214834	smart00823, PKS_PP, Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups.	8.16065e-16
NC_013929.1\|WP_013003876.1\|6976915_6977944_+\|alpha/beta-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	2.60369e-34
NC_013929.1\|WP_013003877.1\|6978034_6980794_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	5.97484e-42
NC_013929.1\|WP_013003879.1\|6982133_6982445_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	2.14413e-11
NC_013929.1\|WP_013003871.1\|6971729_6972788_+\|3-oxoacyl-ACP-synthase-III-family-protein	gnl\|CDD\|223409	COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].	6.46052e-69
NC_013929.1\|WP_013003870.1\|6968617_6971668_+\|acyltransferase-domain-containing-protein	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_013929.1\|WP_013003867.1\|6962738_6964547_+\|fatty-acyl-AMP-ligase	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0

>NC_013929.1|WP_013003875.1|6975062_6976301_+|alpha/beta-hydrolase
MDHLAELKEFARLHARGQGIGDRQVAAVLPRITNDEPGHPASWARVWTGEADRLAFAGRPLDACRHYALARFPYHGDDVRRRAQDNCVRTFDDWRRRRGVERLVLDHPDGTVVCWASGLDARRRRPLLVVMGGIVSVKEQWAPLLPRLARLGYAAVVTEMPGVGENTLRYHADSWRLLPFLMDRLAGRAAVTRTSVLGLSFSGHLALRAAAADPRIRSVHTVGAPVAGFFTDPVWWPRVPGITVATLRRLTGAASDAELRALLADFPLGPDVLGAVGIPVGYVVSARDEIIPPTEHRLLASALPRVRLKEFDDVHGSPAHLGALRKWLITSLLRARVTTRDRRATPDRRPPTRANGTGAGGPAHGSDAPARPGTAAGAPFAASATGTTSPAAPGPSGYADAVPRQPQPTPAE
>NC_013929.1|WP_037726486.1|6973847_6974741_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MTARRTTAPSPSLGEPVRISGRDGAWDQVRADLEEHEVAVLHARLADWRPDRAGGPRLRALLGRDWDRYLEMTHPDVRTRFAASRVLLKFSAAVALRVPPQAVELGYGPTGRPYLRGYDAVDISLSHTDDLLLIGLATKGLIGVDAERADRPLYTRGLHRHVCTPHELTVLERLPAARRGAALVRMWTLKEAYSKAIGQGLRFRFTDFGFSGDGRPARVLAPDGAPGTGVEWQFRTFSVDGGFVVSVAVSDAGFGGTRDTDARTMLDPRVVAAVAEALGDDADGDDPDGGEDAALDW
>NC_013929.1|WP_013003873.1|6973048_6973915_+|2-oxo-acid-dehydrogenase-subunit-E2
MTGSGAGGTPPAPARAHPERRRRHTLYFLEHAARQRPVHLDTDLDMTRIEAHRAAARAAGRRYSVVTYLLHATGRVLHRHPEANAALAPPRLFGLRGPRTLRFPEVTAKLALDRTVDGERTVLSALLPALERADLDEIQRRVDRYRGPGTEQLPEFRGVRMLGRLPVPLGRLAFAAATRDPARRPGVFGTVAVSSLGHRPVDGFHSSGGTAVTLCAGRVVDRPVVRDGRLAIAPVMRLGLTFDHRIIDGGAAADVLGDLKQEMEGFDDGAEDDGTQPIARGAGADLRS
>NC_013929.1|WP_013003872.1|6972824_6973052_+|acyl-carrier-protein
MHTIDDFVRLVRDELGMPLEEYQISADLDQLPEWDSLYLLKLVTALEQAAGRSLPVGRLLEARSLGEIYQLAARP
>NC_013929.1|WP_013003871.1|6971729_6972788_+|3-oxoacyl-ACP-synthase-III-family-protein
MQSEHPPQHGSAPSGPVSYLASVGTALPGDPVDNAALARTLGVNEEWIDVFIGTRTRHFARDLETGEVRWSLADLCARAAEQALAASGLAPHEIDFVVMGTATPDHLMPATVNHVADQLGLDQLPTYQLQSGCAGAVQALQLGHTLVTGGGHSAGLVIGGDVCSKHLDLNRDLSAAAPSDLVNYVLFGDGAGAAVITSEPRGQRLALSGVLNRFTGLGREPGQVIDWFGLADRHEDRQAVREDYKAIEESVPVMAVEILWELLEDRDWTPEQVDFLLPPQLSGRMTRRIAEELGLPGAVEVSCVADTGNNGNALPFLQLEALLGKIGVGQRALAVAVESSKWIKSGFALEKI
>NC_013929.1|WP_013003870.1|6968617_6971668_+|acyltransferase-domain-containing-protein
MRPVAIVGIDCRFPGAPDTAAYWDMLMRSGDGVEKVPRQRWDARAFHSRAGAEGHSNTTEGGFISDPDAFDNEFFTVSPREAAAMDPQQRLLLQCAWRAVEDAGVAPQRLAGTNTGVFVGIMGNEWAHLHMTDYAQVTAQLGSGNGYCMTANRVSYHLDLKGPSLAVDTACSSSLVAVHLACNALLAGECDTAIAAGVNVALTPALGIFYTQAGLSAPDGRCKPFSADADGIGRGEGVGAVVLRRLEDAIADGQPVYAVIRGTAVNQDGRSNGITAPNRWSQQEVLAAAYRRAGVEPSDVVFTEAHGTGTVLGDMIETKALGQLHAGRSGRPLALGSVKGNIGHTEGAAGIAGLIKVALSLHHKTVPASRFAARENPALKLAKLGIRLLKAPLRLRSGPAIGGLSSFGMGGTNAHAVLESAPPYAARPEGGDPESGSTGRSTGATGLGAGVFTLTAPSTAALRRNLLVQAEALEKRRVPAGPLSWSSNRTKTGHRYRFAVPARDTGELAATLREAAGDEDLLARLVGNAAGKPQVALLFTGQGSQYPAMTARLYLQSPLYRRFLNEADEALAPHVGGSVRDLLLSGDEAVHRTGWAQPALFAVEYAVAASLGELGVPQALLLGHSVGEYAAAVLAEVFPLEQAARLIAARGALMEQLPEGGGMLAVRAPLAELTELVDSEPLVGVGAVNGPRATVLSGDLAALGRIDDELTRRGVRTRRLEVSHAFHSPLMDPMLDRFAALADETGGGVPKLPVYSTVRGRLLEAEPMDAKYWTEHISAPVLFGDAMSRLLEAGPTHLVETGPRPVLSRMARSLRSAAGAGVHSVAPVSGEEADGRTFAEALAELFRSGLDPRWDAVYPQEERQPQRLAPYAFSDAHRFWARTPVRAAPAADLSVVPDRADTAPHQREQESAPGHGAVLTAVLPAAPEDVSTAPVARAVIEAVAEVGGYATDEVSRQSLLYEDLGFDSVMIMELKDRLQERLDGLETISVQDLLPRLSSVGDLVDYLQDRAGSAVA
>NC_013929.1|WP_005478986.1|6968312_6968621_+|acyl-carrier-protein
MTVPATDRTANNEHTAHTVESLSSWLADRIALYLRRTPSEISPTVPLAEYGLDSVAALSLCGDIEEDFDLVLEPTVAWDYPTVAALAEHLVEELRAMEGENR
>NC_013929.1|WP_013003869.1|6966466_6968266_+|acyl-CoA-dehydrogenase-family-protein
MLSDPAVQGLHGKAAPTGTAPATDPATHQARESAVRARIADLENRFGDPQDPANPLGAAGLLAADEAGELPAAGERLLDDVVLNAEFVPTGLGGRLDRLDTLVRVMRQVFRRDVALGLGYGITSFMAAVNVWTAGNEEQRRRTAELLLGGSKISVAYHELPHGNDFVRNEFRADPVPGAFRLNGRKEVINNADRAAAYALFSRTDDSPGSRSHSVLLAERDQLDAERFKVLPRYHAVGVRGCRLSGLDFSDCPVPDSTLLGARGQGVELALRSFQITRSAIPSMAVGALDTSLRTVVRFALGRQLYRRSVMEIPHASSTLTGAFLDLLICDSMATVGTRAVHLLPDETSVYAAAVKYLVPKMLTDTMYDLSIVLGARFYVREGEFGLFQKHVRDLPVLSLGHAGSAACQATIIPQLSRLARRAWFSGDEAPQSLFRPREGLPGIPFESLALASGRDSLSASLVAAADGLPSGSPEELAVQALVMRMLDQLRQLQEDSLNLSPQDRTALASPASFALADRYAVFLAAASVLGVWRGAQGGDDPFLADPAWVAAALHRLARRLGQRPADLPPGCEGRVHEEVLRRFHERRSYDLYDTPLAG
>NC_013929.1|WP_013003868.1|6964550_6966473_+|acyl-CoA-dehydrogenase-family-protein
MEHPPYRVAQELESLLGDPEDPATPFSHARSLELDENEEFPADLCRLLEGWGLQEFYIPAEHGGRLTDYETVMQVMRVVARRDLTVAVGHGKTYLGGVCVWISGTPEQARGLAADIRAGVPVSLALTERAHGSDLLAGDVRGESDGAGGWRISGEKWLINNATRGSLLSVLTRTCEDGGPRGFTVLLVDKRRLAEGDDYRCVDKIRTHGIRGADISGIAFDGAPVPADAAVGGEGGGVETVLKALQLTRTMCASLSLGAADHALGIALDFAERRELFGRRLIDLPQARHVLASAAADVLTGEALATVAARSVHTVPDELSVAAAATKYLVPTGTEGVIVELTRLLGARAFLKDVHARGMFQKVDRDHRIVGLFDGNTLVNLNSLVNQFRSLSRGWLRGGGDTEGAVRAFDLSTPLPPLDPARLSLVARRGSGVMATLPASVAALRAEAGRRPELKGALGAAERLLAVTGRVHEEMDAYRAVVSDVPPAAFDVARHYSLCLAGAACLGLWTHNQRTARAGRTGELWRDGVWLWPVLDRLLVKLGEPDAGDPDAYPQLLERLRAAREAGELFSLIPFSLGGSAGRPTGASDAAARPAHASGGAGPLARTSGGDGGPPAAVPQGQTDTRAAVGGTRTPEGTSC
>NC_013929.1|WP_013003867.1|6962738_6964547_+|fatty-acyl-AMP-ligase
MAEFGSFAEVVLTRSDERGDTDAFVFLADGVRGKVPERLPYRNLDRAAKDIASWLQERGLAGRQVLLLYPSGLDFVKAFTGCLYAGAVAVPAPLPSEQGQHFRRVSGIVRDARVGAVLTLAEHAPEVEAWLAAEGFSDVVCLPTDQGPVGDAAAWRDPALTPDHLAFLQYTSGSTSAPKGVMVSHGNLLANEAAIARSTGNTPDTMIGGWLPFYHDMGLIGHILQPLWLGTTSVLIPPVSFLRKPARWLELVSEYGVNASGGPNFAYDLCVRRVTDAQLEGLDLSTWRTACNGAEPVRAETLQAFTERFGPYGFRPETMFPCYGMAETTLLVTGTPKTRGALLREVDAAGLEQGTLTGPYLGAATRTLVSSGVALAEDFEVRIVDPETLAERPEGQVGEIWVRGASVASGYWERPEVNAEIFGARIAGQEELGAWLRTGDMGVMGSGGELFVTGRLKEMVLINGRNIYPYDVESAVRGLDPAIGAGAVFAVDSGGQEHLVVIHEIRAAAAGADLKDVATQIQRHIGMEFAVPAGNVLLVRPGTVRRTTSGKIQRTLMRKLFLQGAVTALHSVLDPSVRTLVEGDASGAHGAPAADPAMAPVG
>NC_013929.1|WP_037726487.1|6976669_6976912_+|hypothetical-protein
MSSVHTLRAPSPQAQVFAPWRTRTPGQAQPWRSLMSLGLDPDPDPESVPGAQGPGAPDVVESAPVPRRPVRDRHPIPQEA
>NC_013929.1|WP_013003876.1|6976915_6977944_+|alpha/beta-hydrolase
MADDPFTARSPFRPSHQPGRPKPRAVGRNEVRVRTRHLHGYRFAYRMAGKGESAVVLIHGIGDSSATWADVIPGLAARHRVVAPDLLGHGASAKPRGDYSPGAYANGLRDLLSALGIERATLVGHSLGGAVAAQFAYQFPERTERLVLVGSGGIGRQVSPLLRAATLPGAELLLSALQLPTVRWQLQMIVKIMKTLDTGLGVDAPDLLRVVDALPDASSRSAFVRTLRAVVDWRGQVGTLLDRCYLTQGMPTMLLWGGRDMVVPALHAGLGHVSMPGSRLEIFEEAGHFPFHSDPERFLGVLHDFIARTEPARFSAEEWRQLLRTRRARHRGAHPLQGRATG
>NC_013929.1|WP_013003877.1|6978034_6980794_-|winged-helix-turn-helix-domain-containing-protein
MRFRVLGPVSLSPRTPSAAKPRALLATLLVQAGEVVPVHSLIDELWGTEPPRTATTTLQVYVSQLRKVLADSGGPAPAGDLLTRAPGYLLAVPEGEFDLPCFERLRAEGRAAYQEGDFAGASRLLHEALALWTGPALSGIPHGVRLESAAIRLDELRMEVLEQRIVADLRLGRHQELAGELLALANEYPLRESLHGHLMVALYRTGRGSDALRVYGRLRHSLVEELGVEPGPGLSRLHERVLRRDPSLDWQPPRAARGDGRDGAGRAAPGRETGASAHPGVPRRAAGPADGPLPLPGPPPALPSAPPGFVGRHEELAYGEKALRGSAGGDPVRVLALSGPAGVGKTALALRLAHRTADLFPDGGLLIGLRGPQGRPLSSAQAGAALLRRLTDDVPGAPPTDPEELTDRLRRALRGRRMLLILDDAASEQQIRPLLRAFAEGTVIVTGRRRAAALDGAEHLGLDAVRPQEAVELLLAAGGERMAQDPAAAAEIARLCEYFPLALRVAAAALTARPHTTPAALAGRLRDERTRLGVLREGDLDLRSSLLTGYQEAGPALRRAFRLLSLAPAPDFTGWTVAALLGTGRAEAEETAEELVRAQLLEARGDGQSVRYGFHSLLRVLATELREAEPDAARTRRDAVERLGRAYVALARHADARLTPGRDWRARPAATAGESDAGAVVGASPLGWFREEATGLVETVRQAHAAGLWPLVWRLAWSAAGYFHARAAWEEWEETHRLALDAARRSRSTEAEAVIQYSLGDLAWQRRQADRALRHHTAAQHAFELVRDRTGVARCRIGAADVLLGQGLAEPAARRYGRALAVCSAEGDARGEVAALNGLALVNLRRGRPEVAGRHLEQCRRTAERLGDRRWTEYVRRTAARLAPDPARRLSPVAHAVEVRPGMWLIGTAVPALTPAGAA
>NC_013929.1|WP_013003878.1|6980863_6981889_-|hypothetical-protein
MDITFTSQPAASTPDSRGRTAPLHLLHRPVTPEGFLLDATAAEEQHFALSAELPGDHGTFNDGPGTFHDLLFVAETLRQATHFVAHQYFRVPAERPAVFVSSGLDVLDLAPWRPTGRPAHLTLDITLVPVDVVNGVPRGLDCRGDVAIDGVGCGSASARIQFLMPGVYRSHREVGRRESLRSTAPVVRPLASMTAASQEEPPAVTPESVGRRDPRNVIVGTPLRAPYGEFVLPVAGDPGHEVFSAVPGDHVPGPVFLEASRQASLLAAAELHGLRPAHAMLTRWRASFRGFGDADLPLTCTVVADEPVRDEADRPTVRTRLAFSQGSRVLCTASAVLLQDC
>NC_013929.1|WP_013003879.1|6982133_6982445_-|ferredoxin-family-protein
MTYVIAQPCVDVKDRACIDECPVDCIYEGPRKLYIQPDECVDCGACEPVCPVEAIFFEDDVPAEWSGYRSADAEVFAGLGSPGGASAAGPLAEDHPLVAARAA
>NC_013929.1|WP_013003880.1|6982532_6983579_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MGTELRLQPKDFKSDQEVRWCPGCGDYAILAAVQGFMPELGLARENITFVSGIGCSSRFPYYMNTYGMHSIHGRAPAIATGLATSRRDLSVWVVTGDGDALSIGGNHLIHALRRNVNLKILLFNNRIYGLTKGQYSPTSEVGKITKSTPMGSLDAPFNPVSLALGAEASFVARTVDSDRAHLTGVLRQAAAHPGTALVEIYQNCNIFNDGAFDALKDRQRAQEAVVRLEHGRPVRFGADGSRGVVRNETTGDLDIVTVTPDNASRVLVHDAHAASPTTAFALSRLADPDTLHHTPIGVFRSVERPVYDTQMAGQLDTAVERSGKGDLSALLAGKDTWSVGRSATAGRP
>NC_013929.1|WP_041669817.1|6983568_6985482_-|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MTVDTVDIEEAVPTPAGIRTKDVRRLDRVVIRFAGDSGDGMQLTGDRFTSETASFGNDLSTLPNFPAEIRAPAGTLPGVSSFQLHFADHDILTPGDAPDVLVAMNPAALKANIADMARGTEIIVNTDEFTKRAMQKVGYATSPLDDGSLDAHRVHPVPLTTLTVEALKSFDLSRKEAERSKNMFALGLLSWMYHRPTEGTEKFLAAKFAKKPEIAAANLAAFRAGWNFGETTEDFAVSYEVAPATSAFPPGLYRNISGNLALSYGLVAASHRAELPLYLGSYPITPASDILHELSRHKNFGVRTFQAEDEIAAVGAALGAAFGGSLAVTTTSGPGVALKSETIGLAVSLELPLLVVAIQRGGPSTGLPTKTEQADLLQAMYGRNGEAPVPVVAARTPADCFDAAIEAARIAVTYRTPVFLLSDGYLANGSEPWRIPGADELPDLRVRFAQGPNHTLDDGTEVFWPYKRDPETLARPWAVPGTPGLEHRIGGIEKQDGTGNISYDPANHDFMVRTRQAKIDGIDVPDIEVDDPHGADTLVLGWGSTYGPISAAVRQLRTAGEPIAQAHLRHLNPFPGNLGEVLSRYRRVVVPEMNLGQLATLIRAKYLVDVRACTQVTGTPFKAGQLAHTLRETIRGN
>NC_013929.1|WP_041671059.1|6986113_6987145_+|SMP-30/gluconolactonase/LRE-family-protein
MDASASASRRTLLRLATAAGLGGALAATPLPAFAQSARCPLPRTLSVTAPGLYPEGVAWDPTRKAFLVGSSAQGTISVVRADGSVTPLVAPFAQVSVLGVTVDAPRRRVLAAYTDYFFRMMGIIDPSLPPVSGVGVFDLVTGAVRHLVDVSDGQPLPRANDLTVDRNGTIHVTDTGVDTVTTVSRDGEVLNVLRDDRFATADTGPNGIVHHPAGFLLMGKYEGGRLFRIDRPCSARPKVSEVRLEGAPASLDGIALRPDGTLVAVSNDLSLSGGRQSPDEVVVLRSTDGWRTARTVQRRTWPHEDPTTVAVTPYGDYVVSGGLREILTGVPSTTPGTFQLRRR
>NC_013929.1|WP_013003883.1|6987249_6989643_+|MMPL-family-transporter
MTAVTKDNPPPETAPPPGAFTALARLTGSRARLLLVLTVILLAGAVVLGSGVADRLRSGGSGGVVDPSSESSYAAGVLEREFPGARPNLVLLARAGTGVDDADVARQGRELAARLADEPGVTGVTSYWDTGSGALRSKDGREALVVARLTGDELEADRTLENRIVGHFDGRRGDLTVRIGGSVAVQNEQQTFIREDLVRAEVIALPITLLILMVVFGSAVAALLPIGIGVIAILGTNAVLRVLTSFTDVSVFATNLTTALGLGLAIDYALLIVRRYREELAAGRDTSGALAVTLNTAGRTVLFSAATVAVSLAAMLVFPLYFLRSLAYAGISVVVLAAVAALVVLPALLAVLGRRIDSLDVRKLVRRRSRAGAAPAAAGAAWARLARGVMRRAPLVATGTLAVLLLLGAPFLNVDFGTADYRQLPSSADSRVVQEHIRDRFQGSPTGAVEVVTRQAPAAGLGAYAERLSRIDGVLRVDAPTGTYTDGRATGPAQPGRTSGEIAYLTVVPGVEAVSDEGKDLVRDVRAVDTDFPASASGTTAALIDSQAAIGRGLPWAVGIIVLATLVLVFLLTGSVLVPLQAVLLNALSLTAMLGAVVWVFQDGHLSGLLGFTPTGSIETALPVLMFCLAFGLSMDYGVFLLSRIKEEHERTHDHRAAVVEGIRSTGGVITAAALVLSVVMVAIGTSRITNTKMLGLGVALAILMDAMVIRTLLVPAVLSLTGRATWWAPGPLRRLHARFGISEGGPAPTAAAPAAAAALAPDGSADRDASASAPPSAPTEKERAGTVGAAAGKPSG
>NC_013929.1|WP_037725095.1|6990434_6991109_+|HAD-family-phosphatase
MAVDTIVVDYGGVLTNPLVETFAAFAELAGIEPADLAQAFLAATELHGETPMAALETGAITERQMVDRILAHLPEGAGRILTDGRGFGELWFRGRRPNEPFLSFLRALRRDGYRLALLTNNVREWEPLWRAQVPVDELFDVVVDSHREGVRKPDPEIYRILLDRLGTPARRCLFVDDTDENCRAAAELGMRAVLFADTDSAVREISGLLHRPVAVAAGVAGGVR

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Crispr_ID: NC_013929_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013929_13

7678711-7678779

Orphan

Consensus_repeat	Method
ACCGTCCGAACCCACCGAGGTTCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013929_13

>merge|NC_013929|13|7678711-7678779|CRISPRCasFinder
ACCGTCCGAACCCACCGAGGTTCCGAACCCACCGTCCGAACCCACCGTCCGAACCCACCGAGGTTCCGA

>NC_013929|13|12|7678711-7678779|CRISPRCasFinder
ACCGTCCGAACCCACCGAGGTTCCGA	ACCCACCGTCCGAACCC
ACCGTCCGAACCCACCGAGGTTCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013929.1\|WP_041669949.1\|7674355_7675843_-\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NC_013929.1\|WP_037728092.1\|7684444_7685317_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NC_013929.1\|WP_013004475.1\|7673780_7674260_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NC_013929.1\|WP_173402926.1\|7682226_7683165_-\|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
NC_013929.1\|WP_013004478.1\|7676695_7677379_-\|DUF2293-domain-containing-protein	unknown	unknown	gnl\|CDD\|370799
NC_013929.1\|WP_037728077.1\|7671248_7672052_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|252734
NC_013929.1\|WP_013004483.1\|7681319_7682225_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NC_013929.1\|WP_013004482.1\|7680300_7681098_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NC_013929.1\|WP_037728085.1\|7678863_7679991_-\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
NC_013929.1\|WP_013004488.1\|7686503_7688633_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_013929.1\|WP_037728075.1\|7669996_7670857_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NC_013929.1\|WP_078580228.1\|7677495_7678137_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|180660
NC_013929.1\|WP_037728084.1\|7678268_7678697_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341390
NC_013929.1\|WP_013004485.1\|7683806_7684361_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_013929.1\|WP_013004472.1\|7670866_7671157_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NC_013929.1\|WP_037728091.1\|7683231_7683660_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319916
NC_013929.1\|WP_013004474.1\|7672320_7673733_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_013929.1\|WP_013004489.1\|7688805_7689384_+\|tellurium-resistance-TerZ-family-protein	unknown	unknown	gnl\|CDD\|376767
NC_013929.1\|WP_013004487.1\|7685597_7686464_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225837
NC_013929.1\|WP_013004477.1\|7676008_7676488_-\|DUF1772-domain-containing-protein	unknown	unknown	gnl\|CDD\|227787

Protein	Function_ID	Function_description	E-value
NC_013929.1\|WP_041669949.1\|7674355_7675843_-\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NC_013929.1\|WP_037728092.1\|7684444_7685317_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	8.4447e-67
NC_013929.1\|WP_013004475.1\|7673780_7674260_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	5.7783e-24
NC_013929.1\|WP_173402926.1\|7682226_7683165_-\|pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	2.98848e-157
NC_013929.1\|WP_013004478.1\|7676695_7677379_-\|DUF2293-domain-containing-protein	gnl\|CDD\|370799	pfam10056, DUF2293, Uncharacterized conserved protein (DUF2293). This domain, found in various hypothetical bacterial proteins, has no known function.	8.82852e-25
NC_013929.1\|WP_037728077.1\|7671248_7672052_+\|SAM-dependent-methyltransferase	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	5.54478e-129
NC_013929.1\|WP_013004483.1\|7681319_7682225_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	5.21508e-59
NC_013929.1\|WP_013004482.1\|7680300_7681098_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	1.55684e-08
NC_013929.1\|WP_037728085.1\|7678863_7679991_-\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.86021e-166
NC_013929.1\|WP_013004488.1\|7686503_7688633_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_013929.1\|WP_037728075.1\|7669996_7670857_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	7.61462e-08
NC_013929.1\|WP_078580228.1\|7677495_7678137_+\|uridine-kinase	gnl\|CDD\|180660	PRK06696, PRK06696, uridine kinase; Validated.	2.3453e-23
NC_013929.1\|WP_037728084.1\|7678268_7678697_+\|CBS-domain-containing-protein	gnl\|CDD\|341390	cd04622, CBS_pair_HRP1_like, CBS pair domain found in Hypoxic Response Protein 1 (HRP1) -like proteinds. Mycobacterium tuberculosis adapts to cellular stresses by upregulation of the dormancy survival regulon. Hypoxic response protein 1 (HRP1) is encoded by one of the most strongly upregulated genes in the dormancy survival regulon. HRP1 is a 'CBS-domain-only protein; however unlike other CBS containing proteins it does not appear to bind AMP. The biological function of the protein remains unclear, but is thought to contribute to the modulation of the host immune response. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.51815e-47
NC_013929.1\|WP_013004485.1\|7683806_7684361_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	4.39784e-49
NC_013929.1\|WP_013004472.1\|7670866_7671157_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	6.07517e-20
NC_013929.1\|WP_037728091.1\|7683231_7683660_+\|VOC-family-protein	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.23162e-17
NC_013929.1\|WP_013004474.1\|7672320_7673733_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.52985e-106
NC_013929.1\|WP_013004489.1\|7688805_7689384_+\|tellurium-resistance-TerZ-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	1.13506e-53
NC_013929.1\|WP_013004487.1\|7685597_7686464_+\|membrane-protein	gnl\|CDD\|225837	COG3300, COG3300, MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms].	2.89459e-40
NC_013929.1\|WP_013004477.1\|7676008_7676488_-\|DUF1772-domain-containing-protein	gnl\|CDD\|227787	COG5500, COG5500, Predicted integral membrane protein [Function unknown].	3.30076e-39

>NC_013929.1|WP_037728084.1|7678268_7678697_+|CBS-domain-containing-protein
MTTAGDIMHRGAQWIPAHETLDRAAQLMRQLNVGALPISDQNERLCGILTDRDIVVGCVALGHDPSTITAGEMAKGTPRWIAADADVAEVLEEMKGHQIRRLPVIENKRLVGMISEADLARHLSDDQIAAWVESVYAKTTAP
>NC_013929.1|WP_078580228.1|7677495_7678137_+|uridine-kinase
MGRVRFEAITWERLGDLLADRIVDLEPDDGSPWPRIAFDGAPASRPEDLADRVSQALRIRGRSSLVVGTEGFLRPASLRFEYGHEDVEAYYDGWFDTAALWREVFGPLDPGGTGRVLPDLWDPTTDRATRSPYVQLPPGAILLTHGPLLLKHWFPFDLTVHVLLSSGALRRRTPEHEHWTLPAFERYEAKTDPAATADVLVRADDPRHPAWKG
>NC_013929.1|WP_013004478.1|7676695_7677379_-|DUF2293-domain-containing-protein
MAALATPPHRTGIVVVQALRRKHCAECRSGPVALLVLEEGAPRCLDCADLGHLVFVPRGDTALTRRAREESALSAVVVRFNRRRSRYERQGVLVEDAALARAEERCLADAEVRRRRRLRDARRRAVEDVRFTDAFAAEIRRLFPACPAGRAEEIAAHASLRGSGRVGRSAAGRALTQVAVTSAVIASVRHVDTPYDRLLMTGVPRHEARRRIAGAVEARLREWRGVG
>NC_013929.1|WP_013004477.1|7676008_7676488_-|DUF1772-domain-containing-protein
MIDGPYFVLTVLGLLGTAIVAGVFCGFSTFVMKGLASLPPAQGVAAMQAINVSALTPAFMLVFVGTAVLCAVLAVVTFVLWPDEGRVELLLGSALYLFGCFGVTMVANVPRNETLAGLDADTAEAASYWREYVSRWTTWNTVRAVASAGSALAYLLALA
>NC_013929.1|WP_041669949.1|7674355_7675843_-|glutamate-synthase-subunit-beta
MADPKGFLTTSREEWPRRPVEERVRDWDEVYVPGALLPIVSRQADRCMDCGIPFCHDACPLGNLIPEWNDLVSREDWRAASDRLHATNNFPEFTGRLCPAPCEAGCVLAINQPAVTIKNVEVAIADRAWADGFTTPRPPDRLSGRTVAVVGSGPTGLAAAQQLTRAGHTVAVYERADRIGGLLRYGIPAFKMEKRHLDRRLEQMRAEGTKFRTSTAVGRDVGAAELRARYDAVVIATGATAWRELPVPGRELGGVHQAMEYLPLADRVCEGDLEVSPLSAAGKHVVIVGGGDTGADCLGTAVREGAASVTQLDIYPLPEAERDEDVEPWPTYPKVYRLSAAHEEARDLRSAPAADADARLFAASTLRFTGDASGRVSALHLVEVDGGRRARPGTERTLPADLVLLALGFSGPDRDDGLVEQLGLTLDPRGTITRGPDFATTVPGVYVAGDAARGQSLVVWAIAEGRAVAAAVDRRLTGTARLPAPIGPYDRPMTA
>NC_013929.1|WP_013004475.1|7673780_7674260_+|carboxymuconolactone-decarboxylase-family-protein
MTTNTTGPATALPRLDFAKSARTAFRALVGFDAAAREGLDPALVELIQIRASHLNHCAYCLHMHTTDARKAGESEDRLHMIPVWKEARHFFTAREQAALALTEAVTLVADTGVPDDVYAEAAAHFDDTELAHVIALILTINTWNRIALATAKRAGTDTR
>NC_013929.1|WP_013004474.1|7672320_7673733_-|PLP-dependent-aminotransferase-family-protein
MVDSWVNSAERIGADLHLELSRGGGRRAALIRALRDAVRGGRLAPGTRLPPYRSLAADLGVARNTVADAYAELVAEGWLTARQGSGTRVAERAEPSGVGARPPREVLARSRGPRHDLRQGAPDASAFPRAAWAASYRRALTRAPNEVFGPGDPAGRVELREALTEYLARARGVRTGPSRIVVCSGFAHALRLLFHGRVLRGPLAVESYGLGFHRELLSAASVRTIPLPLDEDGAGVDGLGRERAVLLTPAHQFPTGGPLHPVRRAAVVDWARARGGLVLEDDYDGEFRYDRKPVGALQGLDPERVVYIGSVSKSLSPALRLGWMVLPERYVGAVLEAKGEREAWASVPEQLALADFLVSGAYDRHVRRMRQRYRARRDRLVAALAAQAPHIEVTGIAAGLHAVLRLPPGTERSVVRAAVWRGVALDGLAEFRHPGAVGDAPDGLVVGYATPPEHAYGAAVEALCGVLPPG
>NC_013929.1|WP_037728077.1|7671248_7672052_+|SAM-dependent-methyltransferase
MNGSPPVEIDTSRPHPARMYDWYLGGKDNYPVDEAMGRQMLALDPRVPVMAQVNRAFMHRSTRWLAENGVRQFLDIGTGIPTEPNLHQVAQRVAPDATVVYCDNDPIVLAHAAALLRGTPQGRTEYLQADVRDPHAIIEGAAKVLDLTRPVALSLIALLHFVPDQDGAHTLVRRLMSHLPSGSYLVVTHATADFTPEESKAATEKLKAAGVTLALRSREEFTRFFDGLELIDPGVEVPQHWHPELGEPVPGQDDGIIPGYGAVARKP
>NC_013929.1|WP_013004472.1|7670866_7671157_+|DUF397-domain-containing-protein
MEYIKSQPQSQPRTRKQSRTRVYNGMPARELGSEGWHKPWSGGNGGNCLEAMKLADGRIAVRQSTDPDGPALIYTPDEMNAFIQGAKAGVADFLLS
>NC_013929.1|WP_037728075.1|7669996_7670857_+|helix-turn-helix-domain-containing-protein
MSEPRSAPTVGQVVLGRRLLDLRERAGIRREEAGRILHVTAATVRRMETAEVALKIPYLQLLLKAYGVADEEAETFVRLAEDANKPGWWQRYHDILPGWFSMYVSLEGAAGLIRGYDPHFVPGLLQTEDYARAVMTSGAIGQTKPDDIERHVALRMQRQELLTRDDAPRLWCVMDETVLRRSVGGPAVMRAQIDRLLEAMELTHVTLQVAPFDTGPHPGTYGPFVLFRFAMPELPDMVYSEYLTGAVYLDDRSEVATHLEVMDRMAAQAATAQRTKEILRDLRKEL
>NC_013929.1|WP_037728085.1|7678863_7679991_-|magnesium-and-cobalt-transport-protein-CorA
MSMAGNLRKVTGLDKVGGLRRMARLARRRPRVDLSHPARSPLGTSVVNCVTYHKGVRSPGGRDVVEAVKQVRKHDHGFVWLGLHEPTQREFAGIAELFDLHPLAVEDAVEAHQRPKLERYGDTLFAVFKTVCYVEHTELTATSEVVHTGEIMVFVGADFVITVRHGRHGSLGPLREELEANTEQLSKGPAAVLHAIADHVVDDYLNVTDSVQTDIDQVESDVFAANGARVDPGRIYQLKRELLELKRAVAPLARPLLELTSRPIRVVEPEIQAYFRDVSDHLLRATEQIAAFDELLNSILQAHLAQVSVAQNEDMRRITAWAALIAVPTMVCGVYGMNFRYMPELHWKFGYPLVLGVIAMACATLYRGFKRNGWL
>NC_013929.1|WP_013004482.1|7680300_7681098_+|methyltransferase-domain-containing-protein
MMRTDGYLLDQRQAETGQGPDAFATLFDPTTFRHMEGFGLGSGWRCWEVGAGGTTVVSWLAKKVGPTGKVIATDTDISWAVPSVTRPPVEALVHHLGVDQPPADGFDLVHARLALAHATDRESALLSMIRALRPGGRLLIEDADPALQPLACLEESGPEQQLANRLHEAVRTLLVERGIDPAHGRRLPRLLRAAGLRGVGADAYFPVASPACAALESTTVGRLRGALVTANLATEEEIDRHLADVASGALDIAAPPLISAWGRKA
>NC_013929.1|WP_013004483.1|7681319_7682225_-|sugar-kinase
MSGALLVVGDVVTDVVARHRGPLAAGTDTASAIRTLPGGAGANVACWAAHWGCADVRLLGRVGTDGAEWHERELRASGVRPHLVVDPDAATGTVICLVDTGDAAERTFLTDSGAALRFDLDDWSPSLLDGVARLHLSGYLFFSEPSRALVSVALRSARARGVPVSVDPASAGFLRRLGVARFLSLVEGVDLLLPSRDEASLLTGLPDPADAAAKLSRLVPLVVVKQGAEGALVARNGDGAVSRIPATPAMPLDTTGAGDAFTGAFLATLLAGAEAEEAAAEGCGAGARAVEKVGGRPPVAG
>NC_013929.1|WP_173402926.1|7682226_7683165_-|pseudouridine-5'-phosphate-glycosidase
MREERQTGGERVLVVSEEVREAVDARRPVVALESTIIAHGLPRPRNLQVARELEEVVRQEGAVPATIAVLDGRPHIGLGKDQLERVANEDGIRKLGHRDLPLAVASGVSGATTVSATAQLAALAGVRVFATGGLGGVHREWTSTQDESADLGLLARTRITVVCAGVKSILDVPATLQRLETLGVAVAGYGTDRFPGFYLSDSGHPVEWTLRSPGEVADVMRAQDTLKGPESALIVANPVPEEEQLDPALHARVLAEALRACEAEGVTGQGVTPFLLSYLVRHTDGASLTANLAAVRGNVRLASRIATAWAGA
>NC_013929.1|WP_037728091.1|7683231_7683660_+|VOC-family-protein
MKENTTRLDHVVLWVREPVAAAAFYEEAVGLEPVRVSAYAEGRAPFPSVRLNDETLFDLMPLAMAETLTMVPGAADSAGHPVNHVCLALPGHAFDELRARLEEREVPVSAFSHDSFGARGAARRSFYFRDPDGNVLEARHYD
>NC_013929.1|WP_013004485.1|7683806_7684361_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNSHAQDEQRVVWAVIGTDIGPLLLAATDEGLVHVAFHATDAVRERTLDRLASRLGTTPVEAPGAPRLAEAIRQVEAYFAGERHDFDLPLDWSLISGFNRQVLRELASGVRYGSVVGYGDLARRVGQPGAAQAVGIAMGSNPLPVVVPCHRVVESDGGIGGFGGGLETKRKLLALEGVLPEPLF
>NC_013929.1|WP_037728092.1|7684444_7685317_-|glycerophosphodiester-phosphodiesterase
MHVRAVAAATTAFLGATVLLLPSSAAHAAADAENPLVVVAHRGASAYAPENTLAAVDKADEMGFEWVENDVQRTKDGRLVVLHDATLTRTTNVEELYPERAPWNVADFTAAEIARLDAGSWFGSDYAGARVPTLEQYMRRVTRNHQKLVLEIKNPQLYPGIEQQTLKVLGNEGWLGPEQLERLVIQSFGADTVRRVHELRPAVKTGLLGTPDIADLPEYATFSDQINSSYTTVSESYVATLHALQGPHGRPLEILTWTVNDAANARRVAGYGVNGIITNKPDVVREATQG
>NC_013929.1|WP_013004487.1|7685597_7686464_+|membrane-protein
MQGTVDGFSYGLVTPVVAYLMACLGGSLGLRCTTRSMLVDGGRRIGWLALGSAAIGSGIWTMHFVAMMGFKVLQAPVGYDPLMTFASLAVAIVMVGIGIFMVTSKGATGAALFTGGTITGLGIASMHYLGMAGLRLHGTLEYDTVTVAASVVIAVVAAIAALWAAGQVRGFLWSVGAGLVMGIAVSGMHYTGMAALDVHVHGTTTAPADGASSAGLLAPLIIGPLVFLLLAGVVVMFDPFMIMGRFHTVPVERRPGIPAQATAHTCRHPESRLAREHRERGSRTPQNR
>NC_013929.1|WP_013004488.1|7686503_7688633_+|excinuclease-ABC-subunit-UvrB
MRPVSKIERTVAPLEVVSSYQPSGDQPTAIAELARRIGAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTPQEYVDRMVPLRVGEEFDRDELLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTGEIISDDQQLYVFPASHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMHFDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYLSATPGQYELSRSDGHVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRQRTEKDERVLVTTLTKKMAEDLTDYFLELGIQVRYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMYADRITPAMAKAIDETNRRREKQVAYNKAHGIDPQPLRKKINDIVARIAREDVDTEQLLGTGYRQQKDGKAAKAPVPALKGRAAGAARGAAKDAGPTDRPAAELAQQIEEMTQRMRAAAADLQFEIAARLRDEVSEMKKELRQMREAGQA
>NC_013929.1|WP_013004489.1|7688805_7689384_+|tellurium-resistance-TerZ-family-protein
MTVNMTKGQAISLQKNDGGSLTAVRMGLGWQAAPRRGLFGSRTREIDLDASAVLFADKQPVDVVFFRHLVSDDGSVRHTGDNLVGGVGQGGDDEAILVDLARVPVHIDQIVFTVNSFTGQTFQEVQNAFCRLVDETNGQELARYTLAGGGQYTAQIMAKVHRAGAGWQMTAIGTPANGRTFQDLMPAILPVL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	324639-324663	3	0.88
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	39964-39988	3	0.88
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	368817-368841	3	0.88
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	61497-61521	3	0.88
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	504075-504099	3	0.88
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MG593803	Streptomyces phage Rowa, complete genome	12057-12081	3	0.88
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	MF063068	Pseudomonas phage Noxifer, complete genome	90569-90594	4	0.846
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	416961-416986	4	0.846
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	159012-159036	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP048631	Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence	152543-152567	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_MF600313	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence	55467-55491	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	1045946-1045970	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MN694585	Marine virus AFVG_250M655, complete genome	22404-22428	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MG962376	Mycobacterium phage Thumb, complete genome	19792-19816	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MK919469	Gordonia phage Madeline, complete genome	25986-26010	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	KJ567046	Mycobacterium phage Damien, complete genome	19792-19816	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MN010756	Mycobacterium phage Phreeze, complete genome	19792-19816	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_023578	Mycobacterium phage Oaker, complete genome	20049-20073	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MT521996	Mycobacterium phage Beckerton, complete genome	20329-20353	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MH509445	Mycobacterium phage Cborch11, complete genome	19791-19815	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_011292	Mycobacterium phage Konstantine, complete genome	20993-21017	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	54204-54228	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	684499-684523	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	60237-60261	4	0.84
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_048021	Gordonia phage Daredevil, complete genome	81604-81628	4	0.84
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	546401-546426	5	0.808
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	KY622015	Shewanella phage SppYZU01, complete genome	41081-41106	5	0.808
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	NZ_CP025614	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed2, complete sequence	60472-60497	5	0.808
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	NC_007949	Polaromonas sp. JS666 plasmid 1, complete sequence	144783-144808	5	0.808
NC_013929_4	4.1\|5657894\|25\|NC_013929\|CRISPRCasFinder	5657894-5657918	25	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	273570-273594	5	0.8
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1109697-1109721	5	0.8
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	91766-91790	5	0.8
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	MN284901	Microbacterium phage YuuY, complete genome	37871-37895	5	0.8
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	MG428990	Klebsiella phage Menlow, complete genome	100413-100438	6	0.769
NC_013929_2	2.1\|4329246\|26\|NC_013929\|CRISPRCasFinder	4329246-4329271	26	MN045230	Klebsiella phage Magnus, complete genome	101795-101820	6	0.769
NC_013929_6	6.1\|5775896\|25\|NC_013929\|CRISPRCasFinder	5775896-5775920	25	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	240227-240251	6	0.76
NC_013929_6	6.2\|5775944\|31\|NC_013929\|CRISPRCasFinder	5775944-5775974	31	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	520714-520744	9	0.71
NC_013929_6	6.2\|5775944\|31\|NC_013929\|CRISPRCasFinder	5775944-5775974	31	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	300809-300839	9	0.71
NC_013929_6	6.2\|5775944\|31\|NC_013929\|CRISPRCasFinder	5775944-5775974	31	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	151056-151086	9	0.71
NC_013929_6	6.2\|5775944\|31\|NC_013929\|CRISPRCasFinder	5775944-5775974	31	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	180470-180500	9	0.71

1. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 3, identity: 0.88

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggtggtggtgagggtgtcgtcggcg	Protospacer
  ********* *************

2. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 3, identity: 0.88

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
gttggtggggatggtggcgtcggcg	Protospacer
 ******* ******* ********

3. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 3, identity: 0.88

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttggtggtgatggtgtcctgggcc	Protospacer
****************** * ***

4. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cgtggtggtgatggtggcgacggcg	Protospacer
* ************** ** *****

5. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cgtggtggtgatgccgtcgtcggcg	Protospacer
* *********** .**********

6. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MG593803 (Streptomyces phage Rowa, complete genome) position: , mismatch: 3, identity: 0.88

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cgtggtggtgatggtgtcgttgtcg	Protospacer
* ******************.* **

7. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to MF063068 (Pseudomonas phage Noxifer, complete genome) position: , mismatch: 4, identity: 0.846

aacgacggcggcgactgcctggaaat	CRISPR spacer
aactacggcggcgacagcctggaaga	Protospacer
*** *********** ********.

8. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 4, identity: 0.846

aacgacggcggcgactgcctggaaat	CRISPR spacer
caggacggcggcgccagcctggaaat	Protospacer
 * ********** * **********

9. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggaggtggtgatggtgtcgtcgccg	Protospacer
   ******************* **

10. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP048631 (Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
gccgatggtgatggtgtcgtcggcg	Protospacer
 ..*.********************

11. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_MF600313 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggcggcggtgatggtgtcgtcggcg	Protospacer
  .**.*******************

12. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggaggtggtgatggtgtcgtcgccg	Protospacer
   ******************* **

13. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MN694585 (Marine virus AFVG_250M655, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
aatggtggtgatggtggcctcggcg	Protospacer
  ************** * ******

14. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MG962376 (Mycobacterium phage Thumb, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

15. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MK919469 (Gordonia phage Madeline, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttggtggtgacggtggcgtcgggt	Protospacer
***********.**** ******

16. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to KJ567046 (Mycobacterium phage Damien, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

17. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MN010756 (Mycobacterium phage Phreeze, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

18. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_023578 (Mycobacterium phage Oaker, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

19. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MT521996 (Mycobacterium phage Beckerton, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

20. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MH509445 (Mycobacterium phage Cborch11, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

21. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_011292 (Mycobacterium phage Konstantine, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttgatggtgatggtgtcttcggac	Protospacer
****.************* ****

22. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttggtggtgatggtgccgttgggc	Protospacer
****************.***.**

23. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggtggtggtgatggtgtcgtaggtg	Protospacer
  ****************** **.*

24. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggtggcggtgatggtgacgtcggcg	Protospacer
  ***.********** ********

25. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_048021 (Gordonia phage Daredevil, complete genome) position: , mismatch: 4, identity: 0.84

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
cttggaggtgatggtgtcgccggac	Protospacer
***** *************.***

26. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 5, identity: 0.808

aacgacggcggcgactgcctggaaat	CRISPR spacer
cacgacggcggcgactgcctcgatcc	Protospacer
 ******************* **  .

27. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to KY622015 (Shewanella phage SppYZU01, complete genome) position: , mismatch: 5, identity: 0.808

aacgacggcggcgactgcctggaaat	CRISPR spacer
attaccggcggcgacggcctggaaat	Protospacer
* .. ********** **********

28. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to NZ_CP025614 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

aacgacggcggcgactgcctggaaat	CRISPR spacer
ctggacagcggcggctgcctggaaat	Protospacer
   ***.******.************

29. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to NC_007949 (Polaromonas sp. JS666 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.808

aacgacggcggcgactgcctggaaat	CRISPR spacer
gtcgacggcggcaacggcctggaaac	Protospacer
. **********.** *********.

30. spacer 4.1|5657894|25|NC_013929|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

cctggcttttcagcgccggctccgg	CRISPR spacer
actggcttttcagcgccggcgtcac	Protospacer
 ******************* .*.

31. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 5, identity: 0.8

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
gacggtggtgatggtgttgtcggcc	Protospacer
  .**************.******

32. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 5, identity: 0.8

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
ggtggtggtgatggtgacgtcgggc	Protospacer
  ************** ******

33. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to MN284901 (Microbacterium phage YuuY, complete genome) position: , mismatch: 5, identity: 0.8

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
gaaggtggtgatggtgtcgacggcc	Protospacer
   **************** ****

34. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to MG428990 (Klebsiella phage Menlow, complete genome) position: , mismatch: 6, identity: 0.769

aacgacggcggcgactgcctggaaat	CRISPR spacer
tacgaaggcggcgactgcctggtgga	Protospacer
 **** **************** ..

35. spacer 2.1|4329246|26|NC_013929|CRISPRCasFinder matches to MN045230 (Klebsiella phage Magnus, complete genome) position: , mismatch: 6, identity: 0.769

aacgacggcggcgactgcctggaaat	CRISPR spacer
tacgaaggcggcgactgcctggtgga	Protospacer
 **** **************** ..

36. spacer 6.1|5775896|25|NC_013929|CRISPRCasFinder matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 6, identity: 0.76

cttggtggtgatggtgtcgtcggcg	CRISPR spacer
acgcgtggtgatggtgtcgtcggga	Protospacer
 .  ******************* .

37. spacer 6.2|5775944|31|NC_013929|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 9, identity: 0.71

ctgcggggtggcgaggccgccaccctccttc	CRISPR spacer
atgcgggccggcgaggccgccacccgggcga	Protospacer
 ****** .****************   .

38. spacer 6.2|5775944|31|NC_013929|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 9, identity: 0.71

ctgcggggtggcgaggccgccaccctccttc	CRISPR spacer
ggggagggtggagaggcctccaccctccccg	Protospacer
  * .****** ****** *********..

39. spacer 6.2|5775944|31|NC_013929|CRISPRCasFinder matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 9, identity: 0.71

ctgcggggtggcgaggccgccaccctccttc	CRISPR spacer
ggggagggtggagaggcctccaccctccccg	Protospacer
  * .****** ****** *********..

40. spacer 6.2|5775944|31|NC_013929|CRISPRCasFinder matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 9, identity: 0.71

ctgcggggtggcgaggccgccaccctccttc	CRISPR spacer
ggggagggtggagaggcctccaccctccccg	Protospacer
  * .****** ****** *********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4935 : 79000

Gordonia_phage(16.67%)

integrase,transposase

attL 2283:2299|attR 21433:21449

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2283:2299	attL	NA	NA	NA	NA
WP_106437354.1\|4935_7113_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_106437214.1\|7526_8702_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_049875829.1\|8876_9578_-	hypothetical protein	NA	NA	NA	NA
WP_012998002.1\|9852_10953_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_012998003.1\|10949_13493_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_013006455.1\|13489_14794_-	hypothetical protein	NA	NA	NA	NA
WP_013006454.1\|15455_15791_+	hypothetical protein	NA	NA	NA	NA
WP_012998006.1\|15837_16983_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012998007.1\|16979_17270_+	hypothetical protein	NA	NA	NA	NA
WP_012998008.1\|17300_18194_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	8.7e-30	30.5
WP_012998009.1\|18190_18496_-\|transposase	transposase	NA	NA	NA	NA
WP_012998012.1\|19379_19562_-	hypothetical protein	NA	NA	NA	NA
WP_012998013.1\|19767_20592_+	hypothetical protein	NA	NA	NA	NA
WP_012998014.1\|20669_20855_-	hypothetical protein	NA	NA	NA	NA
WP_012998015.1\|21281_21518_-	hypothetical protein	NA	NA	NA	NA
21433:21449	attR	NA	NA	NA	NA
WP_012998016.1\|21635_22469_-	hypothetical protein	NA	NA	NA	NA
WP_012998017.1\|22449_23355_-	aldo/keto reductase	NA	NA	NA	NA
WP_012998018.1\|23351_24524_-	cupin domain-containing protein	A0A1D7SFD0	Cyanophage	6.8e-06	25.2
WP_167362005.1\|24545_24695_-	hypothetical protein	NA	NA	NA	NA
WP_106437355.1\|25194_26190_+	hypothetical protein	NA	NA	NA	NA
WP_012998020.1\|26196_26682_-	hypothetical protein	NA	NA	NA	NA
WP_106437356.1\|26835_27861_-	hypothetical protein	NA	NA	NA	NA
WP_012998023.1\|28495_30724_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012998024.1\|30738_31296_+	transcriptional regulator	NA	NA	NA	NA
WP_173402834.1\|34360_34777_-	hypothetical protein	NA	NA	NA	NA
WP_012998027.1\|35383_35926_+	hypothetical protein	NA	NA	NA	NA
WP_012998028.1\|36110_37106_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041668749.1\|37023_37590_-	hypothetical protein	NA	NA	NA	NA
WP_041668741.1\|37990_39295_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_037723418.1\|40910_42287_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	2.5e-124	54.0
WP_173402954.1\|42940_43549_+\|transposase	transposase	S5VXX4	Leptospira_phage	4.6e-06	30.1
WP_005476736.1\|43865_44918_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_005476733.1\|47588_48938_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005476731.1\|49098_49464_-	hypothetical protein	NA	NA	NA	NA
WP_012998036.1\|49460_50489_-	aldo/keto reductase	NA	NA	NA	NA
WP_012998037.1\|50485_51244_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_005476725.1\|51240_52578_-	L-fuconate dehydratase	NA	NA	NA	NA
WP_005476723.1\|52592_53444_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_169374330.1\|54176_54689_+\|transposase	transposase	NA	NA	NA	NA
WP_005476718.1\|56280_57648_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_005476716.1\|57858_58704_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_005476714.1\|58700_59540_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_012998038.1\|59536_62071_+	glycoside hydrolase N-terminal domain-containing protein	NA	NA	NA	NA
WP_005476711.1\|62055_62211_+	hypothetical protein	NA	NA	NA	NA
WP_106437217.1\|63261_65919_+	BNR repeat-containing protein	A0A0S2SXR0	Bacillus_phage	1.6e-39	37.6
WP_005476707.1\|66570_67704_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005476706.1\|67953_68928_-	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	2.3e-20	33.2
WP_028796820.1\|70366_72415_+	alpha-L-fucosidase	NA	NA	NA	NA
WP_012998042.1\|73301_74942_+	RICIN domain-containing protein	NA	NA	NA	NA
WP_012998044.1\|75775_76051_-	hypothetical protein	NA	NA	NA	NA
WP_012998045.1\|76636_77683_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012998072.1\|78004_79000_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

88875 : 141396

Gordonia_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173402954.1\|88875_89484_-\|transposase	transposase	S5VXX4	Leptospira_phage	4.6e-06	30.1
WP_041668893.1\|91613_91922_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.2e-18	52.9
WP_012998059.1\|91918_92836_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.2e-47	41.4
WP_041668748.1\|92978_93149_-	hypothetical protein	NA	NA	NA	NA
WP_012998064.1\|96622_98653_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012998065.1\|98955_100848_+	NAD-binding protein	NA	NA	NA	NA
WP_148274167.1\|102057_102255_-	hypothetical protein	NA	NA	NA	NA
WP_012998067.1\|102567_104058_+	serine/threonine protein kinase	D2XAD0	Marseillevirus	3.9e-14	28.2
WP_012998068.1\|104592_105996_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_041670255.1\|106001_106580_-	hypothetical protein	NA	NA	NA	NA
WP_041668749.1\|108602_109169_+	hypothetical protein	NA	NA	NA	NA
WP_012998072.1\|109086_110082_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012998074.1\|111787_113008_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_041668750.1\|113004_114402_-	MFS transporter	NA	NA	NA	NA
WP_012998078.1\|116090_116765_-	response regulator transcription factor	NA	NA	NA	NA
WP_049875630.1\|116777_118022_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_012998081.1\|119146_121054_-	cellulase family glycosylhydrolase	A0A248SL44	Klebsiella_phage	3.2e-21	27.9
WP_012998082.1\|121385_121829_+	hypothetical protein	NA	NA	NA	NA
WP_012998083.1\|122257_122848_-	NADP oxidoreductase	NA	NA	NA	NA
WP_012998084.1\|122889_123708_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_041668758.1\|123847_124753_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041668760.1\|126770_127622_+	DUF4394 domain-containing protein	A0A167R2B9	Powai_lake_megavirus	5.8e-23	37.7
WP_012998090.1\|128595_129168_-	hypothetical protein	NA	NA	NA	NA
WP_041670259.1\|129167_131705_-	type II toxin-antitoxin system prevent-host-death family antitoxin	A0A286MQH7	Mycobacterium_phage	1.5e-05	26.5
WP_041668762.1\|132085_132334_-	hypothetical protein	NA	NA	NA	NA
WP_041668763.1\|134259_136341_-\|transposase	ISAzo13 family transposase	NA	NA	NA	NA
WP_012998095.1\|138212_139085_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-40	38.2
WP_041668767.1\|139081_139390_-\|transposase	IS3 family transposase	A0A0C5AJ30	Paenibacillus_phage	6.1e-07	37.2
WP_041668768.1\|139777_140107_+	AMP-binding protein	NA	NA	NA	NA
WP_041668893.1\|140173_140482_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.2e-18	52.9
WP_012998059.1\|140478_141396_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.2e-47	41.4

DBSCAN-SWA_3

1590254 : 1646583

Bacillus_phage(50.0%)

integrase,transposase

attL 1581030:1581046|attR 1591270:1591286

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1581030:1581046	attL	NA	NA	NA	NA
WP_148274186.1\|1590254_1591178_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012999305.1\|1591954_1593235_-	triacylglycerol lipase	NA	NA	NA	NA
1591270:1591286	attR	NA	NA	NA	NA
WP_012999308.1\|1594671_1595742_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_106437235.1\|1596154_1597195_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012999310.1\|1597556_1598759_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012999311.1\|1599054_1602279_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.1e-53	22.2
WP_012999312.1\|1602475_1603150_-	response regulator transcription factor	NA	NA	NA	NA
WP_158512224.1\|1603146_1604364_-	sensor histidine kinase	NA	NA	NA	NA
WP_037724137.1\|1604518_1605133_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_012999315.1\|1605178_1606786_+	MFS transporter	NA	NA	NA	NA
WP_012999316.1\|1607354_1608890_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012999317.1\|1608886_1609630_-	response regulator transcription factor	W8CYM9	Bacillus_phage	7.8e-32	32.0
WP_037724136.1\|1609681_1611922_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_012999319.1\|1611939_1613229_-	bifunctional glycosyltransferase family 2/GtrA family protein	NA	NA	NA	NA
WP_012999320.1\|1613381_1614218_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_012999321.1\|1614248_1615820_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012999322.1\|1615816_1616563_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.5e-30	31.7
WP_049875659.1\|1616648_1618430_-	CotH kinase family protein	NA	NA	NA	NA
WP_012999324.1\|1618429_1619107_-	DUF4956 domain-containing protein	NA	NA	NA	NA
WP_078580069.1\|1619103_1620030_-	polyphosphate polymerase domain-containing protein	NA	NA	NA	NA
WP_158512225.1\|1620430_1621177_+\|transposase	transposase	NA	NA	NA	NA
WP_078580071.1\|1621263_1621497_+	hypothetical protein	NA	NA	NA	NA
WP_106437236.1\|1621632_1622256_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_012999329.1\|1623707_1624967_-	cytochrome P450	NA	NA	NA	NA
WP_012999330.1\|1625726_1626962_-	MFS transporter	NA	NA	NA	NA
WP_158512226.1\|1627419_1627902_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
WP_049875661.1\|1628089_1628344_-\|transposase	transposase	NA	NA	NA	NA
WP_012999333.1\|1628669_1629014_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041668929.1\|1629160_1630030_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	7.2e-21	43.4
WP_148274188.1\|1629935_1630994_-\|transposase	transposase	NA	NA	NA	NA
WP_158512227.1\|1631174_1631720_+	hypothetical protein	NA	NA	NA	NA
WP_046913750.1\|1632188_1633481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012999339.1\|1633676_1635329_+	MFS transporter	NA	NA	NA	NA
WP_046913757.1\|1635378_1636617_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012999341.1\|1636756_1638010_+	oxidoreductase	NA	NA	NA	NA
WP_012999342.1\|1638610_1640143_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_012999345.1\|1642006_1642780_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012999346.1\|1642781_1644254_-	carotenoid oxygenase family protein	NA	NA	NA	NA
WP_012999347.1\|1644541_1645393_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012999348.1\|1646226_1646583_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

5400470 : 5427277

Gordonia_phage(20.0%)

portal,integrase,capsid,terminase,head,protease

attL 5423808:5423823|attR 5432483:5432498

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013002463.1\|5400470_5401952_-\|capsid	phage major capsid protein	A0A1B3B249	Gordonia_phage	1.4e-154	58.3
WP_041669515.1\|5401951_5402944_-\|head,protease	HK97 family phage prohead protease	G9FHH6	Rhodococcus_phage	2.4e-57	59.7
WP_106437431.1\|5402943_5404290_-\|portal	phage portal protein	A0A1B3AYS8	Gordonia_phage	4.5e-131	53.9
WP_041669517.1\|5404295_5404475_-	hypothetical protein	NA	NA	NA	NA
WP_173402899.1\|5404456_5405995_-\|terminase	terminase	G9FHH3	Rhodococcus_phage	1.1e-85	39.7
WP_106437432.1\|5405975_5406251_-	hypothetical protein	NA	NA	NA	NA
WP_158512256.1\|5406261_5406501_-	HNH endonuclease	A0A1L6BZD8	Pasteurella_phage	2.0e-10	42.6
WP_013002470.1\|5407177_5407621_-	hypothetical protein	A0A0F6SJL7	Mycobacterium_phage	1.9e-25	43.9
WP_013002471.1\|5407817_5408108_-	HNH endonuclease	NA	NA	NA	NA
WP_041669519.1\|5408120_5408408_-	hypothetical protein	NA	NA	NA	NA
WP_013002473.1\|5408438_5408666_-	hypothetical protein	NA	NA	NA	NA
WP_013002474.1\|5408684_5408978_-	hypothetical protein	NA	NA	NA	NA
WP_013002475.1\|5409162_5409375_-	hypothetical protein	NA	NA	NA	NA
WP_013002476.1\|5409390_5409756_-	hypothetical protein	NA	NA	NA	NA
WP_013002477.1\|5409943_5412037_-	AAA family ATPase	NA	NA	NA	NA
WP_013002478.1\|5412124_5412307_-	hypothetical protein	NA	NA	NA	NA
WP_013002479.1\|5412309_5412510_-	hypothetical protein	NA	NA	NA	NA
WP_041669521.1\|5412610_5412910_-	hypothetical protein	NA	NA	NA	NA
WP_013002481.1\|5412906_5413083_-	hypothetical protein	NA	NA	NA	NA
WP_013002482.1\|5413079_5414201_-	hypothetical protein	A0A1P8VW26	Streptomyces_phage	1.2e-31	40.8
WP_013002483.1\|5414197_5414578_-	hypothetical protein	NA	NA	NA	NA
WP_013002484.1\|5414574_5414943_-	hypothetical protein	NA	NA	NA	NA
WP_013002486.1\|5415254_5415920_-	hypothetical protein	NA	NA	NA	NA
WP_013002487.1\|5415916_5416084_-	hypothetical protein	NA	NA	NA	NA
WP_013002488.1\|5416093_5416618_-	single-stranded DNA-binding protein	A0A222ZFS3	Arthrobacter_phage	1.0e-46	54.3
WP_013002489.1\|5416617_5416863_-	hypothetical protein	NA	NA	NA	NA
WP_013002490.1\|5417104_5419795_-	hypothetical protein	A0A023W5H8	Mycobacterium_phage	7.5e-08	30.8
WP_013002491.1\|5419791_5420094_-	hypothetical protein	NA	NA	NA	NA
WP_013002492.1\|5420194_5420437_-	hypothetical protein	NA	NA	NA	NA
WP_013002493.1\|5420433_5420751_-	hypothetical protein	NA	NA	NA	NA
WP_013002494.1\|5420833_5421484_-	hypothetical protein	NA	NA	NA	NA
WP_148274222.1\|5421480_5422053_-	hypothetical protein	NA	NA	NA	NA
WP_158512257.1\|5422630_5423662_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013002499.1\|5423661_5425341_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
5423808:5423823	attL	NA	NA	NA	NA
WP_013002500.1\|5425639_5427277_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	4.2e-14	30.9
WP_013002500.1\|5425639_5427277_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	4.2e-14	30.9
5432483:5432498	attR	NA	NA	NA	NA

DBSCAN-SWA_5

6772104 : 6778311

Mycobacterium_phage(33.33%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013003684.1\|6772104_6772488_+	hypothetical protein	A0A249XPH5	Mycobacterium_phage	1.7e-22	51.5
WP_013003685.1\|6772484_6773108_+	3'-5' exoribonuclease	A0A142UMD2	Mycobacterium_phage	1.9e-39	51.4
WP_013003686.1\|6773107_6773380_+	hypothetical protein	NA	NA	NA	NA
WP_013003688.1\|6773678_6774131_+	hypothetical protein	A0A2L1IZL2	Gordonia_phage	7.8e-19	40.6
WP_013003689.1\|6774134_6775772_+\|terminase	terminase	A0A159B6A7	Gordonia_phage	3.9e-145	49.5
WP_013003690.1\|6775786_6777238_+\|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	1.2e-76	41.9
WP_106437451.1\|6777255_6778311_+	hypothetical protein	A0A2H5BLR1	Streptomyces_phage	7.1e-39	34.2

DBSCAN-SWA_6

7165976 : 7195727

Streptomyces_phage(70.0%)

portal,tail,capsid,terminase,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041669853.1\|7165976_7166930_+	hypothetical protein	A0A142K671	Streptomyces_phage	7.6e-32	59.8
WP_041669854.1\|7166947_7167295_+	hypothetical protein	NA	NA	NA	NA
WP_013004036.1\|7167291_7167906_+	hypothetical protein	NA	NA	NA	NA
WP_013004037.1\|7167902_7168523_+	hypothetical protein	A0A0M4QTU3	Streptomyces_phage	7.4e-12	41.1
WP_013004038.1\|7168539_7168959_+	hypothetical protein	NA	NA	NA	NA
WP_013004039.1\|7168955_7169444_+	hypothetical protein	NA	NA	NA	NA
WP_013004040.1\|7169560_7170280_+	hypothetical protein	A0A142K676	Streptomyces_phage	2.7e-37	41.4
WP_041669858.1\|7170441_7170705_+	hypothetical protein	A0A142K678	Streptomyces_phage	5.0e-18	55.8
WP_013004042.1\|7170701_7171046_+	hypothetical protein	NA	NA	NA	NA
WP_013004043.1\|7171172_7171364_+	hypothetical protein	NA	NA	NA	NA
WP_041669860.1\|7171420_7171816_+	HNH endonuclease	NA	NA	NA	NA
WP_013004045.1\|7171835_7172066_+	hypothetical protein	NA	NA	NA	NA
WP_013004046.1\|7172183_7172663_+\|terminase	phage terminase small subunit P27 family	A0A1B3B1V2	Gordonia_phage	3.1e-42	57.8
WP_013004047.1\|7172631_7174428_+\|terminase	terminase large subunit	A0A1B3AYP7	Gordonia_phage	8.9e-191	56.8
WP_013004048.1\|7174443_7175787_+\|portal	phage portal protein	A0A0U4K705	Arthrobacter_phage	2.2e-69	43.6
WP_013004049.1\|7175783_7176482_+	hypothetical protein	A0A173G9F1	Propionibacterium_phage	2.9e-12	31.0
WP_013004050.1\|7176484_7176763_+	hypothetical protein	NA	NA	NA	NA
WP_013004051.1\|7176765_7177569_+\|head,protease	HK97 family phage prohead protease	G3M599	Mycobacterium_phage	2.8e-43	45.1
WP_013004052.1\|7177565_7178861_+\|capsid	phage major capsid protein	Q7Y5K8	Xanthomonas_virus	4.2e-17	29.8
WP_013004053.1\|7178860_7179244_+	hypothetical protein	NA	NA	NA	NA
WP_013004054.1\|7179240_7179741_+	DUF2190 family protein	NA	NA	NA	NA
WP_013004055.1\|7179743_7180286_+	hypothetical protein	NA	NA	NA	NA
WP_013004056.1\|7180285_7180627_+	hypothetical protein	NA	NA	NA	NA
WP_013004057.1\|7180623_7180929_+	phage protein	NA	NA	NA	NA
WP_013004058.1\|7180928_7181312_+	hypothetical protein	NA	NA	NA	NA
WP_041669864.1\|7182459_7182783_+	hypothetical protein	A0A0K1Y596	Streptomyces_phage	5.2e-17	41.1
WP_041671087.1\|7182821_7183205_+	hypothetical protein	A0A0K1Y5B2	Streptomyces_phage	9.2e-21	49.2
WP_041669866.1\|7183209_7187436_+\|tail	phage tail tape measure protein	A0A2H5BLS1	Streptomyces_phage	6.1e-190	45.7
WP_013004063.1\|7187441_7188332_+	hypothetical protein	A0A0K1Y5X3	Streptomyces_phage	2.2e-89	59.2
WP_013004064.1\|7188331_7189477_+	hypothetical protein	A0A0K1Y599	Streptomyces_phage	3.3e-122	58.3
WP_041669869.1\|7189476_7190409_+	hypothetical protein	A0A0K1Y5A0	Streptomyces_phage	2.4e-99	61.9
WP_013004066.1\|7190423_7191047_+	hypothetical protein	A0A0K1Y5B7	Streptomyces_phage	2.3e-61	57.8
WP_013004067.1\|7191060_7193529_+	right-handed parallel beta-helix repeat-containing protein	A0A0K1Y5U2	Streptomyces_phage	1.2e-121	41.6
WP_173402919.1\|7193594_7194344_+	N-acetylmuramoyl-L-alanine amidase	A0A0K1Y5X7	Streptomyces_phage	1.7e-87	60.0
WP_013004069.1\|7194351_7194762_+	hypothetical protein	NA	NA	NA	NA
WP_013004070.1\|7194771_7195062_+	hypothetical protein	NA	NA	NA	NA
WP_013004071.1\|7195058_7195727_+	collagen-like protein	A0A0M4QTS6	Streptomyces_phage	1.1e-08	56.5

DBSCAN-SWA_7

10120679 : 10143760

Burkholderia_virus(50.0%)

integrase,transposase

attL 10135944:10135956|attR 10143847:10143859

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012998028.1\|10120679_10121675_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013006445.1\|10121728_10122592_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_086022921.1\|10123256_10124508_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.1e-74	53.6
WP_148274253.1\|10124568_10124952_-	hypothetical protein	NA	NA	NA	NA
WP_049875828.1\|10125745_10127362_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_013006450.1\|10127556_10128072_+	hypothetical protein	NA	NA	NA	NA
WP_013006452.1\|10128939_10129284_+	hypothetical protein	NA	NA	NA	NA
WP_013001075.1\|10130199_10130505_+\|transposase	transposase	NA	NA	NA	NA
WP_012998008.1\|10130501_10131395_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	8.7e-30	30.5
WP_012998007.1\|10131425_10131716_-	hypothetical protein	NA	NA	NA	NA
WP_012998006.1\|10131712_10132858_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013006454.1\|10132904_10133240_-	hypothetical protein	NA	NA	NA	NA
WP_013006455.1\|10133901_10135206_+	hypothetical protein	NA	NA	NA	NA
WP_012998003.1\|10135202_10137746_+	ThiF family adenylyltransferase	NA	NA	NA	NA
10135944:10135956	attL	NA	NA	NA	NA
WP_012998002.1\|10137742_10138843_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_049875829.1\|10139117_10139819_+	hypothetical protein	NA	NA	NA	NA
WP_106437214.1\|10139993_10141169_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_106437354.1\|10141582_10143760_+\|integrase	site-specific integrase	NA	NA	NA	NA
10143847:10143859	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013929

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection