CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014544	Legionella longbeachae NSW150 plasmid pLLO, complete sequence	0 crisprs	DEDDh	0	0	0	0
NC_013861	Legionella longbeachae NSW150, complete genome	2 crisprs	DEDDh,cas3,RT,WYL,DinG,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013861_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013861_1

1163218-1163309

Orphan

Consensus_repeat	Method
TATTAATGCTAAAAAAAAGACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013861_1

>merge|NC_013861|1|1163218-1163309|CRISPRCasFinder
TATTAATGCTAAAAAAAAGACTGAAATCCATAACGTATTCGGAAATAATGCCAGTAACCAATGTAAGGTTATTAATGCTAAAAAAAAGACTG

>NC_013861|1|1|1163218-1163309|CRISPRCasFinder
TATTAATGCTAAAAAAAAGACTG	AAATCCATAACGTATTCGGAAATAATGCCAGTAACCAATGTAAGGT
TATTAATGCTAAAAAAAAGACTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013861.1\|WP_003632346.1\|1175748_1179150_+\|TM0106-family-RecB-like-putative-nuclease	unknown	unknown	gnl\|CDD\|274603
NC_013861.1\|WP_080619801.1\|1162661_1162895_+\|Tn3-family-transposase	unknown	unknown	gnl\|CDD\|376561
NC_013861.1\|WP_003632349.1\|1175069_1175306_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_105166095.1\|1160019_1160592_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213218
NC_013861.1\|WP_012978952.1\|1171027_1172635_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NC_013861.1\|WP_012978949.1\|1158801_1159476_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_013861.1\|WP_003632364.1\|1157667_1158690_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NC_013861.1\|WP_143828235.1\|1167184_1167868_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003632365.1\|1156969_1157248_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375646
NC_013861.1\|WP_003632353.1\|1166571_1167003_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003632366.1\|1155807_1156941_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_013861.1\|WP_003632367.1\|1154889_1155807_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_013861.1\|WP_003632359.1\|1160980_1161205_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003632345.1\|1179163_1179880_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NC_013861.1\|WP_003632362.1\|1159364_1159973_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NC_013861.1\|WP_143828236.1\|1169916_1170486_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_143828237.1\|1170503_1170716_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003632351.1\|1172767_1174783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238882
NC_013861.1\|WP_003632354.1\|1165096_1166263_-\|GTPase	unknown	unknown	gnl\|CDD\|238090
NC_013861.1\|WP_125461277.1\|1162117_1162336_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013861.1\|WP_003632346.1\|1175748_1179150_+\|TM0106-family-RecB-like-putative-nuclease	gnl\|CDD\|274603	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.	2.33328e-63
NC_013861.1\|WP_080619801.1\|1162661_1162895_+\|Tn3-family-transposase	gnl\|CDD\|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	2.89105e-17
NC_013861.1\|WP_105166095.1\|1160019_1160592_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213218	cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C. MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	4.25981e-89
NC_013861.1\|WP_012978949.1\|1158801_1159476_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.39273e-21
NC_013861.1\|WP_003632364.1\|1157667_1158690_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	6.89234e-12
NC_013861.1\|WP_003632365.1\|1156969_1157248_-\|hypothetical-protein	gnl\|CDD\|375646	pfam18219, SidC_N, SidC N-terminal domain. This is the N-terminal domain of SidC present in Legionella pneumophilia. SidC appears to be involved in modulating mammalian trafficking by promoting the communication between ER-derived vesicles and the Legionella containing vacuole. The N-terminal domain (SidC-N) has a novel fold with 4 potential subdomains. SidC-N does not show structural similarity to any known protein domain in the protein data bank.	1.39008e-18
NC_013861.1\|WP_003632366.1\|1155807_1156941_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.71161e-32
NC_013861.1\|WP_003632367.1\|1154889_1155807_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.31447e-89
NC_013861.1\|WP_003632345.1\|1179163_1179880_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.13016e-14
NC_013861.1\|WP_003632362.1\|1159364_1159973_-\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	7.53336e-20
NC_013861.1\|WP_012978952.1\|1171027_1172635_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.29595e-144
NC_013861.1\|WP_003632351.1\|1172767_1174783_+\|hypothetical-protein	gnl\|CDD\|238882	cd01846, fatty_acyltransferase_like, Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.	1.79943e-39
NC_013861.1\|WP_003632354.1\|1165096_1166263_-\|GTPase	gnl\|CDD\|238090	cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.	8.98063e-13

>NC_013861.1|WP_080619801.1|1162661_1162895_+|Tn3-family-transposase
MGLATNAIVLWNTVYMQAAVDYLRAQGEVINEEDEKRLSPLGLKYVNLLGYFSFMLPKVVAEGQLRPLNVAEKLGLA
>NC_013861.1|WP_125461277.1|1162117_1162336_-|hypothetical-protein
MRRFSEEISTSLWQCIIDDASDELRVSKPISGVTYKVPSDRLCPQVVSCSSYISNQFTELQRCISINMTAIN
>NC_013861.1|WP_003632359.1|1160980_1161205_-|hypothetical-protein
MEELAGCALLVFPALEILAANGSLIHNDDTVLRIIDTIRHNRLNPDKKRTGIYTTVLLAQNSAHKIALFYNSHC
>NC_013861.1|WP_105166095.1|1160019_1160592_-|ATP-binding-cassette-domain-containing-protein
MSKGNVEIDDINLTCFTKDSLRSQIAIVPQHLNLFHRSIFENIAYGCRHVSKEEVIAAAKKAKCHDFITSLEHQYETIIGEQGVKLSGGQRQRIAIARAILKNAPILLFDEATSALDSATEQAIQEALETLLKDKTALIIAHRLSTLKAMDKILVLENGPIVESGSHNELLAVKEAYYNYWTQQSSEFIR
>NC_013861.1|WP_003632362.1|1159364_1159973_-|dihydrofolate-reductase
MLAKCSVFIATSLDGFIARNNGSIDWLMKANTLVPPGEDGGYKEFISTVDGLIMGRHSFEMVLSFESWPYGDLPIIVLSSQPIEIPDRLKTNVSASSETPTDLVKRLTKRGFKRLYIDGGITIQNFIADNLISDLTITIAPVLLGSGRSLFGRLVHDIELEHLETKCIGGGFTQLKYRMHPIADTKAIKKKIRIRSTSFMMK
>NC_013861.1|WP_012978949.1|1158801_1159476_-|methyltransferase-domain-containing-protein
MYWRWFYSTEIPHASYCRYQSYKEKNKNKVYLLYDEIIDWFDSHRNKELDLEKFYLDFLQNHIPSEGSVLDVGCGTGEPIAQFLIKRGYKVTGVDASKKMIDLCNKRFPNGKWLLSDMRTLNLQDKFHAVIAWHSLFHLPHDDQRMVLKSLSSLVEQNGLLLFTSGPEYGEVWGDNGGHDLYHASLSAEEYTQILLDCHFKVLIHKVRDPECGEATVWVAQKKG
>NC_013861.1|WP_003632364.1|1157667_1158690_+|aminoglycoside-phosphotransferase-family-protein
MLIKPDLKDEEIVRCLRNVYGLDVDKIFFLPLGADLNTAVYRVTTSTERDYFLKLRSGEFNEASVLVPKYLADLGFRQVIPPLTTTDGQFWTSLASFKVVIYPYVKGRNGVEVNLSDKQWIEFGATMKRFHSADIPQTITTGVQTETFSSKWHQTVRVFLGRIDNEVFEEPIATKMALFLKSQKGEILELIRCAEHLASKLQKQPHENILCHADIHGWNLFIDEGGALYVVDWDTLLFAPKERDLMFIGSGLGDSGRTPFEDEALFYNGYGPTNINDDAIAYYRCQRVIEDIGVYCEQIFLSDEGGEDRLQSFKYLQSNFLPNGTIERAFQSCKSRENQK
>NC_013861.1|WP_003632365.1|1156969_1157248_-|hypothetical-protein
MYISSNEPTAPRYIHINPQTNKVHLLVPISYGDEINHADGCDKTTAALQDLFNREALDELDTYQHTLQLDIQLLDEGSEQRIAKEERLIQSI
>NC_013861.1|WP_003632366.1|1155807_1156941_+|ABC-transporter-permease
MARFSLFRLHGLVVKEFVQLKRDRFTMALIIGLPIIQLLLFGLAINVNPKHLPTALMNYDQGPFARTLIHGLENTNYFKFVYFPHTEKEAQYLLSTNQVKFILTIPSDFSRKLIRKEHPAALLEADGTDPVSVVYALSASNNLMSTVFNNDLIGSIHEPIQHQTPAELRTHINYNASAITQYNIVPGLLGLVLSMTFVMVSAMALARERERGNWECLLATSLKPLEVMIGKSLPLIVIGYLQVFIILIIAVSFFRIPFLGSLWLFLLIILPFILANLFVGILFSTFAKNQLEASQLSTLFMMPSLLLSGFAFPFKGMPYWAQFIGNLLPLTHFNNIVRGMMLKGIGFHEVMIDLGPILLFMCVSLFLALRFYKQTLD
>NC_013861.1|WP_003632367.1|1154889_1155807_+|ABC-transporter-ATP-binding-protein
MNEQWIIDVYGLSKQFNGKMAVNELSLQIKQGEIFGFLGSNGSGKTTTIRMLCGLIQPDKGRGTCLGYDVISQAALIKSSLGYVPQTFSLYQDLTVEENLKFIARANNEKNYLNRINEIIGDLNLHPYRNVLAGNLSGGWKQQVSLAAALIHQPRLLLLDEPTSGVDPKTRQAFWSYISYLTTTGITVLVSTHYMDEAEKCNRLAYIVNGELMIQGTLDQMMQQVKLFAFLVEGSNLAHLANELQNKSQVEQVVHWGNSLRVCDSNAFLLKELIDAYPNYQWNAVTANLEEVFIHLVHSKISKGR
>NC_013861.1|WP_003632354.1|1165096_1166263_-|GTPase
MAGPYNTHTIVNVFRSIVQLISQYQELLHTQGIFRIPGSKEEIERLLEQLIGDHFNVEVLSNYIMNENTVNNEHLHNVLGMISAMLKESQILASTDDLLVSFSKKLKSLLESHQEEDIKNTIAAQLLDNFISDLLLSKRIDHQRAGEILYHYFHLMHQVGKYQEINFMTYNNLAIIIAPGLTNELSLYTGNNLLDLTSYVSQLTPVLENYIAETKWDCDFKKYHADKLDHLENTRYSLREQLEHMKEASRKSVTTPMKSYMLQASMIKAQIDAIKEVQQDHSLKKKAKKKLGKQLDPLQEEQSDLLSKISELAPKIKAMNSGQQQIQKEIDMLTHSGNRVTSCENPSNNSNLVQFSIFEPSSSNACTVLPTIPEEKEEFEDQEEYIHQ
>NC_013861.1|WP_003632353.1|1166571_1167003_+|hypothetical-protein
MDTNIELNAMNPSESRSNEEIGTTDEVVNATSEDVYKYQKISLLIPKLITTIEQIEMLDQNTEMNIELKKSRKRLASIVIDNTSPNAEDIKEFTDSLSSALYGLSTGMSLIDMRGMIPEKKNRAVDLFADISLIQEDIVKLAS
>NC_013861.1|WP_143828235.1|1167184_1167868_-|hypothetical-protein
MPAWTSAFLVLVYAVSAPLLTAGQPVFWIQLPAWTSAFLVLVYAVSAPLLTAGQPVFWSQLPAWTSAFLVLVYAVSAPLLTAGQPVFWIQLPAWTSAFLVLVYAVSAPLLTAGQPVFWIQLPAWTSAFLVLVYAVSAPLLTAGQPVFWIQLPAWTSAFLVLVYAVSAPLLTAGQPVSLANSAVAPIALRGVVITPINAVPISLPNFLAASATLFQSSFLVVGMLYLP
>NC_013861.1|WP_143828236.1|1169916_1170486_+|hypothetical-protein
MHWSRQATGSKTQAGQQSKAALKRHTQAPKMRWSRQATGSKTRAGQQSKAALKRHTQAPKMRWSRQATGSKTRAGQQSKAALKPHTQAPKMGWSRQVTGSKTQAGQQSKAALKRHTQAPKMRWSRQVTGSKTRAGLQLKAALKRHTQAPKMRWSRQATGSKTQAGLMSKVQLKMHLRLHVIFAVVKFLN
>NC_013861.1|WP_143828237.1|1170503_1170716_+|hypothetical-protein
MHDKAVEKIDKYLDDYLADDGGGLLLSSPKSSSSVTNILSDDAYTSPGTSRDNVSEKDNDKGNTIERRLG
>NC_013861.1|WP_012978952.1|1171027_1172635_+|murein-biosynthesis-integral-membrane-protein-MurJ
MSNDKTLNVKATGTVALAIMVSRVLGLIREVLFNALFGSAAMGIFLIAFRAPNLLRDLFAEGALSVSFITVFSKKIETEGDQSAWQLASKMLTLTSIFMSVLCLLGIIFAKYIIFILAPGFSANDIETTVFLTQLMFPFILLVSLAAIVMGMLNSKNVFGVPALASSFFNMGSILGGALCGWLIDPSFGERALIGLSVGTVIGGLLQLGVQFPSLRKVGFRFRPNFHWYDSGIRKTLILTIPAVIAASAVQVNVLINSGFASYLGKEAVTWLNSAFRLMQFPLGMLGVAIATITLPVVSRLAATSNHSQLGPTLARAIRLAIFLTMPAAVGLWFFANPIISFIYGHGKFHASDSLQTAYALQFYALGLVAYSCIKVLSPAFYAIDKKWSPMIVSFATIILNIILNYYLIFKLNMGHCGLALSTTVSATVNFLILYILMSRLHNMQNRYLCSTTLRCILAAATLGFVCQFIFAYGTDFLYHPSFWVRGVSLVISISFAASVYFAICVLLRVDEAKSIFIIIYQRFGSPVDLKSKQV
>NC_013861.1|WP_003632351.1|1172767_1174783_+|hypothetical-protein
MAISKRESKKNLTHFVVFGDSLSDGKNMGEKFSFLGSWVKSLWLKALGLDKSPKERFTNGYTWADSFRATLISKFLNDDKIKNDSDHRFGKYNLNNADISDEVLSQSPFIRKRYTLDDVIAESRKVKRKQRVEDREEGHLFTAKQEGTPEDIINPGHIVDSTDIADAAIAHRYKTNAQRATLRNKMRLLNASTLQESSDDISDQIITDPRYSKYVQEYYSLDDGRTAQYNGQNFFANYSQGGATSYDYSWKGLFLSLFAPFTSIKLFFTRLIVSNLSKQVDQFLVDLEKQEDYEDKERTLITVFSGANDLITVNSEPTKEAANLAVQSNIDNIEKLLQQGFKNIMLCNLPDLSLTPRFQGTSREGQAHEITEYFNTQLEEKYKKLKEKYPSCSIDFFNINSIFTKIYTDVRDNPQSEYAQYFDSKKLKEAYKDSTDYTMTPERTSPGSKHMFWDDVHPTATMHALLMSEFYKNIDALGKYKITAPAEQSPEQLCKKFRQKYHEKLENSWFGFLSSNKELPINYKEPAKALNSILRFALDKNNKKADYIRRAMIDLGWWVNNEPNMCIPALADAMWVLDPTLARKLEAKLDPHLEQPHSNSPRMMMGALNAGVSRHKTVPPELALSPEVEKKLKMMQKLPNKNKESTLSQAKGNTTFETPKLSSKDNVLTFA
>NC_013861.1|WP_003632349.1|1175069_1175306_-|hypothetical-protein
MAAIATFAAWIAGLHIQSIGKVSDFQAHSAKSAFALFIVFLGKHVLKKTLLLTQENFQNLLMMLYQCAIQAQHAAPQM
>NC_013861.1|WP_003632346.1|1175748_1179150_+|TM0106-family-RecB-like-putative-nuclease
MYLESNQIVFSPSDLAQFMDSPFASWMDHLAVTNPEYLPSPDENNELLSVLHDMGNQHESEVLASFEAKGLTIANLRNRTDSYQATIDAMKNGVDVIYQAHLELLPFKGYADFLIKVQGKSIFGDYCYEVWDTKLAKYVKPNFLVQLSCYAEMLDVMQQARADHITIILGNKEQKRFRLNDYFYFYQNLKHQFLLLHQQFEPFKSPDPALSKSWGRWSTHAKNLLLKADHLIQVATITSGQIKKLNQAGIYTMTALANSDYKTVKGIKYELFEQLKAQAKIQKDSIGKDVPAYQLINHENGRKQGLALLPPKSKNDIFFDIEGFPLEDGGLEYLWGVTYFDENDQRRYMDFWAHDKDQEKESFRSFVEWVYKRWQQDLSMHIYHYASYEVTACRKLMSRYGVCEYEIDQLLRNGVFVDLYKIVKSALLIGEPRYSIKNVEHLYRAKRDTEVGSGGDSVVVYERWRENPDGDTWQTSKILNDIRSYNIDDCNSTQELVRWLREKQEACGISFLGQTELIEPEIKEEVNERIKLRDRLLKRALQLHSEGHELLSKLHSVMAWSIEFHRREAKPVFWRLFDRLGLSEEELFEDMDCLAYCQRTEKPPYKSTPKARNLVYEYSFDPDQEFKANAKEYYLLGNETPDGKNIKAICHNEGSDLDHGIIALQIKNEPDSLITLIPNEYIDPDPIPQAITKQAESFANGMLAQTAIVDFLGKSIPRIKDHTSGQAIAPSHDPERRLNEIIKAVVNLDNSYLTIQGPPGAGKTYTGKHLIAELIKKGKKVGVSSNSHKAINNLLINTAKYCQKMGIAGHFSCKSKTDSVIDDLNINVLENKDISSFLQPGCVVGTTAWGFSRDDLEHAFDYLFIDEAGQVSVANLIAMSRSTSNIILMGDQMQLGQPSQGSHPDDSGLSILDYLLHSTPTIPDSMGIFLGTTYRMHSAVNQFISEAIYEGKLETAPENDEQLITVPVGYNGILNKEAGIIPVPVIHEGNTQGSDEEVAQIFSLAHELLGRTFNDKRGRQRTIDWDDILFVAPYNFQVNKFKAALGDKARVGSVDKFQGQEAPIVFLSMCASSANESPRGVNFLFDKNRINVAISRAQCMAVIVYSPALLDSVPNNIEQIAMMNMFCQLVKNR
>NC_013861.1|WP_003632345.1|1179163_1179880_+|alpha/beta-hydrolase
MKKGQTFILIHGAWHASWCWKPIAKELIAKGHKVLMPDLPGHGQKKQISSSIGFTDYVNSVIQLVQHQQEQVILVGHSMAGLIISAVAERIPEAIGELVFVAGYVPHDQKSLFSLALESESNNLTPFLIIDELLQEIRLQISADLINIFFNCCKRADAQKAMSRLQAQPIRPFNEPVQIGEKYTRTPKRSLVCRYDKALLLSDQLRMSREVTDNIIYLDADHAVYYSGAKLIVDELLK

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Crispr_ID: NC_013861_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013861_2

2824041-2824139

Orphan

Consensus_repeat	Method
GTATTTGAGCCTTTTGTAAATAAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013861_2

>merge|NC_013861|2|2824041-2824139|CRISPRCasFinder
GTATTTGAGCCTTTTGTAAATAAAATTGTGAAAAACAAAGCAACTTTGATATTTAAGGGTGAAGACAAAAAAGTATTTGACCCTTTTGTAAATAAAATT

>NC_013861|2|2|2824041-2824139|CRISPRCasFinder
GTATTTGAGCCTTTTGTAAATAAAATT	GTGAAAAACAAAGCAACTTTGATATTTAAGGGTGAAGACAAAAAA
GTATTTGACCCTTTTGTAAATAAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013861.1\|WP_003635975.1\|2811505_2812909_+\|YdgA-family-protein	unknown	unknown	gnl\|CDD\|377603
NC_013861.1\|WP_003635939.1\|2831392_2832421_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NC_013861.1\|WP_003635969.1\|2815578_2816964_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_012979304.1\|2825327_2826314_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635937.1\|2832401_2833334_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635963.1\|2819167_2819482_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635934.1\|2834212_2834734_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635935.1\|2833312_2834197_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|379231
NC_013861.1\|WP_003635967.1\|2817324_2818995_+\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NC_013861.1\|WP_003635946.1\|2827973_2829209_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_013861.1\|WP_003635943.1\|2829410_2829878_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_013861.1\|WP_003635954.1\|2822845_2823082_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635941.1\|2829970_2831341_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_013861.1\|WP_003635961.1\|2819574_2820735_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|236039
NC_013861.1\|WP_158304182.1\|2827011_2827185_-\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635957.1\|2821718_2822663_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375831
NC_013861.1\|WP_003635933.1\|2834926_2836249_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NC_013861.1\|WP_003635959.1\|2820838_2821591_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635973.1\|2812999_2814040_+\|hypothetical-protein	unknown	unknown	unknown
NC_013861.1\|WP_003635971.1\|2814158_2815355_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013861.1\|WP_003635975.1\|2811505_2812909_+\|YdgA-family-protein	gnl\|CDD\|377603	pfam06097, DUF945, Bacterial protein of unknown function (DUF945). This family consists of several hypothetical bacterial proteins of unknown function.	1.22278e-81
NC_013861.1\|WP_003635961.1\|2819574_2820735_+\|acetylornithine-deacetylase	gnl\|CDD\|236039	PRK07522, PRK07522, acetylornithine deacetylase; Provisional.	0
NC_013861.1\|WP_003635939.1\|2831392_2832421_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	3.63524e-47
NC_013861.1\|WP_003635943.1\|2829410_2829878_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.85138e-45
NC_013861.1\|WP_003635933.1\|2834926_2836249_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	6.77267e-163
NC_013861.1\|WP_003635957.1\|2821718_2822663_+\|hypothetical-protein	gnl\|CDD\|375831	pfam18405, Serine_protease, Gammaproteobacterial serine protease. This family includes serine proteases such as L. pneumophila effector Lpg1137. Lpg1137, is a serine protease that targets the mitochondria-associated ER membrane (MAM) and degrades STX17 (syntaxin 17), a SNARE implicated in macroautophagy/autophagy as well as mitochondria dynamics and membrane trafficking in fed cells. Lpg1137 has a sequence (-Gly-Leu-Ser68-Gly-Gly-) that matches the consensus sequence for the active site of serine proteases (Gly-X-Ser-X-Gly/Ala, where X is any residue). It exhibits proteolytic activity toward STX17 in vitro, whereas an active site mutant in which Ser68 is replaced by Ala does not. Expressed Lpg1137 localizes to the MAM and mitochondria, in addition to the cytosol, and binds to STX17.	5.12006e-164
NC_013861.1\|WP_003635935.1\|2833312_2834197_+\|FUSC-family-protein	gnl\|CDD\|379231	pfam13515, FUSC_2, Fusaric acid resistance protein-like.	7.48193e-16
NC_013861.1\|WP_003635941.1\|2829970_2831341_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.49094e-43
NC_013861.1\|WP_003635967.1\|2817324_2818995_+\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	4.44117e-80
NC_013861.1\|WP_003635946.1\|2827973_2829209_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.39758e-20

>NC_013861.1|WP_003635954.1|2822845_2823082_+|hypothetical-protein
MISFFLKSGCNVIQTATKRSLIDATRSMSTAGIIFGGYYIYNKAASLFTHHHFFNNNSNKIDVKEISEYNNKSSISGS
>NC_013861.1|WP_003635957.1|2821718_2822663_+|hypothetical-protein
MQAKTENNPGNQGLPFSPTPYFLANLGVKTAAISFSVSTLTQPFQAMLTRLQLNAPSGFNGGLFRSMYRGFVPYAIAGQKRGAVSVTAKQANKEVIEEEEIEIPGRQRWLGTFVFSQADLLISNALGGKSKLENAGIITKTNFKWSFANYWKLTGVNWGSRSFAGFVNFSALGFVGDYISSFYKFDNDFYNKLAGGATAGVIATIFTTIPNSYADRKVLATKVENGRLLTVSPFTMFSQAKSHVNSVGMKQALSHFVKVNFLKEVVVRSPMSALTFGIIFGLDDLMGPEPLKRVWPKFKEIDSEKTENNPAKKM
>NC_013861.1|WP_003635959.1|2820838_2821591_+|hypothetical-protein
MKILYIPFHEENDLCIAAIMWKRTLSEENILIIQHGQPINYNALKNAAGTITLYVLAHGIDSLSQPFHLASHSIITSKTSQLDIEKIADRFNSDFVYLHHKINHIKLFFCNNKGNQELIAKRFNDNLILFNSPIDYYAGNITAPWQNKIKYSFFHGIWYKTSNVRKTLYQKIEPMDSDIKLSVKERSMREFLANAKQKRIDAVFQRQCKARQERIIKNRQKYTDKLRLDLKDTVEEATDELSNPNPQYLG
>NC_013861.1|WP_003635961.1|2819574_2820735_+|acetylornithine-deacetylase
MNTIDWLTKLIAFDTTSRNSNLSLVEFLANALNDYQIKPIIIHDRKEPKANLLATIPAYNARFDGGIILSGHTDVVPVDGQDWDSDPFQATIKDDRIYGRGACDMKGFIAVIMSLIPQLKALKLEFPIHLAFSYDEEIGCRGAPHIIDKINALNYRPKACIVGEPTSMQPVTGHKGIHSYRCQIHGVAAHSSLTSQGCNAIEHAASLIRFLRDLANQFKSEGHKDESYDIPYTTISTNLIQGGNAYNTIPNLCEFVFEIRNLALDDSDRINKKIMNFIENELLPSMHQEQPSAQIILENIANAPGLEIQPSEAIVQGAQSICQSQKQSKVAYATEAGLFQNAHIPTIVCGPGSIEQAHRANEFIDLEQLYRCERFVIEMLKLPFLK
>NC_013861.1|WP_003635963.1|2819167_2819482_-|hypothetical-protein
MKKLLLFAISLFMIFSMASYAGKVVIIGNPVILEKQGSVYYLSNRYTVTTSYYYVILDGQRQVCYMEKQPALSALNTKTIDVNYRGSSMTWICYPYDTNYFETP
>NC_013861.1|WP_003635967.1|2817324_2818995_+|response-regulator
MDSKETNELQKIIDEKNNEIHQLTLSLEEERSKFKNELQAIHEYYDNIIALMPGHVYWLDKNNVFLGCNDLQAKNAQLKSRKDIVGKTNFDMPWRDQAEELNKVNQLVMETGIPHTAEEYAVMANGMGIYYSQKVPLRNQKNEVIGVLGISLDITERKKMEVALRRAKENAEVANQAKNEFIANMSHDIHTPLSGIVGMSKLLEEKEQNPERKQYARWIHESGEQLLELLNGVMDIVATDSLREDDVHEELFELRKNIQDIAHLVQPTLQMKKIKLNIEIDEAVPNTIITDATKIHRVLLNLVGNAIKFTDNGSVTIKVEVLSLENNYTQLRFSVIDTGIGIPAELQSKIFDRFFRAIPSYKSTHSGYGVGLHIAQKYLSLLGGEINLESEIGKGSTFYFTLTLKIGYNDKPTSNPITGSDSQKAASPLSPLVLLVEDNILSLHMIENVVEQAGYEFYSAIDGEHALELIETNDFDLIITDTDLSNLSGKNLVLCIRELENQLQKKPIPIIGLTTNTSIEAEKKYLRSGFNKILSKPIHLKVLQSVVNDLFSPKSK
>NC_013861.1|WP_003635969.1|2815578_2816964_-|hypothetical-protein
MPKVRGPRDGKLITASFDGKEKSLFPSLKTTKDLVLLSIRGNEYCTGEYLGAIVQQAVATHQTPIDHSGAKGKATFLIADEIYWHNIKQMISSESEVEILKQEAIKIGADYFLTNLGAFLTPLDMTIEQFNEKYPEKSVDEIITIINQLADEQGKNFEIVRWKTWVAQNDSQEKINKMMGFYDSVEGLKESVIRTQNNFVKRHGKDGDEELWKLRSHDYLIEESPAVMWLAASLGYNFIVYPGEILPPFEATKEFFVVPNHVPRISQGKNIIEECEHNEYSIHTDNPNRLVNWLEVNFKRSHPPKQAGVSVENEVTSVGKSFASVEQPLVSVEKKMSFFSSSPRKKTKVRVLDKQVEDNVTMDLPLSNPNALMLGSALEGIGKALISKHSNGKIQSKSSSILSEAFAGITHEVLSSDLSPSDQVNFLVSILNGVMKGNGQSCTSESDTSILLENTKASFCK
>NC_013861.1|WP_003635971.1|2814158_2815355_+|hypothetical-protein
MISMTAYWQQFKECIESLQMSTEDIEYARQMSTAKNLIETGLIIEKLGLLEIQQVSEQLHEKAKLFQNEICYTTDNHEHRFYLPKITNTQSFIFAIIYYQHLLNYQNVSYQGTINWFRPKVIDGINQKKITTAIQAQALLQEIRQYCQKISLNVDELLFLKKEEESIIEYTSRLIKTFGCQVKSPKTERKAHLPPLDDITTLEKSLEKLNHKWNQLKIKADLIDQKLSAFKHAKQDYFQLKKEWKNKWFFTKAFYWFISLFIEVSEIKNLKAAHEHLTQTQNDLKQELQNHTSKSYCSKLQKQLRKLEHEQTCLKGEITLKKEIQRQKEHKPKFELLTDKKLEKDIVATSDFKENESSYFETSSSNDYYGFFKNNLPSRYTLQAVAVGVAAIAIQNLL
>NC_013861.1|WP_003635973.1|2812999_2814040_+|hypothetical-protein
MNITRDIINKAVEAKIITQKQSEELIAFIRKQPGQNKGFGLTNVLYYLGGLIAIGAMSLFMTLGWELFGGWGILFLCICYAILGLSLSDIFNKKGFIVPAEICATFVVFLTPLAIYGLQKGMGWWPPDDTVFREYNYYIKWHWIFMELGTLAVGIIMAWIYRYPFMIMPIAVTLWYMSMDFTAMLTGGESDFELSEKVSMYFGLIMLLIGFWVDFRSRQSEDYAYWLYLFGVLTFWCGLSAQHSDYELSKFIYLCINLILILIGIILSRKVFTVFGGIGVCLYLGHLAYDIFKDSYFFPIILTLIGLGIIYLGILWQKHEQKMTIAIRKILPKSLQELLQARDQLI
>NC_013861.1|WP_003635975.1|2811505_2812909_+|YdgA-family-protein
MKKWIGYLLSLVVLVLIIYDLMGLMVQNTLGNIINKIPKNPIMTTKIDKFQHGWFSSKALWIFKMHIPAQTITDKNGVPKTEPPLDFEMTLPITIKHGPIIFTNDGIRFGIGTITTQPETHYGAFINYLNRIIIEYNLPSFGTHVKEVSNNEEFQFNWMGLSALLSISSNIDKLDSYLKLYGIDGSGNNSVFKIGEITYSFNSKRIQEWLWIGKSHFNISSISVTSNNQNILDLQEFDFILSSDIKNEALNFYCKLSLQKLLANNQNYSPAILKLSLKNLDPEIMAKLNKQTFNMLQTSDSHLVGLSLATELPKLLSKGSVLELSEMTINLPEGKIVGNFKISLPKTEINDLSKAMQQAHGQGYFKAPTTIVKELMTSSIKSNLSNVSQQIEQTSPTQDVSAQSPANPTSRTPDLDEEAKKQTNQILKKLVEKGFLKIKDKDYVLQFKLENQQLIVNGKLFTPDMLR
>NC_013861.1|WP_012979304.1|2825327_2826314_+|hypothetical-protein
MLSRIEKPINLQKQLIILINPTKNDAMGSKLGLFLNHTLARGKALNATNSAIMIIKKEGTNQVEALDVKNYNFFDSELFSKDSPREKKLLIDFQDKMHPLDETASYDEIVIIGSGVPLKGSNTYASINGLRNNFFPSLVTCIKNIIGTHLKDNGHVRVQICHAATKSPIVTSDEMIQEQRPLSECIQVERKNFTIHAPSSYSVISPNDGRAIDVAFKGTSNQFDEFAKHVKKFLNYKNSNDYIRKMTQIFVLENEDKYHYTKIIKNLSIVNPQQEEFLIEIAEDKVSFKKNKFGLFAKSASCKKSIPGEPEDAHSASEEMSLSNFFGN
>NC_013861.1|WP_158304182.1|2827011_2827185_-|hypothetical-protein
MRPPAVAEGDGLEEGLGTAKRHPLQQAGGLWNLRYKMKCLARPVLFLRLPAVVEGDG
>NC_013861.1|WP_003635946.1|2827973_2829209_-|MFS-transporter
MSASRVVAWFVWVVASIFYAYQYVLRVMPNIMMDDITSQFHIDATVFGQFSGIYYLGYSLMHLPIGIMLDRFGPRKVMTVCILLPVIGLLPLIFADNWIYPLIGRALIGIGSSAAILGTFKIIRMSFKEQYFSRMLSFSVMIGLIGAVYGGGPVSYLSHTLGYKVVVEIFIILGLILACVTYLIVPEEKPTYHSSVFTNVKTVFSNKKVMLLCFFSGLMLGPLEGFSDVWGSGFLKHVYGLEPSVANYLPSMIFIGMCFGSPVLSLIAEKTGYYLGTIITAGIIMCLVFVALVAGTLTVTTITLSFVLVGMCCAYQILAIYKVSTYVPDNLAGLTTAIANMIIMTFGYGFHTVIGVVVNAYGGIRDANAFIYGIGVIPITLALGVTGILVLAYQDKFGTRRSVIKERLSKA
>NC_013861.1|WP_003635943.1|2829410_2829878_+|Lrp/AsnC-family-transcriptional-regulator
MDRIDKKILDILQANCKINNQELADMVALSPSPCLRRVKLLEDHGYIKKEVALLDPEKIGLKLSVIVLVGLDNHQPTVMSHFEEEIRFLPEVIQCYMITGQSADYLLKVIVPDLNAYQTFLLDKLTRINGVSSVQSSFILRTICETTSLPLNHLE
>NC_013861.1|WP_003635941.1|2829970_2831341_+|TolC-family-protein
MLKRISIFLLLIEIVTGCHRNVEQQVSTPLKKFPSSTKAYKPVNNLPYTAWWKQFHDLELNQLIETGLKNNMDIHIAIGNVQQAQGELQQIKLSWIPTLKLFAGYSTNPALGIPGAFYGVWPYYVLNIMQLYTQQKQATYNLQVYQAAVDGMRLALIGQITTAYFTLIAQMEQLRLLQQLDNDLKSLIALSQQDIKIGLVNEIDLAQLQSDEQIIAAQIKPILHNIVFSENALRFLINEIPGRVKNNNNFATLDFTRFKPGSLPATVLNNRPDMKMAEYALKASRIKISVAYSNFFPALQLDDFLGEVSSPHSTFAQSVDTYVNWTIAPSVLGNVAASKGAYHAKVAEFEKTVKRILKEVDTDYSANKRMNEQFVAYAQAEEDYRRKYKLQQGLLKTGLISYKDLLQSKIYLDNLALTTNQAKLELAMSLVALYQDLAGGYAYHLRPKKLQTDSST
>NC_013861.1|WP_003635939.1|2831392_2832421_+|HlyD-family-secretion-protein
MKNFIQFRTKIKKRYTRLKRSITLVNTIIFIGILTTVIYIFSYLFPFTDNAFVVNNVRPVAALTSGYITDLYVQNGDVVKKGQKLFTVFQKPYIYTVEQLTADLASAQAQLAVLKTTYDRDLKLSENEQRNYIKLYQDDQKYRKGYRIKSVSLMTLQNSQQETQAAKDKWQAALKQLEIDKNQIEVQGNEIKSIYARLKNAKVNLELTNVYAQGNGIIQNLFFTIGTPVNINQPLFSLVDTDNVYIQANFNETDLRDVRKGSKVLIFPRMYLSRKVFHGVVESDYWSANRQLVDNRTQLQNVVNENQWILLPQRLPVIIRITDLDPHYPLRVGTSAYVYIKV
>NC_013861.1|WP_003635937.1|2832401_2833334_+|hypothetical-protein
MSISKFKQWLDEVDPYAIQRITLYKSLFIATVEVYVYWLFQPVSFMAFFMPFLLTSLYEAPVLSTFKEKEQLLIFITIVIILISVTFYLVYPFRVIFFFFSVFVLSVTYFCVLRYFYTLKNLTMLLISSGALVLGIDPPANLEVVYGLISSIALSMTFIFICLRIFPNMYLIVWNRALQKFIQYLEKDIDYTINKNDNKPTWEEIMHLGIVRNYTKMLPKKYMMPAYRISVNIRNIQHSLDNLYYETMNEAFWYGIKNNLLWLRLQMHANSPCGLPQFPIKPNTRLQHHVAMCLDHAFSSWNKLCLLKMH
>NC_013861.1|WP_003635935.1|2833312_2834197_+|FUSC-family-protein
MLTQNALKRKLDYARFVHLAIMFMVAMLIYLFSNIPHKWWVLLTVIVISAGIEPGLIVKRAIYRIGGTFAALLILIPLLYLTQFNYRLIPVIFIVAVIGFSVSSINTNRYDISVFFITLIAFFLLAQTTEINSPEGPFVMMLNRGICTLLGVAIVLIGDYFLFQTFHYSQKLYLFHQMMVYNFFNDVVQQITQTSPHRINSSIFVAKLRTQVIKICSPITVSSQNLKLEAKVSPQTIKRIDVFQETIWEIRRVLFALSVSEFVLHSPTTTQKHLQRFNTLMNKAKNNFIYIAEE
>NC_013861.1|WP_003635934.1|2834212_2834734_-|hypothetical-protein
MSRFPNKTHYELRQYFKKLSLEQLKEQNRSYGPHFENLEEKIDKCSQDLAAESKHWQTLKDQKSTHELSYDSVVLSEQEFRQNIESLNDIMDHSERFLARKSVGVSPSELYYQQLSCLENPIQQSNLMIERLANKLEHLTKKKKEAISELKTLNSIIEEKEQLNNVPQVVHRY
>NC_013861.1|WP_003635933.1|2834926_2836249_+|polyhydroxyalkanoate-depolymerase
MFFNPLDNRYLYNIYDFNMRLLQPYSDYCENLARRFRRVSDNINLPYKIPYTSDDTQISFRKILEATSSHYRRVAGYAYVFHMITNVYDKPKFDINQIKIDDEYYDIQEEIIDKQSFCNLIRFKKTYADHLNLPKMLLVAPMSGHYATLLRDTVINLLPLYDVYITDWKNARDVPLTEGSFDLDDYIEYMISYFNLLGPNLNVMAVCQPTVPVLAAVALMSTNHSANLPRTAILLGGPIDTSQSPTTVNDLAASRGDDWFQQNVISIVPSRFPGAMRLVYPGFMQLAGFMSMNLQRHMESLQRAVDRYAENQKEAAFKIIKFYLEYFSTMDLTAEFYMQTINTVFQEKLLTTGRYKSRGHNVRLQDIQKTAILAIEGERDDITGVGQTRSVISLCKNLPDSMKKYFLAEEVGHYGLFNGKKFRNIIIPEIHKFTQTYADS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2372620 : 2379437

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003636739.1\|2372620_2373418_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.1e-23	34.2
WP_003636738.1\|2373551_2374514_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	32.1
WP_003636736.1\|2374513_2375041_+	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	1.4e-24	47.1
WP_003636734.1\|2375037_2375610_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_003636733.1\|2375590_2376133_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_003636730.1\|2376129_2376855_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.3e-19	26.0
WP_003636726.1\|2377074_2377641_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.5e-56	53.2
WP_012979234.1\|2377630_2378665_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-74	45.6
WP_003636724.1\|2378657_2379437_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-58	52.0

DBSCAN-SWA_2

2931231 : 2940481

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003635765.1\|2931231_2932914_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	1.3e-18	29.1
WP_003635764.1\|2933247_2934573_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	2.8e-48	31.9
WP_003635763.1\|2934583_2935732_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.6e-127	59.2
WP_003635762.1\|2935840_2936953_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.7e-51	35.3
WP_003635761.1\|2937088_2938228_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	5.7e-26	36.7
WP_003635760.1\|2938531_2940481_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.5e-146	49.4

DBSCAN-SWA_3

3124175 : 3175798

Caldibacillus_phage(11.11%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003635442.1\|3124175_3124502_+\|transposase	transposase	NA	NA	NA	NA
WP_125461268.1\|3124467_3125001_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_003635436.1\|3125227_3126304_-	DNA polymerase IV	A0A290GHP0	Caldibacillus_phage	1.6e-14	32.2
WP_003635433.1\|3126487_3126994_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.9e-27	41.9
WP_003635431.1\|3127279_3128305_-	GTPase ObgE	NA	NA	NA	NA
WP_003635429.1\|3128474_3128753_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_003635427.1\|3128766_3129078_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_003635425.1\|3129269_3129926_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_012979347.1\|3130084_3130654_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003635422.1\|3130710_3131802_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003635421.1\|3131880_3132849_+	octaprenyl diphosphate synthase	NA	NA	NA	NA
WP_080619950.1\|3132957_3133227_-	hypothetical protein	NA	NA	NA	NA
WP_012979348.1\|3133522_3135154_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_003635416.1\|3135643_3138406_-	hypothetical protein	NA	NA	NA	NA
WP_003635412.1\|3139462_3141316_+	peptidase M4 family protein	NA	NA	NA	NA
WP_012979349.1\|3141569_3142316_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_003635408.1\|3142658_3142871_+	ORF6N domain-containing protein	NA	NA	NA	NA
WP_003635406.1\|3142914_3143031_+	hypothetical protein	NA	NA	NA	NA
WP_003635403.1\|3143116_3144286_+	tetracycline destructase Tet(56)	NA	NA	NA	NA
WP_003635401.1\|3144515_3145139_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_012979350.1\|3145609_3146284_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_003635395.1\|3146707_3147556_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003635393.1\|3147725_3147953_-	ChaB family protein	A5IZT6	Spodoptera_litura_granulovirus	1.3e-09	42.7
WP_003635391.1\|3148130_3148415_-	DUF3175 domain-containing protein	A0A0F6TH17	Sinorhizobium_phage	4.7e-22	66.3
WP_012979351.1\|3148713_3149211_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012979352.1\|3149345_3150950_-	hypothetical protein	NA	NA	NA	NA
WP_012979353.1\|3151279_3152050_+	hypothetical protein	NA	NA	NA	NA
WP_003635384.1\|3152092_3153379_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-96	46.2
WP_003635381.1\|3153571_3154342_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_003635379.1\|3154338_3154791_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_003635377.1\|3154946_3155990_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003635375.1\|3156004_3156505_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_003635373.1\|3156672_3158985_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_003635371.1\|3159119_3160472_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003635370.1\|3160635_3161418_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003635368.1\|3161446_3162205_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.0e-22	40.3
WP_003635363.1\|3162577_3164119_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_012979354.1\|3164111_3165335_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_003635359.1\|3165425_3166778_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	3.6e-19	26.3
WP_003635356.1\|3166967_3167810_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_012979355.1\|3167923_3168499_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003635352.1\|3168630_3169296_+	hypothetical protein	NA	NA	NA	NA
WP_012979356.1\|3169455_3170184_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012979357.1\|3170378_3171863_+	hypothetical protein	NA	NA	NA	NA
WP_003635346.1\|3172359_3173658_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	5.3e-68	34.1
WP_003635344.1\|3173744_3174659_-\|protease	protease modulator HflC	R4VJU7	Alteromonas_phage	1.5e-05	26.3
WP_003635342.1\|3174661_3175798_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013861

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection