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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014215 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome 5 crisprs DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,csa3,DinG,WYL 1 12 5 0

Results visualization

1. NC_014215
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014215_1 276536-276649 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014215_2 441264-443689 Unclear NA
33 spacers
cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014215_3 652209-652301 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014215_4 775005-775102 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014215_5 2215874-2216038 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_014215_4 4.1|775029|50|NC_014215|CRISPRCasFinder 775029-775078 50 NC_014215.1 774992-775041 2 0.96

1. spacer 4.1|775029|50|NC_014215|CRISPRCasFinder matches to position: 774992-775041, mismatch: 2, identity: 0.96

tgtggtggatccagtgggtcagcttgttgggctgacctgtggtggatcca	CRISPR spacer
tgtggtggatcccgtgggtcagcctgttgggctgacctgtggtggatcca	Protospacer
************ **********.**************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 NC_041891 Propionibacterium phage B22, complete genome 25326-25361 0 1.0
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 NC_041894 Propionibacterium phage E6, complete genome 28097-28132 0 1.0
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 NC_041894 Propionibacterium phage E6, complete genome 28786-28821 0 1.0
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 NC_041890 Propionibacterium phage Anatole, complete genome 26199-26234 0 1.0
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 KX620752 Propionibacterium phage E1, complete genome 26199-26234 0 1.0
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 KX620754 Propionibacterium phage G4, complete genome 32604-32639 0 1.0
NC_014215_2 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441883-441918 36 NC_041892 Propionibacterium phage B3, complete genome 25456-25491 0 1.0
NC_014215_2 2.4|441520|40|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441520-441559 40 KX620751 Propionibacterium phage Doucette, complete genome 32590-32629 1 0.975
NC_014215_2 2.4|441520|40|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441520-441559 40 NC_041892 Propionibacterium phage B3, complete genome 30396-30435 1 0.975
NC_014215_2 2.7|441739|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441739-441775 37 KU984979 Propionibacterium phage PFR1, complete genome 2829-2865 1 0.973
NC_014215_2 2.7|441739|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441739-441775 37 NC_031108 Propionibacterium phage PFR2, complete genome 2829-2865 1 0.973
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_019351 Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence 2528-2563 1 0.972
NC_014215_5 5.3|2215994|21|NC_014215|CRISPRCasFinder 2215994-2216014 21 NZ_CP035418 Leisingera sp. NJS204 plasmid unnamed1, complete sequence 24862-24882 1 0.952
NC_014215_5 5.3|2215994|21|NC_014215|CRISPRCasFinder 2215994-2216014 21 NZ_CP041156 Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence 73773-73793 1 0.952
NC_014215_5 5.3|2215994|21|NC_014215|CRISPRCasFinder 2215994-2216014 21 NZ_CP038237 Leisingera sp. NJS201 plasmid unnamed3, complete sequence 106383-106403 1 0.952
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 47914-47937 2 0.917
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_AP017656 Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence 121074-121097 2 0.917
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_CP018821 Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence 296836-296859 2 0.917
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 MH444512 Bifidobacterium phage Willi, complete genome 3528-3551 2 0.917
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 MK932884 Bifidobacterium phage PMBT6, complete genome 3528-3551 2 0.917
NC_014215_2 2.23|442892|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 442892-442927 36 NC_041892 Propionibacterium phage B3, complete genome 8282-8317 3 0.917
NC_014215_2 2.27|443183|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443183-443219 37 AF428260 Propionibacterium phage phiB5, complete genome 4484-4520 3 0.919
NC_014215_2 2.27|443183|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443183-443219 37 NC_003460 Propionibacterium phage B5, complete genome 4484-4520 3 0.919
NC_014215_5 5.1|2215898|24|NC_014215|CRISPRCasFinder 2215898-2215921 24 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 1387809-1387832 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 499907-499930 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_AP014707 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence 49875-49898 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 MT110073 Stenotrophomonas phage vB_SmaS_DLP_3, complete genome 32428-32451 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 71885-71908 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 KC170282 Uncultured bacterium plasmid pMBUI6, complete sequence 3102-3125 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 GQ919031 Streptomyces phage ZL12, complete genome 49155-49178 3 0.875
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_CP054842 Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence 106401-106424 4 0.833
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 415999-416022 4 0.833
NC_014215_5 5.2|2215946|24|NC_014215|CRISPRCasFinder 2215946-2215969 24 MT939492 Xanthomonas phage Xoo-sp14, complete genome 230325-230348 4 0.833
NC_014215_2 2.10|441955|35|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441955-441989 35 NC_041891 Propionibacterium phage B22, complete genome 25076-25110 5 0.857
NC_014215_2 2.10|441955|35|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441955-441989 35 NC_041894 Propionibacterium phage E6, complete genome 27847-27881 5 0.857
NC_014215_2 2.23|442892|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 442892-442927 36 NC_041890 Propionibacterium phage Anatole, complete genome 8282-8317 5 0.861
NC_014215_2 2.23|442892|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 442892-442927 36 KX620752 Propionibacterium phage E1, complete genome 8282-8317 5 0.861
NC_014215_2 2.26|443109|38|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443109-443146 38 AF428260 Propionibacterium phage phiB5, complete genome 1508-1545 5 0.868
NC_014215_2 2.26|443109|38|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443109-443146 38 NC_003460 Propionibacterium phage B5, complete genome 1508-1545 5 0.868
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 CP034574 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence 4659-4694 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016747 Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1A, complete sequence 39948-39983 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016698 Lactococcus lactis subsp. lactis strain 229 plasmid p229E, complete sequence 4659-4694 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_015862 Lactococcus lactis subsp. lactis plasmid pIL4, complete sequence 318-353 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP051519 Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence 3929-3964 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016687 Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence 33821-33856 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_019430 Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence 80206-80241 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP020608 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd4, complete sequence 11707-11742 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016715 Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence 75576-75611 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 CP016714 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence 11191-11226 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016694 Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence 11191-11226 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016708 Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence 47875-47910 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016700 Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence 51745-51780 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016701 Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence 54536-54571 7 0.806
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 CP029293 Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6 107390-107425 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016716 Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063B, complete sequence 31857-31892 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 CP029292 Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5 24816-24851 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP020611 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd7, complete sequence 22354-22389 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP034581 Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06F, complete sequence 21127-21162 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 CP034573 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence 45786-45821 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_015863 Lactococcus lactis subsp. lactis plasmid pIL5, complete sequence 15462-15497 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_017497 Lactococcus lactis subsp. cremoris A76 plasmid pQA504, complete sequence 1911-1946 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NZ_CP016696 Lactococcus lactis subsp. lactis strain 229 plasmid p229C, complete sequence 22254-22289 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_017487 Lactococcus lactis subsp. lactis CV56 plasmid pCV56B, complete sequence 23440-23475 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 CP034582 Lactococcus lactis subsp. lactis strain C10 plasmid pC10B, complete sequence 39072-39107 8 0.778
NC_014215_2 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT 443618-443653 36 NC_004922 Lactococcus lactis lactis BGMN1-5 plasmid pMN5, complete sequence 4134-4169 8 0.778
NC_014215_2 2.6|441668|35|NC_014215|PILER-CR,CRISPRCasFinder,CRT 441668-441702 35 NC_021909 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence 128785-128819 11 0.686

1. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

2. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

3. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

4. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

5. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

6. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

7. spacer 2.9|441883|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 0, identity: 1.0

cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	CRISPR spacer
cgcgtgcgcggcccgcttgcgaggaaatttgtcggg	Protospacer
************************************

8. spacer 2.4|441520|40|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 1, identity: 0.975

ggtccggctcctgcgccgctgggaagccctcgccgcccac	CRISPR spacer
ggtccggctcctgcggcgctgggaagccctcgccgcccac	Protospacer
*************** ************************

9. spacer 2.4|441520|40|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 1, identity: 0.975

ggtccggctcctgcgccgctgggaagccctcgccgcccac	CRISPR spacer
ggtccggctcctgcggcgctgggaagccctcgccgcccac	Protospacer
*************** ************************

10. spacer 2.7|441739|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 1, identity: 0.973

ctgtcgagcaaattcagctcacacaggaggaagccca	CRISPR spacer
ctgtcgagcaaattcagctcacacaggaagaagccca	Protospacer
****************************.********

11. spacer 2.7|441739|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 1, identity: 0.973

ctgtcgagcaaattcagctcacacaggaggaagccca	CRISPR spacer
ctgtcgagcaaattcagctcacacaggaagaagccca	Protospacer
****************************.********

12. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_019351 (Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence) position: , mismatch: 1, identity: 0.972

aagcggagcgacaagagcgaacagggagattttttg	CRISPR spacer
aagcgtagcgacaagagcgaacagggagattttttg	Protospacer
***** ******************************

13. spacer 5.3|2215994|21|NC_014215|CRISPRCasFinder matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgtcgccttgcgggtggtgcg	CRISPR spacer
cgtcaccttgcgggtggtgcg	Protospacer
****.****************

14. spacer 5.3|2215994|21|NC_014215|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgtcgccttgcgggtggtgcg	CRISPR spacer
cgtcaccttgcgggtggtgcg	Protospacer
****.****************

15. spacer 5.3|2215994|21|NC_014215|CRISPRCasFinder matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cgtcgccttgcgggtggtgcg	CRISPR spacer
cgtcaccttgcgggtggtgcg	Protospacer
****.****************

16. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgcaggcttcttggccgccggttt	Protospacer
*** *****************.**

17. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgcgggcttcttggcggccggctt	Protospacer
*** *********** ********

18. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgcgggcttcttggcggccggctt	Protospacer
*** *********** ********

19. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgccggcttcttttccgccggctt	Protospacer
************  **********

20. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 2, identity: 0.917

tgccggcttcttggccgccggctt	CRISPR spacer
tgccggcttcttttccgccggctt	Protospacer
************  **********

21. spacer 2.23|442892|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 3, identity: 0.917

cgggccgccgtcgtccttgaacagcccgaccttcgc	CRISPR spacer
cgggccgccgtcatccttgaacagcccgaccttgac	Protospacer
************.******************** .*

22. spacer 2.27|443183|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to AF428260 (Propionibacterium phage phiB5, complete genome) position: , mismatch: 3, identity: 0.919

ctcagcggcagatgctggtcagtgaggtcctcacgag	CRISPR spacer
ctcagcggcagatgctggtcagtgaggtcctgagcag	Protospacer
******************************* *  **

23. spacer 2.27|443183|37|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_003460 (Propionibacterium phage B5, complete genome) position: , mismatch: 3, identity: 0.919

ctcagcggcagatgctggtcagtgaggtcctcacgag	CRISPR spacer
ctcagcggcagatgctggtcagtgaggtcctgagcag	Protospacer
******************************* *  **

24. spacer 5.1|2215898|24|NC_014215|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttggccgtggacgccgt	CRISPR spacer
tgccggcttcgccgtcgacgccga	Protospacer
********* ***** ******* 

25. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
cgccggcttatttgccgccggctt	Protospacer
.******** ** ***********

26. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
cgccggcttctcggtcgccggctt	Protospacer
.**********.**.*********

27. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
ggccggcttcttggtcgccgcctt	Protospacer
 *************.***** ***

28. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
cgccggcttcttgaccgctggctt	Protospacer
.************.****.*****

29. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
agccggcttcttggctgcgggctt	Protospacer
 **************.** *****

30. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 3, identity: 0.875

tgccggcttcttggccgccggctt	CRISPR spacer
ggccggcttcttggccgcggtctt	Protospacer
 ***************** * ***

31. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

tgccggcttcttggccgccggctt	CRISPR spacer
ggccggcttcttggccgccgaatc	Protospacer
 *******************. *.

32. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

tgccggcttcttggccgccggctt	CRISPR spacer
aaccggcttcttggccggcggctc	Protospacer
 .*************** *****.

33. spacer 5.2|2215946|24|NC_014215|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.833

tgccggcttcttggccgccggctt	CRISPR spacer
cagcggcttcttggcagccggctt	Protospacer
.. ************ ********

34. spacer 2.10|441955|35|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 5, identity: 0.857

cggccccgtctggtcggacagccttgaagagccgg	CRISPR spacer
cgaagccgtcaggacggacagccttgaagagccgg	Protospacer
**.  ***** ** *********************

35. spacer 2.10|441955|35|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 5, identity: 0.857

cggccccgtctggtcggacagccttgaagagccgg	CRISPR spacer
cgaagccgtcaggacggacagccttgaagagccgg	Protospacer
**.  ***** ** *********************

36. spacer 2.23|442892|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 5, identity: 0.861

cgggccgccgtcgtccttgaacagcccgaccttcgc	CRISPR spacer
cgggccgccgtcatccttgaacagcccaaccttttt	Protospacer
************.**************.*****. .

37. spacer 2.23|442892|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 5, identity: 0.861

cgggccgccgtcgtccttgaacagcccgaccttcgc	CRISPR spacer
cgggccgccgtcatccttgaacagcccaaccttttt	Protospacer
************.**************.*****. .

38. spacer 2.26|443109|38|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to AF428260 (Propionibacterium phage phiB5, complete genome) position: , mismatch: 5, identity: 0.868

gtgggtgttctggtggtcgtgggtgtcgggttcggggc	CRISPR spacer
gtgggtgctctggtggtcgtgggtgtcggggtcgcctc	Protospacer
*******.********************** ***   *

39. spacer 2.26|443109|38|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_003460 (Propionibacterium phage B5, complete genome) position: , mismatch: 5, identity: 0.868

gtgggtgttctggtggtcgtgggtgtcgggttcggggc	CRISPR spacer
gtgggtgctctggtggtcgtgggtgtcggggtcgcctc	Protospacer
*******.********************** ***   *

40. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to CP034574 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

41. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016747 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1A, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

42. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016698 (Lactococcus lactis subsp. lactis strain 229 plasmid p229E, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

43. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_015862 (Lactococcus lactis subsp. lactis plasmid pIL4, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

44. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051519 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

45. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016687 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

46. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_019430 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

47. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020608 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd4, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

48. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

49. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to CP016714 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

50. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016694 (Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

51. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016708 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

52. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016700 (Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

53. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016701 (Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence) position: , mismatch: 7, identity: 0.806

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaacagggag-----ttaaaaat	Protospacer
******************.*********     **.     

54. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg-----	CRISPR spacer
aagcggagcgacaagagcaaaaagggag-----ttaaaaat	Protospacer
******************.** ******     **.     

55. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016716 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063B, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

56. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to CP029292 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

57. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020611 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd7, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

58. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034581 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06F, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

59. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to CP034573 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

60. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_015863 (Lactococcus lactis subsp. lactis plasmid pIL5, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

61. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_017497 (Lactococcus lactis subsp. cremoris A76 plasmid pQA504, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacaggg-----agattttttg	CRISPR spacer
aagcggagcgacatgagcgaacgggggtacaaaatt-----	Protospacer
************* ********.***     *.***     

62. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016696 (Lactococcus lactis subsp. lactis strain 229 plasmid p229C, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

63. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_017487 (Lactococcus lactis subsp. lactis CV56 plasmid pCV56B, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

64. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to CP034582 (Lactococcus lactis subsp. lactis strain C10 plasmid pC10B, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg---	CRISPR spacer
aagcggagcgacaaaagcaaacagggga---tcttgaac	Protospacer
**************.***.*******..   *.***   

65. spacer 2.33|443618|36|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_004922 (Lactococcus lactis lactis BGMN1-5 plasmid pMN5, complete sequence) position: , mismatch: 8, identity: 0.778

aagcggagcgacaagagcgaacagggagattttttg	CRISPR spacer
aagcggagcgacaagagcaaaaaggggttttaatcg	Protospacer
******************.** ****.  **  *.*

66. spacer 2.6|441668|35|NC_014215|PILER-CR,CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 11, identity: 0.686

tcaagaccgaaccggatcacatgcgcactgtcgcc	CRISPR spacer
gagaagccgaacaggatcacttgcgcactgttcga	Protospacer
  .*..****** ******* **********.   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 94209 : 128652 30 Mycobacterium_phage(25.0%) holin,transposase NA
DBSCAN-SWA_2 277111 : 350732 53 Tupanvirus(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_3 354263 : 428275 54 Mycobacterium_phage(22.22%) transposase NA
DBSCAN-SWA_4 2239639 : 2288796 42 Mycobacterium_phage(40.0%) tRNA,holin,transposase,integrase attL 2258379:2258396|attR 2290962:2290979
DBSCAN-SWA_5 2372345 : 2490090 104 Mycobacterium_phage(22.22%) transposase,integrase attL 2428310:2428369|attR 2452883:2454318
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage