CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013949	Helicobacter mustelae 12198, complete genome	7 crisprs	cas1,cas9,DEDDh,cas4,cas3	0	8	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013949_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_1

24706-25400

TypeII

Consensus_repeat	Method
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CRISPRCasFinder
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CRT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	PILER-CR

10 spacers

cas2,cas1,cas9,DEDDh

The CRISPR arrays of NC_013949_1

>merge|NC_013949|1|24706-25400|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTAGAGTTAGTAGTTCTCTTTTTCTTTCCTGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTGAGCTATACGGATTGCAAAGATTCTTTTTGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATGCTGCGGTCTTGATTATTGGTAGCATTCGTGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTTTAAAGTTTTGCGGCGATGAACTGCATGTGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATCTTGCTCCACCCACACGTTATACTTGCTAGGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTCAACGCCTGCAATATTGTAATTAATCTTCGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATCCCTTCTTGGTTTTGATGCCACTCTAAACGGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTCGTAGCGTTATCTTTCCCATGCACAGCATGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTGATGCAGTTGCAACACGTAGAAAGAGTCTGTTTTAGCCACTTCATAAATATGTTTATGCTAAAATTTGGAAAAACTTTACATAGAGACCCGCATAGTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT

>NC_013949|1|1|24706-25400|CRISPRCasFinder
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TAGAGTTAGTAGTTCTCTTTTTCTTTCCT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TGAGCTATACGGATTGCAAAGATTCTTTTT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	GCTGCGGTCTTGATTATTGGTAGCATTCGT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TTTAAAGTTTTGCGGCGATGAACTGCATGT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CTTGCTCCACCCACACGTTATACTTGCTAG
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TCAACGCCTGCAATATTGTAATTAATCTTC
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CCCTTCTTGGTTTTGATGCCACTCTAAACG
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TCGTAGCGTTATCTTTCCCATGCACAGCAT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TGATGCAGTTGCAACACGTAGAAAGAGTCT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TTGGAAAAACTTTACATAGAGACCCGCATA
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT

>NC_013949|1|1|24706-25400|CRT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TAGAGTTAGTAGTTCTCTTTTTCTTTCCT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TGAGCTATACGGATTGCAAAGATTCTTTTT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	GCTGCGGTCTTGATTATTGGTAGCATTCGT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TTTAAAGTTTTGCGGCGATGAACTGCATGT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CTTGCTCCACCCACACGTTATACTTGCTAG
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TCAACGCCTGCAATATTGTAATTAATCTTC
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CCCTTCTTGGTTTTGATGCCACTCTAAACG
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TCGTAGCGTTATCTTTCCCATGCACAGCAT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TGATGCAGTTGCAACACGTAGAAAGAGTCT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TTGGAAAAACTTTACATAGAGACCCGCATA
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT

>NC_013949|1|1|24837-25400|PILER-CR
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	GCTGCGGTCTTGATTATTGGTAGCATTCGT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TTTAAAGTTTTGCGGCGATGAACTGCATGT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CTTGCTCCACCCACACGTTATACTTGCTAG
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TCAACGCCTGCAATATTGTAATTAATCTTC
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	CCCTTCTTGGTTTTGATGCCACTCTAAACG
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TCGTAGCGTTATCTTTCCCATGCACAGCAT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TGATGCAGTTGCAACACGTAGAAAGAGTCT
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT	TTGGAAAAACTTTACATAGAGACCCGCATA
GTTTTAGCCACTTCATAAATATGTTTATGCTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_013022389.1\|26717_29792_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_013949.1\|WP_013022390.1\|30140_30731_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NC_013949.1\|WP_013022392.1\|31997_32198_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022378.1\|10241_11180_-\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|179681
NC_013949.1\|WP_170118045.1\|25512_25821_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_013949.1\|WP_013022377.1\|9614_10226_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022380.1\|12013_12712_-\|outer-membrane-beta-barrel-protein	unknown	unknown	unknown
NC_013949.1\|WP_158303454.1\|13576_15043_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225387
NC_013949.1\|WP_013022388.1\|25798_26725_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_013949.1\|WP_013022396.1\|34775_35033_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022391.1\|30918_32001_-\|DUF354-domain-containing-protein	unknown	unknown	gnl\|CDD\|224730
NC_013949.1\|WP_013022383.1\|15282_21573_-\|hemagglutinin-repeat-containing-protein	unknown	unknown	gnl\|CDD\|368641
NC_013949.1\|WP_041913003.1\|21612_22329_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NC_013949.1\|WP_013022394.1\|33107_33746_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
NC_013949.1\|WP_013022393.1\|32194_33025_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NC_013949.1\|WP_081441261.1\|12722_13484_-\|outer-membrane-beta-barrel-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022385.1\|22618_23017_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022395.1\|33745_34489_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236281
NC_013949.1\|WP_013022379.1\|11176_12004_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|377117
NC_013949.1\|WP_013022386.1\|23165_24332_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_158303454.1\|13576_15043_-\|hypothetical-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	7.24373e-55
NC_013949.1\|WP_013022378.1\|10241_11180_-\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|179681	PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional.	0
NC_013949.1\|WP_170118045.1\|25512_25821_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.36775e-39
NC_013949.1\|WP_013022390.1\|30140_30731_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	6.17182e-06
NC_013949.1\|WP_013022388.1\|25798_26725_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.97439e-99
NC_013949.1\|WP_013022391.1\|30918_32001_-\|DUF354-domain-containing-protein	gnl\|CDD\|224730	COG1817, COG1817, Uncharacterized protein conserved in archaea [Function unknown].	3.02152e-40
NC_013949.1\|WP_013022379.1\|11176_12004_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|377117	pfam03740, PdxJ, Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyzes the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.	1.42543e-112
NC_013949.1\|WP_041913003.1\|21612_22329_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	0.000280996
NC_013949.1\|WP_013022394.1\|33107_33746_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	6.91666e-118
NC_013949.1\|WP_013022393.1\|32194_33025_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	5.30525e-107
NC_013949.1\|WP_013022386.1\|23165_24332_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	2.13103e-133
NC_013949.1\|WP_013022395.1\|33745_34489_+\|3'-5'-exonuclease	gnl\|CDD\|236281	PRK08517, PRK08517, 3'-5' exonuclease.	5.84199e-97
NC_013949.1\|WP_013022383.1\|15282_21573_-\|hemagglutinin-repeat-containing-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	2.61443e-23
NC_013949.1\|WP_013022389.1\|26717_29792_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	1.46841e-158

>NC_013949.1|WP_013022386.1|23165_24332_-|class-I-SAM-dependent-methyltransferase
MFQKFLIKQVLKKWNFGRYVIEFWDGEQVKIGEGEPDFKITLKKPFGLNAFSQDLSLFFGEAYMDGNIEIEGDFDAISYVMYQFNNHHHLNKHKHITSKIHTKQESKNIKSHYDLGNDFYKLWLDPTKSYSCAYFKNPTDDLHQAQINKIEHTLKKLDLKKGEKLLEIGCGWGWLSIMAAQKYGVEVVGITLSEEQHKEATQRVKDCGLEDKVTIMLKNYQDLEMENYFDKAVSIGMFEHVGRANFPLYFSKVKQCLKPSGSFLLHTILASFEGETNAWIDKYIFPGGYLPSLRELISIASEFDFHLLLAESLRLHYAKTLDIWRENFEKEIEEVRKMYDERFIRMWRLYLKSCASAFRVGSADIFQFLLTKGVDNNIAMTHARIYQD
>NC_013949.1|WP_013022385.1|22618_23017_-|hypothetical-protein
MDLEVCRNPFCRRKSHTHDRVITNKRQMIQGQKRGDINQGNPTRCNAGCFLSRNASNKPKTLKIHYRFDKAGNLLVETPKTLGRVGVEFQSHSLAWLGCKCKLPRTCLKPLKALLHPSRLCFFAIFYSNACK
>NC_013949.1|WP_041913003.1|21612_22329_-|outer-membrane-beta-barrel-protein
MIQSSGSISYKGTFQGVTQELHGSAFYKMDSSKNFGPLVSVNLGTEHLFFQDIFGFRWSIGVGYQSLAIKDRILPTFPDPQLNAYNTAIKTLEGPRFDASFDLMLNFFRNEKFSFGMFGGIQYNLYLAKFATKDSDFSKASIKITNDAFSLDLKTQGFNGQNTFGNAAYRVGLSMMFAKHHRVEFYISRNIASNSYKRNNERKNIYRQGNLEEKQVFKISEMLKLGTNTYMLSYKYVF
>NC_013949.1|WP_013022383.1|15282_21573_-|hemagglutinin-repeat-containing-protein
MRKIKQSLALLNALCLLGSSAIANPITIDTDHTGPSPTLGKTDNGVDLINIAKPNQAGISSNFYKDFNVEKEGLILNNISQKEDLAKTVLAGYIAANPNLETAAKLILNQVSGNKLSNLLGFLEVAGKQADVILANPNGITCHGCGFINIENLTLATGKFSQDEFHRLNQLKAYEELKTLSLDITQGKIITSALNASNTKTLTFLAKNMEVNGIVEGGDKIRALLGSNHVNFSPSVLLYEPIKLEGEQQALGLDVTYLGGVFAKSIYLVATNEGIGVKNSGILASTASQNSGDGGFVIDANGTIEITKPQTALIKQIQATKDPQNEGEKAPAPSALPLIFSNQNLDISAKNLVNHSILYAKDNLNIKAENILNQGALEFIQNPATREKFYSRDPNINGYFGGSKTYYMTYDYTIKTIKESIQKDTYSPAMMLANNIHLQSQTTTNDNALIQANNDFQNASKEFINKAPQAKSTTSYEGTKTLYNRYGKCFAGVKIGFNCASTRTTSAFVRADKVEFTDVELPEITLQDTSILLQDTLQNTKSSTPLPTPYVQNKDVLDLLVARRMQDAPSTRRDIMDFSIFQGSYQKNLLLGLQAHSIVISSQNTYNSSAITGNDITITSQALLNENGTLLARDTLKLKGEAITNQGGKILAQNISIDADGFTHTSSITSHKKDRIVSTNVSPLIAAVPVSKSYSEVFMKLAGRSYSKTVVIKKKNEELSSTSENTNLASLGILEGNHIIIKSKETHLIGANVDAKGDLLIQSDALSVKTLALKDNYADVVNTRNHTNQQVTSIQSGSDIVINSKQTNLISANIDAKGDLLIQSDTLNVKTLALKDNYADAVNTRNHTNQQVTSIQSGNHLLIDAKKQEYASVKMKGDTIALTGENILFDTSVNKSENKKLTRGILSPKLSTAPTTQHIANEIQGINLAIHSKSDFTAYNFDADITDSLSLKSDANLLISNHADSIQSPRNNTNKYSTQIDKSIAQTAKSIKLESKNIALIGANVDAKGDLLIQSDTLNVKTLALKDDYSDGTNIRNHTNQQVTSIQSGNHLLIDAKKQEYASVKMKGENIALQGENIRFDTSTLFDASTKESFSKGKKFDIKSFFLRPLVLETTTQHIANEIQGTNLAIHSKSDFTAYNLQTDSQNLAIQSDKNILISNHADSIQSTQDNINKYSTQIDKSIAQTAKNIKLESKNIALIGANVDAKGDLLIQSDTLNVKTLALKDDYADAVNTRNHTNQQVTSIQSGNHLLIDANKQEYTSVKMKGENIALQGENILFDTSTKESFSKTREKKTSGWFLDGKTTITTTTASTSQHIANEIQGSNLAIHSKNDFTAYNLQTDSQNLAIQSDKNILISNHADTKNVVVDTEIKKRSLYGSISKDKISAGLRTSNTKIHQDTNDKNHHNTTLKANHASFVAQGNTAIQSTNIQSDDLALQGESIALKALQDEHTSLETKHVTSHTFGVTINRRPLERLVIKYANSLGSKLGIKESIKVPEKEDIKAGFSYQYSDDFTKTQSYATSTSNLAIQSKNLQMDSKNDTVITNADITTDVFAAKNKNLAINTLENVKTTTTTKYNDTINASLKLSLGKQTGIKAHADYAHDGSKEKNTETSHVANHFKIGTLNLDTKNDVKIQGANLDIKEDANITAKNFALSSVSNTETNEKTDKKHNAALDFTYNGGFNVALSGGYGDSSSKENKVTQVASSLSAKNLNLKTSEKTQILGSRLNIEEDANITAKSFIITSTENSFAKTTHSKDANASLSAGFDGSLDLGANGGYTQKVTTQSNNSALSSDVSIKNLNLQSEDTKILGSNLTTKKAQITSKSLWIGSIQTYSKDTESSLGAQAGLGNKSGVKTAWDYNNKAQNSTGQTASHVSLGDFQIEVRGDTQIKGSHLSGDNGSIQTQNLNVLSSEETQKSHNIGLGAGNTNLKFRGNASLDLHTQTTQSASSIEAQNLKLAVKNDMNVESSQIKSENLDAKIGKNLNMVSKKDTEASFGVSGSLDMATKKKDFGIKGSIASQVKQQSSIEASNANIKVGNQTKLVGAKIEAKKGSFDGEKVSKESLIDYKVSLDKKSGKKLQKDFGHGITKSHISIN
>NC_013949.1|WP_158303454.1|13576_15043_-|hypothetical-protein
MCFLVKEITLSPLENTLENQKAFKKYFGFGEKIAKAYTNQCLNEKSINKLLQELNEKTIKKGFLTSKFGILPQDLKSQRLEIKLDIGRIHQITYNHNNLFFSFKKDFDIKEGDVLDLQKLQAGMANLKKMTHIDATMKILPSDQKNASDIVIHVEKKSFPFSGVYIFDNGNLKFLYQHTLLLAWENPLKLSDKLQSYLLASFFHDERIHKNYSIYHSLSYGVPFQQFFFEQNLAYSFNSFQIKLANFSPVYTGYSINTDTRMSYVFLRTQEHSLSFGLNFGARISKNFLENVLLVTQNRKVLLYSFFLRYALSLPTLQFNVDFSGLYGHSLANEFLHAYDYFIPVVNLYLYRPFKFFGRSLIYTGAIKTQVGSNKLYANDAFIIGGRYTVRGFDRLNYSGQMGVLCRNDLNLYIPFLKKFQLVPSIGFDVGYVKDLMSKDDIALSGGGLGIQWIQKYLNLQAWWYFAMFSSKSSVPKQNFFFSIAFNW
>NC_013949.1|WP_081441261.1|12722_13484_-|outer-membrane-beta-barrel-protein
MMRKIFFPILFGFLLISTKLFAKEDIEFFIGADYGRMAHIKNSAKFKGGQNIYNFDDPLYGHLFLGSFGVEMGIGNTEILRKIFRSRVFIEGGYGKFGTNQGYELAGGLPNVKIKSLENYYVGGGADMMLNIIPFSYFSLGVFLGMGYDFVISDLSTKGSFLGSKASDYSGAQIYLSGFDGRFFHNEIYGRLGASIRFLKTQRIEFIVRIPAIENQGFAKIHRTLNKSNGEVYAKEKLLITTPTWLISYKIIF
>NC_013949.1|WP_013022380.1|12013_12712_-|outer-membrane-beta-barrel-protein
MKKFLAIFFILLSSTYAKGSFLFGAGTDYIYEKTKYDSSGQKAQDWDVFATTRQEINGLKANINIGYEYLFFDIIGFRPMITLGYGALFSSKDNIVDRKPRNSLSLDSSYILSARAWLDLLINFPIPAQNLEVGFFVGGGAGIGYGNSTFKEKDLNSLETIHSFSEKTSLKQFLTRLGITFKINSQHRVDLFVIAPVYSIIDIKNSRYGEIHIRERNEFFPNSGGLNYYFLF
>NC_013949.1|WP_013022379.1|11176_12004_-|pyridoxine-5'-phosphate-synthase
MHLGLNIDHIATLREARKINDPNPLEAIFIAKNCGVFQITIHLREDRRHIHDLDVKRILQSSFLPINVECALDENIIEFLCAQKPYKITLVPEKREEVTTEGGLSLKNPLIKDVIKTFHQHGILVATFVDPDEEAILLSKEYGADGVELHTGAYANATLMRYSNLSRMQNSIVSLQNLSSKDLNSLIKQNLKSLHFASVLAHKIGLEVYAGHGLNYHNVEAIAKLPHITELNIGQSIIAKSVFVGLERAILDMIQIITTTKNQTTLLNNTKKNPL
>NC_013949.1|WP_013022378.1|10241_11180_-|4-hydroxythreonine-4-phosphate-dehydrogenase
MRKKPKVAISIGDSNGIGGEILLSAHQKISQYCMPIYCAKRELLDSMAEILHALPLPKNTSFSAPTAPLPEINPGSIASDSGLYSFESFGLACSLADHKEVDFLTTLPIHKYAWKKAGIPFIGHTEYLRERYKSEGIMMLGCEKMFVALFSDHIPLRDVSNHLTTQKLSTFLLDFFACTHFSPIAVLGLNPHCGDNGLIGKEDSMIAQSILSANKILNREIFFGPFSADSAFAPLMRERFSTFVALYHDVGLAPLKALHFYESINVTLNIPILRTSVDHGVGFDIAYQNKADTRSYINAILLGNQLKHNKAE
>NC_013949.1|WP_013022377.1|9614_10226_-|hypothetical-protein
MKKKDYEKIISDQKYYIQVLESTLNRAYVELADKKNLFEQTNQKIEKLHNDIDDLLYFIIHQNNENHKNTPISLQEYFRSFSIKGGKNLIFGIHIEQKFIKNSSIPTLQYHLYKNHCFIQKKYSFFGLVSKNKRDLHFIGKTFCQYLEFCFKQASESIIGIITLSLQEEEILIDYYGNRDIEREFQDFIKLYTKEESLENLFT
>NC_013949.1|WP_170118045.1|25512_25821_-|CRISPR-associated-endonuclease-Cas2
MRVLVMFDMPTKSKEDRKASAKFRSTLLKEGYFMLQFSVYVRICKGVKSANTYLERLHLYLPKKGHIRALILTEKQFDHMKILIGEISQAQKVQKPTPLTLF
>NC_013949.1|WP_013022388.1|25798_26725_-|type-II-CRISPR-associated-endonuclease-Cas1
MFDEAFRTLFMSKPAKLSHKNNNLIIHGKEDIGIPLRDIHTIVIDTPQITLTSSLMKELAQYKILVFFCDDSHLPSGVFSPFLAHYRSSAILDLQIHFSKQNKSILWQKIIQAKIQNQTNLLMQENKTSTATKLQALQKAVKLADGTNNEAKASALYFPSLFGRGFSRKDFSPINAALNYGYAIIRGCIARNLVGSGLIPSLGIFHSNQFNPFNLADDLIEPYRPFVDSRVLALRIENELTLSHRVELVNLLNTKVLLQGKFYPFHRSITRMVWSISNFICDRGKMIELPILDKESNGREVYESFSDV
>NC_013949.1|WP_013022389.1|26717_29792_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MIRTLGIDIGIASIGWAVIEGEYTDKGLENKEIVASGVRVFTKAENPKNKESLALPRTLARSARRRNARKKGRIQQVKHYLSKALGLDLECFVQGEKLATLFQTSKDFLSPWELRERALYRVLDKEELARVILHIAKRRGYDDITYGVEDNDSGKIKKAIAENSKRIKEEQCKTIGEMMYKLYFQKSLNVRNKKESYNRCVGRSELREELKTIFQIQQELKSPWVNEELIYKLLGNPDAQSKQEREGLIFYQRPLKGFGDKIGKCSHIKKGENSPYRACKHAPSAEEFVALTKSINFLKNLTNRHGLCFSQEDMCVYLGKILQEAQKNEKGLTYSKLKLLLDLPSDFEFLGLDYSGKNPEKAVFLSLPSTFKLNKITQDRKTQDKIANILGANKDWEAILKELESLQLSKEQIQTIKDAKLNFSKHINLSLEALYHLLPLMREGKRYDEGVEILQERGIFSKPQPKNRQLLPPLSELAKEESYFDIPNPVLRRALSEFRKVVNALLEKYGGFHYFHIELTRDVCKAKSARMQLEKINKKNKSENDAASQLLEVLGLPNTYNNRLKCKLWKQQEEYCLYSGEKITIDHLKDQRALQIDHAFPLSRSLDDSQSNKVLCLTSSNQEKSNKTPYEWLGSDEKKWDMYVGRVYSSNFSPSKKRKLTQKNFKERNEEDFLARNLVDTGYIGRVTKEYIKHSLSFLPLPDGKKEHIRIISGSMTSTMRSFWGVQEKNRDHHLHHAQDAIIIACIEPSMIQKYTTYLKDKETHRLKSHQKAQILREGDHKLSLRWPMSNFKDKIQESIQNIIPSHHVSHKVTGELHQETVRTKEFYYQAFGGEEGVKKALKFGKIREINQGIVDNGAMVRVDIFKSKDKGKFYAVPIYTYDFAIGKLPNKAIVQGKKNGIIKDWLEMDENYEFCFSLFKNDCIKIQTKEMQEAVLAIYKSTNSAKATIELEHLSKYALKNEDEEKMFTDTDKEKNKTMTRESCGIQGLKVFQKVKLSVLGEVLEHKPRNRQNIALKTTPKHV
>NC_013949.1|WP_013022390.1|30140_30731_-|outer-membrane-beta-barrel-protein
MKKILLSLLLFLGMMHLAHARFFIGSNGGFGFGFGTKSIQNLVYSSELGYQFFFEPKERVGMRVFGQLGYNNLLTSDSVIATTQPALGLDMLFEGTKEDHFFAFGVFGGIQAGINSALPMSRKALARLAGLSPSDPVPLYRLNFLIKGRIGMSFIFVEHHRVEFFALIPIAPRSINAKRDYIPQTYNFMMGYKFVF
>NC_013949.1|WP_013022391.1|30918_32001_-|DUF354-domain-containing-protein
MIWIDITDPKYVLFFRSLIPLLETIDSVVVTTRKSKDYEECYALLELFQIPSICVGNYGGNEIFDKLEARLKRQEGFLELFKRIGKPNLFITGVSVEGTQTAFGLGIPIIQFSDTPLASHRFELSKITVVAKLTLPLSSLIFRPFVVPEICYSALGVEPKNIIAYPFIDVALWLKDLPQGEDFRKRYHLPTTRPTILLREEEYKAHYVRTKLPIIYESIPLLNELDANLVIMPRYGSAELHRQFSSLKNLTILEEKLPPQDFYPFIDILIGGGGTMNLESCYLGIPTISTRSLFLFHDKYLLDHHLMQHHTDSQALYHQVKAWIAQETKRKNQREFFESSPANFQEIFAIIQERYYKHQK
>NC_013949.1|WP_013022392.1|31997_32198_-|hypothetical-protein
MSENPAKDTFALQLDRALQDLQKCQKERNYDSCLKCEKFFECPVRKSYVSAVYKSMNKGEQGGFEF
>NC_013949.1|WP_013022393.1|32194_33025_-|class-1-fructose-bisphosphatase
MQQIFDTLKHIALEIHALLQDSNTTYLESTNSTGDVQLQVDVIADKLIEERLLALPSVRGVASEEKPNAIEKAEGEFLIAYDPLDGSSLVDSNLSIGSIFGIYAQDFQGKNLIASAYIIYGPRTEIVFAHKNISYQSYNGKQWIQKPTPKLQTKGKISATGGTQKHWSKEHKALIESFFAAGYRLRYSGGMVPDLHQILIKGGGIFSYPATSDAPKGKLRKLFEVFPFAYIYELCGGEAIGENGVRLLDLPCAHLHDTTPCYFGSLEEIALFKEKK
>NC_013949.1|WP_013022394.1|33107_33746_+|ribulose-phosphate-3-epimerase
MLVAPSLLSANFMRLGEEIRALCDAGADFLHIDVMDGHFVPNLTFGPVVLEQIAKYASKPLDVHLMVENVSFFVELFAPLKPEFMSVHIEEVKHLHRVIESIRKHGIRPCVVLNPHSSEQDLKYILEDIDMVLLMSVNPGFGGQKFIPSVCKKAKMLHHRIQEYNPKCLIEVDGGVNEKNISLLKESMVDVVVAGSYIFNQSDYKKAVDSLR
>NC_013949.1|WP_013022395.1|33745_34489_+|3'-5'-exonuclease
MYKKVYAKFQKDSIEREKFFPYMGEILGVFDEDLILELLRDCGLWIEESGDRLELGTLQKDIKDGVFCFVDIETTGSKPNHSSIIEIGAIKYHGGEIIDTFETLVFSQSVPENITELTGIDAGMLADAPSEREVLQRFRKFLGNSVFVAHNVVFDYGFISDRLLRYNEPYLLNPRLCTVELARRGILSARYSLGHLNAFLGIGIDKQHRALSDAFICLKVFEIAQLTLPNHVQNIQGLIEYTRGKKL
>NC_013949.1|WP_013022396.1|34775_35033_-|hypothetical-protein
MADVNITPESIMEKLKEKGAKLSCPSCHGKDIGIAPGFTNILLQNKIDGSLSVNGPHVPAIYTVCNKCGSMNPHAVAVLGILNQQ

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Crispr_ID: NC_013949_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_2

561355-561444

Orphan

Consensus_repeat	Method
ATTGTGATTTTATGTTTTTATCCTTAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013949_2

>merge|NC_013949|2|561355-561444|CRISPRCasFinder
ATTGTGATTTTATGTTTTTATCCTTAAACTCAAGAAAATGATATTAAAGAATGGTTTTTTATTGTGATTTTATGTTTTTATCCTTAAACT

>NC_013949|2|2|561355-561444|CRISPRCasFinder
ATTGTGATTTTATGTTTTTATCCTTAAACT	CAAGAAAATGATATTAAAGAATGGTTTTTT
ATTGTGATTTTATGTTTTTATCCTTAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_013022842.1\|569168_570971_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NC_013949.1\|WP_013022844.1\|572704_573385_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NC_013949.1\|WP_013022835.1\|547297_548251_-\|arginase	unknown	unknown	gnl\|CDD\|162262
NC_013949.1\|WP_041913082.1\|552036_552531_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022846.1\|574373_576017_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_013949.1\|WP_013022836.1\|548273_549707_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223903
NC_013949.1\|WP_158303463.1\|547099_547276_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_158303456.1\|554557_554725_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022845.1\|573365_574370_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_013949.1\|WP_013023763.1\|552546_553794_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|235010
NC_013949.1\|WP_013022832.1\|544522_544861_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181423
NC_013949.1\|WP_049762223.1\|571148_572498_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NC_013949.1\|WP_013022838.1\|563050_564538_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NC_013949.1\|WP_013022841.1\|568532_569159_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NC_013949.1\|WP_013022833.1\|544860_545619_+\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013022834.1\|545615_546545_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NC_013949.1\|WP_013022837.1\|561484_563041_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NC_013949.1\|WP_013023762.1\|549917_551060_+\|NAD-binding-protein	unknown	unknown	gnl\|CDD\|223758
NC_013949.1\|WP_013022839.1\|564548_565280_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NC_013949.1\|WP_013022840.1\|565660_568360_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_013022842.1\|569168_570971_-\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NC_013949.1\|WP_013022844.1\|572704_573385_+\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	7.92706e-54
NC_013949.1\|WP_013022835.1\|547297_548251_-\|arginase	gnl\|CDD\|162262	TIGR01229, rocF_arginase, arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).	2.4642e-98
NC_013949.1\|WP_013022840.1\|565660_568360_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	0.000114791
NC_013949.1\|WP_013022846.1\|574373_576017_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_013949.1\|WP_013022836.1\|548273_549707_-\|amino-acid-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	2.71583e-160
NC_013949.1\|WP_013022845.1\|573365_574370_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	2.0406e-176
NC_013949.1\|WP_013023763.1\|552546_553794_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|235010	PRK02186, PRK02186, argininosuccinate lyase; Provisional.	6.06247e-28
NC_013949.1\|WP_013022832.1\|544522_544861_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181423	PRK08433, PRK08433, flagellar motor switch protein FliN.	4.20403e-58
NC_013949.1\|WP_049762223.1\|571148_572498_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NC_013949.1\|WP_013022838.1\|563050_564538_+\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NC_013949.1\|WP_013022834.1\|545615_546545_+\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	3.36865e-16
NC_013949.1\|WP_013022837.1\|561484_563041_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	4.25988e-153
NC_013949.1\|WP_013023762.1\|549917_551060_+\|NAD-binding-protein	gnl\|CDD\|223758	COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism].	1.36532e-166
NC_013949.1\|WP_013022839.1\|564548_565280_+\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.75843e-64
NC_013949.1\|WP_013022841.1\|568532_569159_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	1.87631e-103

>NC_013949.1|WP_158303456.1|554557_554725_-|hypothetical-protein
MEILWKKVFCKERGFSLNAREGNARARRNRDISTPARVVRRVDVCRISSGLSRDS
>NC_013949.1|WP_013023763.1|552546_553794_-|ATP-grasp-domain-containing-protein
MSIQSFIVLLGANQYLRERALKGAREVSDALIFIADKNAKFNKNRYFDGALQADSNDAQSLIQCIQEKQSLGFKLLSVIPLNDWVLKSANEINAFFHLPHLSLEVIENARNKYKMKCKFKEHGVPSSPFFLLEHEEELAKAIEVIGFPMIIKPYDFGGSGGVYLARNPKEASEKLALSKAIIAQYKNAFKIAGDKYLIEKYIDTQEEVSVEVLCFKDKCITLSVTEKYLSPKPYFSEMAHLVPSHRNLDKKLNEIAHNAALCLGIDKGLAHVEIKILKDSYWVIEVGARTGGDGILDQVERAFGVNPYALHIASYLGRDLSGFQMPEPKGSAFIGFLKAKEGKIQKIHYPLIDDLPKELESIKITAKEGDIAMPPKDWSAREGVMEFYYPHQFFKEKTNLPLELLQQWSEKIFES
>NC_013949.1|WP_041913082.1|552036_552531_-|hypothetical-protein
MKGYIFISGLYRLSCGALILAVNWMMAIQGPSFGSLALLVTLTFLPAAFVPLVWKKPLEGHKTTAYALICCGILSFCLYYFHHHNVVVLFNTFLWFFFFILESSWESWFASLSKSHTPQEIDKYSSLSMSVNQASLMIGPIFAAFLFKNTPKEVIFWLWDSFHP
>NC_013949.1|WP_013023762.1|549917_551060_+|NAD-binding-protein
MDMGLIKESMDLESRVALVPDDVALLTQRNVNVVVEDGAGENSGYSNAMYEAAGAKIVDTKSAWEQDVVVKCKEPLEHEYSLPREGATLFSYLDLAYQKSLCEMLIEKKITSICTETIAGARNDYPILMPMSVVAGRLAAHLLQHYLLALEHVEGFWGKGVMLGGLSGVQRSKVVVVGGGVVGMESAKMLSQMGARVSVLELDYIKLQTHPYCSMYDLEILSVNEANIINALDGAVGLVGAVLLTASQTPKVILRRHLRYMQKQGVVIDVACDLGGCIETIHQTNHSNPVYVEEGLLHYGVPNMPGIVAKTSSIAYSNASVPYLLYYVEHGLKGFLQANTKIVANTLGGLSAHNGYITQEGIARAFNLAFKSPLEVLKEL
>NC_013949.1|WP_013022836.1|548273_549707_-|amino-acid-permease
MRDTTSTELSRDINMRQLMMIALGGTIGTGLFVGTGGNIASAGPLATLLAYLIGGIIVYSIVLSLGELSSVYPTTGSFGDYASRFIGPSTGYMVFWMYWLSWVLTVAVEYIAIGLLMQRWFPDIPVYVWVIACIMLLFLLNFFSVKIFAMGEFLLSAIKVLAVFVFIVLGGIGIIYSFYLHGFDGVFGNFYFNGETQGLQKGLFPKGVGAFFGVILAVIFAYTGTEIIGVAAGETKDPSKIMPKAIKATLWRIIFFFLGAVFVVSVFLPMTDSGLSQSPFVSTLEKIPLPFFGVGIPYAADIMNFVIITAILSTANSGLYASGRMIYGLSQKKMFFPIFTKLNSSGTPTYALYLSLGITLVGMLTEAFAPEKIMASLINVVSFMVIIVWISISVAQYFFRREYLASGRLLKDLPYKTPFNPLIQIIGISGCLVGLIGAYMDESERIGGYLTLVFMGLCYVAYYLSKDKWGFKEEKGL
>NC_013949.1|WP_013022835.1|547297_548251_-|arginase
MILVGLEAQLGASKQGSDEGVKALIEALRPKHGELVRHMHRIAQERCILDKKFRYARSFEDYYVFCKEILIPRMQEVFLRKEFSLILSSEHANMFGIFQALRSVHKDKKIGILYLDAHADIHTAYDSDSRYIHGMPLGMVLNRVRSGFNCMNQSEEEAWQELCNLGLEKGTLEIDPRHLVYFGVRSTEQSERDVIKELQIPLFGIDSIRENMQEVVEQSKILLRDVDIIYLSLDLDIMDGKLFTSTGVRENHGLSFKELREFLQLLLEGFKDRLSAVEVTEYNPLVGLKNEEKEVLEILKEIIRICKDSSWGASLGD
>NC_013949.1|WP_158303463.1|547099_547276_-|hypothetical-protein
MIAQKDLAGIAHLFCSGIFPIVRHRISRGLMQRTLEQLLFNVYQARVDASNTTPPKPR
>NC_013949.1|WP_013022834.1|545615_546545_+|energy-transducer-TonB
MKVKDNQRFFYAFLLSLLLHALIIALVMLINHYQPAPPRLQKVKLDNLLVLKRGQSQDPTKNTKGARKPSLAAKPTAPSRPTPRPTPKPTPSPRIAAANPMPKPREVPKPQEPQKQEKPKKPEEKPKEQEKPQEKKQVDSKRKALDTYEQTPIDPKNLSFIGQNDSDDPMMNMDSGGGGGGNPSEQDDKGSDPETAQEIDDLYGEEFGDLGTAEKDFIRDNLRNIGRITQKYLQYPRVAAYFGQSGVNAVEFYLHPNGDISDLKIIRSSGLNSFDNNTLNTIQIAYKDYPRPKVKTLIRINVTYSYYGN
>NC_013949.1|WP_013022833.1|544860_545619_+|hypothetical-protein
MRKITLLLFLYLGMVYGVSIEEIQAKSDAGYNDVFLTFPSPLKQKIKLLYDEKKEIYFIQGLSSPKPFFQRFSKGALDSIMIYADGNVLYLSMKPSSNQGFSIDLALSRDKKSLRLRFAPLQSLANQSQELARKSLANKSIESLAAPKTSEIKPASMQSFSNQEVGVGTWQYNLVMIFLLLLIIAFLLAQKKIRKNRGRGSLPFVQNYPIDSKNRIISIGMKDRSYLIFEGSKGYVLLEKIKPKEKRVIQKS
>NC_013949.1|WP_013022832.1|544522_544861_+|flagellar-motor-switch-protein-FliN
MAKISGLEDNQREQELTTYLEDMIQSYEGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIVGRGEVMVYEKNLAIRLNEILDSNAIVYYLTKES
>NC_013949.1|WP_013022837.1|561484_563041_+|glycerol-3-phosphate-dehydrogenase/oxidase
MDRMQEYNKLKETSLWDVVIIGGGATGLGIALDSALRGYKTLLCEALDFAQGTSSRSTKLLHGGVRYLAQGEISLVYEALHERDRVIRNAPHLCKKQAFIIPNTSFFDACFYTFGLKIYDFIAGAFGIGKTSYLSANKARSRLRGIKEHKISSGVCYYDGQFDDARLALNLAQSAAREGACVLNYARVESLLKNQDGEIEGVGIRLQDTQEILEVHSRCVINASGVFGDGINAMDHARGNSIAPSQGIHLVFDKSFLPGNDALMIPKTPDGRVLFAIPWYDKVVVGTTDTLVNDICYEPSALDEEIAFILNTFGEYATKTPGRDDVLSVFAGLRPLVKQDQSASTKDISRKHKISLSPSKLITINGGKWTTYRRMAQDCLDFIIKHQLLPKSPCKTQDYKIYGYKEDGDPADRLHMYGDKAEEIYRLEEQDPRLKKPIHKDYSYTFAQIFWALEHEMAQHLDDVLARRIRLLFLDARAARACAKDVAHFMAEHLAWSQSRLESEIESFMKLSERYYLK
>NC_013949.1|WP_013022838.1|563050_564538_+|glycerol-kinase-GlpK
MKRYIMAIDQGTTSSRTIIFDKMGNVISSAQKTISQIFPQSGWVEHDAKEIWASQISTLTGALAKANISASEIAAIGITNQRESTVIWDRESGEPIANAIVWQDRRTADYCESLKEKYAKSIHQKTGLIIDAYFSATKIKWLLDNIPNARKKAENGQLCFGTIDTWLIYNFTGGKVHVTDPSNASRTMLYNIHTLQWDDELLELFDIPKKLLPEVRSSSEIYGHTMTRWVDSQIPIAGVAGDQQSALFGQMCIEKGAMKNTYGTGCFLLMNTGDKPVMSQNNLLTTVAWQIQDRVSYALEGGVFVGGAAIQWLRDGARMIRTAADINTLAATVEDNGGVYFVPALTGLGAPYWDQYARGTFFGISRGTTDGHIARAVLEGIAFEVYDIVKEMEKDLGEKCIELRVDGGASASDYLMQIQADIFGFNIVRPKTIETTALGAAYLAGLAVGFYKDIEEIKSQWHIDKTFSPKLEKERVQEMLHFWHKAVSSSLHWLS
>NC_013949.1|WP_013022839.1|564548_565280_+|aquaporin-family-protein
MSIFVSEFIGTGLMILLGNGVVATCVLKGTKCGDGGHWLIITTAWAFAVFVGVVVAGESSGAHLNPAVTLALALAHKLEWQLVPSYIAGEFLGAMFGALLVWIMYKQHFALTSDEGAKRACFCTSPAIRNYPSNFLSEAIGTFVLIFVILHLSGANIILGTDSTASIGLGSLGALPVAILVWVIGLSLGATTGYAINPARDLGPRIVLFLLPLKISADWGYAWIPICAPIVGGVVAVYLSNIL
>NC_013949.1|WP_013022840.1|565660_568360_-|outer-membrane-protein
MRRYLFPFIFGGLPLMAYNPKDGYFVEGGITTGMVETAETIIPPRSLLPSVPIPKRPPIKRISGTTPLIQSTQYSTQPIFTQDKLGSSTNQNPTPIILSAAHPIAIKLENGNVVIQNFLPYNLTNVDITMNTPGNKDRVIVGRIADLKPFEITTIPQTHMPEIAKVLAEYQQQEQQQQKQQQNRTLSGAQLAAAQNIQQSYIDKNNPNIDTRFLVDASSSSNAQTKHVLGIFERIWVDITAKFAPITPIPDLLKPNNGSWAWGVPTPYSAKLITYALENLAAVLSSPQFKQAVLHAPFAFVNGPGDYNPNVVPLSNGQAKPGSQKYVLSPETVYKQYTTSKNITVDIMSPSGYEGLGSPAVWGVQPGLINYYFKPDKSSKEKPPIYLSNDPLTPGTNIWPLITIWHEWGHVNGYSHNGDMTYQNGWFNNTDQAKPNNDAGAASAWDRFDKNPGDASGLPFVTNKNGTYFLAGMGGLGVGVWTYLGAHNELPINYKDLPAAEPNNRPNWSFNAPAWWTNPIVKPVAPIEPLAPPKESNGTENAENKKMYDAAMAQYQKNMKQYETDEANFKKRWDAYLKGLEDVQKNGTNFDSPVWYEAWAKQQAIKNKEELEKFYNEALKKAEQAVINQYNSYAGVTHITSLPANSTSAKQVAAASLNSATGAAQLAQLPQSNASNESGSGPGGGASAAQVPQSTPAQSATSEVSFRRLPREMSSYSSTFLSGLSSTLNSMSRVSNKSAMVGFNVMGGYQHYFNDTVGMSYYGIMKYNYAGVNKISASINQVGLGVGSNVLIDFYTKYTTIKEKDALEAIRRFDSSLGMFAGLRALWQGYGMLGRFVNAGNLNFTTGFNYRVGHSKYSLGISVPMISYDIKVATLGNREISIKEGPSHFNVFFNYGWVF
>NC_013949.1|WP_013022841.1|568532_569159_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQAREILQISKIIPVITIHDAKTSIDLARALVHGGIKILEITLRTKEALEAIKILSREVPEATVGAGTVLNAKMLEEVKHAGAKFAISPGLTPTFAKEAKNINLTLIPGVSTASELMLALEFGYKDLKFFPAEAAGGVGMLKSLAAPFHEVKFCPTGGISPDNINDYLHLENVLCVGGSWLSPKELILAKKWDEISQITRDSLAKITK
>NC_013949.1|WP_013022842.1|569168_570971_-|phosphogluconate-dehydratase
MKNKKLEQITQKVMERSQKTREAYLERIAGHKGKIQRKDLGCANLAHAYATIPSHIKDKIKENKDLNYAIISAYNDMLSAHQPFKNYPDLIKKEIFNHHAFAQFAGGTPAMCDGITQGYEGMELSLFSRDVIAMSVAIALSHNVFDGAFYLGVCDKIVPGLLIGALSFGHLPSIFVPSGPMASGISNDEKSKMRQLFAQGQISRDKLLESEMKSYHDVGTCTFYGTANSNQMMMEFMGLHLPNSAFIHPNTPLREALVKEAAAHMATSQIKPIGELLGEKNIINAMIGLMATGGSTNHTIHLIAIARAAGIIINWDDFDAISSIIPLLARVYPNGRADVNQFEASGGIAFIIHQLLKEGLLHDDVDTVMGQGMQPYTKNPFLIDGKLTYKDGVKTSKNTEILRDIENPFSKDGGVKILRGNIGRAVIKISAVKEEHQIIKAPALIFHSQQEFLQRFQNKELERDFIAVLPYQGPRANGMPELHKLTPPLGALQDQGFKVALITDGRMSGASGKVPAAIHMSPEALLGGSIAKIKEGDMIVLDAKNGVLEVLVDEKEWNQREAAIFTQKEIFGSGRELFAGFRAQSSSAETGAMSFGGYFQ
>NC_013949.1|WP_049762223.1|571148_572498_+|glucose-6-phosphate-dehydrogenase
MRKIFPSLYGAYSKGLLSPKGRIIATGRSVLDLGQFLGELEKKSKIHIKNCDEKKWAEFTQNISYVSINLNKLADFKILKNSLDQRCDNRVIYFSISPQYFIKACEHLAQIGFNEKNVKIVLEKPLGMDLKSCQEINDAIAKYYKEEQIYRIDHYLGKEVIQNLLVLRACNPLFLSVWDREHIDCVEITIFEALGVEARGEFYDNTGALRDMLQNHILQILSLIAMKIPKVLDAPSIREAKLELLKKLKPFKKEEIKKQVIRAQYGKSAGFKAYLEEENIREHSQAETFVAIKAQIEDPMWLGVPFYLRTGKRMAESFGQIVISFKNKNLQGYTNKLIIFLQPDNHISLNLKTKKIGNSMDVEEKTLDLHLDDSAAMQPYEKLILDVIEGNQASFNHREELEAAWRWIDPILENWKNNESELYLYPAGSWGPKEALDLVYECSHEWHNC
>NC_013949.1|WP_013022844.1|572704_573385_+|6-phosphogluconolactonase
MAFRFYEFSNSQECNLSLVSWLGEFLTEKALLNGGASLAVSGGKSPVALFELLSREKIAWDKICISLVDERIVSLESEDSNTALVKSHLLQNSAKGASFIPILKDPSLSLELLLEFANKHYRQADLAILGMGLDGHTASLFPEASEFEHALESEQNIISTTPKNAPYQRLSMSLKALKKTKKLILTLKGEDKKKVFEEASLGVNPKLPISYILHSREVDCDVYYSK
>NC_013949.1|WP_013022845.1|573365_574370_+|glucokinase
MSITQNKGKELYPRLLADIGGTNARFALELSKSKIEHIEVLACNDYNTIVDAVKAYLSKVGNPVVNYGAFAIANPVVGDWVQMTNHHWAFSIETTRQALDLEVLILINDFTAQAHAISRMPLSELVQIGGNSCAIHAPKAVLGPGTGLGVSGLIPCLDSYIALAGEGGHTTFAPFDDTEVMIWQYAKKKFGHVSVERFLSGSGLCLIYEALSHREGMKNSKMTPELISEQALSGKFPLSRLTLDIFCAMLGTVASDLALTLGARGGVYLCGGIIPKIIEYFKNSPFRTRFENKGRFDAYLAAIPVYVVLAKYPGIHGVAVALENYLKDYFKNKG
>NC_013949.1|WP_013022846.1|574373_576017_+|glucose-6-phosphate-isomerase
MKTFTHLNAWKALNSHFSQIKEVHMRQLFKEDENRGPRYFLQVGDLKLDYSKNRITDETLALLFDLANECSLKEKIHAMFEGEKINNTENRAVLHTALRNQANHSVKLDDMDIMPNIREVLIKMQNFSDSLRTGSWLGYTNQIITDVVNIGIGGSDLGVLMVCKALKNHAHPRLNMHFVSNVDGVQLQDVLSKVHPETTLFIVASKTFSTQETLTNAFTARKWFLDHALDVKHIAKHFVAVSTNKEAVREFGIDLENMFEFWNWVGGRYSLWSAIGLAIMIYLGKENFSSLLEGAHLMDEHFRNAPFEQNMPVLMALIGIWYINFFDSGSHIIAPYDSVLRYFPKFIQQLDMESNGKQVRRDGKRVDYDTGPIIWGDMGINAQHAFFQLLHQGTHLSPIDLIASLSSRGNLPGHHEILLSNVFAQAEAFMRGRNLEEVQKEMAQKGLKEEQIQKLAPHRVFSGNRPSNVLLLDEIHPRSIGSLIALYEHKIFVQGVIWDINSFDQWGVELGKELAHTILSELKGGKTQEHDSSTKHLIQIYKKFNSI

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Crispr_ID: NC_013949_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_3

893577-893692

Orphan

Consensus_repeat	Method
CTATTTTGCGCAGCCTGGGAGGGATTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013949_3

>merge|NC_013949|3|893577-893692|CRISPRCasFinder
CTATTTTGCGCAGCCTGGGAGGGATTTTGATTGGGTTGTAAGGAAGGAGTAGCCTTGAAATCTGTGGAGTTTGCTCTCTGCTCTTGTCTATTTTGCGCAGCCTGGGAGGGATTTTG

>NC_013949|3|3|893577-893692|CRISPRCasFinder
CTATTTTGCGCAGCCTGGGAGGGATTTTG	ATTGGGTTGTAAGGAAGGAGTAGCCTTGAAATCTGTGGAGTTTGCTCTCTGCTCTTGT
CTATTTTGCGCAGCCTGGGAGGGATTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_013023114.1\|903928_904762_+\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013023111.1\|898361_900731_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236266
NC_013949.1\|WP_049762192.1\|904932_905484_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|376734
NC_013949.1\|WP_013023100.1\|882895_885955_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|226220
NC_013949.1\|WP_013023099.1\|881838_882894_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|273386
NC_013949.1\|WP_158303469.1\|880585_881842_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_013949.1\|WP_013023101.1\|885957_886230_+\|DUF3240-family-protein	unknown	unknown	gnl\|CDD\|338041
NC_013949.1\|WP_013023112.1\|900795_901428_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NC_013949.1\|WP_013023109.1\|895784_896957_+\|tetrahydrodipicolinate-N-succinyltransferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|339376
NC_013949.1\|WP_041913132.1\|886557_887568_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NC_013949.1\|WP_041913324.1\|894452_895625_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NC_013949.1\|WP_013023104.1\|888653_891128_+\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NC_013949.1\|WP_145980435.1\|886247_886433_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013023097.1\|878276_880343_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_013949.1\|WP_111713533.1\|891406_892861_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NC_013949.1\|WP_049762231.1\|897004_898093_+\|SEL1-like-repeat-protein	unknown	unknown	gnl\|CDD\|223861
NC_013949.1\|WP_013023103.1\|887618_888632_+\|agmatine-deiminase-family-protein	unknown	unknown	gnl\|CDD\|377332
NC_013949.1\|WP_013023113.1\|901854_903657_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NC_013949.1\|WP_013023115.1\|905493_906333_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235621
NC_013949.1\|WP_049762230.1\|893884_894430_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_013023111.1\|898361_900731_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236266	PRK08447, PRK08447, ribonucleoside-diphosphate reductase subunit alpha.	0
NC_013949.1\|WP_049762192.1\|904932_905484_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|376734	pfam02120, Flg_hook, Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.	7.72812e-12
NC_013949.1\|WP_013023100.1\|882895_885955_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NC_013949.1\|WP_013023099.1\|881838_882894_+\|sodium:proton-antiporter	gnl\|CDD\|273386	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters). [Transport and binding proteins, Other].	3.30437e-17
NC_013949.1\|WP_158303469.1\|880585_881842_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.33643e-13
NC_013949.1\|WP_013023101.1\|885957_886230_+\|DUF3240-family-protein	gnl\|CDD\|338041	pfam11582, DUF3240, Protein of unknown function (DUF3240). This family of proteins with unknown function appears to be restricted to Proteobacteria.	0.000691596
NC_013949.1\|WP_013023112.1\|900795_901428_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	2.8745e-54
NC_013949.1\|WP_041913132.1\|886557_887568_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	1.24033e-149
NC_013949.1\|WP_041913324.1\|894452_895625_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.20527e-31
NC_013949.1\|WP_013023109.1\|895784_896957_+\|tetrahydrodipicolinate-N-succinyltransferase-N-terminal-domain-containing-protein	gnl\|CDD\|339376	pfam14790, THDPS_N, Tetrahydrodipicolinate N-succinyltransferase N-terminal. This is the N-terminal domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.	3.12602e-83
NC_013949.1\|WP_013023104.1\|888653_891128_+\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NC_013949.1\|WP_013023097.1\|878276_880343_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_013949.1\|WP_111713533.1\|891406_892861_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	3.78703e-133
NC_013949.1\|WP_049762231.1\|897004_898093_+\|SEL1-like-repeat-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	5.22737e-38
NC_013949.1\|WP_013023103.1\|887618_888632_+\|agmatine-deiminase-family-protein	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	5.29039e-150
NC_013949.1\|WP_013023113.1\|901854_903657_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NC_013949.1\|WP_013023115.1\|905493_906333_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235621	PRK05842, flgD, flagellar hook assembly protein FlgD.	3.50172e-162
NC_013949.1\|WP_049762230.1\|893884_894430_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	2.70605e-72

>NC_013949.1|WP_111713533.1|891406_892861_+|DASS-family-sodium-coupled-anion-symporter
MSKYWRFIAPILVGGGVLLVPAPESLSFDAWLYFAIFLSVVVGLVLEPLPGALIGLFGVCVLVWLKLGPSSSAGLQITAASAIKWGLSGFANVTVWLIFAAFMLGLGYEKSGLGKRIALLLVRTLGRTSLGLGYAIAIADGILAPFIPSNSARSGGTLYPIVSSIPPMLDSFPDRGARKVGAYLVWVSLAATCVTSSMFFTGLAPNLLAMETAIKGGFPGISWVGWFVAFAPCGILLFVLTPLLTYWIYPPQIKVSNEAPKWAAEELRKIGPMSVKEYLMIVLALFALVFWIGGKAFGVNATTVALSVVLGMLLCGIITWNDLLGNKSAWNVLAWFGSLVTLAGGLNNVGFLKWVAGFGGEYLKDFDPMVAFVGILVLFYLLHYFFASTTAHVTALLGLFMAVGANIPGIDAAELTLLMMLSLGIMGIITPYGTGPSPVWYGSGYVKSAEFWRLGLIFGMFYLVVFMVICVPWVHLYAHRFLSQ
>NC_013949.1|WP_013023104.1|888653_891128_+|carbamoyltransferase-HypF
MAFRIFVFGRVQGVGFRPHVYKLATKLQLKGYVRNEGSYVEILIDRDLERFLEILQSSLPKSARITKILTEPADELSSTPIAAGGVAGLFGDFVKDTAKAESEVATAPINHPRNQSLQEGQNSGDFSILDSRAQNFSLSSPPPQDLALCKSCKKDLFSHQRFSHYALTTCSDCGPRYSILQALPYDREHTSMRDFPLCEDCARDFKDPKNRRFHAQTLSCKQCPIPLQFFAKDITASNTQALAICRESLRSGKILAIKGVGGFALICDARNQKSIASLRERKTRPHKPFALMAKDLAMAKNLAFVDEDEENSLSSKEAPIVLLKKKENPLLSKENLDLIAPGLAHIGIILPYSALHVLLLEGLDFPIIFTSANKSGEPIIHDYETLCQKLGNVVDGVLDYGREIKNPIEDSLVQKIAGKMRILRLARGFAPLHVSIPQLEENSQLLKNSQLRENSQPDSQAESSKSQKNPQVLLGMGAEQKVTVSYREHGEFLISPTIGDLDNPESLRSYEHTLAFLQKLYQLRPTKIISDKHPSYHSYEISANYSAKTSISWEQKLHHLAHFHAIFGDAMLQNPTLLPQEEVLGVIWDGTGLGENLEIWGGEFFLGNLEQSRRWAHFQATAIYGGERAAKEIYKIAYSFAKAYATPKQIAGLKESYAQKYAYFEIFDSSIDRGIYGFFSTSVGRMFDALAALCEICEHNSYNAQAPLWLEALYQREFYGIYAVKIEGGIIDVGGIFAGIFQDLDRGVQRAVIATKFIDTLIEIIFQLAQKSHVKHVLFSGGVFMNKALCEGIVRRFVDSGILLYFHLYLPSNDANISFGQVMC
>NC_013949.1|WP_013023103.1|887618_888632_+|agmatine-deiminase-family-protein
MRRLRAEWECQSAILMAFPHAKSDWKIYLKEARETFLQIMEAILPHQKLLLCIHPSDREGEELVRDRLRDFLRDGKLLIAHIPTNDTWARDFGPISIEEDGRTLTLDFGFNGWGLKFPSNLDNQISSRLKDLGFLQNCITQDLILEGGSIDSDGEGVLLTNTQCLLEKNRNPSYTKEMLDQRLKKDLGLTQIHWLNHGYLAGDDTDSHIDTLARFLNPNTIAYVHCEDAEDEHFLELQKMRQELGALRTKEGLPYKLIPLPLPNIEYDGERLPASYANFLLINDRKLLLPTYGVPELDALAIQALSPYYDVLPMDCSILIRQHGSLHCVTMQLYEDL
>NC_013949.1|WP_041913132.1|886557_887568_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MILSIESSCDDSSIGITSIEDCELLWHKKISQESIHNLYGGVVPEIASRMHADNLPKLLKDALAAIPKESFKAIAITTEPGLSVTLIEGLMMAKVLSLELKIPLISINHLKGHIFSLFINQKSLIFPLSVLLVSGGHTQIIEARGMEEMEIIASTKDDSFGESFDKVAKMLGLSYPGGPIIQENAREYEGELYDFPIPLRNHPGIGFSFSGLKNATRLQIEKEAYPYSKNSIQKIAKSFQAAACKHLLQQLERYFKGSQIQDFAIVGGASANLFLRELVEKLCLKYQKTLHLVPLKFCSDNAAMIGRAAVEKFKRGQFASLAHLQCSPKSSADEFL
>NC_013949.1|WP_145980435.1|886247_886433_-|hypothetical-protein
MLAPNLCHTPKTTKTALTNNENKKIANQKILQQFIGIKTHSHPSSCSGAMIQNYSQNHHKH
>NC_013949.1|WP_013023101.1|885957_886230_+|DUF3240-family-protein
MLEIYVEAELKNKVVDLFLEKGLDNFFCLNVQRYAAKNLLVSQMEQVSGRKEYVMFKVFAKKKQKREILLWLEEFDHARYFVSKKKEKEK
>NC_013949.1|WP_013023100.1|882895_885955_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MLAKIIEFSLRQRIMVILCALGLLVYGCYSFLTIPIDAFPDISSTQVKLVIKAPGMAPEEVENRVIRPLEFELLGLQGEKSLRSVSKYAIADITLDFEDDVDIYRARTMVNERIVGILEDLPHGVSVTMGPIVSPLSDMFMFTIDGEISEIKKREIMDFTIRPALRSIRGVADVNSLGGYAKAIAIVPNFNDMARLGISISELERVLKENLKNDGAGKIDRSGETFLVKIQTASLDMESIKNIAIPTKNSYLRLGDFCNVIPSYRTRLGFLTKDGKGEAVGGLVLSIKGSNSKETIQRIYKKFEELKHILPRDIHLNVYYDRSELTQKAVDTVSKTLIEAIILIMITLFLFLGDLRAAVAVSITLPLALGFAFIMMKKYGITANLMSLGGLAIAIGILVDSAVVMVENAFEKLSTNKTLTKLHLIYRACGEIAVSVASGILIIIIFFAPILTLEGLEGKMFRPLAQSIVFALMGSLILSMTVIPVVSSLILKSKEHQETLLVRILHRIYDPTLNFCLKHSKIVFISAFAFLVMSFSLFPYIGKSFMPTLDEGDLVITVETSPSISIDQSKDLILRIERQLLQIKEVKSAVGRTGSDELGLDLSGFNQTDIFVSFIPKKQWSMKTKEELIDKVRKSLENFRGISFTYTQPIDMRVSEMLTGVRGDLAVKVFGNDINELNNLSAQIQKIIEGVRGSDEVFTALNKGVNYLYVIPNKRVMASVGITTEEFSTFLKSSLEGIVVDYIPQGSARIPVLIRQNSEIAKDITMFKSLTMSSEKDLSVPISSIAQIKEVDGPVMIYRENAERYGVIRSNVKNRDLDGFVKEVQSKIHKEVKLPSGYYITYGGQFENQQRANARLLTVIPLSILVIFFILFFTFRDIPSSLLILLNIPFAITGGLISLFLSGQYISVPASVGFITLFGIAVLNGLVMVGYFKELMAQGYSVDEAVERGARRRLRPVLMTACIAALGLIPMLLSDGVGSEVQKPLAVVVLGGLVTSSMLTLLILPPMFRSVTKKFQHKR
>NC_013949.1|WP_013023099.1|881838_882894_+|sodium:proton-antiporter
MKKLLSWMGFFCFLYAFEEIKISPQAISKLGIKTVVVGKGVSTKGVPFNAQVDFDTKTSITQSTTFDVIVVALHKQEGEYVKKGEVICEISSNELSNLFFQFENAKNRYNIAQEVAQKDKKLFESGVISQREYQVSYLNANELHLKVMQLQGTFDTFGIDEKNPKGDFGFRVIAKESGILAVSPKRIGEKIFAFSPYIRITDGLGLIAYIRVPIHMANYVKAGAKVFNKSGVNIGVIKTVSIVVDRSTNTVLATAPLDHTNYKVGEIIRLYVDIDFHQNSVVVPFDAVIKNGNDYLVFKKIPGGFLPIKVDILEEKNGVFIVNAGSAIKNGDEIAMGAIIALKGIMDNIGD
>NC_013949.1|WP_158303469.1|880585_881842_+|TolC-family-protein
MKKIFFFWLFLGGLAFFGGLAAYDLDYDQFVQRIEQNSIELIQNKGQFSANLHDYRAGMSWKNSFIETEIGLGKASAGKVNIESNTLVILTPRLPWVVAILNQSLQTKTIQYAKTYELRKRLAIIGAKRIYFSYVLAKEKYKIYQQREQNFYSQLKIIEKKFEAGSASKKDYVNFKNSYYDARLARIDIEKELENIKSILYKILGLRVTGDFLETQDINVAGLDFAYLKLQKIRLKEYISQSPYVEIIALSAKDHGINARASSMERWDNFEIGFGIESNALGNQTENFGSMRLNVPLPLTRRYDFLKKKYLALQSAALRENEVTRNNISVRATSLFTQLQTKREFIELQQENIKNKKSLVDMGKTAYESQRISSFEYLAYQNAYMDSLIKMIDAKMDYIQTQALLEETLGRVLQKGEI
>NC_013949.1|WP_013023097.1|878276_880343_+|glycine--tRNA-ligase-subunit-beta
MVSELFIEIFVEELPALPFLREFKNFATKWQEALQRHSIPPIQTQFFYTPRRIVLFCEQFPIRTQEEKKEIFGPPVDVAFEKGDKNAPLTAAGEAFLKKNHLQIEQLCYAQKGGKEVLFSLQVQEGVSLTEILPQILKSFLQSLHFGKHMRWGNVTEDFIRPIRNIMIFLGEEFVPFVGYGIEARPQTKLHRDFGLDWQEVKNFADYCKKLNEGGVILDQEERREKILSSIISLEKSQNIAVEVDGELLDEVVAITEYPQVILGHFEERFLELPKEVIITSMKENQRYFAVYQDKSLQHLKNHFVMVSNSTSKDEGIIVLGNQKVLRARLEDAMFFYHNDCKKGLSNAGLEKLLFIEGAGSMQDKVKREQKIAEFLIQRFDCQELSAKKAQILECIELSKADLLSEMVYEFSNLQGVMGYYYALVIKKDPSIALGIKEQYLPLGEHSALPSTPFSAIVALAHKFDNILTLFSVGKIPTGSKDPFALRRAANGILRIILQESFDFDLEQDLAKMLRILDLDLSQTQKIATFFIERMDGLLQQNRALLKSVLATNEENICRIFDKAHALGEIFTGDGIEQGELVATFKRVANILKSKIPLGEISQELLIEEAEQTLYHDFLQVCAKNESGDYLIRLKNLCGLKGSLDDFFDKVMVNVENPALKQNRIQLIAHIYEEFLQIADIKEIHLTK
>NC_013949.1|WP_049762230.1|893884_894430_+|phosphoribosylglycinamide-formyltransferase
MQNLIEKLHQKTFFLQNKQVRLEILAGICNQKDAYGIKRLEAMGIPCTLLLHQDFASRQDFDDALMSHLEHLGVDLVLLAGFMRILTPKFCQSFRILNLHPSLLPKFKGAHGMRQSFESEERVAGVSVHWVNEELDGGEIVLQKSLVKIPGERFEDFEERIHALEYEAYPEAVLLALHAII
>NC_013949.1|WP_041913324.1|894452_895625_+|cation:proton-antiporter
MFHHLITFSLISISIGVAPFLSKITHIPIVVVEMLLGTLGVYYGIFESSDAVDIFAKIGFLFLMFLCGMEVNLRDFRQLGKSFLKYTIFYFVLLYAGAFLLVLFFGLPSIFVAALPVMSLGMIMALIREYGKEEAWLSIALKTGIVGELLSIGALVFINGIYSHGFTFELYKILLVLFGFVAIISGMFMLVKILFWWFPNFKTFIMPHHDDTQNQDIRFSMMLFFVLIVVVMWLSLENVLGAFLAGMIIVTFFPYKHELIHKLNDIGFGFFIPLFFINVGMTLKLEMIFHNPKLLYDGFLIALAMLFLRLVATKIAFYKYFPQMRDVLLYALGHAMPLTFLVATAALGLKLGAMNEDTYYAFLLAAIFEGVVFSIFIKVIFLFWKKKNQH
>NC_013949.1|WP_013023109.1|895784_896957_+|tetrahydrodipicolinate-N-succinyltransferase-N-terminal-domain-containing-protein
METFKKFVEKHQARECLGFGVARVDLGKRGNVLCATYPVLNWKENFGSYAVFDACKKSATLVSQSQDEAIYSLNLACINEALEIFAPFLPEALRDPESHRNIQVLLELKKILSLPKQNQVDYRLVFLYADAPCKSVESAYMKLLALSLGKAPLRSLHLDGIFGLLSNVAWSGNKPYELEDLRQNEIAWKLSGTYPHIDFVDKFPRYLMQVIPQYDNIRILDSAKTRFGAYLGKGGYTQMPGASYVNFNAGVEGACMNEGRISSSVIIGEGSDVGGGASILGVLSGGNSEPISIGRNCLLGVNSSTGISLGDGCIVDGGIAVLSGTVFEIQEQEAQKIQALNPSFLIHENGLYKGRELSGLHGLHFRQDSKSGKMVAFKSNQEITLNKDLH
>NC_013949.1|WP_049762231.1|897004_898093_+|SEL1-like-repeat-protein
MKKVLIALVLIFGFCLAEDLPSNQGMGVQDTPKPPTIAPNPKPDQRKIPLDNPPKGNPLSTPKSAKTFLDFGLDAAKKGDYKSAFRFFTQACDNGNPAGCFAIGTMYMNGVGIQTNIQKAERYYQMGCSGGDPTACSSLAKIYDYKEQASANDKEKAAQLYMTACQGGDIMACNNIAYMYANGDGVPKDYFKALQYYKFSCDAGSDLGCYNLGLMSNTNNVYGYDRANLTIVDLNYIACNAGDITGCANLGWIYANGLGGAPVSYYYAAHYFNIACNSGNLSGCNNLGVLYQKGLGVTQDTNRALDLFGYTCNLGYQMGCDNYRIFKQQLTGNRTNPGSFFFPNDPKLGKLPNIGRTPPPPR
>NC_013949.1|WP_013023111.1|898361_900731_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MITVVKRSGRIEPLDISKIHKYTSSAVKDLKDVSHSELEVDSKFYFRDNITTEEIQQTLIKTAVNKIDMDRPNWTFVAARLFLYDLYHKVSGFTGYRSLREYFEKGEQEGKIVKGLKEKFDLDFLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMFMAIAMFLAQNEKDPNAYALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIEGIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQLGTRKGAIATYLEIWHTDVQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTLFDPYQCGILTELYGEEFEEKYLEFEKRQDIIKEHIHAKELWKKILTNYFETGMPFLCFKDNANKANPNPHTGIIRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDAGIEKKANKITSLDCIGGKKVYITSRVHKDGNTAVCNLASINLSRIHTKEDIDRIVPIAIRMLDNVIELNFYPNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDMIMEAISYNAILASSNLALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVDRGGLFDREYNWNFLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPNLNLETFPYYTRAYDLDQKQIIKAAAIRQKWMDQGQSTNTFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSESPEAREEIADRSMECENCQ
>NC_013949.1|WP_013023112.1|900795_901428_-|NAD(P)H-dependent-oxidoreductase
MKNAFLDAMRARFACKSFDPTKEISLQDFEEILEAGRLTPSSFGLEPTRILVIENKALRKEMQSLCWNQTQITDSSKLVVLTSKVLDMDHRSNYVNRMISRKIQDPEALVAYSKRYGTFLANNDYKEAQSIYHWTSKQAYLIASSMMNCASFLHIDSCPIEGFEKKPLEKLLGLDPFSEQISLLIAFGYHAKKPEKRAPRLSKHEFVKYL
>NC_013949.1|WP_013023113.1|901854_903657_-|translational-GTPase-TypA
MQQIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKLNERVMDNNDLERERGITILSKNTAIHYKGTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLFVAMGANDAQLDFPVIYAAARDGYAIKNLDDEKKDLAPLFDAILEHVPMPSGNSDSPLQMQIFTLDYDNYVGKIGIARVFNGKVKKNENVLLAKGDGTKESGRITKLIGFLGLARMEIEEAKAGDIIAIAGFNAIDVGDSIVDPNNPMPLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKIKDRLLKEMQTNIAMRCEEMGEGKFRVSGRGELQITILAENLRREGFEFSISRPEVIIKEENGARLEPFEHLVIDTPQDFSGTIIERLGRRKAEMKAMNPMGEGYTRLEFEIPARGLIGYRSEFLTDTKGEGIMNHSFLEFRPYSGSVESRKNGALVSMENGEATSFSLFNMQERGVLFITPQTKVYVGMVIGEHSRDNDLDVNPVKTKNLTNMRASGSDEAIKLVPPRELTLERALEWIEDDEILEITPQNLRIRKKYLDPNERKRMARK
>NC_013949.1|WP_013023114.1|903928_904762_+|hypothetical-protein
MLDSVINSSTAIESNAPSAPTKKGKIEAQVKDEQESFAKMIEKKASEAKNTSDVQSNLAQGVAHQALKEASGAFHQKELGQTSKDAPAKMDMPAKNLTPTKQDAPKLSDLKTLAEQKNLNPQKLSLEKEQPQKAEPKKIVASKTHKEPSKDVSTENTKVQKMSTQELLEQKKQNPIKSQKPVGEPLAQALREINTKDLALRKKQNQENKMEYKQEGGEKIAVIQRGHHLPKNIAEPRLREEKKELELQKVLDKFGVVHDNGVEEDAGVEAKKKTLNS
>NC_013949.1|WP_049762192.1|904932_905484_+|flagellar-hook-length-control-protein-FliK
MKKNEENPQRESKEGGDSQGIEEKKESAKPANALLNHQITKSESQAGALRATLSSFAQQIKEAIKNYKPPLTKLEIELNPKDLGKVELSISKKGKDLQISISSNIQAINLFAQNQVDLRQHLQNIGFQNIDLNFSHGGGDLGGGSSQDEGGKQKRNENGLQAYKEIEDSVQYDHLEIVLPKYA
>NC_013949.1|WP_013023115.1|905493_906333_+|flagellar-hook-assembly-protein-FlgD
MPIDLAEITGAKAAQEAKKAQGPKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEVASAMQSTKESNEALKTFQSDLKNTLEKLDKGMEQSIDSNAYLAQVSALNAVSMIGKIVETDVNGIHVKGDGDVDFALYFDNPIHEDQGNPTIQIFDKDKNLIATLPIEGKEGQSGYISFKWNGLDDKGVRVKEGSYDIRAEYNLNSHTNQYQQSRVGRGEVDSVVFDKGKPMIKMGAMVLPMDSAIEFYDKEKGDEQHNS

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Crispr_ID: NC_013949_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_4

919307-919437

Orphan

Consensus_repeat	Method
TTTTCTCCTCCTGTGTGTTTGGAGTGCTAGCTGGGGTGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013949_4

>merge|NC_013949|4|919307-919437|CRISPRCasFinder
TTTTCTCCTCCTGTGTGTTTGGAGTGCTAGCTGGGGTGGTGGGTGTTATGGGTGCAGCCTGGGTATTTTGCTCTAGATTTTGTGCTTTTGTTTTCTCCTCCTGTGTGTTTGGAGTGCTAGCTGGGGTGGTG

>NC_013949|4|4|919307-919437|CRISPRCasFinder
TTTTCTCCTCCTGTGTGTTTGGAGTGCTAGCTGGGGTGGTG	GGTGTTATGGGTGCAGCCTGGGTATTTTGCTCTAGATTTTGTGCTTTTG
TTTTCTCCTCCTGTGTGTTTGGAGTGCTAGCTGGGGTGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_081441290.1\|916297_916807_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183381
NC_013949.1\|WP_041913133.1\|908364_910317_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NC_013949.1\|WP_049762194.1\|916992_917514_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_013949.1\|WP_013023121.1\|913865_915791_+\|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225324
NC_013949.1\|WP_013023132.1\|931572_932025_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
NC_013949.1\|WP_013023115.1\|905493_906333_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235621
NC_013949.1\|WP_041913136.1\|924989_927413_-\|pyruvate,-water-dikinase	unknown	unknown	gnl\|CDD\|235809
NC_013949.1\|WP_041913332.1\|927616_929815_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_013949.1\|WP_041913135.1\|913198_913393_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_013949.1\|WP_173051823.1\|923347_924112_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_013949.1\|WP_013023130.1\|929836_930868_+\|lipid-A-deacylase-LpxR-family-protein	unknown	unknown	gnl\|CDD\|378338
NC_013949.1\|WP_013023123.1\|920297_921395_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NC_013949.1\|WP_013023118.1\|910845_912657_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NC_013949.1\|WP_013023120.1\|913475_913841_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_013949.1\|WP_013023131.1\|930867_931341_+\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013023127.1\|924468_924960_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NC_013949.1\|WP_013023124.1\|921401_922196_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_013949.1\|WP_013023125.1\|922235_923180_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|181414
NC_013949.1\|WP_013023119.1\|912653_913211_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_013949.1\|WP_013023116.1\|906313_908116_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235620

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_081441290.1\|916297_916807_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|183381	PRK11917, PRK11917, bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed.	3.6811e-56
NC_013949.1\|WP_041913133.1\|908364_910317_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NC_013949.1\|WP_049762194.1\|916992_917514_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.5633e-52
NC_013949.1\|WP_013023121.1\|913865_915791_+\|motility-associated-factor-glycosyltransferase-family-protein	gnl\|CDD\|225324	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown].	2.99451e-52
NC_013949.1\|WP_013023115.1\|905493_906333_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235621	PRK05842, flgD, flagellar hook assembly protein FlgD.	3.50172e-162
NC_013949.1\|WP_041913136.1\|924989_927413_-\|pyruvate,-water-dikinase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NC_013949.1\|WP_041913332.1\|927616_929815_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_013949.1\|WP_041913135.1\|913198_913393_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	9.93328e-17
NC_013949.1\|WP_173051823.1\|923347_924112_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	7.51693e-128
NC_013949.1\|WP_013023130.1\|929836_930868_+\|lipid-A-deacylase-LpxR-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	8.83349e-99
NC_013949.1\|WP_013023123.1\|920297_921395_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	4.50446e-153
NC_013949.1\|WP_013023118.1\|910845_912657_+\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_013949.1\|WP_013023120.1\|913475_913841_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	8.71981e-61
NC_013949.1\|WP_013023132.1\|931572_932025_-\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.52973e-69
NC_013949.1\|WP_013023127.1\|924468_924960_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	3.8663e-72
NC_013949.1\|WP_013023124.1\|921401_922196_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	2.49088e-39
NC_013949.1\|WP_013023125.1\|922235_923180_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|181414	PRK08410, PRK08410, D-2-hydroxyacid dehydrogenase.	1.07219e-159
NC_013949.1\|WP_013023119.1\|912653_913211_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	6.99623e-82
NC_013949.1\|WP_013023116.1\|906313_908116_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235620	PRK05841, flgE, flagellar hook protein FlgE; Validated.	0

>NC_013949.1|WP_049762194.1|916992_917514_+|amino-acid-ABC-transporter-permease
MQGPFALSRWMETFHNYPLFLSGYFYTLILSAIAIALALALGSLSGLMATSKKKPLRLASRIYVEFFQNTPLLTIIFFLYFVIPTIGVTLSPFMIGIFGVGVYHGAYMSEVVRSGIQSVPKGQFEAAQSQGFSLAQTLFYIIFPQCFRNVTPTLLSQCITTFVFCNHKKALTL
>NC_013949.1|WP_081441290.1|916297_916807_+|transporter-substrate-binding-domain-containing-protein
MQRLLLHGFPAFQSLSPYECSRKSYSSPYEAQKCDDYIGLLVLKNKNINSFKDLDNKTIGVAQGATTQKVLESAAKEAGIKIKVDNYPDYPSLKAALVAGRIDAFSVDKSILLGYVDKDSKILKDNFAKQSYDIATSKRDLEFAKYVDEFVKTHQNQINALKKKWGLSE
>NC_013949.1|WP_013023121.1|913865_915791_+|motility-associated-factor-glycosyltransferase-family-protein
MTLQEILTEGDTQKIQNLLSQRMVKNMEFFAIHSPKLFTQLKKPPTDYNLLFDKKGLNIIDLRTKSLLYPTLEGQYTMVETHGELSLSPSKNPRWKLHHNEVSLSPIDEKKFPITGEAIASFIKLLQKHQGIKEYYLDPKFMPTTLLYGLLGGLFLEFMRERGVFFHALFIFEENLDLFRISCYFLDYEALFESTNPNALYLFVQNIFDKKMIRNFFAARKITSNFLLCELQCYQSKKMQQISSFVMQEFSANKRGWGSFEDEMKGLENTLQNYSMPTLSFPKRQNIPICVVGNGPSLDALLPFIAQNQEKMLIFSCGTALKPLKNAGICVDFQIEIERIDYLSDVLRAAPLGDTTLLCGNMVSPAALHQAREAYVFLRGGSACSYLDKNSVMEFCAPFVGNAGASLAMQLGSEILLCGLDCGYIEGESKHASNSYYGKEKSQIPSHAIEVKGNANKRVFADSIFLLSLQNLADAIDFLKPRLVLNLGFGAYVEGARSIHAEGISLRPIDKQAAISQIKSYMKKNPPLDFRAKITNAYAFRDCMLELLGRGARSKKELFCLMDELLLLLSQTSRKDPHLGILFEGTLAHVAQSLLLSAMHLPHDDIFVFFAQCLEVIARIFDKMLLQYKLLLGLYANTHKT
>NC_013949.1|WP_013023120.1|913475_913841_+|50S-ribosomal-protein-L20
MRVKTGFVRRRRHKKILKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKRDFRSLWIVRINAACRMSAMSYSKFMHGLKLANVELDRKVLADMAMNDSAAFHEILSIAKEALHKAQK
>NC_013949.1|WP_041913135.1|913198_913393_+|50S-ribosomal-protein-L35
MPKMKTNRGAAKRFKAKKNLIKRGSAFRSHILTKKSPKRKANLKKPQYVHSANIDSVKNLLCQA
>NC_013949.1|WP_013023119.1|912653_913211_+|translation-initiation-factor-IF-3
MSKEEVLLNQEIHFKEVRCVGDDGEVYGIISSSEAQKIANSKGLDLVLISPNANPPVCKVMDYGKYRYQLEKKQKEARKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIAEQKHVKFKVVLKGRETSDPQGGFEVLRRIAGMVEDIATPEKEPRVEGRYVIWLFVPKKQEKNHLMKGEQTCQK
>NC_013949.1|WP_013023118.1|910845_912657_+|threonine--tRNA-ligase
MSEIIGIRIGEEIFDTQTAQEKGLRGVEILFDNSQDSLSIIRHSCAHLMAQAIKELYPDAKFFVGPVVDEGFYYDFKTAHKISQEDLAKIEKQMKEIAKRKLPIIKSTMTRQEALEKFQDDELKQAVMSKIPGDDFGVYAQGDFEDLCRGPHLPNTKFLHAFKLTKLAGAYLGGDESAEMLTRIYGIAFADKEMLNAYLHQIEEAKKRDHRKLGVEMGLFTFDEEVGAGLPIWLPNGARLRRRIEELLTKALMIRDYEPVRGPELLKSSVWKTSGHFDNYGENMYFTTIDEVEYGLKPMNCVGHIKVYQSSVRSYRELPLRFYEYGIVHRHEKSGVLHGLLRVREFTQDDAHIFCRPTQIKTEVSNIIAFTDKIMQAFGFCYEMELATRPQKSIGQDAVWEVATQALIDALQENHIHYKIDEGGGAFYGPKIDIKITDAIGRKWQCGTIQIDMNLPERFALEYIDENNTAQQPVMIHRAILGSFERFSAILTEHFGGEFPFFIAPVQVVLIPITESQHQYAQSLRKKIIALGAYAEVMNKNETLNKKIRNAEKQHVPMILVIGQKEQNSGTLAIRDRREKSQYEMKEEEFLHMVEQKMKEVSF
>NC_013949.1|WP_041913133.1|908364_910317_+|NAD-dependent-DNA-ligase-LigA
MEKEQYEKKVEQLKKMAYHYYVLDDPISSDEEYDILYHEVKGYEEAHPEAIREDSPTQRVGMPPLLEFQKNTHRKKMWSLDDVFSFEELESWCQKIYKNHPEAIFTCSPKFDGASLNLLYENGDLISATTRGDGMQGELVTQNAKTIPSIPLKIPHKGLIEIRGEVVIAKSDFEALNKKRMEEGEALFANPRNAAAGSMRQLDSSITAQRKLRFIPWGFGQHTLGIDSFKEALEQVFCFGFSPIPFVQLCKNMQEIQRYYEEIMQRREDLPMMLDGMVVMLDSFLMQEKMGFTIKSPRFACAYKFPAVEKFTKILSIINQVGRTGVITPVAELEPIEIEGARVTRATLHNYKEIQKKDIRIFDEVVVIRSGDVIPKIIRPNIARRTGEEKAIEPPTHCPICGERLLIEEIFIRCQNLQCTARVRESIVHFVSKKALNIDGLGEKIIYQLFAAGLVKNITDLYSLDYEELLRLEGFKEKKAKNLLEAIANTKNIDLWRLIHALGIEHIGEGASKKLALAFGLECFDKDYDALTRIDGFGKEMAESFLEFSQVNARLIHVLLKILTPKVQQTQNPVQNYFSAKKIVLTGSMQRSREEVAALLEGVGAKISTSVSGKVDFVIYGENPGSKLDKARELGVGILSEAEFWEKFQG
>NC_013949.1|WP_013023116.1|906313_908116_+|flagellar-hook-protein-FlgE
MNNTILNSYSGIKTHQFGLDSISNNIANVNTPGYREHIPEFKTLLSRNIASVNGSTVSSDSNYGVSVSSNAISTKSGDYKRSDGDFDMAYEGKGWFIVGKNSKGSLSINEDGYEGNQQNYFTRDGSFSRDSDGYLVNAAGYYVYGLDLGKIKGNVLTDNPNKEEEQKSLIKNKLTPLRIPQDMIYQPTQTTKVDIALNLNAKKENAPLAQYLFDENGKFLDQKLDSLDMNALFNNEKKPLDARGNNDIRITINEEGKEKKFDFKYTPNKEVGKEEFHTFSDLKKLFQSAGLSLDVARDKDGTPIKPMAFTLKNEGADMKLTLGGKFFDSLGLLLADVPLKKGESQTSGSLNIASYSTSAEIFDEKGEKFLIKTQYFLEESGDNRQKQDQIWEARSRIMDKTDHPLDDKTYTQTLEFDTDHQAHAKPIELDFQGSKIAYSLEGAGDAHSSNLGYEDSSLLKSESDGKKEGRLSGVSIDENGIIQLNFDNGVSTPMGRIGIAAFSNDQGLHKVGGNLFELKQTTDNNGDNKILSGAPILGWDGDGDGRLKFGRVMHKYLETSNTDVTSALTNLILMQRGYSMNAKALSTGDDLIKEAINLKR
>NC_013949.1|WP_013023115.1|905493_906333_+|flagellar-hook-assembly-protein-FlgD
MPIDLAEITGAKAAQEAKKAQGPKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEVASAMQSTKESNEALKTFQSDLKNTLEKLDKGMEQSIDSNAYLAQVSALNAVSMIGKIVETDVNGIHVKGDGDVDFALYFDNPIHEDQGNPTIQIFDKDKNLIATLPIEGKEGQSGYISFKWNGLDDKGVRVKEGSYDIRAEYNLNSHTNQYQQSRVGRGEVDSVVFDKGKPMIKMGAMVLPMDSAIEFYDKEKGDEQHNS
>NC_013949.1|WP_013023123.1|920297_921395_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MVLLGSTGSIGVQTLSIAKLWNLEVEVLCAGRNIPLLNEQIAIHRPKIVVIQDRNDATNLKALGARVLFGDEGILQAIADSCSKLVVNALVGLSGLAPSLEAKKQKKTLALANKESLVSGGWLLQDYPIIPVDSEHFGIWYLLSTHPRHSIQKLCITASGGAFRDTPIQDIATKKPEDALCHPNWKMGNKITIDSATMVNKLFELLEAKWLFGIENLDALIERSSIVHAIVSFKDGSSIAHFANPDMALPISYALNPIRAKQECLTPALDFCSLKAIAFEEISPLRYPIWEAREMILQNPRLGAALNSANDILVVAFLEQSICFGEISRGILSVLEHFASQTPNSLQEIFTLHQEIQIFLQCREK
>NC_013949.1|WP_013023124.1|921401_922196_-|phosphatidate-cytidylyltransferase
MNLKNAFLNEKKRYVTGIILLVIFVILVWINNVYLIWATLGLTLLAALKESLVLLGCKQSFLLFVFTSLVWISAFFNQNPMESAIFGAMLLSGILAYRQSFSPRYILAFLYPTLPFLTLFSIYKDFGIEAIVWLVIIIALCDSAAYFGGRIFGKTPLSPSSPKKTIEGLLIGTFFSVVIGSLLGIGILHQGFLVSFFISLVVALSGVLGDLFESYLKRRENLKDSGSFLPGHGGILDRFDAILFGAIAMHFLLYFSPTYETSFF
>NC_013949.1|WP_013023125.1|922235_923180_-|D-2-hydroxyacid-dehydrogenase
MKIVLLDAQTLGEVDLSLLEQWGEFLSYPITSDSELYDRIKDAQILITNKTQLRAEILQRCPNLKLIAVTATGTDIIDVECAKKLGIEVKNVADYSTKSVAQHTLTLALDLLLRTRYYDDYCKSGSWSNSSIFTHVGKGLRQMDGKEWGIIGLGSIGKEVARIAQCFGAKISYASVSKQPQKDCPYAYKDLEDLLSSSDIISIHAPLSDKSKNLLNSQNLCKIRDGSILINVGRGGIVNEADIAKELLERELYFGADVLASEPMKKDHPFLNPALHAKMILTPHIAWAYEHSRKILVQKVLENIQEFLARQAKQ
>NC_013949.1|WP_173051823.1|923347_924112_+|acetylglutamate-kinase
MVIKYGGSAQINPKLKLNFARDIVLLRLLSIKVVIVHGGGKDINQMLDRLGIPSEFANGVRITSKEAMPVVEMVLSGNINKELCDFLNAHGAKAIGISGKDGHLFCADSKDNNYTGEITKVNPELILSLLEGGFVPVVAPIAYGEGLGHLGLNVNADYVACEIAKALNASKILFLTDTKGVLDDKGALIPSINEELFLSLKEQGVITGGMIPKISSCLECVRNHVKKAHIIDGRIEHSLLLELFTSGGVGTEIV
>NC_013949.1|WP_013023127.1|924468_924960_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MREVIYLAGGCFWGLEAYMKRISGIKEVLVGYANGNREHTSYEELHESDHAETIRIVFESEELSLERLLGYYFRVIDPTSINKQGGDHGRQYRTGIYYIDSNHYPRIFSALEQLQKQHQKKIQIELEPLRNFVVAEEYHQDYLGKNPGGYCHIDITKASELLD
>NC_013949.1|WP_041913136.1|924989_927413_-|pyruvate,-water-dikinase
MKYIKFFRELNNKDVPLVGGKNASIGEMFQELVPVGIKVPNGFAITSEAYWYLLDSGGIKEKIIELLKDVDVTEIDVLKTRSKKIRELIFGTPLPADLRDEIFEAYEILSEEYGMKHADVAVRSSATAEDLPDASFAGQQDTYLSVRGQTGLIHYIKACFASLFTDRAVSYRASRGFDHFKVALSVGVQKMIRADKGSSGVMFSIDTETGFRDAVFITSSWGLGENVVGGTVNPDEFYVFKPTLQEGKRPIIKRQLGHKHVKMVYAPSGSDHPTKNIATTQKEMQTFSITDEDILTLARYAMRIEKHYSQEAGEYRPMDMEWAKDGDSGEIFIVQARPETVQSQKSKNNTQVIEKYKFKYNDEREVVIKGRATGGKIGVGKVRIINDIEHMNTFKEGEILVTDNTDPDWEPVMKKAAAVITNRGGRTCHAAIVAREIGVPAIVGAVGATDRLYTGMEVTVSCAEGEEGYVYAGIHEYEVKKIELSNLGNTKTKIYMNIGNPAKAFSFSQLPSDGVGLARMELVILNQIKAHPLALVDIQNGKTDVPDFKEIKKLISGYDNPKDFFIKKIAEGMGMIAAAFYPKPVIVRTSDFKSNEYRGMIAGTNYEPQEENPMLGYRGASRYYSELYRAAFEWEVQALAMVREEMGLTNMQVMIPFLRTLEEGRKVLEILRRNGLESGKNGLKIYIMCELPVNVILADEFLNLFDGFSIGSNDLTQLTLGVDRDGQLVSHIFDERNPAMLEMFKRAIKACQKHKKYCGICGQAPSDYPEIAEFLVREGINSISLNPDSIVETWTKVAELEKTLGLS
>NC_013949.1|WP_041913332.1|927616_929815_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MPANLQEQLDKHKLSFEDYEKIQAILGREPNLVELGIFSAMWSEHCSYKSSKKYLRGFPTKAPWVVQGPGENAGVIDITKGYCAVFKVESHNHPSFIEPYAGAATGVGGILRDIFTMGARPVASLNSIRFGRIDGGNPTNKLHQFLLKGVVGGIAGYGNCMGVPTIGGETSFDPCYDGNILVNAFSLGIVKKEEIFYAKAKGVGNPVIYVGSKTGRDGLGGAVMSSDKFDEGSKSLRPTVQIGDPFAEKLLLEACLELFAKDLIIGIQDMGAAGLTSSSFEMAGRSGSGMILHLDRVPMREEGMTPYELMLSESQERMLICAKKGKEREVIEIFEKWEVDVAIIGEVSDSGKMELYWHGELCASLPISPITESAPLLNRPTQEPSYLKSLRAKAQIPQITDPNVLLLQMLSSIEVSDKSYIYEQFDSMVQTNTLQGPGKLDASTIRVKENHTALSLAIFCSPHYCYLNPQVGSKIAVAQAGRKCIARGAIPLAISDCLNFGNPENPEVMWQLKEATSGIKEACEILKTPVVSGNVSLYNQTDDRDIYPTPTIVSVGLHHDVHRVWNSAIKKEGNALILLGEVREEFGGSLAQRLLFNGAISGDCPQIDLYRERALWDLMIACTQKDLIISAKSVGKGGIALALSKMAILGQRGVEVSTSLPQALLFAESQSLMILECAQENIEAIATLAKRHQIACQRIGSIGGAQIQIDTISLPLEKAKQAYYTSFSKYLS
>NC_013949.1|WP_013023130.1|929836_930868_+|lipid-A-deacylase-LpxR-family-protein
MKKIALLFFISHFSFAENLTELQTKEPSTESPNKETPKKESSLTPYHKSFFTIITENDAYLNAHVDRFYTAGTNFNYTSKEYLNSWLGYLSYDFRSPKASRWQIAINQDLYTPISRKANPGPKTHPYAGYLSLNFLISQRRENSIEDLQLQIGVVGPDALGKQTQALIHHLTHNPIFYGWNRQLKNEFILNLTYEYIHRFTLLDSRYFSIDVLPGLKVALGNAKTFAGFGGRLRMGYNLKSDFGVEKVNTGFLGSKPYNDAFSFYVFGGVSGSYVIRNIFIQGNSFGPPTDLSLEHFIYDLEFGASIMYKGFRFSYVITRLSKQFQAQRGAHSFGSIVLSFAF
>NC_013949.1|WP_013023131.1|930867_931341_+|hypothetical-protein
MKKALFFLCVIGLSLAQDSDINSHLSKNSAMLKNYYLAVKKQSANAQYVRFRDFFLIDTKSYYALSPQEKKSLASSLLVMIAIYKRSKPLYSDFGGVSMDGILAEDIDDRRAKTFHYRFDGRYYTDLQNLKKSHILYAYCSLPGFNRCVLLGIGEEW
>NC_013949.1|WP_013023132.1|931572_932025_-|peroxiredoxin
MLKIGDKAPEFCLKNQDDIEISLRDLGGKIVVLYFYPKDNTPGCTLEGQEFSALLPEFESKNALVIGISPDSTKTHKNFITKQQFGHMLLSDGDKSVATRYGAYGKKMMYGKEVMGIIRSTFIIKDEIIQEAFYNIRAKGHAKAVLERIQ

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Crispr_ID: NC_013949_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_5

972985-973091

Orphan

Consensus_repeat	Method
TTGGCTCCTAGCGTGATGGTGTTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013949_5

>merge|NC_013949|5|972985-973091|CRISPRCasFinder
TTGGCTCCTAGCGTGATGGTGTTAGTTCCTTGATTGGTCGCAGTGATATTCGTGCTCACTGTGCCAATCTTTGTGTTGGTGTTGGCTCCTAGCGTGATGGTGTTAGT

>NC_013949|5|5|972985-973091|CRISPRCasFinder
TTGGCTCCTAGCGTGATGGTGTTAGT	TCCTTGATTGGTCGCAGTGATATTCGTGCTCACTGTGCCAATCTTTGTGTTGGTG
TTGGCTCCTAGCGTGATGGTGTTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_081441291.1\|958498_959443_-\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|273100
NC_013949.1\|WP_013023156.1\|959867_961205_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|349886
NC_013949.1\|WP_013023169.1\|991513_991729_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|184484
NC_013949.1\|WP_013023148.1\|950619_953649_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NC_013949.1\|WP_013023155.1\|959520_959865_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274630
NC_013949.1\|WP_158303470.1\|950282_950459_+\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_041913336.1\|957850_958486_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013023165.1\|986250_987603_+\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NC_013949.1\|WP_013023150.1\|954592_955792_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NC_013949.1\|WP_013023151.1\|956368_957229_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|223675
NC_013949.1\|WP_013023163.1\|982354_983101_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_013949.1\|WP_041913142.1\|993120_993858_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NC_013949.1\|WP_013023159.1\|975434_977459_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_013949.1\|WP_013023157.1\|961191_963090_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_013949.1\|WP_013023161.1\|980228_981251_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NC_013949.1\|WP_041913338.1\|991721_993071_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|224736
NC_013949.1\|WP_013023164.1\|983097_985995_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_013949.1\|WP_013023152.1\|957233_957851_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NC_013949.1\|WP_013023162.1\|981361_982225_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225018
NC_013949.1\|WP_013023160.1\|978232_979438_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341180

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_081441291.1\|958498_959443_-\|selenide,-water-dikinase-SelD	gnl\|CDD\|273100	TIGR00476, selenide_water_dikinase, selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring well but not aligning to the beginning of the model is likely to have a selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyzes a tRNA base modification. It also contributes to selenium incorporation by selenium-dependent molybdenum hydroxylases (SDMH), in genomes with the marker TIGR03309. All genomes with SelD should make selenocysteine, selenouridine, SDMH, or some combination.	3.40029e-97
NC_013949.1\|WP_013023156.1\|959867_961205_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|349886	cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase. Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE.	1.30782e-163
NC_013949.1\|WP_013023169.1\|991513_991729_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|184484	PRK14065, PRK14065, exodeoxyribonuclease VII small subunit; Provisional.	5.25923e-06
NC_013949.1\|WP_013023148.1\|950619_953649_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NC_013949.1\|WP_013023155.1\|959520_959865_-\|hypothetical-protein	gnl\|CDD\|274630	TIGR03527, selenium_YedF, selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.	8.29922e-15
NC_013949.1\|WP_013023157.1\|961191_963090_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_013949.1\|WP_041913338.1\|991721_993071_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	4.43986e-131
NC_013949.1\|WP_013023165.1\|986250_987603_+\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NC_013949.1\|WP_013023150.1\|954592_955792_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_013949.1\|WP_013023152.1\|957233_957851_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	2.37103e-23
NC_013949.1\|WP_013023163.1\|982354_983101_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.55386e-125
NC_013949.1\|WP_013023162.1\|981361_982225_-\|hypothetical-protein	gnl\|CDD\|225018	COG2107, COG2107, Predicted periplasmic solute-binding protein [General function prediction only].	6.98558e-100
NC_013949.1\|WP_013023159.1\|975434_977459_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.5103e-121
NC_013949.1\|WP_041913142.1\|993120_993858_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.03698e-99
NC_013949.1\|WP_013023164.1\|983097_985995_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.97866e-69
NC_013949.1\|WP_013023161.1\|980228_981251_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NC_013949.1\|WP_013023151.1\|956368_957229_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|223675	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones].	3.44702e-30
NC_013949.1\|WP_013023160.1\|978232_979438_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341180	cd17291, RMtype1_S_MgeORF438P-TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.MgeORF438P TRD1-CR1 and TRD2-CR2, and to Escherichia coli G5 S subunit (S.Eco16445ORF5013P ) TRD2-CR2 and Acetobacter pasteurianus IFO 3283-01 S subunit (S2.Apa3283ORF14230P) TRD1-CR1. The recognition sequences of Mycoplasma genitalium G-37 S subunit (S.MgeORF438P), Escherichia coli G5 S subunit (S.Eco16445ORF5013P), and Acetobacter pasteurianus IFO 3283-01 S subunit (S2.Apa3283ORF14230P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	9.07422e-76

>NC_013949.1|WP_013023157.1|961191_963090_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MMREWDVLVIGGGHAGIEASCISARMGARTHLLTMLIENIGLASCNPAIGGLGKGHLVKEVDALGGVMGRLSDKSGIQYRILNASKGPAVRGTRAQIDMDAYRIHARNHVLHTPNLSVSQEVVEELLVEDGKIKGVKTNIGKCYFAKKVIITTGTFLRGLVHIGESQSQNGRFGEDSANKLSLSLKELGFELGRLKTGTCPRIDGRSIDFSGLEIHHGDEIPPHFSYHTKDFAPSQLPCFVTYTNAKTHEIIAQNFHRAPLFTGQIEGVGPRYCPSIEDKVHRFASKERHQLFLEPQTRDGVEYYVNGLSTSLPYDIQELVIHSIAGLENARITRYGYAIEYDYCNPTALYHTLETRLISGLYFAGQINGTTGYEEAAAQGIMAGINAVLSLEGNAQKFGMEQLVLRRDEGYIGVMIDDLVTKGTNEPYRVFTSRAEYRLLLREDNALFRLGKYAYRLGLMEEEDYQMLQKDQEDIDRGMEFLTKKTLTPSKETLALLEKIHEAPIVDKCSAVLVAGRDSFSEEKFDVLDEFFKDFSLRARSQLRILCKYDAYIEKQKQSVEQMEEMLRIKIPGDFVFEGIAGLSLEVVEKLNLHRPATLFHAKNISGITPASLEVLHLYIHLHHKKSNASY
>NC_013949.1|WP_013023156.1|959867_961205_-|succinyl-diaminopimelate-desuccinylase
MQATEILQRLITYPTITPKECGIYAQITQILGDFEVIALDKNQIKNLFCYRVFGSQNSSEQEDSLALSASKNLGQNLKNSKNPTESAANAQKQNGDTTLKNPAINNLRDFSALAKLPHLCFAGHVDVVPPGEGWGSDPFVPLQKEGKIYGRGAQDMKGGIAGFLAAILQAKKALMSSKSPKILSVLLTSDEEGVGIDGTRYVLEFLAQKGFLPTFAIVAEPTCNLKMGDVIKIGRRGSINGELLIKGKQGHVAYPEKCKNPTEILGARLGRLAGVDLDSGDESFAPSKLVITDIRGGIEAVNVTPNSLKILFNVRNNTKTTKQDIQKYISSVLEGVEHELTLKQSSHPFLSPKEGYIAQKMQDCIQEILKISPELSTSGGTSDARFFAKYGIEVVEFGVKNDRIHGIDECVEIADLEALCAIFARLVTKFAQDKILEKNLILQKE
>NC_013949.1|WP_013023155.1|959520_959865_-|hypothetical-protein
MEKVLLIKDDKIGDGELGGMVSDGFLSAIADHAQNKELRPRAIVFLNRGVLFGEPGKYPTVFEALQKLQDLGVELEFCKGCVEHFGLEKKLGVGRINDAKNISALLLQYPVLSL
>NC_013949.1|WP_081441291.1|958498_959443_-|selenide,-water-dikinase-SelD
MFSSLPSQSDPKLIAGFEHHEDCGIYALENGDFLLQSIDFITPIVDDPYFYGKIAAANALSDVFAKGAEVCTALNVLMWDREHVSKSCLQEILRGGMEKIKECGALLLGGHTINDREQKYGLSVSGITRSFWPNRGAKIGDVLLLCKPIGSGIITTALKRENLALSAAKECVESMALLNVYAMRIALDFPIHASTDITGFGLIGHLLEMCAEEQSFALEVDKIPLFEPVKELLAQNISLGSKNNRAYFSHAVRDTRERGEDGFLYDAQTSGGIVFALPKNKAWALLDALKKSQYERASIIGEVIPRAQGAILLG
>NC_013949.1|WP_041913336.1|957850_958486_-|hypothetical-protein
MRIFGIFGLFLLFFVGCARLNMGYYSVLQKDYRFNINAPLIIMHNSNDLLSAYYVDLIIYELQRRGFNSVYKQTELRPGTARNAVYIRLFKDIRSYPIVSYNYSVINDGVTSSCYFYGERFYCDNSPQKSFNLTDFTQQTNYALTYHFTLDWYDLYTRKRIMYVDGSVQGKTCGYNYVFRDLIYNTINRMDFTREENYNYTSPLPYYWVCD
>NC_013949.1|WP_013023152.1|957233_957851_-|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MIIRRSFSFCAAHIVRNCTSLRCSRSLHGHNYKVEIFLKADRLDNAGMILDFGIFKKEIATFIDSFDHAHHFWNREAEEWKEFCKKASKRYVELCLNPSAENYALIFLFFIDKILGAMEFGNNEGALWVDSVRVHETDHGYAQAFAQDLQNPNFLKHLSLDGVCFSPGITEEWQDPQLLQKLKNYYKDPTLPKPFVNPSPEQQIS
>NC_013949.1|WP_013023151.1|956368_957229_-|7-carboxy-7-deazaguanine-synthase-QueE
MQILKISEIFYSLQGEGSAIGMPSVFVRVGLCNLRCKGFGERLRYRGEEILGCDSIYAANPKFQEEWREFESSKELISAIFAAVCGNLGSSVDAALRGEAGDFSSAQVGGDALLEAPEPLPPFDIVLTGGEPSLYFQNPALLGAIEFFLARHHRISVESNGSVLFAFTPLLERLHFTLGIKLSNSGEREQKRLNFPAIQNILDHAASVVLKFVLDAKMCQDGSALKEIDAILSQISGSYEVYLMPMGSSIETINQNIKAILPLCLKRGYKLSDRLHIRIWGNQRGF
>NC_013949.1|WP_013023150.1|954592_955792_+|sodium/glutamate-symporter
MKLDFYATLSCMVAVLLIGRFVLRRIKFLRDYNIPEPVVGGLLVAICITIAFKGFGFHIQFDTSLQGPLMLAFFSSIGLNADFASLKKGGGTLVKFLIVVSIFLVAQNLIGVALALGMHQNPLLGLLGGSITMSGGHGTGAAWAATFKESPYFLENGLELAIACATFGLILGGIIGGPVARFLIHAYKLSPKDKEDKDFSGFESPGSMRLITAQSFVESLALIAIALLVGTKIAELLKGTSFSLPTFVWCLFVSVILRNTLSAFKFHQVFEREVSVIGNVSLSLFLASALMTLKLWELANLALPLLILLITQTVLMILYAIFVTFRTMGKDYDAAVLAAGHCGFGLGATPTAIVNMQTITQRYGPSHVAFLVVPMVGAFFIDILNALVIKFFLSLPIFT
>NC_013949.1|WP_013023148.1|950619_953649_+|type-I-restriction-endonuclease-subunit-R
MNYQTIAQSNESTVVAEYFRETERKGSYESEAELEREFIAILEKQGYEYKKIHNQEKLKQNLRESLERLNEFTFSDSEWRDFYTHIIANKQETHKEKTKKFQQVSSFTLDLENGEKKNIKLIDKKNIYRNSLQVIHQYEANGGQNRYDVSILVNGLPLVHVELKKRGVALKNAFTQMQGYAKKSFCVDDGLFDYVQIFVISNGTESKYYSNTIKSSRNGKNTDTFEFTNYWADAKNQKILDLVDFAKTFFARHSILNILTRYCIFTSDENLLVMRPYQIVATERILEKIRIAHQNKSYGTKANGGYIWHTTGSGKTLTSFRAATLTQELKHIAKVLFVVDRKDLDYQTMKEYENFQKGAANATKNTTKLKEHLENPDAKIIVTTIQKLAIFIEKNPKHEIYQKEVVIIFDECHRSLGNVYKQITQAFKKYYFFGFTGTPIFAENCDKSKPQDTTENKFGERLHEYTIIDAISDKNVLPFRVEYTNTTQAKKDIKDKDVRAIDEEKALLDERRIKAITDYIIKNFARLTKNEENYAYAKNLAGESTQNKSGHKGFNSILACSSIKAAKKYYQAFKEQDHSLKIATIFSYSQSEGIDGLEEENNENIDGLDQNSKEFLDNAIKDYNAMFGSNFDTSGFQEYYKDLAKNMKERKIDILIVANMFLTGFDAKTLNTLWVDKNLKYHGLIQAFSRTNRILDSVKTHGNIVCFRNLEQDLNDALKLFGNKNASAIVLLRKYEDYLNGYVDDEGKIYEGYKSLIEKLKGFPLGTSIDLEEEKREFIKLFGSILKLENLLNSFEEFQKSDHITERDFQDYQGMYLNLHDEMKEKREKGEQKEEINEELVFEVELVKQEEVGIDYILNLIYSYKHSELTAPGIREIIDSIINSSTQLRSRKELIEGFVKKYQSNPNFKWQEHVKQQREEEFQNIIKANNLQEKKAYAFMSKAFKSGEISFLGTEFPDILPKMSFFQDGRKEVKAKVEQDLQEFFDKFYEIYKSDFTKQESAKDTAAEV
>NC_013949.1|WP_158303470.1|950282_950459_+|hypothetical-protein
MMLLRQGGSLPSLQPHKKDGPRRVVWLQCTGTSGSIVKNPCGRMPTIKSRACRGGGTT
>NC_013949.1|WP_013023159.1|975434_977459_-|ATP-dependent-helicase
MPLSNLNDEQRLAATAKMGHNLIIASAGTGKTSTIVGRIAHLFDNQILPESILLLTFTNKAAEEMIARVAKKFGQTKARAIQSGTFHAIAYRYLKEKRNITLKQPRELKILFKSIAEKRVYPSFEGTTPYSAQYLYDLYSLFLNTSKDLDFPSWLREKNPAQEQFALIYEGIFEEFDALKKTFHYADYNDLLLLYREEIQKNPIPYAEVLCDEYQDTNPLQDSLLDALNPQSLFCVGDYDQSIYAFNGADISIIANFTRKYPDAQVFTLSKNYRSSSLILDLANRVIQKNPRIYPKRLEVIKSGDFPPPRLLVYEELFLQYQEIARRIASGNPNFDEVAIIFRNNASADGCEASLRELGVPTKRKGSTSFFDTKEVALMLDLCALLYNPKDMMAFIHTLSYGPQIGSSVAKDIYEAFINLGDGDVALGILSPNAKKPYQTRAKNAQLGLFDDLFLLENAARFDGYLAPTFCSHPILSHPKFTRDSALFLQDFCQLFTNLHKEKNPHILIDAIAKNRFYGRITEMLARERAKNKDGSIDPTRKSDALEKIARKVLLLQNLAKHYDSLGKFLNAMILGASEAVQGSGVNLLSIHASKGLEYEEVYVIDLMEGRFPNTKLIQKGGSLEEERRLFYVAVTRAKTRLYLSYAKSDPMKNLQYQPSVFLLEAGMISKMSL
>NC_013949.1|WP_013023160.1|978232_979438_-|restriction-endonuclease-subunit-S
MNRFEKLLQTLCPHGVEFRKLGEVINICKGKQLNKEFLSNYGEYPVMNGGIYASGYWNTYNTNSPKIIISQGGASAGYVNYMTSKFWAGAHCYVIESDSKKVNYKFLFYFLKNKESFLIKSQFGAGIPALNKADIETLPIPLPPLEVQREIVKILDTFTELNTELNTELKLRKKQYEYYRNWLLSFSDVDASKEGAEQRLRDKSYPKALKALLLSLCPHGVEFRKLGEVGEFQKGATISKKNAVPGEVPVIAGGRQPAYYHNHANRIGETIAISSSGAYAGYVSYWNIPVFLSDSFSISPKKENLIPKYLFYWLQVKQDAIYATKSTGGIPHVYSKNLDNLPIPLPPLEVQREIVKILDDFSTLTEDLSSGIPAEIAARKKQYEYYRDKLLTFTPLIKEGE
>NC_013949.1|WP_013023161.1|980228_981251_-|uroporphyrinogen-decarboxylase
MIFIDACKRLETPYTPIWMMRQAGRYLEEYRATRAKAGSFLDLCQDVTLATEVTLQPVEILNVDAAILFSDILLIPLEMGLPLEFIAGEGPRFQKSIESYSDVCALKKDAFERLDYVYDTISSVRARLPQDKALIGFCGAPWTLATYMIEGEGSKTYTKSKKMLYANPQTMHYLLKQITDELKGYLTKQIQAGANAVMIFDSWANALAKDAYFEFSWGYMKDIAKHVKMHHPDIPVILFPKGVAGYLKHIDGDFDVFGVDWSTPLELAKTLLGKKYVLQGNLEPCCLYHEDAMEMGVDEILAVMGKKPGHIFNLGHGMLPDLPRENAIKLVELIHQKTKR
>NC_013949.1|WP_013023162.1|981361_982225_-|hypothetical-protein
MLSIAHSPDADDLFMYYAIVFGWVESELGQRFENIALDIQSLNQKALLGEFDISAISFGVYPLIRQDYVLLRTGLSFGNGYGPKLIKKKGARLKRNFKVALSGEHTSNALLFSLAYPDARIVYKNFLEIEGAVLGGEVDAGVLIHESILCYDSALEVERELWDIWRDLAKEDLPLPLGGMVLRRSLPLNLAIDIEKTLTKAVRVALSGKEILSAMLLERNLIRVDEKKLDAYLNLYANHDSIELSDLQKKGVEKMFALGYEAGFYDVWIKDCEDYLIPREYEMLRHS
>NC_013949.1|WP_013023163.1|982354_983101_+|SDR-family-NAD(P)-dependent-oxidoreductase
MRVLITGASVGFGAEIAKKFSANDHEVILLARRKERLLALQKELGKNCVGILAQDINDFEKLRANLEDFAESIDVLINNAGLALGIEPAYECELADWERMIETNVLSLIRLTHFLLPHMIKRQRGHIINIGSIAGSYPYPGSNVYGATKAFLKQFSLNLRADLLGKNIRVSNIEPGLSGGSEFSLVRFKGEEKRAYELYEGAHPLMPEDIAEAVFWCASLPEHVNINRIELMPTTQAPAGLSVHKDKG
>NC_013949.1|WP_013023164.1|983097_985995_+|FAD-binding-oxidoreductase
MSSKFVVRDYEKFAHEAREICPKRVFTSPLTTFAYGVDASCYSTTPKIVVYAINEEEIKKLIALANACNTPITFKGAGSSLSGQASSESVLIIANQGWKKITVLDAGKRIRLGCGVVGEDANKALKPFGKKIGPDPATIATALIGGIFNNNSSGMCCGVEQNSYHTINSVRVITAQGVVLDTSRKESMYEFLQTQSALVEEILNLRASMLQNPELIAQIKRKYKIKNTVGFSINALVDFEDIQDILNHIFVGSEGCLAFVSEVVYTSVEDFANKACGLLFFEDLSSASKAITILAELGREVLNAAEIMDYACLASCQRVPELAEILQDIPPNTTCILLQTQHETFQGLEANLSKIKESLQDVHMPKALYTHEEKTYNLWWKIRKSLLPLSAGNRPKESIVITEDVCFEIPYFCQGIELIQNLFKRFQFSGIIFGHALSGNVHFVITPNLNDERQKKRFGLFMEDLAKEVVALHGAIKAEHGTGRMVAPFVELEWGKEAYEIHKKIKEIFDPKGLLNPDVIISQNKNVHLQHFKASQSFLDLVDHCMDCGFCEKSCPSRFLTLTPRQRIASSKEIQRLSHSQDPQDILRAKEMEQEYQYFGVETCATCSMCKIACPLEIDTANIALELSKKPHHKGFEYVYKHFGGFLKVARGMLSLGNFAQSVIPPMKLYHFSKSLHQKFHFLPIIPPFLPQKNDFFAKQKRTCFHTPVQKNEAAQNEAAQAHKITPHPQASKEAKEIRELKEVIYFSTCMNRSFKPSKLLPNNRPLQEVMESIAKKAGIRLIYPKNLEKLCCKKPFSHIEAIKKDEGLARDLMEMSQNGKIPILVDHSACSAHMILEVAKNLPLEILDSTEFLYLATKNLHFKKIEKKIAIHQMCALKKLHKEHFIIELVQRCSDHYHVLEKLSCCGFSGYKGFFTPELNECNITPLSLDHCDLGVSSSSTCEIGLSLKLPFLNVAYLVDEALT
>NC_013949.1|WP_013023165.1|986250_987603_+|L-seryl-tRNA(Sec)-selenium-transferase
MQKLLSQLPKMDKILHHKDFASYNKILLKKIARKTLSSYQTQIQNKTLTKPPILQDLLKTIKQEYQKITSPTLRPLINATGVVLQTNLGRSILSKKLLSRVFGLFNEYCNLEYDLQSGQRGSRDEHVREILCALLDCEDALVVNNNAAALLLIISTFAKQKEVILSRGELIEIGGSFRIPEIIKDAGARLMEVGTTNKTHLQDYERAIGEHTAMLLKVHKSNFNQSGFVSSIELSRLIALAKAHGVLDYYDAGSGYICGLDCDEPSLLDIAELRPSLVSFSGDKLLGGVQAGIIFGKKELITKLRQNHLLRALRMDKLNLALLQQTLLCYLQNRLDEIPTIAMLKTPLHVLEQRAKMLLSLITPLPSLESSLVFLESCAGGGSLPDMRFPSYGVALECESLATKELARLLRQEGVITRSKNEKILLDVRCLQERHCKKIAKILQKITGGD
>NC_013949.1|WP_013023169.1|991513_991729_-|exodeoxyribonuclease-VII-small-subunit
MDDARVEQRDFEQRVERIKEILASLSDADLSLKEGLSLYKEGIKELQEAQEMLEIAKMEYEAIKINSKDKS
>NC_013949.1|WP_041913338.1|991721_993071_-|cation:dicarboxylase-symporter-family-transporter
MVSKWQTLVIFAILFFVFFVLKKLQNKQVDFSIRMLVGLVAGLCFGFILEALADYPEDSKSVVWLNEARNWFGFFADAFVAFIKMLVIPIISISIIKVVIDIDKDIKISSLLSRSLFWILFTVAIAGGVGVILGYVFDLGLQTKDFVPEAKIREVKTITQILLGLIPGNIIDSMAKNNIIALVIFSFFIGFGAKSMGRAEGFEQCSLLFERFVHAVHKIIMDITLFIIRFMPYAVVCMMAEVLLSNGFGAIKTAIKFIILIYVAMVIMLVVYCVILALRGLNPFIFMKKVLPVILFSFTSRSSVSTLPITVSTLQNKVGVSSGVANFVASIGTTVGLNGCAGYFPALVAIFIANSIGVHIDVSFVVIVILMVILGSLGIAGVPGSATMAASIMLAGIGFSDQFVLLSIVLAIDPIIDMARTSSNVTGAMVAAVCTDKDLKNLNREVYYG
>NC_013949.1|WP_041913142.1|993120_993858_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MENKQEQILENKQEKIIEMFNEIAPNYDRINRIMSMGVDVAWRRDACKRALELQKNNPLCIADIACGTGDMILHWEKQSRDRKVSFIGIDPSSKMLEVAKEKLSKIPAKLHESMAQDLWVLENESVDVLSIAYGIRNVVDIERALSEFWRVLKPNGVLVILEFTRKECRGFLDKMMQFYTRKILPVVGGMISRNYRAYAYLPHSIDGFLSTEVLEQKIKERGFKMMMVKGYNVNISTLFLAKKEQ

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Crispr_ID: NC_013949_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_6

988649-988747

Orphan

Consensus_repeat	Method
CCCCCACCCCGGTCAGGCTCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013949_6

>merge|NC_013949|6|988649-988747|CRISPRCasFinder
CCCCCACCCCGGTCAGGCTCTACTTTTTACCGTGGGCGGGGCCCGCATGGGTTTTAAACACTGCTTCCCCTCTAATCCCCCACTCCGGTCAGGCTCTAC

>NC_013949|6|6|988649-988747|CRISPRCasFinder
CCCCCACCCCGGTCAGGCTCTAC	TTTTTACCGTGGGCGGGGCCCGCATGGGTTTTAAACACTGCTTCCCCTCTAAT
CCCCCACTCCGGTCAGGCTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_013023156.1\|959867_961205_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|349886
NC_013949.1\|WP_013023159.1\|975434_977459_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_013949.1\|WP_013023169.1\|991513_991729_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|184484
NC_013949.1\|WP_013023178.1\|999212_999647_-\|hypothetical-protein	unknown	unknown	unknown
NC_013949.1\|WP_013023157.1\|961191_963090_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_013949.1\|WP_041913338.1\|991721_993071_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|224736
NC_013949.1\|WP_013023165.1\|986250_987603_+\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NC_013949.1\|WP_013023173.1\|995251_995692_-\|protoporphyrinogen-oxidase-HemJ	unknown	unknown	gnl\|CDD\|367596
NC_013949.1\|WP_013023175.1\|996615_997176_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|225728
NC_013949.1\|WP_013023164.1\|983097_985995_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_013949.1\|WP_013023172.1\|993847_995242_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NC_013949.1\|WP_013023176.1\|997569_998337_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|143585
NC_013949.1\|WP_013023163.1\|982354_983101_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_013949.1\|WP_013023177.1\|998362_998656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373687
NC_013949.1\|WP_013023158.1\|963086_975371_-\|glycine-rich-autotransporter-protein	unknown	unknown	gnl\|CDD\|377133
NC_013949.1\|WP_041913142.1\|993120_993858_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NC_013949.1\|WP_013023174.1\|996019_996619_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NC_013949.1\|WP_013023161.1\|980228_981251_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NC_013949.1\|WP_013023162.1\|981361_982225_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225018
NC_013949.1\|WP_013023160.1\|978232_979438_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341180

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_013023156.1\|959867_961205_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|349886	cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase. Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE.	1.30782e-163
NC_013949.1\|WP_013023159.1\|975434_977459_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.5103e-121
NC_013949.1\|WP_013023169.1\|991513_991729_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|184484	PRK14065, PRK14065, exodeoxyribonuclease VII small subunit; Provisional.	5.25923e-06
NC_013949.1\|WP_013023157.1\|961191_963090_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_013949.1\|WP_041913338.1\|991721_993071_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	4.43986e-131
NC_013949.1\|WP_013023165.1\|986250_987603_+\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NC_013949.1\|WP_013023173.1\|995251_995692_-\|protoporphyrinogen-oxidase-HemJ	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	4.45467e-52
NC_013949.1\|WP_013023175.1\|996615_997176_-\|META-domain-containing-protein	gnl\|CDD\|225728	COG3187, HslJ, Heat shock protein [Posttranslational modification, protein turnover, chaperones].	7.91619e-12
NC_013949.1\|WP_013023164.1\|983097_985995_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.97866e-69
NC_013949.1\|WP_013023172.1\|993847_995242_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NC_013949.1\|WP_013023176.1\|997569_998337_-\|TerB-family-tellurite-resistance-protein	gnl\|CDD\|143585	cd07316, terB_like_DjlA, N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.	3.37372e-08
NC_013949.1\|WP_013023163.1\|982354_983101_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.55386e-125
NC_013949.1\|WP_013023177.1\|998362_998656_-\|hypothetical-protein	gnl\|CDD\|373687	pfam15254, CCDC14, Coiled-coil domain-containing protein 14. This protein family, Coiled-coil domain-containing protein 14 (CCDC14) is a domain of unknown function. This family of proteins is found in eukaryotes. Proteins in this family are typically between 301 and 912 amino acids in length.	0.00204916
NC_013949.1\|WP_013023158.1\|963086_975371_-\|glycine-rich-autotransporter-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	2.36959e-08
NC_013949.1\|WP_041913142.1\|993120_993858_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.03698e-99
NC_013949.1\|WP_013023174.1\|996019_996619_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	7.75831e-43
NC_013949.1\|WP_013023161.1\|980228_981251_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NC_013949.1\|WP_013023162.1\|981361_982225_-\|hypothetical-protein	gnl\|CDD\|225018	COG2107, COG2107, Predicted periplasmic solute-binding protein [General function prediction only].	6.98558e-100
NC_013949.1\|WP_013023160.1\|978232_979438_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341180	cd17291, RMtype1_S_MgeORF438P-TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.MgeORF438P TRD1-CR1 and TRD2-CR2, and to Escherichia coli G5 S subunit (S.Eco16445ORF5013P ) TRD2-CR2 and Acetobacter pasteurianus IFO 3283-01 S subunit (S2.Apa3283ORF14230P) TRD1-CR1. The recognition sequences of Mycoplasma genitalium G-37 S subunit (S.MgeORF438P), Escherichia coli G5 S subunit (S.Eco16445ORF5013P), and Acetobacter pasteurianus IFO 3283-01 S subunit (S2.Apa3283ORF14230P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	9.07422e-76

>NC_013949.1|WP_013023165.1|986250_987603_+|L-seryl-tRNA(Sec)-selenium-transferase
MQKLLSQLPKMDKILHHKDFASYNKILLKKIARKTLSSYQTQIQNKTLTKPPILQDLLKTIKQEYQKITSPTLRPLINATGVVLQTNLGRSILSKKLLSRVFGLFNEYCNLEYDLQSGQRGSRDEHVREILCALLDCEDALVVNNNAAALLLIISTFAKQKEVILSRGELIEIGGSFRIPEIIKDAGARLMEVGTTNKTHLQDYERAIGEHTAMLLKVHKSNFNQSGFVSSIELSRLIALAKAHGVLDYYDAGSGYICGLDCDEPSLLDIAELRPSLVSFSGDKLLGGVQAGIIFGKKELITKLRQNHLLRALRMDKLNLALLQQTLLCYLQNRLDEIPTIAMLKTPLHVLEQRAKMLLSLITPLPSLESSLVFLESCAGGGSLPDMRFPSYGVALECESLATKELARLLRQEGVITRSKNEKILLDVRCLQERHCKKIAKILQKITGGD
>NC_013949.1|WP_013023164.1|983097_985995_+|FAD-binding-oxidoreductase
MSSKFVVRDYEKFAHEAREICPKRVFTSPLTTFAYGVDASCYSTTPKIVVYAINEEEIKKLIALANACNTPITFKGAGSSLSGQASSESVLIIANQGWKKITVLDAGKRIRLGCGVVGEDANKALKPFGKKIGPDPATIATALIGGIFNNNSSGMCCGVEQNSYHTINSVRVITAQGVVLDTSRKESMYEFLQTQSALVEEILNLRASMLQNPELIAQIKRKYKIKNTVGFSINALVDFEDIQDILNHIFVGSEGCLAFVSEVVYTSVEDFANKACGLLFFEDLSSASKAITILAELGREVLNAAEIMDYACLASCQRVPELAEILQDIPPNTTCILLQTQHETFQGLEANLSKIKESLQDVHMPKALYTHEEKTYNLWWKIRKSLLPLSAGNRPKESIVITEDVCFEIPYFCQGIELIQNLFKRFQFSGIIFGHALSGNVHFVITPNLNDERQKKRFGLFMEDLAKEVVALHGAIKAEHGTGRMVAPFVELEWGKEAYEIHKKIKEIFDPKGLLNPDVIISQNKNVHLQHFKASQSFLDLVDHCMDCGFCEKSCPSRFLTLTPRQRIASSKEIQRLSHSQDPQDILRAKEMEQEYQYFGVETCATCSMCKIACPLEIDTANIALELSKKPHHKGFEYVYKHFGGFLKVARGMLSLGNFAQSVIPPMKLYHFSKSLHQKFHFLPIIPPFLPQKNDFFAKQKRTCFHTPVQKNEAAQNEAAQAHKITPHPQASKEAKEIRELKEVIYFSTCMNRSFKPSKLLPNNRPLQEVMESIAKKAGIRLIYPKNLEKLCCKKPFSHIEAIKKDEGLARDLMEMSQNGKIPILVDHSACSAHMILEVAKNLPLEILDSTEFLYLATKNLHFKKIEKKIAIHQMCALKKLHKEHFIIELVQRCSDHYHVLEKLSCCGFSGYKGFFTPELNECNITPLSLDHCDLGVSSSSTCEIGLSLKLPFLNVAYLVDEALT
>NC_013949.1|WP_013023163.1|982354_983101_+|SDR-family-NAD(P)-dependent-oxidoreductase
MRVLITGASVGFGAEIAKKFSANDHEVILLARRKERLLALQKELGKNCVGILAQDINDFEKLRANLEDFAESIDVLINNAGLALGIEPAYECELADWERMIETNVLSLIRLTHFLLPHMIKRQRGHIINIGSIAGSYPYPGSNVYGATKAFLKQFSLNLRADLLGKNIRVSNIEPGLSGGSEFSLVRFKGEEKRAYELYEGAHPLMPEDIAEAVFWCASLPEHVNINRIELMPTTQAPAGLSVHKDKG
>NC_013949.1|WP_013023162.1|981361_982225_-|hypothetical-protein
MLSIAHSPDADDLFMYYAIVFGWVESELGQRFENIALDIQSLNQKALLGEFDISAISFGVYPLIRQDYVLLRTGLSFGNGYGPKLIKKKGARLKRNFKVALSGEHTSNALLFSLAYPDARIVYKNFLEIEGAVLGGEVDAGVLIHESILCYDSALEVERELWDIWRDLAKEDLPLPLGGMVLRRSLPLNLAIDIEKTLTKAVRVALSGKEILSAMLLERNLIRVDEKKLDAYLNLYANHDSIELSDLQKKGVEKMFALGYEAGFYDVWIKDCEDYLIPREYEMLRHS
>NC_013949.1|WP_013023161.1|980228_981251_-|uroporphyrinogen-decarboxylase
MIFIDACKRLETPYTPIWMMRQAGRYLEEYRATRAKAGSFLDLCQDVTLATEVTLQPVEILNVDAAILFSDILLIPLEMGLPLEFIAGEGPRFQKSIESYSDVCALKKDAFERLDYVYDTISSVRARLPQDKALIGFCGAPWTLATYMIEGEGSKTYTKSKKMLYANPQTMHYLLKQITDELKGYLTKQIQAGANAVMIFDSWANALAKDAYFEFSWGYMKDIAKHVKMHHPDIPVILFPKGVAGYLKHIDGDFDVFGVDWSTPLELAKTLLGKKYVLQGNLEPCCLYHEDAMEMGVDEILAVMGKKPGHIFNLGHGMLPDLPRENAIKLVELIHQKTKR
>NC_013949.1|WP_013023160.1|978232_979438_-|restriction-endonuclease-subunit-S
MNRFEKLLQTLCPHGVEFRKLGEVINICKGKQLNKEFLSNYGEYPVMNGGIYASGYWNTYNTNSPKIIISQGGASAGYVNYMTSKFWAGAHCYVIESDSKKVNYKFLFYFLKNKESFLIKSQFGAGIPALNKADIETLPIPLPPLEVQREIVKILDTFTELNTELNTELKLRKKQYEYYRNWLLSFSDVDASKEGAEQRLRDKSYPKALKALLLSLCPHGVEFRKLGEVGEFQKGATISKKNAVPGEVPVIAGGRQPAYYHNHANRIGETIAISSSGAYAGYVSYWNIPVFLSDSFSISPKKENLIPKYLFYWLQVKQDAIYATKSTGGIPHVYSKNLDNLPIPLPPLEVQREIVKILDDFSTLTEDLSSGIPAEIAARKKQYEYYRDKLLTFTPLIKEGE
>NC_013949.1|WP_013023159.1|975434_977459_-|ATP-dependent-helicase
MPLSNLNDEQRLAATAKMGHNLIIASAGTGKTSTIVGRIAHLFDNQILPESILLLTFTNKAAEEMIARVAKKFGQTKARAIQSGTFHAIAYRYLKEKRNITLKQPRELKILFKSIAEKRVYPSFEGTTPYSAQYLYDLYSLFLNTSKDLDFPSWLREKNPAQEQFALIYEGIFEEFDALKKTFHYADYNDLLLLYREEIQKNPIPYAEVLCDEYQDTNPLQDSLLDALNPQSLFCVGDYDQSIYAFNGADISIIANFTRKYPDAQVFTLSKNYRSSSLILDLANRVIQKNPRIYPKRLEVIKSGDFPPPRLLVYEELFLQYQEIARRIASGNPNFDEVAIIFRNNASADGCEASLRELGVPTKRKGSTSFFDTKEVALMLDLCALLYNPKDMMAFIHTLSYGPQIGSSVAKDIYEAFINLGDGDVALGILSPNAKKPYQTRAKNAQLGLFDDLFLLENAARFDGYLAPTFCSHPILSHPKFTRDSALFLQDFCQLFTNLHKEKNPHILIDAIAKNRFYGRITEMLARERAKNKDGSIDPTRKSDALEKIARKVLLLQNLAKHYDSLGKFLNAMILGASEAVQGSGVNLLSIHASKGLEYEEVYVIDLMEGRFPNTKLIQKGGSLEEERRLFYVAVTRAKTRLYLSYAKSDPMKNLQYQPSVFLLEAGMISKMSL
>NC_013949.1|WP_013023158.1|963086_975371_-|glycine-rich-autotransporter-protein
MIFSKIQKTFVAFSLAGFLTPFANAAAAQGDIDNNSEANKQVTINNGDKLNGHISTQGGGHSTTVTFQGNSSMENGYIYVSAINRNAQPPQQPGGAASNNIILQGNSFLNLNAAKGNATITLNNGTSKITVTLNNGAAAGGGGGAGGGGAGAGSTKIDFSILAVGANAANNINDVTTTTLANAGATKGRIAGGIYAIDSGRNSITNLRNTEISGPLVAQEKGQNTLSIDLGSKAQGYISAISGGSNTITLNAGGILAIPNTQNAPQAQNGAAGGVQPPAQGGANHLNVSIFSDGKDSQNTITSNGNAAQQSTIAGAVLAINGATNNLQLNNAKIDGNIKAQDGASNTITLSAGSINNVITQGNNAKNNITLSGTATINGFVTNNVTTNGGQATPATGSSNTITLNANSKLNLNATANGETNSNNAALSSSGQGNSNIITGNTTQQNKITNNIYAGNGGSNSVTLQNLEQSGNMIADGAGSKNTLNLTSFTLKGNGNGGAQGGNAVIEAKNAGNNTITAQMLALTGDISANSSGSNTLTIGGAQKSNITGNITATGVINPPAAPGGPGVGTGQAGKNATKNTLNLINTTITGNISATQKGDNILTLDGGEVIGNISATNQGSNTLTIGSAANATKIQGNIEAQANGRNTIQFNNGSVTTISATGQAGENIITLGNQNFIANNQANISATGQGKNTITIQGVNFTGNITANNQGSNTITDDFRLAAPSTITGKIEAQANGSNSITLQNITITGGIDATGTNATNTITLGANTNTKIGTVSTNITATNQGTNTITLGANTSLTGNIEAREGGINALKEDAQNTQSFLINGQVLANGGSNTLALANTEITGGITASGAGSQNTIIVSSNNAATSLQSNVTANNSGGNTITIGGNNNGAAAPGQGGNGQGVAPANPGDFGKLVGNILAEGKNSSNTITLNGSGNFTGNLWSKTTQDNAQGQQGQGQQPQPQPAPAPGGAPGGQQAQPQQPQAPAAPQAGAAPGNQAQQNHNTITLNGNATLTLRGLGANNPFGIYALGNGANNIIKDNSNGNQASTITGGITADNVDAAQTTNVATNNITLKNVNITGNISAFNGGKNALKLSNAQIQGGMLANTQGANTLDVQANGRVSMHGTITANNGNGNANPAPNVPITSNTITLQNGSQFSVLANNNTDAFQAIGSGANNSLTEANGAGSSNGEIQGQIFAQNGGKNTIIMRKISIQGNANASGGENAITIGGNALAGNNAQNFPASMQGSLIANSSNVNGIPSPSKNTLILKGEASFSNGYLMAFGTNTQQTSSNNVVINDHATISLTGSQITNAQGQKVGTGDDAIFSSGYRSYNQILDTTDGKKPQIINGNIYATQNSNNNATIKSGNSIQLLSANITGNVDAENNGLNILILGHAAPNNWNNPALNPGQQNQPNQGQAQNFKSTLSGSIIAKNIASNNLDLTNTAMNATPNKLYAISATGGAGNTLITQNTLILNGNSSIANTYVSALQTATNTNVQNTQNTIRVLDGSSINLVANIKDDNAILASGVRALNLITNTPAAGQIGNPGVANPNQPPQPPQPQPPAPGNPVTKNSINGNITAANQGTNTITLGNLSLQGNITVDTMGSNTLNLTDSTINAQGTVGGIIVSSTSQDPVKESASNTITLKGNSIITQTFVRAFQMRTIDQKVNGNNWATKAVTNTITLEDNSSVQLVSGADVDPDTGEGLGGDNHVAVLAYGVWAKNIITDHTNGNANTGGPMNTITGDIKAIFNATNEITLNRVTMSGDIIAQSNATNTIVFGKNANSGSFLGNITALSPFSPSKNEITFQGMTVGGAEHKKIFVQSADAPSTNTIKLANSTLSNMSMDASAGVNTITLQDEKSTIALTADKTTGNALYATSNGRNVILEAQSVNANAATKPNTITGQIFAQQGGENSINLQQLTITGNVSADDASNNITISKSGTITGDILSQNGATNTLELKDTTLNAAQISAGEHNANNVASTNNITMTGESEFHVQNAGNDAILANGGRNNITQGATGRINGIDGNISATAHGSNTITLDNLTMNGNISVSGGSNTLVFGKNAQQSSITGNVLATQGTNTITSTKAVLTGGVSAVYSGNNAPPQKPAPTPNNGTGPNALPPPVPPPPPRVELAANTITLKDSSLQNAYLIAQNKQGGNSSAANTLNLEQGSSVNFVDHDGNAIYADGENASNVINDAQNALNGAPPVKPNHPLNQIQSNITATNQGTNTITLKNVNVIGSIIAKEKGANTLTLGSKDNNPANILTGDMLASGGSNTATISNTKMTGSLRALVGSSTNSLTLKDGSSMSGYMEAISQNGNASNTITLNDSSLVTLNGASIKDANGKAVGKGNDAIYTQGKGASNIINAENGVTAAPPPAPGTAPTGFNTINGNILAVDGGSNTLNFKRLQFTGSMYALGGGGSNVLIVAGSSGIKGGILQANGSNVTNTLTLNDSAKISNFYLDAVAQNGNATNTITLKDTTTMQLTGASAINAQGQGASNTINGGTTGSNAITGNITALEKGNNTITLTNLDITGAISANSGGNHIAIQKGKITGNIAALGGGSNDISDNLAKATNPAPNPPPPPNPPAGNAALVVATQSITANGQGSQNTITLEGQSSISTVTMSAINGGVNNLGSVANFIITDGNITASGKGGKNIITPTEASFSLKANGAGNALIAQDGGTNTIILKAGKAAFSIEGNIIAQNGGQNDYTNTKATAGIGGQPPAPAPQTTSIMGSIIAEGAGASNTLHFNGTINNANSAGYLAAQNGATNTLDLSATSTFTFMTKDNVAAIFAEGTGGKNTIIASNATNGNAGAGNGAANTILGSIIAQNAGVNDLSQVARFDMSNGGIMAQGGNAENKIIATNSNFTLMSINGGQNAILADSGSNSITLTGGTSSITGNISANAGINTLTYKVAANAGGAGGVNGAGITIVGAMEAQGNGAQNNITIQGGASKIQNSTLSAINGGVNTITLSNGASLGLNQTSTQAVFADAGNNTVINQDTKAANTILGSIIAQNGGKNDLEKLVNLVINSAHVSAVGNDAKNLILLQDKSSITLIANDKNKNAILADGGSNNISQSLALQLQKTPPANGGQNAATPGTPTPAPGTTSTPPAGANAANMKQNITGNVTALNQGSNTLILNQLTMHGDVIADAGENIIKMTGASLLSGAMIANHGGSNTLNFTKEGGVALQNNNGNGYVIYADGGAKNTLTDGTNADKTNPIGTVLSSIIGNVAALGGGINSFSLSNATFDGNILANGSGQNSFTITQGSSSKTQGVQAYGQGSVNILTYAKFNARGFVMGAGDGGKNVLSLALAENKPTTPNTGTPANGMLDFQISTGEGSSNLIAVQGIAHGANAKIYYTGGVTDLILSATNNTQTTAKNPDITNGLNPSNFTNGLMLSLNASKANAMLGSLRDVSNYTTNVTTVTMRSATDYVFSGTYIGSINILSGTPGASGNGTVLAAQKGATNPGVTFNIDKFSLLDADFVNKKANYSINLDEGSRWMVNASTTVMNLSAVNVRENADVSSSTLLQKNTIVDMVAGDLYKNHGFIDLKIHDAKDLNHVYFRGVANLEQKKADLIDIMTATGSTSDARLQTYYSDYDLKNANNYVYEPQNRGNNILVATVENVARSNFAFNVSGPSVIKQGYLLVETWYAKVTEPKNPSITPPSGSGNSQGGQGSQGSGQGTTIQGAQNLVDNYYIKGFSAEINPQENQNTTSLLASVYLVYLSSLDNLNKRMGELRDGVYNNNLWMRDFVGHSTSKFFSVKNFYNNLQGGYDYGFAAEKGMHYVGVSFGYGYNRLRAPLYDAIGTSMNGAIYYTYIGDSGFYADTLVRYDYISINTKSNNVKTPPRGNVFTIKEELGYRLNFDKARRFWVDGNLALYGGFMTKVQMLQEMGMLEQDKLASSGSVSFLMRGAVGMTFGYSLRTGSNQTDFRLGASYVGNYNAGKLILNVSGIATSTSEFFYNHMALVSFGINSMITENVRLYFEGQAGFLGKLINQDYLFNAGVRYSFGSQKREHPSYAVTFQKSQKKNEENTKEKPKEITGSRIQQANQPQRPQQNYQRSQGNYQQQNYQQQNYRQRGGQ
>NC_013949.1|WP_013023157.1|961191_963090_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MMREWDVLVIGGGHAGIEASCISARMGARTHLLTMLIENIGLASCNPAIGGLGKGHLVKEVDALGGVMGRLSDKSGIQYRILNASKGPAVRGTRAQIDMDAYRIHARNHVLHTPNLSVSQEVVEELLVEDGKIKGVKTNIGKCYFAKKVIITTGTFLRGLVHIGESQSQNGRFGEDSANKLSLSLKELGFELGRLKTGTCPRIDGRSIDFSGLEIHHGDEIPPHFSYHTKDFAPSQLPCFVTYTNAKTHEIIAQNFHRAPLFTGQIEGVGPRYCPSIEDKVHRFASKERHQLFLEPQTRDGVEYYVNGLSTSLPYDIQELVIHSIAGLENARITRYGYAIEYDYCNPTALYHTLETRLISGLYFAGQINGTTGYEEAAAQGIMAGINAVLSLEGNAQKFGMEQLVLRRDEGYIGVMIDDLVTKGTNEPYRVFTSRAEYRLLLREDNALFRLGKYAYRLGLMEEEDYQMLQKDQEDIDRGMEFLTKKTLTPSKETLALLEKIHEAPIVDKCSAVLVAGRDSFSEEKFDVLDEFFKDFSLRARSQLRILCKYDAYIEKQKQSVEQMEEMLRIKIPGDFVFEGIAGLSLEVVEKLNLHRPATLFHAKNISGITPASLEVLHLYIHLHHKKSNASY
>NC_013949.1|WP_013023156.1|959867_961205_-|succinyl-diaminopimelate-desuccinylase
MQATEILQRLITYPTITPKECGIYAQITQILGDFEVIALDKNQIKNLFCYRVFGSQNSSEQEDSLALSASKNLGQNLKNSKNPTESAANAQKQNGDTTLKNPAINNLRDFSALAKLPHLCFAGHVDVVPPGEGWGSDPFVPLQKEGKIYGRGAQDMKGGIAGFLAAILQAKKALMSSKSPKILSVLLTSDEEGVGIDGTRYVLEFLAQKGFLPTFAIVAEPTCNLKMGDVIKIGRRGSINGELLIKGKQGHVAYPEKCKNPTEILGARLGRLAGVDLDSGDESFAPSKLVITDIRGGIEAVNVTPNSLKILFNVRNNTKTTKQDIQKYISSVLEGVEHELTLKQSSHPFLSPKEGYIAQKMQDCIQEILKISPELSTSGGTSDARFFAKYGIEVVEFGVKNDRIHGIDECVEIADLEALCAIFARLVTKFAQDKILEKNLILQKE
>NC_013949.1|WP_013023169.1|991513_991729_-|exodeoxyribonuclease-VII-small-subunit
MDDARVEQRDFEQRVERIKEILASLSDADLSLKEGLSLYKEGIKELQEAQEMLEIAKMEYEAIKINSKDKS
>NC_013949.1|WP_041913338.1|991721_993071_-|cation:dicarboxylase-symporter-family-transporter
MVSKWQTLVIFAILFFVFFVLKKLQNKQVDFSIRMLVGLVAGLCFGFILEALADYPEDSKSVVWLNEARNWFGFFADAFVAFIKMLVIPIISISIIKVVIDIDKDIKISSLLSRSLFWILFTVAIAGGVGVILGYVFDLGLQTKDFVPEAKIREVKTITQILLGLIPGNIIDSMAKNNIIALVIFSFFIGFGAKSMGRAEGFEQCSLLFERFVHAVHKIIMDITLFIIRFMPYAVVCMMAEVLLSNGFGAIKTAIKFIILIYVAMVIMLVVYCVILALRGLNPFIFMKKVLPVILFSFTSRSSVSTLPITVSTLQNKVGVSSGVANFVASIGTTVGLNGCAGYFPALVAIFIANSIGVHIDVSFVVIVILMVILGSLGIAGVPGSATMAASIMLAGIGFSDQFVLLSIVLAIDPIIDMARTSSNVTGAMVAAVCTDKDLKNLNREVYYG
>NC_013949.1|WP_041913142.1|993120_993858_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MENKQEQILENKQEKIIEMFNEIAPNYDRINRIMSMGVDVAWRRDACKRALELQKNNPLCIADIACGTGDMILHWEKQSRDRKVSFIGIDPSSKMLEVAKEKLSKIPAKLHESMAQDLWVLENESVDVLSIAYGIRNVVDIERALSEFWRVLKPNGVLVILEFTRKECRGFLDKMMQFYTRKILPVVGGMISRNYRAYAYLPHSIDGFLSTEVLEQKIKERGFKMMMVKGYNVNISTLFLAKKEQ
>NC_013949.1|WP_013023172.1|993847_995242_-|argininosuccinate-lyase
MAKLWGGRFGKESAKLLELFNASIPFDYKLWRYDILGSKTHAKMLHQIGVLDAAEYDAIIKGLLEIGREIEAGEFVFDIVDEDIHMAIEKALIQKIGDVGKKLHTARSRNDQVALDFRLYVLDANAKIQALLQKLMRTLLEIAKHHTEDIMPGMTHLQHAQPINFGFHLVAWCANLKRDIERLQASFLRNNYLPLGSGALAGTPYKNDRLMMAEELGFIAPTLNAMDSVSERDFALDLLYDIAMISMHISRIAEELVLWSSYEFGFISLSDDYTTGSSIMPQKKNPDVPELLRGKSGRIFGNLIALLVVMKGLPFAYNKDTQEDKEGVFDSVENIQICLEILSAMLQKMQVNPKNMLQMAKIGHLSATDLADFLVRECGVPFREAHHITGEIVLFAEKKGLDLSELEEEEILSLNPKIKKGVKEILDLRASMDARDSLGGTASAQTKEQIRILEAYLDGLEHGK
>NC_013949.1|WP_013023173.1|995251_995692_-|protoporphyrinogen-oxidase-HemJ
MDGAQLYLYVKIFHIVAVISWMAALFYLPRLFVYHSEYFENTGFCEVVKIQERKLFNAIGTPAMLATLLSGGTLLLLDPGIFKSGMWIHVKLLFIIFLVIFHFLCLYYMKKFAQGQMPASGKFFRFFNEIPTIALVVIITCVVLRF
>NC_013949.1|WP_013023174.1|996019_996619_-|YigZ-family-protein
MKKIVGEAFFELEAKKSSFLGFLFPWEHFAEKLQELKNTHLKAVHFVYAYRVYDSGRVEEAFSDDGEPRGSSGMPVLNVLRGRDLVDSAAIVVRYFGGTLLGVGGLVRAYTQSIVECVKIAESKNLLQDFVQECQREFFCSYALLSRVEYLAKILELELQKDRFCDAGVVLHIRGREGSVEEFAAQVEQMRFVNKPSQG
>NC_013949.1|WP_013023175.1|996615_997176_-|META-domain-containing-protein
MLKFFSLIVVFVLSGCGLLDLFKGSFSGNNWEIEKIVIQGKSYDGLRGMKDHALKLLSTKDEVKDDAQNNQDPLASMDGNQEMSPEDLQELAQKDNVSSLRFDTKQNRIYGDAGCNNFSADYSWKDADDIEIYEINITRRICNPPSLMDFELLFAQNLKGLFFVEKKGKTAMILRNKDVQIYLKSL
>NC_013949.1|WP_013023176.1|997569_998337_-|TerB-family-tellurite-resistance-protein
MEYLLLIIAAGVVFYLYQSLKEYLKNPIEPRSKKEKAEKLEYDLKEDPYYVTPKTQEEQFGATELGVCLAICAKTPNRARMQEGYDVLMDHLLEQYFSNNPLEEKYKDLAKQACGKEDTRGLIALAKEFLTLSYAEYKKRLKFVEFLLLLGYLDGVLDNEEKEYLLDVAANLELDNQDFNALYDAYAEKFAKEIPALPDFESEEAKLLALQTRVRGSNSNFLDVKSRDFLSLAYDCAQICKTPIQESNSSLDNPA
>NC_013949.1|WP_013023177.1|998362_998656_-|hypothetical-protein
MFRILLRLIFAGCIAWFWHYINPSDPPIISVSVFLLVFFILTLRPIGFSFPLKREEYIHQMRKKNERLLAIEEKKKEERERAKKLTRLKKEKNQSNL
>NC_013949.1|WP_013023178.1|999212_999647_-|hypothetical-protein
MKFDKLQDKHCENIIKFLMQKKKSFILWCKIDEVSFDPPLPASILQDFRPISPFVLAGYTFESLALTERGISFEAGFGSENIGSIVEMDLSSILQIAITVGEKESVIFVRLDSKKIFVEESLEEEEMKRSMEAILSNPHNKQYL

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Crispr_ID: NC_013949_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013949_7

1533491-1533604

Orphan

Consensus_repeat	Method
CAAGCCCTAGATGAAGAGAAAAGATATCAAGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013949_7

>merge|NC_013949|7|1533491-1533604|CRISPRCasFinder
CAAGCCCTAGATGAAGAGAAAAGATATCAAGCACAAATGGAAAAAAGGGCATATGACTCTGGGGATGAGGGGGCAAAGCAAGCCCTAGATGAAGAGAAAAGATATCAAGCACAA

>NC_013949|7|7|1533491-1533604|CRISPRCasFinder
CAAGCCCTAGATGAAGAGAAAAGATATCAAGCACAA	ATGGAAAAAAGGGCATATGACTCTGGGGATGAGGGGGCAAAG
CAAGCCCTAGATGAAGAGAAAAGATATCAAGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013949.1\|WP_158303481.1\|1539545_1539965_-\|DUF411-domain-containing-protein	unknown	unknown	gnl\|CDD\|225564
NC_013949.1\|WP_013023728.1\|1541201_1541513_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NC_013949.1\|WP_013023712.1\|1521482_1522262_+\|methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NC_013949.1\|WP_013023730.1\|1542577_1543039_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224961
NC_013949.1\|WP_013023713.1\|1522283_1523075_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NC_013949.1\|WP_013023725.1\|1539018_1539561_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_013949.1\|WP_013023724.1\|1537966_1539022_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_013949.1\|WP_041913414.1\|1523238_1523724_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_013949.1\|WP_013023711.1\|1520830_1521472_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NC_013949.1\|WP_013023729.1\|1541559_1542588_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NC_013949.1\|WP_013023717.1\|1528036_1530142_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NC_013949.1\|WP_013023719.1\|1530512_1531721_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NC_013949.1\|WP_041913415.1\|1534981_1535752_-\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|181417
NC_013949.1\|WP_013023715.1\|1524068_1525442_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NC_013949.1\|WP_041913416.1\|1540205_1541015_-\|3'-5'-exonuclease	unknown	unknown	gnl\|CDD\|99825
NC_013949.1\|WP_013023723.1\|1536662_1537970_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013949.1\|WP_013023722.1\|1535772_1536663_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NC_013949.1\|WP_013023709.1\|1518509_1519256_+\|fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|184136
NC_013949.1\|WP_013023716.1\|1525443_1527768_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|224643
NC_013949.1\|WP_013023710.1\|1519829_1520837_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863

Protein	Function_ID	Function_description	E-value
NC_013949.1\|WP_158303481.1\|1539545_1539965_-\|DUF411-domain-containing-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	1.55918e-43
NC_013949.1\|WP_013023728.1\|1541201_1541513_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.23246e-26
NC_013949.1\|WP_013023712.1\|1521482_1522262_+\|methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	5.88187e-99
NC_013949.1\|WP_013023730.1\|1542577_1543039_-\|hypothetical-protein	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	0.00027473
NC_013949.1\|WP_013023713.1\|1522283_1523075_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.36863e-106
NC_013949.1\|WP_013023725.1\|1539018_1539561_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	1.06386e-75
NC_013949.1\|WP_013023724.1\|1537966_1539022_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	5.02511e-161
NC_013949.1\|WP_041913414.1\|1523238_1523724_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.31719e-16
NC_013949.1\|WP_013023711.1\|1520830_1521472_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	5.0158e-86
NC_013949.1\|WP_013023729.1\|1541559_1542588_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	8.25074e-76
NC_013949.1\|WP_013023717.1\|1528036_1530142_-\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.03205e-24
NC_013949.1\|WP_013023719.1\|1530512_1531721_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	1.28123e-175
NC_013949.1\|WP_041913415.1\|1534981_1535752_-\|enoyl-ACP-reductase	gnl\|CDD\|181417	PRK08416, PRK08416, enoyl-ACP reductase.	0
NC_013949.1\|WP_013023715.1\|1524068_1525442_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_013949.1\|WP_041913416.1\|1540205_1541015_-\|3'-5'-exonuclease	gnl\|CDD\|99825	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.	1.71721e-82
NC_013949.1\|WP_013023723.1\|1536662_1537970_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.69906e-103
NC_013949.1\|WP_013023722.1\|1535772_1536663_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	9.87093e-143
NC_013949.1\|WP_013023709.1\|1518509_1519256_+\|fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|184136	PRK13552, frdB, fumarate reductase iron-sulfur subunit; Provisional.	1.24184e-178
NC_013949.1\|WP_013023716.1\|1525443_1527768_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|224643	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown].	1.65199e-08
NC_013949.1\|WP_013023710.1\|1519829_1520837_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	2.58581e-168

>NC_013949.1|WP_013023719.1|1530512_1531721_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MEYKIFPIKGGVCAPRGFLADGYCAGLGKLDKEGRAALDVGYIYMQIPCCVYALFTQNAFKAAPILHFLENVSGKKSNFVLINTKNANAMTGKRGLEDVYEILSALQKKFPQIQNPIMSSTGVIGYHLPKEKILSSFDQIYLEKRDESGHERAATAIMTTDRYAKEIAFEVIDSLGKKFRIGAMAKGAGMIQPSMATMLCYITTDARLNNAQSLLERAVKKTFNTISVDGDMSTNDSVMLFCSEDVEVQEEIFEEVLVMALEKLAKDIVRDGEGSTKLVGFKINSAWSDAEAERAAKALSNSLLVKTAIFGGDPNWGRIASTIGASGVKCDANLLKIRIGGVLVYDCGEIYFDKETEARAGKKMQQESFLIECDLGMGEGSYLAYGCDLGYEYVKINADYRS
>NC_013949.1|WP_013023717.1|1528036_1530142_-|TonB-dependent-receptor
MKNLTKIFLPPLFLTPLFSQEASLERIQTTSEAGNESKVEKERSSSKVTGKELIKYTIKTTEQLGRIFPNLHIYSRGADTFPMISYRGVSSPDYYSSILGLYVDGIPQSPSFLIQTLGDVENIELINGSEGLLYGENAPLGIISITSKNPMKKPYALASLQGSRLQQGINLQMGRELIKDKLWGKGNFRYIYDNGFIKDPVTKKMLNPGQSLIAGTSLYYQPIESLLLNANYSYYHTFTRKDFFFTQSQIKSLTLPNNQGITWQEFSDGVQDRILNKTPFMNLDAQNASLKMEYFTKSSTLSVVGAYQKVDTLANEYPGIYVQNEKKDGYYYNNAQFIGEARLHTTYKGGQETLFGIYYKNLLTDNGMVNVPTEPIGYSGNWDAAERLNTFAIFGNASFPFGAFSLHAGVRYQLFHNRIVSKNPPVTDIAPYTNAKTFNTVNPRLSLFWHFSKQSSFYLQLSTSTKPGGFAKFPFADTDTIPYGSENIYSAELGNKTHALSNRLQVKTAFYGIFRTDTQAYAGNGYYKSIKNIGNAYAYGVDFTLKYQGDYFDLFASFNLGESRFAKGGKNIGTITILGVTGHYNISGLRPKFSPLFSLNTGTDIYFFKIPNHNLKLTSLLHFSTGYYIKDFTRSSALYQKPFVLLELSLIYNFRKRYTFMIFGQNLTNARYITHAIHNAKGNAYSIGNPINFGGKVIYRY
>NC_013949.1|WP_013023716.1|1525443_1527768_-|tetratricopeptide-repeat-protein
MRKIACFFFLMVWAHALKVDITYGREQNSPFSIITLTHAKPFACQTLSREDYSSDIIECIIKETPEAGFLPFDTNFFEVSYEMVDQKFHLIIKSKKHQRLLFIPDDIQDSGFFVQRRDKFSRTWQIVGYEKKLPFLSEKKPLGINFPISLSRQKYPFVGEIGVDKNPMNTNLGADYAEYLKVKDLVDSQSYRAALNNIANAFKKYPKTLFAKDFLFFQIKALYHLKRYDSAIDYANAWLKNYSSDTSVPEMLYLVANSYARLRFPSESNYYYRRIIDEYPGNRFAALSKIKIANMFAGGSNVGLARLYYSQAYQEAKNLNDAVDIAMEWALFEIQSNSLANARDLFEKSFHANPKYFTEHQDQTLNLLGVLKEHKMDDIAAKIAQYFVDHINKQEANYEKVLFLLGELYEGAGQFDRAHVANLAYLKEYDGLVGAKEVQRRDDNLLFELSGSAKEKLDRYDVILQKYPSTPEAKKAAHLKAELLLKEKDYLAVLAMKDLLKQDKGPYNSALSALINQDMQENRCAIAAQYLGEISDFSEIKDKLKTFDCLYELNLNAKANLLAKSQIQDKNSKDYLPWLYRYAKNLYKLGKYQDSILASRDVLAIARAENAKQYEDILFTLFDALALSNLPEATNIYGSLEQNFPNDPRMLSVYFALLNQKDIINSAKLVYATKLYDLQKSLHSSDYSPFVDFMLIDALKQGGDNARAYEVATKLIAQKLSDPNKQRALYIKADLEIKQGKKKQASATLKQCTDIAEQSSWKTLCAQSKDLLKE
>NC_013949.1|WP_013023715.1|1524068_1525442_-|phosphomannomutase/phosphoglucomutase
MSIFREYDIRGIFGKDLTRNHVFAIGVFVGQRILSQGQRIVFVGFDARVHSQELLEWLGAGLEHGGVDVVEIGMVPTPVAYFCTYHEIDGICATSSIMITGSHNPPEYNGFKITIDRKPFYGSQIQSLRQEIESSNLVAIPRSRDRVCVDALSQYVAFLSTHFQSLENFPYAIALDYGNGVAGLGMERILENLGIHHQSLYANPDGTFPNHHPDPSEEKNLKDLKDLMRTQDLPIGLAFDGDGDRIALLTQNHHFKGDELGILFAKQIAQNKPNPLIIGEVKCSQVMYDAINAFGKGLMYKTGHSNLKVKLKELGADLAVEMSGHIFFHDRYYGYDDATYAGLRALELFAKKSPKELEDVIAQLPKVYATPEEKIPTTEEEKFEKIASLHQRLKNPPLGFPKIVEIIAIDGVRVVFEKGWGLVRASNTTPVLVTRFEAENEALAMEYKKALLKLLES
>NC_013949.1|WP_041913414.1|1523238_1523724_-|GNAT-family-N-acetyltransferase
MTIQTFSLQSLAQLQDFYAKRIADNPLGFIQRLDLLPSICDFVHELRKNGGEFWEVSDDGKLIGICGLAHIDKMQAQLCKFHIAAPYQGLGLGKRLYGVVEQYALSKGYAKISLHVSKTQIKACKLYEKLGFLRLREEDCIVSLGQETLVFPTIFMEKILS
>NC_013949.1|WP_013023713.1|1522283_1523075_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKSFYKILFTVFSIAFLLGCKNSDKEHVIIIGASPVPHAQILEHVKPELKKLGYDLQIRSYTDYVTPNEALLDGSLDANFFQHVPFLEAFNKSRKSDLQSAGKVHIEPLSIYSAQIKNLDELKENDAILIPNDPSNLARALILLDSLNVIKLKDPSNLNTTEQDIIENPKNLKIVPLEAALLADNLHDKKARAIVINGNYALQKGLKDPIAQEGEKSPYANVIATQKKNVNSPKIQALLKALHSKDTRDFILKQYKGEVIPVF
>NC_013949.1|WP_013023712.1|1521482_1522262_+|methionine-ABC-transporter-substrate-binding-protein
MKVFKFFLLLVALTFAACNNNQAPKNILRVGATPVPHAEVLEFIKPQLARKGISLEVVVFNDYITPNTALNDKSIDANLFQHLPFLQKQIADRKYDLVASGPILLVPLGIYSNKIHNLDELGQNDVVSIPNDPSNLARALILLDSLHIIKLIDPNNLNATEQDIIENPKKLKLVPLEAPMLAQSLKDVVISIVPGNFSLQAKLQDPLAQESRDNPYPNVVATRRDNQNDPKIKALLEALHSKETRDHIQSYYKGAVLVY
>NC_013949.1|WP_013023711.1|1520830_1521472_+|ABC-transporter-permease
MLGTLLQSTLDTLIMVFFSSFFAVIFGLPLGIFLFITQRDSLLPMPKTNKVLGTIVNVVRSFPFIILIVLLLPLSRLLIGTSIGVGAAIISLSTAAIPFIARMFEGALGEINKGLIEAAISMGANKFTIVKMILLETLPSLIHVFVIAVISIIGYSAMAGAVGAGGLGDLAIRIGYQSNQPDVMLYTVLVIIAMVQIIQSIGDFITKRLRKYR
>NC_013949.1|WP_013023710.1|1519829_1520837_+|ATP-binding-cassette-domain-containing-protein
MIRLRNIQKIYPNGFCAIKNLNLEIHKGDIFGIIGYSGAGKSTLIRLINRLEEPTSGEVLIDGVNILGLNAKALQKERQKIGMIFQHFNLLSSMNVYHNVAFALKIAKWQDKDIHARVLELLELVGLSDKKDFYPSQLSGGQKQRVAIARALANHPKILLCDEATSALDTKTTQSILQLLKDIHNKLKITIILITHQIEVVRSICNKVCVIDRGDIIEQGDIGRVLTHPTHAITHELIASMPHKSDADLYKHIPESSNLYELIFVGRQKDIPIISDTITKHQVCINIHFADFDYLNDEAFGRMIVGIEGANSKDAIAYIQSHNIEIKTFYKEEKC
>NC_013949.1|WP_013023709.1|1518509_1519256_+|fumarate-reductase-iron-sulfur-subunit
MSSPQTEGRIITIRVLKFDPQSAVSKPHFKEYQLQEAHSMTIFIALGMIREKFDPDLSFDFVCRAGICGSCGMMINGRPRLACKTLTQDFPDGVITLMPLPAFKLIKDLSVNTGEWFAGMTKKVESWIHSNTTIDISKVEEKIDPDVAQEVFELDRCIECGCCIASCATKLMREDFVGAAGMNRIVRFMIDPHDKRSDEDFYELVGNDDGVFGCMSLIACHDTCPKDLPLQSKIAYLRRKMIQVGMKG
>NC_013949.1|WP_041913415.1|1534981_1535752_-|enoyl-ACP-reductase
MKGKTLVISGATRGIGKAILYRFAKAGVNIAFTYNKNQEEAHKIALDVEEKYGIKAKYYALNVLEPELYIELFKRIDEDFPRVDFFISNAIIYGRNVVGGFAPFMRLKPKGLCNIYTATVLAFVVGAQEAAKRMKEVGGGAILSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAATELGAFGIRVNAISGGPIDTDALRAFPDYAEVRAKVEEQSPLKRMGNPEDLAGAALFLCDQSQSGWLTGQTIVIDGGTTFQ
>NC_013949.1|WP_013023722.1|1535772_1536663_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSFCLDGAMSALITPFKHNKIDESSYIELIKRQIKYGMQACVPVGTTGESATLSHNEHKQCIEIAVETCKNTGVKVLAGAGSNATHEAIELAQFAQKCGADAILCVTPYYNKPTQRGLYEHYKAVANSVEIPLMLYNVPSRTGVEIETATAISLFNDVKNIFAIKEANGSMNTIIELNTYAEGLAIFSGEDSINYPILANGGRGVISVTGNLLPDKIVQLVKTALCGRMSDSKAINNELYVLNRVLFCESNPIPIKACLYLSGLIDTLEYRLPLLAPSKENMKLLEKTLQKYEVLK
>NC_013949.1|WP_013023723.1|1536662_1537970_-|insulinase-family-protein
MKKLLFFLGVMAMSIASNLPKYESKVLENGLQIVVIPMHNQSNVIQTSIFYKVGSRNEFMGKSGIAHMLEHLNFKSSKNLKAGEFDEIVKKFGGITNASTGFDYTHYFVKSSAQNLDKTLGLFAELMQNLSLKKEEFLPERDVVAEERRWRTDNSPTGYLYFRFFNTAFTYHPYHWTPIGFMDDILHWKIKDIRTFHKTYYQPQNAIVLVSGDIEPKEVFQKAGEHFGLIKNKGKIPVVFSKEPIQDGQRNIIVHKDTQIEWLAFGFKIPNFAHKDQVALSALSSLLSNGKSSLLYQELVDKKKLVNQIYGYNMDMVDEGVFMFIAAANQNISAEQIKQEIFKIINQIKEGKITQEELQKLKINMKAEFLYGLEDASSVADLFGSYFARGDIRPLLNYEENFQNLDIQDIVEVAKKYLVLEKSTSVILKPQVKEK
>NC_013949.1|WP_013023724.1|1537966_1539022_-|quinone-dependent-dihydroorotate-dehydrogenase
MISYQTFRNLIFKCDAENAHKYAEKFLSHIANKPLVQDFLLRQFHDSHSMLQNTVCGLIFDNPIGLAAGFDKNASMLEGLSALGFGFLELGTITQRPQEGNPRPRLFRHVEEKSIQNAMGFNNDGAQKIKNRLQRSFPFCIPLGINLGKNKHIEQKDALKDYEAVLKEFLDLGDYYVFNLSSPNTPNLRDLQNESFVSELFAMARSLTRKPLFLKISPDMDTDSMLAVCQRAIDHQASGIIATNTTIDYSLVCHPKEIGGISGQALKEKSAEVFKVLAEHFFKKTILISVGGISDAKEAYKRIRQGASLVQILTGLIYEGPGICKSINGGLVQFLKQDGFEHINEAIGVDL
>NC_013949.1|WP_013023725.1|1539018_1539561_-|gamma-carbonic-anhydrase-family-protein
MEQTLIPHHSHTPILHPQTYVFNGVHIIGQVEIQKDCSIWFGSVLRGDVHYIQIGQRSNIQDLTTIHVGYPDSEGRGYVKIGEDVTIGHNCIIHGCTIEDFVIVGMGSIIMDDAHIGAHSIVGAGSLVTKGKKFPPKSLIMGNPAKFIRELSDQEILSIAESSRHYVELAQSYKLIQGKE
>NC_013949.1|WP_158303481.1|1539545_1539965_-|DUF411-domain-containing-protein
MKKICLGLMFGALFAQSHVTVYEDSNCGCCGKWSAYLGQNGFDVEESKTPRVQEYKDKYKIPREMRSCHTGMVEGYFLEGHIPAQDIKRLLQERPKDIAGLSVPNMPIGSPGMEQGDLHQHFVTYAIKKDGSIILWSKH
>NC_013949.1|WP_041913416.1|1540205_1541015_-|3'-5'-exonuclease
MICVLDIETIPDVDILRRMYPDAALLSDLDLCAHAFFLQKEKTGSEFLPLHLHKIICISSVLADEYGYFIKVGNFGKGEGEENLLTEFLSFMDKKNPKLVSFNGRNFDIPAILLRSMRYNLSAIAYYETENPKHNKNKWENYRQRYSERFHVDLFDTLGNFGNVRGLQLDKICMMLDLPGKYDISGDMVHHIYYDPTLDEEEKMEQIQTYCQSDVLNTYWVYLKYELLRGAMSKEDYFSILLDFRSKIPQDRSYSSHFLQALDRELARA
>NC_013949.1|WP_013023728.1|1541201_1541513_-|thioredoxin-family-protein
MQNITEKEYGQVTKEGLVVVEFGASWCPDCVRIEPIMQALSKEYEGKVKFYKVNFDDAESLKETLNIRRIPTLLFFKNGVEVGERLIEPGNRLVIENAIKALF
>NC_013949.1|WP_013023729.1|1541559_1542588_-|putative-sulfate-exporter-family-transporter
MRTSLIYGILFVGVIVLVSFYLEGLLFARRIPISALLIGVIMGALLSPLFRRKKDYLEAGINFSAKKLLRFGIVLYGFNVTLDQISGIGWSGFLIALCVVVGIFALGSYVGVKFLKLDKDVAMLVSGGSAICGAAAVLALESSIKSEPYKGIIAVGTVVFFGLLSMFLYPLFYVFFLHDSFSQTQMGVYIGATLHEVANVVGAAGSIGLDASVAAITVKMIRVILLVPLLLIIPYLTAKNPKEGVRRQFPIPWFAFLFLLMVVINSFIDPLIGPFLSQDLIEKSTYILRLLCSISLVFAMSALGLQIDLKKFLSSGGRAFLLGAILFGTLLVLGFLLVKIFA
>NC_013949.1|WP_013023730.1|1542577_1543039_-|hypothetical-protein
MQEQDFEQTSSLIKPKDKLLICNAINVDLCGELVSIKEGSAQVVFSASSIMTTDGEKSIHAGFIFNSASYAALCAINKRNSIIIGSDVKFLAPIEIGHEILFQATTLQSGIKKCEVKVEGFLLDIKVFEGMFYIAIFDKKLFKLKLKEEGNAH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013949_1	1.1\|24742\|29\|NC_013949\|CRISPRCasFinder,CRT	24742-24770	29	MN940411	Staphylococcus phage f2b1, partial genome	98357-98385	6	0.793
NC_013949_1	1.8\|25203\|30\|NC_013949\|CRISPRCasFinder,CRT,PILER-CR	25203-25232	30	MN694636	Marine virus AFVG_250M782, complete genome	35107-35136	6	0.8
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	161397-161426	6	0.8
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NC_010113	Vibrio sp. 0908 plasmid p0908, complete sequence	13055-13084	6	0.8
NC_013949_1	1.1\|24742\|29\|NC_013949\|CRISPRCasFinder,CRT	24742-24770	29	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	304474-304502	7	0.759
NC_013949_1	1.1\|24742\|29\|NC_013949\|CRISPRCasFinder,CRT	24742-24770	29	KX171213	Staphylococcus phage vB_SscM-2, complete genome	133203-133231	7	0.759
NC_013949_1	1.1\|24742\|29\|NC_013949\|CRISPRCasFinder,CRT	24742-24770	29	NC_047767	Staphylococcus phage vB_SscM-1, complete genome	133202-133230	7	0.759
NC_013949_1	1.9\|25269\|30\|NC_013949\|CRISPRCasFinder,CRT,PILER-CR	25269-25298	30	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	123767-123796	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP013333	Fusobacterium hwasookii ChDC F174 plasmid unnamed2, complete sequence	3796-3825	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	141186-141215	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MH059636	Erwinia phage Cronus, complete genome	6822-6851	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP014284	Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence	245402-245431	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP032609	Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence	39243-39272	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	315624-315653	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	405700-405729	7	0.767
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	209871-209900	7	0.767
NC_013949_1	1.2\|24807\|30\|NC_013949\|CRISPRCasFinder,CRT	24807-24836	30	MN855765	Myoviridae sp. isolate 14, complete genome	9457-9486	8	0.733
NC_013949_1	1.6\|25071\|30\|NC_013949\|CRISPRCasFinder,CRT,PILER-CR	25071-25100	30	NC_008376	Geobacillus phage GBSV1, complete genome	10713-10742	8	0.733
NC_013949_1	1.6\|25071\|30\|NC_013949\|CRISPRCasFinder,CRT,PILER-CR	25071-25100	30	NC_009737	Bacillus virus 1, complete genome	10710-10739	8	0.733
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	14883-14912	8	0.733
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NC_010697	Erwinia tasmaniensis Et1/99 plasmid pET49, complete sequence	13915-13944	8	0.733
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	170871-170900	8	0.733
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP045770	Enterobacter cancerogenus strain MiY-F plasmid pCFSAN086183, complete sequence	85780-85809	8	0.733
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	525-554	8	0.733
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	170456-170485	8	0.733
NC_013949_1	1.4\|24939\|30\|NC_013949\|CRISPRCasFinder,CRT,PILER-CR	24939-24968	30	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	420159-420188	9	0.7
NC_013949_1	1.5\|25005\|30\|NC_013949\|CRISPRCasFinder,CRT,PILER-CR	25005-25034	30	KU594605	Cyanophage S-RIM50 isolate RW_29_0704, complete genome	28918-28947	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	CP041517	Bacillus aryabhattai strain KNU10 plasmid unnamed1, complete sequence	8647-8676	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250021	Prevotella phage Lak-B2, complete genome	549521-549550	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250024	Prevotella phage Lak-B5, complete genome	543211-543240	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250028	Prevotella phage Lak-B9, complete genome	549735-549764	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250023	Prevotella phage Lak-B4, complete genome	550234-550263	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250025	Prevotella phage Lak-B6, complete genome	546338-546367	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250022	Prevotella phage Lak-B3, complete genome	546428-546457	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250027	Prevotella phage Lak-B8, complete genome	551354-551383	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MK250020	Prevotella phage Lak-B1, complete genome	547653-547682	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NC_049978	IAS virus, complete genome	35804-35833	9	0.7
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NZ_CP013122	Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed1, complete sequence	13526-13555	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NC_021277	Fusobacterium nucleatum subsp. animalis 4_8 plasmid unnamed, complete sequence	13497-13526	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	KX160205	Lactococcus phage 49801, complete genome	14189-14218	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	KX160212	Lactococcus phage 98101, complete genome	13189-13218	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	MN693456	Marine virus AFVG_25M411, complete genome	8521-8550	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	AF323670	Bacteriophage bIL309, complete genome	12750-12779	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	AF323669	Bacteriophage bIL286, complete genome	14778-14807	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NC_002668	Lactococcus prophage bIL309, complete genome	12750-12779	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	KX160218	Lactococcus phage 98204, complete genome	15585-15614	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	NC_002667	Lactococcus prophage bIL286, complete genome	14778-14807	10	0.667
NC_013949_2	2.1\|561385\|30\|NC_013949\|CRISPRCasFinder	561385-561414	30	KX160213	Lactococcus phage 98102, complete genome	13119-13148	10	0.667

1. spacer 1.1|24742|29|NC_013949|CRISPRCasFinder,CRT matches to MN940411 (Staphylococcus phage f2b1, partial genome) position: , mismatch: 6, identity: 0.793

tagagttagtagttctctttttctttcct	CRISPR spacer
gagagttagtagctctccttttcttttaa	Protospacer
 ***********.****.********.

2. spacer 1.8|25203|30|NC_013949|CRISPRCasFinder,CRT,PILER-CR matches to MN694636 (Marine virus AFVG_250M782, complete genome) position: , mismatch: 6, identity: 0.8

tcgtagcgttatctttcccatgcacagcat	CRISPR spacer
acggagcgttatctttaccatgcacatcga	Protospacer
 ** ************ ********* *.

3. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgatattaaagaataccttata	Protospacer
 *********************. .** *

4. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NC_010113 (Vibrio sp. 0908 plasmid p0908, complete sequence) position: , mismatch: 6, identity: 0.8

caagaaaatgatattaaagaatggtttttt---	CRISPR spacer
taagacaatgatattaaagaa---tttttcagg	Protospacer
.**** ***************   *****.

5. spacer 1.1|24742|29|NC_013949|CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tagagttagtagttctctttttctttcct	CRISPR spacer
ggcgattactagtactctttttctttcct	Protospacer
 . ..*** **** ***************

6. spacer 1.1|24742|29|NC_013949|CRISPRCasFinder,CRT matches to KX171213 (Staphylococcus phage vB_SscM-2, complete genome) position: , mismatch: 7, identity: 0.759

tagagttagtagttctctttttctttcct	CRISPR spacer
tctctctagtagttctctttctctttctt	Protospacer
*    .**************.******.*

7. spacer 1.1|24742|29|NC_013949|CRISPRCasFinder,CRT matches to NC_047767 (Staphylococcus phage vB_SscM-1, complete genome) position: , mismatch: 7, identity: 0.759

tagagttagtagttctctttttctttcct	CRISPR spacer
tctctctagtagttctctttctctttctt	Protospacer
*    .**************.******.*

8. spacer 1.9|25269|30|NC_013949|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 7, identity: 0.767

tgatgcagttgcaacacgtagaaagagtct	CRISPR spacer
tgatgcagttgcacctcgtagaagtcttcg	Protospacer
************* * *******.   **

9. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP013333 (Fusobacterium hwasookii ChDC F174 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
taagaaaataaaattaaagaatggtaatga	Protospacer
.********.* *************  *

10. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgaaattaaagaataccttata	Protospacer
 ********** **********. .** *

11. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MH059636 (Erwinia phage Cronus, complete genome) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagagaatgatgttaaagaatgggattca	Protospacer
 ****.******.***********  **.

12. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgaaattaaagaataccttata	Protospacer
 ********** **********. .** *

13. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgaaattaaagaataccttata	Protospacer
 ********** **********. .** *

14. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgaaattaaagaataccttata	Protospacer
 ********** **********. .** *

15. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgaaattaaagaataccttata	Protospacer
 ********** **********. .** *

16. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aaagaaaatgaaattaaagaataccttata	Protospacer
 ********** **********. .** *

17. spacer 1.2|24807|30|NC_013949|CRISPRCasFinder,CRT matches to MN855765 (Myoviridae sp. isolate 14, complete genome) position: , mismatch: 8, identity: 0.733

tgagctatacggattgcaaagattcttttt	CRISPR spacer
cataatatactgattgcaaggattctttat	Protospacer
.. . ***** ********.******** *

18. spacer 1.6|25071|30|NC_013949|CRISPRCasFinder,CRT,PILER-CR matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 8, identity: 0.733

tcaacgcctgcaatattgtaattaatcttc	CRISPR spacer
tcaacgcttgcaatattgtaaaaagattct	Protospacer
*******.*************  *. .*..

19. spacer 1.6|25071|30|NC_013949|CRISPRCasFinder,CRT,PILER-CR matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 8, identity: 0.733

tcaacgcctgcaatattgtaattaatcttc	CRISPR spacer
tcaacgcttgcaatattgtaaaaagattct	Protospacer
*******.*************  *. .*..

20. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 8, identity: 0.733

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttaataaatgatattaaagaaggattttca	Protospacer
. *. **************** *.****.

21. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NC_010697 (Erwinia tasmaniensis Et1/99 plasmid pET49, complete sequence) position: , mismatch: 8, identity: 0.733

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ctttttaatgatattgaagaatgttttttc	Protospacer
*     *********.******* *****.

22. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 8, identity: 0.733

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttaataaatgatattaaagaaggattttca	Protospacer
. *. **************** *.****.

23. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP045770 (Enterobacter cancerogenus strain MiY-F plasmid pCFSAN086183, complete sequence) position: , mismatch: 8, identity: 0.733

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
aatcaaaatgatattaatgaacggtttgag	Protospacer
 *  ************* ***.*****

24. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.733

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
taacaaaatgatattaaagaataattaaag	Protospacer
.** ******************..**

25. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 8, identity: 0.733

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
taacaaaatgatattaaagaataattaaag	Protospacer
.** ******************..**

26. spacer 1.4|24939|30|NC_013949|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

tttaaagttttgcggcgatgaactgcatgt	CRISPR spacer
acgcaccctttgcggcgatgaacttcatgc	Protospacer
 .  *  .**************** ****.

27. spacer 1.5|25005|30|NC_013949|CRISPRCasFinder,CRT,PILER-CR matches to KU594605 (Cyanophage S-RIM50 isolate RW_29_0704, complete genome) position: , mismatch: 9, identity: 0.7

cttgctccacccacacgttatacttgctag	CRISPR spacer
ataactccaccaacacgttatactttgagt	Protospacer
 * .******* *************   .

28. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to CP041517 (Bacillus aryabhattai strain KNU10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
gttgtctatgatattaaagaatgattttgg	Protospacer
   *   ****************.****

29. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

30. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

31. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

32. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

33. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

34. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

35. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

36. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaag-----aatggtttttt	CRISPR spacer
caagaaaatgataataaagaaaacaaagaa-----	Protospacer
************* *****     ** *.

37. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NC_049978 (IAS virus, complete genome) position: , mismatch: 9, identity: 0.7

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
agttaaaataatattaaagaatggtaagat	Protospacer
 .  *****.***************    *

38. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NZ_CP013122 (Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttctaaaatgatattaaaaaatggtaaaga	Protospacer
.   **************.******

39. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NC_021277 (Fusobacterium nucleatum subsp. animalis 4_8 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttctaaaatgatattaaaaaatggtaaaga	Protospacer
.   **************.******

40. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to KX160205 (Lactococcus phage 49801, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

41. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to KX160212 (Lactococcus phage 98101, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

42. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to MN693456 (Marine virus AFVG_25M411, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
gaagaaaaagatattaaagaataacaaaaa	Protospacer
 ******* *************...

43. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to AF323670 (Bacteriophage bIL309, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

44. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

45. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NC_002668 (Lactococcus prophage bIL309, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

46. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to KX160218 (Lactococcus phage 98204, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

47. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

48. spacer 2.1|561385|30|NC_013949|CRISPRCasFinder matches to KX160213 (Lactococcus phage 98102, complete genome) position: , mismatch: 10, identity: 0.667

caagaaaatgatattaaagaatggtttttt	CRISPR spacer
ttcaaaaatgatattaaaaaatggtggagg	Protospacer
.  .**************.******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013949

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection