CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	0 crisprs	csa3,DEDDh	0
NC_007763	Rhizobium etli CFN 42 plasmid p42b, complete sequence	0 crisprs	NA	0
NC_007761	Rhizobium etli CFN 42, complete sequence	0 crisprs	WYL,csa3,cas3,DEDDh	7
NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	0 crisprs	csa3	0
NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	0 crisprs	NA	0
NC_004041	Rhizobium etli CFN 42 plasmid p42d, complete sequence	0 crisprs	NA	2
NC_007762	Rhizobium etli CFN 42 plasmid p42a, complete sequence	0 crisprs	NA	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

812947 : 818705

Pseudomonas_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011424133.1\|812947_813295_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.4e-38	63.6
WP_011053348.1\|813452_813836_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	5.4e-05	51.1
WP_011053349.1\|813832_814177_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-10	31.6
WP_011053350.1\|814250_815843_+\|transposase	IS66-like element ISRel15 family transposase	A0A218MNE7	uncultured_virus	1.3e-52	33.1
WP_011053350.1\|816314_817907_-\|transposase	IS66-like element ISRel15 family transposase	A0A218MNE7	uncultured_virus	1.3e-52	33.1
WP_011053349.1\|817980_818325_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-10	31.6
WP_011053348.1\|818321_818705_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	5.4e-05	51.1

DBSCAN-SWA_2

1585514 : 1594734

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011424840.1\|1585514_1586813_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.4e-97	50.8
WP_003547190.1\|1586822_1587299_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_011424841.1\|1587302_1588610_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.5e-34	39.1
WP_011424842.1\|1588609_1589221_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.6e-17	35.4
WP_011424843.1\|1589339_1590209_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.2e-94	59.2
WP_011424844.1\|1590218_1591106_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	1.9e-29	35.4
WP_011424845.1\|1591109_1592165_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.5e-97	52.2
WP_011424846.1\|1592171_1592750_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	1.2e-32	44.3
WP_042118210.1\|1592739_1594734_-	hypothetical protein	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	6.1e-07	27.0

DBSCAN-SWA_3

1908774 : 1921866

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042119237.1\|1908774_1909788_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.6e-24	42.6
WP_041678867.1\|1909806_1910664_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.7e-33	35.2
WP_020921130.1\|1910660_1911365_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.1e-39	47.0
WP_011425113.1\|1911547_1911739_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.8e-09	72.1
WP_011425114.1\|1911789_1912410_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_020921132.1\|1912406_1913234_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-52	45.7
WP_011425116.1\|1913330_1914614_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.0e-97	45.7
WP_011425117.1\|1914618_1915392_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.1e-23	30.2
WP_011425118.1\|1915388_1916042_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-16	34.7
WP_011425119.1\|1916181_1917771_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.0e-12	30.0
WP_011425120.1\|1917857_1918730_-	ATP-binding protein	NA	NA	NA	NA
WP_011425121.1\|1918933_1919281_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.2e-12	38.0
WP_011425122.1\|1919325_1921866_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.4e-56	48.2

DBSCAN-SWA_4

2058009 : 2109424

Faecalibacterium_phage(14.29%)

protease,transposase,integrase

attL 2049607:2049655|attR 2113139:2113187

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2049607:2049655	attL	NA	NA	NA	NA
WP_011425248.1\|2058009_2058906_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_042119242.1\|2058896_2060600_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_166486899.1\|2060797_2061898_-	nucleotide-binding protein	NA	NA	NA	NA
WP_042118388.1\|2062505_2062703_+	hypothetical protein	NA	NA	NA	NA
WP_011425251.1\|2062702_2063347_+	DNA methyltransferase	A0A2K9VH43	Faecalibacterium_phage	1.4e-29	34.1
WP_073990379.1\|2063622_2063985_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042118390.1\|2064144_2064603_+	discoidin domain-containing protein	NA	NA	NA	NA
WP_042118393.1\|2064595_2065033_+	hypothetical protein	NA	NA	NA	NA
WP_011425253.1\|2065041_2066376_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	9.7e-17	25.1
WP_011425254.1\|2066372_2067086_+	HAD family hydrolase	NA	NA	NA	NA
WP_011425255.1\|2067096_2068452_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_042118396.1\|2068471_2069320_+	EamA family transporter	NA	NA	NA	NA
WP_011425257.1\|2069513_2069810_-	hypothetical protein	NA	NA	NA	NA
WP_011425259.1\|2071624_2072701_-	hypothetical protein	NA	NA	NA	NA
WP_166486900.1\|2072863_2073004_-	hypothetical protein	NA	NA	NA	NA
WP_011425260.1\|2072997_2073300_-	hypothetical protein	NA	NA	NA	NA
WP_011425261.1\|2073296_2074172_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_011425262.1\|2075175_2075688_+	hypothetical protein	NA	NA	NA	NA
WP_166486901.1\|2076165_2076678_+	hypothetical protein	NA	NA	NA	NA
WP_042118403.1\|2077469_2077670_+	hypothetical protein	NA	NA	NA	NA
WP_011425264.1\|2077666_2078002_+	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	1.3e-15	42.1
WP_011425265.1\|2078074_2078833_-	hypothetical protein	NA	NA	NA	NA
WP_042118405.1\|2078983_2079343_-	hypothetical protein	NA	NA	NA	NA
WP_011425266.1\|2079351_2079666_-	hypothetical protein	NA	NA	NA	NA
WP_042118409.1\|2079764_2080004_-	hypothetical protein	NA	NA	NA	NA
WP_011425267.1\|2080279_2080837_+	recombinase family protein	NA	NA	NA	NA
WP_042118412.1\|2081071_2085139_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042118415.1\|2085356_2086772_-	SAVED domain-containing protein	NA	NA	NA	NA
WP_011425270.1\|2086768_2087230_-	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_011425271.1\|2087204_2088893_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_166486902.1\|2088889_2089906_-	nucleotidyltransferase	NA	NA	NA	NA
WP_011425273.1\|2090222_2090729_-	hypothetical protein	NA	NA	NA	NA
WP_042118420.1\|2090885_2091749_-	hypothetical protein	NA	NA	NA	NA
WP_011425275.1\|2091765_2092512_-	hypothetical protein	NA	NA	NA	NA
WP_166486903.1\|2092637_2092814_+	hypothetical protein	NA	NA	NA	NA
WP_011425276.1\|2093046_2094999_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_166486904.1\|2095633_2096098_+	hypothetical protein	NA	NA	NA	NA
WP_011425278.1\|2096192_2096582_-	hypothetical protein	NA	NA	NA	NA
WP_082239844.1\|2096647_2098312_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_011425280.1\|2098670_2098907_-	hypothetical protein	NA	NA	NA	NA
WP_011425281.1\|2099071_2099368_-	hypothetical protein	NA	NA	NA	NA
WP_011425282.1\|2099718_2102832_+	hypothetical protein	NA	NA	NA	NA
WP_166486905.1\|2103377_2104748_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011053348.1\|2104913_2105297_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	5.4e-05	51.1
WP_011053349.1\|2105293_2105638_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-10	31.6
WP_011053350.1\|2105711_2107304_+\|transposase	IS66-like element ISRel15 family transposase	A0A218MNE7	uncultured_virus	1.3e-52	33.1
WP_187331724.1\|2107291_2107453_-	hypothetical protein	NA	NA	NA	NA
WP_011425284.1\|2107858_2109424_-\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.4e-112	44.4
2113139:2113187	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2205656 : 2215824

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011425373.1\|2205656_2208578_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.1
WP_011425374.1\|2208862_2209378_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	5.5e-45	72.9
WP_011425375.1\|2209460_2210108_-	MarC family protein	NA	NA	NA	NA
WP_011425376.1\|2210345_2213171_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	5.1e-76	41.9
WP_166486907.1\|2213506_2213662_-	hypothetical protein	NA	NA	NA	NA
WP_041678644.1\|2213755_2214103_-	hypothetical protein	NA	NA	NA	NA
WP_011425379.1\|2214192_2214687_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.1e-23	36.5
WP_011425380.1\|2214713_2215286_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.5e-43	54.7
WP_011425381.1\|2215314_2215824_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.3e-45	58.8

DBSCAN-SWA_6

3169970 : 3232107

Bacillus_phage(20.0%)

protease,transposase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011426268.1\|3169970_3170693_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_011426270.1\|3171120_3171432_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_011426271.1\|3171754_3172858_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_011426272.1\|3172873_3173947_-	hypothetical protein	NA	NA	NA	NA
WP_020921911.1\|3174139_3174631_+	MaoC family dehydratase	NA	NA	NA	NA
WP_011426274.1\|3174627_3175095_+	MaoC family dehydratase	NA	NA	NA	NA
WP_020921912.1\|3175113_3175656_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-33	43.8
WP_011426276.1\|3175770_3176655_-	cytochrome c1	NA	NA	NA	NA
WP_011426277.1\|3176680_3177961_-	cytochrome b N-terminal domain-containing protein	NA	NA	NA	NA
WP_011426278.1\|3177975_3178554_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_011426279.1\|3178840_3179773_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_011426280.1\|3179728_3181642_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.0e-27	26.0
WP_011426281.1\|3181804_3182035_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_011426282.1\|3182126_3183983_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.3e-34	30.9
WP_011426283.1\|3184367_3184829_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_011426284.1\|3185026_3186673_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_011426285.1\|3186676_3186937_-	hypothetical protein	NA	NA	NA	NA
WP_011426286.1\|3187457_3188369_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_011426287.1\|3188471_3188735_+	hypothetical protein	NA	NA	NA	NA
WP_011426288.1\|3188848_3189034_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_042118840.1\|3189104_3190358_-\|tRNA	CCA tRNA nucleotidyltransferase	K4JS34	Caulobacter_phage	6.1e-45	34.8
WP_011426290.1\|3190354_3191005_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_011426291.1\|3191001_3191625_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_041678717.1\|3191782_3192793_+	MoxR family ATPase	NA	NA	NA	NA
WP_020921924.1\|3192806_3193727_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_011426294.1\|3193723_3196537_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_011426295.1\|3196538_3198611_+	membrane protein	NA	NA	NA	NA
WP_011053350.1\|3198808_3200401_-\|transposase	IS66-like element ISRel15 family transposase	A0A218MNE7	uncultured_virus	1.3e-52	33.1
WP_011053349.1\|3200474_3200819_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	5.0e-10	31.6
WP_011053348.1\|3200815_3201199_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	5.4e-05	51.1
WP_073990388.1\|3201537_3202080_-	N-acetyltransferase	NA	NA	NA	NA
WP_011426298.1\|3202317_3203304_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_020921929.1\|3203310_3203811_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_042118845.1\|3203860_3204769_+	metallophosphoesterase	NA	NA	NA	NA
WP_011426301.1\|3204927_3205488_+	hypothetical protein	NA	NA	NA	NA
WP_011426302.1\|3205672_3206182_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_042118846.1\|3206183_3207023_+	anti-sigma factor	NA	NA	NA	NA
WP_042118852.1\|3207365_3209084_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_011426305.1\|3209421_3210651_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_011426306.1\|3210801_3211386_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-30	38.4
WP_011426307.1\|3211617_3212379_+	DUF2076 domain-containing protein	NA	NA	NA	NA
WP_011426308.1\|3212511_3212976_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.5e-28	48.8
WP_011426309.1\|3212975_3213890_-	CDF family cation efflux transporter EmfA	NA	NA	NA	NA
WP_011426310.1\|3214086_3214758_-	hypothetical protein	NA	NA	NA	NA
WP_011426311.1\|3214772_3215012_-	hypothetical protein	NA	NA	NA	NA
WP_011426312.1\|3215234_3217424_-	anthranilate synthase	NA	NA	NA	NA
WP_011426313.1\|3217692_3219951_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_011426314.1\|3221470_3223150_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_042118858.1\|3223738_3225418_-	hypothetical protein	NA	NA	NA	NA
WP_011426316.1\|3225724_3226450_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_011426318.1\|3226976_3228107_-	DUF2333 family protein	NA	NA	NA	NA
WP_011426319.1\|3228245_3229319_-	hypothetical protein	NA	NA	NA	NA
WP_011426320.1\|3229391_3229994_-	thymidine kinase	G9I9I2	Pseudomonas_phage	6.5e-53	55.9
WP_011426321.1\|3230230_3231187_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011426322.1\|3231261_3232107_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

DBSCAN-SWA_7

3933041 : 3943057

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011426921.1\|3933041_3933752_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.5e-48	46.9
WP_020922355.1\|3933751_3934108_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_011426923.1\|3934104_3934833_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.1e-41	37.9
WP_011426924.1\|3934838_3936062_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	1.2e-13	29.3
WP_011426925.1\|3936161_3937136_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.1e-138	75.1
WP_042119041.1\|3937311_3939516_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.1e-209	51.1
WP_011426927.1\|3939494_3939899_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A249Y1D6	Staphylococcus_phage	2.1e-07	33.1
WP_010068756.1\|3939915_3940137_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.8e-16	52.1
WP_011426928.1\|3940810_3943057_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.6e-126	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_004041

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

79461 : 140519

Staphylococcus_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004675992.1\|79461_80562_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.1e-37	33.0
WP_008534300.1\|80676_81363_-	TRSP domain-containing protein	NA	NA	NA	NA
WP_029875549.1\|84984_86496_+	tyrosinase family protein	NA	NA	NA	NA
WP_011053334.1\|86527_86983_+	hypothetical protein	NA	NA	NA	NA
WP_004668604.1\|87465_88995_+	hypothetical protein	NA	NA	NA	NA
WP_011053336.1\|89656_92047_+	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_026188835.1\|92756_93092_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004668612.1\|93688_94369_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011053340.1\|94683_95568_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-21	29.2
WP_004668619.1\|95645_96074_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_004668622.1\|96151_96535_+	hypothetical protein	NA	NA	NA	NA
WP_004668623.1\|96531_97428_+	alpha/beta hydrolase	G1JV20	Mycobacterium_phage	2.3e-06	29.4
WP_008534334.1\|97453_98620_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011053341.1\|98711_100265_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.1e-15	29.1
WP_008534336.1\|100261_101236_+	ABC transporter permease	NA	NA	NA	NA
WP_004668632.1\|101247_102267_+	ABC transporter permease	NA	NA	NA	NA
WP_008534338.1\|102290_103778_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_004668636.1\|104062_104248_+	hypothetical protein	NA	NA	NA	NA
WP_076612137.1\|105959_106907_+\|transposase	IS630-like element ISRel6 family transposase	S5VXX4	Leptospira_phage	1.1e-09	23.0
WP_011053346.1\|107229_109239_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	8.9e-06	82.4
WP_004673279.1\|109760_109946_+	hypothetical protein	NA	NA	NA	NA
WP_008534360.1\|110016_111051_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011053348.1\|111485_111869_+\|transposase	transposase	NA	NA	NA	NA
WP_011053349.1\|111865_112210_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011053350.1\|112283_113876_+\|transposase	IS66-like element ISRel15 family transposase	A0A218MNE7	uncultured_virus	1.3e-52	33.1
WP_011053351.1\|114752_115502_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011053352.1\|115713_118227_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.6e-12	33.5
WP_008534366.1\|118411_119611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004673285.1\|120042_122601_+	EAL domain-containing protein	G3MA91	Bacillus_virus	3.4e-26	34.8
WP_011053353.1\|122953_123838_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_004673287.1\|123850_124978_+	zinc-dependent alcohol dehydrogenase family protein	A0A0K0KVL7	Prochlorococcus_phage	1.7e-30	30.1
WP_004673291.1\|125892_126582_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_008534369.1\|126711_127941_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004671535.1\|129657_130425_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.8e-24	36.1
WP_008534378.1\|130559_131069_+	flavin reductase family protein	NA	NA	NA	NA
WP_004671531.1\|131141_131549_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011053356.1\|131609_132731_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004671529.1\|132854_134024_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_026188837.1\|134101_135319_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_010029274.1\|135330_135729_+	GFA family protein	NA	NA	NA	NA
WP_004671524.1\|136089_136608_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_004671523.1\|136624_137905_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-96	48.7
WP_011053358.1\|138181_138568_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.9e-05	37.1
WP_011053359.1\|138564_138918_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011053360.1\|138986_140519_+\|transposase	IS66-like element ISRel8 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.4e-96	39.5

DBSCAN-SWA_2

204822 : 276866

Paenibacillus_phage(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011053406.1\|204822_205989_+\|transposase	IS110-like element ISRel9 family transposase	NA	NA	NA	NA
WP_011053407.1\|206380_207118_+	hypothetical protein	NA	NA	NA	NA
WP_011053408.1\|207124_208546_-\|transposase	ISNCY-like element ISRel10 family transposase	NA	NA	NA	NA
WP_008536571.1\|208719_208923_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_042120140.1\|209597_210326_+	carbonic anhydrase	NA	NA	NA	NA
WP_011053410.1\|210933_211866_-	cation transporter	NA	NA	NA	NA
WP_086005066.1\|212448_213212_-\|transposase	IS5-like element ISRel11 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.0e-19	41.7
WP_008536565.1\|213383_213878_-	nitrogen fixation protein NifX	NA	NA	NA	NA
WP_011053414.1\|213874_215230_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA
WP_011053415.1\|215239_216730_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA
WP_004677342.1\|216788_218330_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_011053416.1\|218453_219956_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_004675840.1\|220063_220957_-	nitrogenase iron protein	NA	NA	NA	NA
WP_164736476.1\|226446_226713_+	hypothetical protein	NA	NA	NA	NA
WP_011053426.1\|228438_229029_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_004678571.1\|229196_229451_-	ferredoxin	NA	NA	NA	NA
WP_042120111.1\|229471_230650_-	cytochrome P450	NA	NA	NA	NA
WP_010009909.1\|230956_231130_+	hypothetical protein	NA	NA	NA	NA
WP_011053428.1\|231726_232443_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_004678566.1\|233325_233865_+	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	3.9e-49	63.7
WP_011053429.1\|233940_235392_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_004678546.1\|235920_236238_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_004678544.1\|237207_238404_+	cysteine desulfurase NifS	H7BUW1	unidentified_phage	2.1e-34	34.9
WP_004678534.1\|238743_239127_+	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA
WP_004678528.1\|239303_240152_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_004678527.1\|240167_241277_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_008536548.1\|241286_242594_+	FAD-binding protein	NA	NA	NA	NA
WP_004678523.1\|242606_242906_+	ferredoxin family protein	NA	NA	NA	NA
WP_011053431.1\|243126_244815_+	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_011053432.1\|245028_246507_+	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA
WP_008536545.1\|246541_246748_+	4Fe-4S binding protein	A0A1B1IWY9	uncultured_Mediterranean_phage	3.7e-08	51.6
WP_008536544.1\|246812_247130_+	nitrogen fixation protein NifZ	NA	NA	NA	NA
WP_004678514.1\|247134_247347_+	putative nitrogen fixation protein NifT	NA	NA	NA	NA
WP_008536543.1\|247377_248316_+	SIR2 family protein	NA	NA	NA	NA
WP_008536542.1\|248760_249864_-	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_004671987.1\|251179_251686_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_166486966.1\|252196_253072_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	5.4e-08	31.7
WP_010069248.1\|253589_254093_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011053437.1\|256721_258791_+	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	7.7e-05	24.3
WP_016737501.1\|260292_260643_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-27	53.3
WP_011053439.1\|260639_261047_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_008536527.1\|261018_261309_+	hypothetical protein	NA	NA	NA	NA
WP_008536526.1\|261341_261458_+\|transposase	transposase	NA	NA	NA	NA
WP_008536525.1\|262522_263452_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_011053440.1\|263640_264774_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_008536520.1\|264793_265696_-	hypothetical protein	NA	NA	NA	NA
WP_011053441.1\|265692_267246_-	hypothetical protein	NA	NA	NA	NA
WP_011053442.1\|268021_269365_-	cytochrome P450	NA	NA	NA	NA
WP_011053443.1\|269364_270207_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-15	30.2
WP_011053444.1\|270193_271795_-	cytochrome P450	NA	NA	NA	NA
WP_011053445.1\|271800_273081_-	cytochrome P450	NA	NA	NA	NA
WP_170964898.1\|273149_273413_-	cytochrome	NA	NA	NA	NA
WP_011053446.1\|275606_276866_-\|transposase	IS110-like element ISRel25 family transposase	A0A1S7J231	Thermus_phage	2.3e-12	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_007762

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10792 : 103386

Enterobacteria_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011427313.1\|10792_12319_-\|transposase	IS21-like element ISRel16 family transposase	K4I413	Acidithiobacillus_phage	7.2e-117	44.2
WP_166486932.1\|12687_13545_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_042119506.1\|13931_14207_-	hypothetical protein	NA	NA	NA	NA
WP_011427315.1\|14214_15201_-	caspase family protein	NA	NA	NA	NA
WP_042119579.1\|15201_15573_-	TIR domain-containing protein	NA	NA	NA	NA
WP_176539351.1\|15775_15913_-	hypothetical protein	NA	NA	NA	NA
WP_011427318.1\|16292_17837_-	E2 ligase fold family C protein	NA	NA	NA	NA
WP_063503095.1\|17840_18272_-	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_011427320.1\|18325_18943_-	hypothetical protein	NA	NA	NA	NA
WP_011427321.1\|18939_19245_-	DUF2604 domain-containing protein	NA	NA	NA	NA
WP_166486933.1\|19619_21344_-	amidohydrolase family protein	NA	NA	NA	NA
WP_165779395.1\|21379_21610_+	hypothetical protein	NA	NA	NA	NA
WP_165779394.1\|21837_22311_+	hypothetical protein	NA	NA	NA	NA
WP_011427324.1\|22280_23771_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_042119508.1\|23981_24968_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_011427326.1\|25122_26454_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_086005040.1\|28300_29026_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011427331.1\|30218_32267_+	bifunctional aldolase/short-chain dehydrogenase	NA	NA	NA	NA
WP_042119512.1\|34929_35160_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_011427337.1\|35960_37169_+	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	2.0e-90	45.1
WP_011427339.1\|38448_39711_+	plasmid replication protein RepCa2	L7TKN6	Rhizobium_phage	1.1e-14	25.4
WP_042119516.1\|40647_40932_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_011427344.1\|43909_44521_+	hypothetical protein	NA	NA	NA	NA
WP_133118182.1\|44865_45126_-	hypothetical protein	NA	NA	NA	NA
WP_011427346.1\|45178_47689_+	two-component system VirA-like sensor kinase	A0A1V0SGX0	Hokovirus	2.0e-07	25.3
WP_011427347.1\|47888_48626_+	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
WP_011427348.1\|48765_49092_+	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_011427349.1\|49091_51461_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_011427350.1\|51477_52140_+	pilin minor subunit VirB5	NA	NA	NA	NA
WP_011427351.1\|52238_53126_+	type IV secretion system protein	NA	NA	NA	NA
WP_011427352.1\|53155_53323_+	type IV secretion system lipoprotein VirB7	NA	NA	NA	NA
WP_042119589.1\|53309_54023_+	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_011427354.1\|54019_54901_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_011427355.1\|54897_56001_+	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_011427356.1\|56041_57076_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_011427357.1\|57173_57914_+	response regulator	NA	NA	NA	NA
WP_011427358.1\|57995_58613_-	conjugal transfer protein VirC2	NA	NA	NA	NA
WP_011427359.1\|58615_59311_-	conjugal transfer ATPase VirC1	A0A0A8IL09	Aurantimonas_phage	1.9e-08	26.7
WP_011427363.1\|64326_64524_+	type IV secretion system effector chaperone VirE1	NA	NA	NA	NA
WP_011427364.1\|64527_66195_+	type IV secretion system single-stranded DNA binding effector VirE2	NA	NA	NA	NA
WP_011427365.1\|66260_68216_+	virulence VirE3 protein	NA	NA	NA	NA
WP_166486934.1\|68247_68526_-	hypothetical protein	NA	NA	NA	NA
WP_011427368.1\|71658_72105_+	T-DNA border endonuclease subunit VirD1	NA	NA	NA	NA
WP_011427369.1\|72132_73377_+	T-DNA border endonuclease VirD2	NA	NA	NA	NA
WP_011427370.1\|75278_77279_+	type IV secretion system ATPase VirD4	NA	NA	NA	NA
WP_042119525.1\|77703_78849_-\|transposase	IS4-like element ISRel1 family transposase	NA	NA	NA	NA
WP_003563080.1\|80246_81128_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.6e-52	46.3
WP_003563080.1\|86868_87750_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.6e-52	46.3
WP_009996987.1\|90836_91199_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_009996986.1\|91195_91543_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.6e-27	53.9
WP_009996985.1\|91615_93181_+\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.4
WP_011427378.1\|93362_94322_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011427379.1\|96240_97719_+	trehalose-6-phosphate synthase	NA	NA	NA	NA
WP_011427380.1\|98215_99271_+	NAD/NADP octopine/nopaline dehydrogenase family protein	NA	NA	NA	NA
WP_011427381.1\|100325_100631_+	hypothetical protein	NA	NA	NA	NA
WP_086005037.1\|101210_102312_+\|transposase	IS3-like element ISRel21 family transposase	A0A1B1P773	Bacillus_phage	2.7e-12	29.0
WP_011427384.1\|102549_103386_+\|transposase	IS5-like element ISRel20 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

107425 : 149093

Stx2-converting_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009996985.1\|107425_108991_-\|transposase	IS66-like element ISRel19 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.4
WP_009996986.1\|109063_109411_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.6e-27	53.9
WP_166486935.1\|109407_109752_-\|transposase	transposase	NA	NA	NA	NA
WP_011427389.1\|109975_111610_-\|transposase	IS66-like element ISRel24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-97	43.1
WP_011427391.1\|112018_112426_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011427392.1\|112941_114840_+	potassium transporter Kup	A7J6G4	Paramecium_bursaria_Chlorella_virus	1.8e-64	28.9
WP_165779457.1\|117413_117587_-	hypothetical protein	NA	NA	NA	NA
WP_011427397.1\|117734_118640_-	hypothetical protein	NA	NA	NA	NA
WP_183741011.1\|119260_119437_-	hypothetical protein	NA	NA	NA	NA
WP_011427400.1\|119917_120226_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_165779456.1\|120548_120713_+	hypothetical protein	NA	NA	NA	NA
WP_042119538.1\|121041_121533_+	hypothetical protein	NA	NA	NA	NA
WP_011427403.1\|122541_124221_-	hypothetical protein	NA	NA	NA	NA
WP_011427406.1\|126661_127819_+	hypothetical protein	NA	NA	NA	NA
WP_103671223.1\|128362_129940_-	hypothetical protein	NA	NA	NA	NA
WP_037145433.1\|131835_132033_+	hypothetical protein	NA	NA	NA	NA
WP_011427411.1\|132022_134086_+	recombinase family protein	E9P5U5	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	5.2e-09	24.0
WP_011053446.1\|134451_135711_+\|transposase	IS110-like element ISRel25 family transposase	A0A1S7J231	Thermus_phage	2.3e-12	34.0
WP_166486931.1\|136966_137434_+	hypothetical protein	NA	NA	NA	NA
WP_077991700.1\|138284_138650_+	pilin major subunit VirB2	NA	NA	NA	NA
WP_183740805.1\|138646_138844_+	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_183740826.1\|138746_139334_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_011427416.1\|139727_140234_+	hypothetical protein	NA	NA	NA	NA
WP_011427421.1\|144049_144502_+	RICIN domain-containing protein	NA	NA	NA	NA
WP_011427422.1\|146217_147591_+\|transposase	ISNCY-like element ISRel26 family transposase	A1YTJ2	Porcine_endogenous_retrovirus	1.8e-05	26.4
WP_011053406.1\|147926_149093_-\|transposase	IS110-like element ISRel9 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007761

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_004041

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_007762

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection