CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014149	Planctopirus limnophila DSM 3776 plasmid pPLIM01, complete sequence	0 crisprs	NA	0	0	1	0
NC_014148	Planctopirus limnophila DSM 3776, complete sequence	3 crisprs	DinG,cas3,Cas9_archaeal,cas2,cas1,csa3,RT,WYL,cas8u2,cas7,cas5u	1	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2647 : 9982

Bacillus_phage(14.29%)

capsid,protease,portal,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013112486.1\|2647_2950_+	HNH endonuclease	Q38456	Bacillus_phage	2.6e-18	49.5
WP_013112487.1\|3081_3564_+\|terminase	phage terminase small subunit P27 family	H9YSH2	environmental_Halophage	9.2e-10	30.8
WP_013112488.1\|3508_5182_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	2.8e-106	39.4
WP_013112489.1\|5178_6813_+\|portal	phage portal protein	A0A142K630	Streptomyces_phage	4.5e-56	31.7
WP_148227395.1\|6742_7429_+\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	1.0e-30	43.4
WP_013112491.1\|7587_8910_+\|capsid	phage major capsid protein	A0A0F7L2V9	uncultured_marine_virus	7.3e-49	33.0
WP_013112492.1\|9042_9348_+	hypothetical protein	NA	NA	NA	NA
WP_013112493.1\|9394_9982_+	hypothetical protein	I3UM02	Rhodobacter_phage	4.0e-15	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_014148

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CRISPR-Cas detection and classification

Crispr_ID: NC_014148_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014148_1

673934-674034

Orphan

Consensus_repeat	Method
CTCTCAACCGGCAGCCCCTGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014148_1

>merge|NC_014148|1|673934-674034|CRISPRCasFinder
CTCTCAACCGGCAGCCCCTGGTTCAGTTTGCAGGGCCGCCTCCGACGCAGGGTCAACGGGAGTTCCATCAACCAATGACTCTCAACCGGCAGCCTCTGGTT

>NC_014148|1|1|673934-674034|CRISPRCasFinder
CTCTCAACCGGCAGCCCCTGGTT	CAGTTTGCAGGGCCGCCTCCGACGCAGGGTCAACGGGAGTTCCATCAACCAATGA
CTCTCAACCGGCAGCCTCTGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014148.1\|WP_013108821.1\|679095_680385_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277318
NC_014148.1\|WP_041401003.1\|667173_669063_+\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013108824.1\|682341_682698_+\|YciI-family-protein	unknown	unknown	gnl\|CDD\|226318
NC_014148.1\|WP_148226952.1\|669699_670416_-\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_041401008.1\|675538_675979_-\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013108809.1\|665221_666121_+\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013108822.1\|680414_681005_-\|rRNA-methylase	unknown	unknown	gnl\|CDD\|377744
NC_014148.1\|WP_013108805.1\|658304_659051_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|234625
NC_014148.1\|WP_013108806.1\|659098_660037_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380192
NC_014148.1\|WP_013108826.1\|684099_685176_-\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NC_014148.1\|WP_013108808.1\|663252_664737_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
NC_014148.1\|WP_013108819.1\|676866_678684_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_014148.1\|WP_013108825.1\|682756_684046_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NC_014148.1\|WP_013108812.1\|669009_669612_-\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013108810.1\|666339_666804_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368199
NC_014148.1\|WP_013108823.1\|681246_682200_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381310
NC_014148.1\|WP_013108814.1\|670463_673310_-\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|226685
NC_014148.1\|WP_013108818.1\|676104_676803_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|376354
NC_014148.1\|WP_013108807.1\|660003_662922_-\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013108816.1\|674210_675509_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355

Protein	Function_ID	Function_description	E-value
NC_014148.1\|WP_013108821.1\|679095_680385_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.09068e-15
NC_014148.1\|WP_013108826.1\|684099_685176_-\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	2.74991e-49
NC_014148.1\|WP_013108824.1\|682341_682698_+\|YciI-family-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	2.98995e-35
NC_014148.1\|WP_013108822.1\|680414_681005_-\|rRNA-methylase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	4.45447e-48
NC_014148.1\|WP_013108805.1\|658304_659051_+\|dethiobiotin-synthase	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.58796e-64
NC_014148.1\|WP_013108806.1\|659098_660037_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380192	NF033188, internalin_H, InlH/InlC2 family class 1 internalin. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin H (InlH), or internalin C2, two class 1 (LPXTG-type) internalins that are closely related, one apparently derived from the other through a recombination event.	1.55498e-14
NC_014148.1\|WP_013108808.1\|663252_664737_-\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	0.000255105
NC_014148.1\|WP_013108819.1\|676866_678684_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.83587e-84
NC_014148.1\|WP_013108825.1\|682756_684046_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	9.47083e-89
NC_014148.1\|WP_013108823.1\|681246_682200_+\|aldo/keto-reductase	gnl\|CDD\|381310	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR). Bacillus subtilis YhdN, also called general stress protein 69 (GSP69), is a founding member of aldo-keto reductase family 11 member B1 (AKR11B1). It acts as an aldo-keto reductase (AKR) that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor. Escherichia coli YdjG is a founding member of aldo-keto reductase family 11 member B2 (AKR11B2). It catalyzes the NADH-dependent reduction of methylglyoxal (2-oxopropanal) in vitro. It may play some role in intestinal colonization.	4.60057e-125
NC_014148.1\|WP_013108810.1\|666339_666804_-\|hypothetical-protein	gnl\|CDD\|368199	pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.	0.000114729
NC_014148.1\|WP_013108814.1\|670463_673310_-\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	1.25338e-39
NC_014148.1\|WP_013108818.1\|676104_676803_+\|redoxin-domain-containing-protein	gnl\|CDD\|376354	pfam00578, AhpC-TSA, AhpC/TSA family. This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).	1.33125e-14
NC_014148.1\|WP_013108816.1\|674210_675509_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0

>NC_014148.1|WP_013108814.1|670463_673310_-|thioredoxin-fold-domain-containing-protein
MPYAATSQPAQTDHCDSKHADYSNHSEIDCLDFHRPSVVKGRHNTSHGLWQSLWKLSAVVLAVLVFPITAQAQFDDLFGDSAGDSLLGGAAAKPEVSAQLILLPEQASGLQAQHLQAQLSVTVVLPEGHYIYDVQGKFEGRTQIRTKLPEGVTAAGAFVSAKPPQKIFEPLFGVDLFKLHDSATWTQVLNIAPTVDLKNLVISGGLEGQYCSAGEGGQCLPIIPAIKFSTKLEGNIPERMAAKASTTTTVEQPAPAQMLPFRVTERLKRGVKPQPIEFTAQLTPENAKPGEKVELVLTAKIDPKYHTFSMTQPDGFGGSATVVDFEQLNGLSEAGPFVADHPHEIEPGAGGPLEVYHDRVTWTKPFVVNAGQTPGAYGLKAIVHSQACTQGSCVPMPKFKLALGMQEPSRAGVEALPQERGSPAETGNTKAPVPPEESTRESTTGTAETSASQAGALSGVTFWEDDGDAQEESSAAAGTLGYLLTAFLAGWLALLTPCAFPMVPITVGFFLKQGHGKSVGLAVVYCLAIIGTFTLLGVGLSLIFGATFLTQLANNPWMNFAIGAIFVAFGLSMLGLFEIQPPSWLLTYTANQEAAGGYLGVIFMALTFTLTSFTCTFPVAGTILVAASQGNVFWPILGMLAFSTAFAMPFFLLALFPSMLRKLPKSGGWLFTLKVVLGFVEIGAAIKFFSVADLSLNPQPMLFDFAFVMVAWSVLAITAGLYLLGIFHLSHDQPQDRISPLQALAGTTFLGLSLFLMVGVLTPEKSGGALMPQILAFAPPQLKQGFKETEELGPVMVHDGIPFALDVNRALSLAKSKQQPLFFDFTGVNCVNCRLMEQKMKLPDNHSRLERFLATQLFADRVPHITDADYAESLRDRNIDLQVKWFGDVSLPSYAVVSPDGKTILAVYKGLERKEGEFAAFLDKGWNRFEKWKAKQVASKEPASVERR
>NC_014148.1|WP_148226952.1|669699_670416_-|hypothetical-protein
MLPGTTATVRNELSRKVILGQIVSLVTSQQSMARQEADHDDLFSEAIALTSRALWKRIRPDHPANCQHSDDLDDPAPARLQSVKEILIGTRANDWLSIYWDQSWMVQFNEMNQLRRAYVEPCLYRAQGGTLSRLTRHRNPHETSLLRHDLNEAELHSFLASNSQQLTETFALLDCLESGEFKTFQLASFVHPIDSIQPEVAEQPETIHSTLTARSLVARLGQICMQKLVIAEPPRGRH
>NC_014148.1|WP_013108812.1|669009_669612_-|hypothetical-protein
MWNQFRDEIYALYLLSLKCLMNSPTSNFSTDDEERLEAVYPSIACTTIGKYLGKLYESLPHITPRIRLSYLVWIPPTWPIAIIAYVWLKLRGVRYVVTTSGVVIETILTRHIVTQIPWSEVTEIQVDPASFQSFYRSSDIVIRSRAAAEPLRLHAVPFADRFRQLLQEAYRADQNTARAQAQISNRARARQLASAIPPQE
>NC_014148.1|WP_041401003.1|667173_669063_+|hypothetical-protein
MPLHAGFVMLLAGLMVGFDGISSAEAGIWPWSRKKEEVSKPKDHPQAPPPDAGSLNAGIRNLLLDAHAAYQKGDLSTALRLAQRAEKLAKASQQVAGKPNELEGTASRFVVEITRQLEEKHKSLPVQEASKSPQVAATPKTSPDAGKTHSEKATTEPAPTAVSVKTSEVPRETQVATASKSEDSADKAAVVPSAEIDADQGLRTGNLLLQSTAPVMESISSSSVSSKTMVTRSGPENFQVKTEEPGTDFPDWAQDVRPAQGKGERLAEASMAAEEKTAPLAENLKSLNQNSGVTHKNSPKDVPSASTSRSMDFQSEQPEQVAAKLEKATSKPVQNDLPTAHDLPAWALAAEPDEEQEARVSVDFGTSTVDQETPAGPSSKNISRSVPVPPQVQAEVVSLREVVGEAQLPGWREITPMDIHQPARLDPLLRMQVEMAAAATRDLRTRILDAPRLINSQARQVDHVAQGTITLTSNSRQVTPTAIPSSHEVSGSSMAGDQYAALRPEGDQESRSPLSVIAVASSTTDSTNRTVVNAQPLSEPVVTSSVANRAWASQVVVHTHEQNLRDNSSLVAESTAQSESSQARLVETAIHWLRSHPVRHRWMMAAVALSVFSLLWWYGGRQLPGSRSV
>NC_014148.1|WP_013108810.1|666339_666804_-|hypothetical-protein
MAGRRLDQRRMAEAAEARGVDETAAPKKRATKKAAATPRVRKVKEKVQARKRLLWVVFNGSMKEEARFPYDQYAEAEERLEALRQKSKKLYFIQPVKELIGDGAPVASGALAISDDPEQAAALEELELEDEEELELEEEEDEEEEEEEEEDDDE
>NC_014148.1|WP_013108809.1|665221_666121_+|hypothetical-protein
MPPSSHRMVLKFPQRWIEVLAQLGNWEKSSHGYLVPPAAWLAVHPATALGCSEISAAEIPPGSSANWSKGTVLLQSWMAALIEANGHQVAGRLETTQPMVEVQGIECDDWALSAICPAEYWLALTHEIQQKEHPLKPQERSALRQSIRDFLRIAIPPESPQVQQVALCAGWLEVLGLSEESHQESQSIEGLGQPPHGDYWHAIHHRREPDPGNASYWFRRISKHRLLQELEQLLPVANAAFPEKSSHTPVSSWNQATLLYRWEEFPEDDLPEQRYGRLLQWLEMSALIAANASSTHVLR
>NC_014148.1|WP_013108808.1|663252_664737_-|hypothetical-protein
MEAILRGYDVNEPTWFYLSLLLIIAVFFKFDRIWSLRNFDLALLLLLAPGLLLARYSEATVAFGYAWLFLVTGILLVRLLADGFFTRRPRLEQNLNVSGMAFLCVSALAFQATKVMTLEPHAAVIETAHRADGLLKRQDGTGAAGSTSLASLNDDLSPGHSSHQISPSNINPDTRTQPENLSESNSQNQAAKTELAEQDREDKPVESGPASMLLATPIVQMTGGVTIWTTRVLAILAHLATCLGLIAVGRWHFSDTRLGLAMATLYLLLPVTAFDVNKVTHLLPAALVVWAFASYKTPSVAGVLLGLACGSLFFAIFLLPVWIAFYWKRGAGRFSIALGAVACVMLLCLMMTAADSHSLTRQIVGSIDWSVLKFDSGTGKGFWSQYDQAYRIPVFAAFMIMLTVITFWPLRKNLEHLMAHSAAIIVATQFWYPHEGGVYILWYLPVMLIVMFRPRLAHLPPRSHEEVSLLASDSTPRSRSESAASVSWRSQLYR
>NC_014148.1|WP_013108807.1|660003_662922_-|hypothetical-protein
MSFDLRLFPLTFCILIWSHAASVWAAEAEFTARWSDGSTSRPAQLRDWNDPAAEPRLGDLRLFEPSNPVVSLWRSPVPPAARRGIRVELSGGDRLAGEVLGWSNGLEDPFETMPAYFLVRPLAPVYPPEARHQQTIRVQANHVRRIVWEAMAGETYQPGTVWLRNGGRISFRTCRWSNSAVNLLAATGLKEIPLSDLAEIHLPLDDEWQRFFETAAALTPNGKGRWIRLETMDGSLLTTSTQRLQGRHYGDRNRQADWYQLIQPAWALDPLWIRFPQVIGWQTWIVTEPPLSWFYPAEIVYSPAFGKSWSPNWNSSVNGTRLTTGENFSQNGWGVFGTSQITFQIPDFVEGLRTAWGFDPAAQKRGCASATIRVRAGETTSTLFESGEKSGAESAVHTDWISIPTSAGGPRQLVLGTDMQANSSTPGADPLDLRDFTNWMEPQLRLNATTAGEMTSAAAYQLISGWSGWSLTGWNQNGRVAAPVAVRNQLENWNTKEPRFRSLARLGGETLLLTRRLQLKSTDRWIVIHAAREAETQAQIYCAVRLNGEGVGLATLPKREGAIDPQPVMFPIPALAGQTASCEIVLFTDDKAAEFDFRGVALTPHQPGVLPVFDEQAEFASLLTSGEGTARISPDLPYSGQVSLELRPTDRSGPTLYNQEIPIREHPKLGEFRFITFAWRKIDDDKKSRETIRLMIAHEGRLGNEIAEAALDRLRGRPAITRTGGKPLEDRGMRHGYTYDAGDAKQSAGAPLRVDWSLPRNWQWVSRDLFSDFGSISLTGFGFATTGETAAYFDSITLARTPDDVTRIRQKLQASKESPKLPEGIQEIVTQEEDYSRLLKLVAPQFVAMNSQGGLHWARQYAGENDVVRSHPLEANRPFRMFAHVTRTGNRPVTLTGKVRAENDRDFKLVILVQGRSIEERIISGKDQWVELNIDLTPYTQEKLPLSVEVRHEGHNWDNESAWWKSLQIQGL
>NC_014148.1|WP_013108806.1|659098_660037_-|leucine-rich-repeat-domain-containing-protein
MVEITSNPGTLTTARLAWLALTLQLLVVLQPGCGSSKTAADHETMPDPPSQDVAMAPLAPEQPEDPLQKFQRDLKARNPFLRLENMRAEQENGKIVRAEFENADLVDLSPLASTKLEALGIRNSLIQDLSPLKDLPLKALYLEECQVKDLSPLANSSISTLWVTYAPLVDIKPLEGLPLKELNLLGTQVTDITPLAKSPLEMLWLNETKVSEIAPLAGLPLVSLTLHKTPVKDLSPLAKNTSLKRLHIGETAVEDLTPLAGLKLDRLIFTPEKIQSGLEVIRQMPSLKELDTHFGQTPLRTPAQFWAEANRP
>NC_014148.1|WP_013108805.1|658304_659051_+|dethiobiotin-synthase
MQFMALLSNLRGLFVTGTDTDVGKTYVSCRIIEALLNTGHNVGAYKPACSGAIVSSLAPSSQPEWHDVNELWSATGQRFPKSQICPQCFLEPLAPPLAAAREGRTVSAQQLRSGVDWWLDRVDLLLIEGAGGIFAPISEQDVVLDLAVDLGFPMLIVARPGLGTINHTLLTIAAIRQRGLPIAGVVMTSASPFDQPSVMENIKEITARSGVPVLAVIEPDRPWPVTIDPADCFSHSRNLTHHEPTVGE
>NC_014148.1|WP_013108816.1|674210_675509_+|replication-associated-recombination-protein-A
MSLFASIEASHLEDAKPLAARMRPRNLNEFIGQSHVLGEGTLLRRMLIADRIHSVVFYGPPGVGKTTLAELIAKSSKRRFIALNAAATGVKELREALDESRERLKSSGTKTLLFVDELHHFNKQQQNVLLPDVEQGVVSLVAATTANPFFALIAPLLSRSQIFELKPLSTEEIKAVLRQALSDETRGYGQKNLKVPEEVFDFLAASSDGDARRALLALEIAVESLDSRVLELTLEIAQESLQKKAIRYDKSGDDHYDVISAFIKSMRGSDADATIYWLARMLEAGEEPRFIARRIVIAASEDVGMADPQALVVAMAAAQALEMIGMPEGRIPLAQAAIYVATAPKSNASYNAINQALSDIQKQYILPVPNHLRDGHYPGAKRLGHGEGYQYPHDAPDGWVKQDYLTEPRSYYTPTDRGYEQEVSRRRQRQGD
>NC_014148.1|WP_041401008.1|675538_675979_-|hypothetical-protein
MLLFGYMRNVPRCGENWNSQKIVVTCFRVQQRRADKTSLVPGQPARPVIMQSGTLAGTQSGAGLSGEDVDLDKGRDGVFTGRDNRRSGRIGETRLCQDAPYVQKDDHPQQALRCHANLRQRGFQAEVTAATQQFERGSQCVAKVKS
>NC_014148.1|WP_013108818.1|676104_676803_+|redoxin-domain-containing-protein
MRAVLALMITFISLMGYGCGAIKETAPERSSTTVTTHEGGADVDSSVITFHDEVISQDTPVVELSSLELTTPDGKPVRLSDFLKTGNLVVVVTSGYAGSICPVCSTQTSRFIANHEAIKSRGAEVVVIYPLGSENDRSRSGEFLAAANKRVALAPGAQPSFPLLVDVGLKVVDLLGIRQDLSKPATYILDRTGAIRFAYVGESMADRPSVQAILRQLDTLNTSMTNAARVGT
>NC_014148.1|WP_013108819.1|676866_678684_+|serine/threonine-protein-kinase
MPLDDEFLAVAVRNGLLEQVVADQLGALSASSGISSAQAALNAGRLSHDQIDVIEALRSPLDQIPGYELLSLLGQGGMGVVYKARQLAFDRIVALKLVRSGSASSTAVARFENEIRTIGSFSHPHIVTAFDSGKHAGRLYLAMEYLDGQDAEVFIPKERFLPERIVWGMIRQVATGLAYAAERGVTHRDIKPANLLLVTPPSGYPLPEGVPFVKIADFGLALLQEDFDAQTRLTRENAAVGSPHYMSPEQIMGSQVGLKSDIYALGATAYHLLCGHPPYHGYTLTQIYSRKMLRDPAALRELRPGLSADSVSLVERMIHREETERPNDYATLLHRIDTIQQSTDPAGVSASIPQRSSATPGTSPDRYRHSLVAWSRRLMTISAIVVGLAAIAAGFWWSLPINPKLTGPRNWQATGWVRQCFDGASLNGWRTIRGAWVPGAKDEEGGFVLSGRGALGYPLAKPVNGGMMRLDGFRLSVLWQRQSAQIVELQFPEEPSARHGETRSMVFQATPDSIRWGRRMLPTGSLETVFAERFITLPADSVHELRVEFQGGEWLAYLDGQLFGSSPSGPLPSNEFRLVAEVDPGDAEGAAWFSDILLEELGPPI
>NC_014148.1|WP_013108821.1|679095_680385_+|metallophosphoesterase-family-protein
MNVVDRRQFLGLTLSAAAFSAASNLLPFDDRYAHGKVLGADGMPVSPQVEGPETMFLTWPGDPTSTICIQWVDQDHGNELEIAYSPLESDNWQIAKVTTKPFPMTKDKVYRASISSLQPGTEYRFRMGADAPTFRFRTMPKKLTDTFHFVSGGDAGTGSHAIGTNQLAARQEPYFALLAGDLAYDNGKSPRTFIKFLKNYRAHMVDPQGRLIPLLACPGNHEVDGAYKQPREKAGSYLSVFDCFFPDTTYGVYDIGDDFSLVLLDTDHISPIEGEQTSWLEKTLAARQDKKHLFVANHVPAYPSYRAANIDSDKPGTGAAQRKLWCPLFERYNVDVVLEHHDHLFKRSHPLTDGRKDKYGVPYLGDGSWGMLRPLKEPELRPYLAKVSSSYHMTAHHLEGDERFHIALEENGRIADVCMTRNKRAARRG
>NC_014148.1|WP_013108822.1|680414_681005_-|rRNA-methylase
MRPVPLTTLAHELLRQHLQPGDFAIDATAGNGHDMEFLARTVGPAGLVWAFDVQEQAIAASEYRRSQAGVNWVQLQQVSHSQMKAVIPEKYHGKLAAVMLNLGYLPGGDKSITTTATETIAALEQALMLLSATGLLTVMLYPGHPAGAAETQAVREWAQGLPAYFEVKTQQYAERGPLSAILMTIHKRPESALHTL
>NC_014148.1|WP_013108823.1|681246_682200_+|aldo/keto-reductase
MLPELRTLGATDIRVTSIAMGCWPIAGITTQGVTKPRSLATLQAAFDAGINFFDTAYCYGYEGESDRLITEALGHVRDKIVIASKGGIQWSADRVQVKDGRPETIVRQCEESLQRLGTDVIDLYYLHGPDPQVPVEISAEAFVRLFEQGKIRSAGLSNATLEQLSAFHRVCPLSAYQPRYNMVQREIEQSQLPWCRENHVSCIVYWPLMKGLLAGHYPREHLFPPTDSRHKYAVFQGQEWQRNQDLLDELKAIARRCELSVARLVLQWTIQQAGITSALCGAHRPEQIQENAFAMAGKLNHETLMEIESAIARRDLP
>NC_014148.1|WP_013108824.1|682341_682698_+|YciI-family-protein
MLYAVLVYETAHETEARNHPERAGAYWGAYKAYSDALVQAGVMAGGNALQPISTATTVRIRDGKRDVQDGPFADTKEQLGGMFVIDVPHLEAALEWAARCPAALTGSAEVRPILPMNG
>NC_014148.1|WP_013108825.1|682756_684046_+|sigma-70-family-RNA-polymerase-sigma-factor
MSGSQNAADYRVTSGEWHLAVERVARESYGRLIAIICRKTNDLAAAEDALASALLTALETWPHSGLPVDPEAWLIRVAQRKWLDETRHTQLRDRVLREVISPVMALLQEKSAMHSTEVPLQDDRLAMMFACAHPAIEPSMRTPLILQAVLGIDASRIASAFLINPQTMSQRLVRVKNKLKVAKIPFELPPEHEWRDRLDDVLSAIYAAYGTAFDETMSGQSGTRALAREAIWLAQVVQKILPQSAEAAGLYALLLFCEARRDARRGSEDQYVPLLEQSPELWDGAMLDEAEATLSAAFQQQAPGRFQWEAAIQSAHCARRHFTSGQAVVDWPAIAVLYEGLLSFAPSLGARVAQVGALLQANQMEQAKERFALIPREACRTYQPWWVVSAELARRQGQNSQAHSDLMIAMGLTEDAAVKDFLARKAANL
>NC_014148.1|WP_013108826.1|684099_685176_-|DUF1559-domain-containing-protein
MSRRSGFTLIELLVVIAIIAILIALLLPAVQQAREAARRTQCRNNLKQLGLALHNYHDVFGSFVYRKGGTRGNGDASRNDGNYNRRTGMISLLPYLDQTPFYNSIEAGNPAATPVPVAPGGAAPWAGWSGYNMNIAALKCPSDPFEVRPRGTVSYAFNMGDFITNNRDETRTNGLFACNATYGVRDVTDGTSNTLAFAERCIGNIDWQSQNSVDVRRGTLGGVATITTNPGSCVTSVAAVSANRRFTTSTNVKGKFSSFWADAQAENVGFTPILSPNSPSCTNDTNTTSDAASSVLSASSYHTGGVHALMADGAVRFISDNIDAGGLGANANTLGGPSPHGVWGALGTRAGGEVTGDF

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Crispr_ID: NC_014148_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014148_2

1518423-1518493

TypeII

Consensus_repeat	Method
ACCATCTTGCAGGTGCGAACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014148_2

>merge|NC_014148|2|1518423-1518493|CRISPRCasFinder
ACCATCTTGCAGGTGCGAACAGGAATCTTGCGGACGCATTCTTCGCTCACCATCTTGCAGGTGCGAACGGG

>NC_014148|2|2|1518423-1518493|CRISPRCasFinder
ACCATCTTGCAGGTGCGAACAGG	AATCTTGCGGACGCATTCTTCGCTC
ACCATCTTGCAGGTGCGAACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014148.1\|WP_013109446.1\|1510228_1512352_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NC_014148.1\|WP_013109453.1\|1520229_1521042_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_014148.1\|WP_013109461.1\|1528475_1529960_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NC_014148.1\|WP_013109441.1\|1504844_1505402_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_014148.1\|WP_148227276.1\|1521148_1522015_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NC_014148.1\|WP_148227001.1\|1523400_1524762_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224539
NC_014148.1\|WP_013109451.1\|1517043_1517991_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|274043
NC_014148.1\|WP_013109455.1\|1522052_1523348_-\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NC_014148.1\|WP_148227002.1\|1530114_1530936_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NC_014148.1\|WP_013109459.1\|1526826_1527831_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NC_014148.1\|WP_013109445.1\|1509636_1510125_+\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_148227274.1\|1512390_1513620_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NC_014148.1\|WP_148227275.1\|1513644_1514511_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667
NC_014148.1\|WP_013109460.1\|1527951_1528443_-\|peptidase-M41	unknown	unknown	gnl\|CDD\|273520
NC_014148.1\|WP_013109463.1\|1531272_1531755_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|377217
NC_014148.1\|WP_041403086.1\|1525896_1526442_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NC_014148.1\|WP_013109443.1\|1505795_1506431_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_014148.1\|WP_013109449.1\|1514546_1515977_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NC_014148.1\|WP_013109444.1\|1506744_1509378_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379090
NC_014148.1\|WP_013109450.1\|1516079_1516664_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089

Protein	Function_ID	Function_description	E-value
NC_014148.1\|WP_013109446.1\|1510228_1512352_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NC_014148.1\|WP_013109453.1\|1520229_1521042_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	3.3133e-111
NC_014148.1\|WP_013109461.1\|1528475_1529960_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NC_014148.1\|WP_013109441.1\|1504844_1505402_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	3.17148e-28
NC_014148.1\|WP_148227276.1\|1521148_1522015_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.40166e-74
NC_014148.1\|WP_148227001.1\|1523400_1524762_-\|hypothetical-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	9.68398e-30
NC_014148.1\|WP_013109451.1\|1517043_1517991_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	1.81722e-126
NC_014148.1\|WP_013109455.1\|1522052_1523348_-\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NC_014148.1\|WP_148227002.1\|1530114_1530936_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	2.98679e-09
NC_014148.1\|WP_013109459.1\|1526826_1527831_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NC_014148.1\|WP_148227274.1\|1512390_1513620_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	4.59841e-20
NC_014148.1\|WP_148227275.1\|1513644_1514511_-\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.13312e-33
NC_014148.1\|WP_013109460.1\|1527951_1528443_-\|peptidase-M41	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	5.38406e-10
NC_014148.1\|WP_013109463.1\|1531272_1531755_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|377217	pfam04074, DUF386, Domain of unknown function (DUF386). This family consists of conserved hypothetical proteins, typically about 150 amino acids in length, with no known function.	1.26146e-48
NC_014148.1\|WP_041403086.1\|1525896_1526442_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.77981e-73
NC_014148.1\|WP_013109443.1\|1505795_1506431_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	5.30493e-10
NC_014148.1\|WP_013109449.1\|1514546_1515977_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	2.29871e-77
NC_014148.1\|WP_013109444.1\|1506744_1509378_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379090	pfam13248, zf-ribbon_3, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	0.00183924
NC_014148.1\|WP_013109450.1\|1516079_1516664_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	3.19837e-26

>NC_014148.1|WP_013109451.1|1517043_1517991_+|site-specific-tyrosine-recombinase-XerD
MPPRFKPVQNSVASALPTALPSTHVEGFVAYLQGECGLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLSGYLRYLHELKLATSTIARHLVSLKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSEDAVNRLLDAPMHQDLNPYRDRALLAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKERLVSLNPVAVSALKTYLARERPARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGLSDAVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSRLKAIHKQCHPRG
>NC_014148.1|WP_013109450.1|1516079_1516664_-|rhodanese-like-domain-containing-protein
MTIPTILPIELKTRLDAAEPVTIIDVRTPLEFQEVHAEGAVNIPLDELEAEKLSRFVNPESKTVYLICRSGGRGKKACEKLLATGPWQPINIEGGTQAWEAAGLPVHRGKKVMSLERQVRIAAGSLVVLGCALGAFVTPYAFGLAAFVGAGLVFAGVTDTCAMGLLIARMPWNSTPRSTPSCSLNPTSPPVTSH
>NC_014148.1|WP_013109449.1|1514546_1515977_-|MBL-fold-metallo-hydrolase
MLLKYFYDPALAHASYLVGCQRTGQALVIDPGRDVDGYIATAQEQGLKIVGAAETHIHADFVSGSRELADRVGATLYLSDEGPADWKYQYISKHQVQLLHDGDVFGVGNVQLKVMHTPGHTPEHISFVLTDGGSGATEPMGIFTGDFVFVGSIGRPDLLETAAGVVGSAEVGARQLFHSISKFMSLPDFLQVWPAHGAGSACGKGLGAIPSSTVGYEKLFNPALQIRSEQAFVDYILDDQPETPPYFAVMKRVNKVGPQLIRELPAVSRLNIEQLVDAQSTRLVIDTSPAALYAQKSIPQTINIPATQLAQWSGFFVDDGEPVLLISNAEGLSAQLKALRSIGVDNIQGYVDRSDLEQNDLATAAYRSISPTELKELMENHSIELLDVRSAHEFAEEHIEGATHAFLGGLRKSSKELSPDETFVVQCQAGGRSAIAASLLSRSGLKVINLAGGLNAWKRANLPVVHQSVDQHVVGA
>NC_014148.1|WP_148227275.1|1513644_1514511_-|TSUP-family-transporter
MSWPEWIEFSLQFNHVLAIIAGSLVGLSLGLTGGGGAIFAVPLLVYGMGVDPREAITISLIAVGLTSFTGFLSRWRMGEVDLKTGFLFALSGMIGTPAGTWIANLIPETVLMLAFAGLMLIVAERMWKKATKPFVKDSLCQPTGHEELDDQMTCQRSLSGQLILTSRCAALLLMVGVLTGVIAGLFGVGGGFVIIPALVLFSGMPIHKAVGTSLFVISLVSLSGVISQTVAGRTVDLQITLPFVLGGLAGVVAGQAFAKRLSGPALQKTFVVAIVLVATMVIVRNLTA
>NC_014148.1|WP_148227274.1|1512390_1513620_-|methyltransferase-domain-containing-protein
MLKADTQLESMTMNSLRYSLAKKLLIPGLFVASLLINFSTATVAQETSVKPGINRSFENAKPQEFIEKFEIESREVFHQREEILKACRISPGSVVADIGAGTGLFTRAFSPLVGEQGRVIAVDISKNFLEHIQSTSEKLRQQNVETVLGKDVSANLPEGSIDLAFICDTYHHFEFPQKMMASIFNALKPGGRLIVVDFRRIEGQSSDWTLSHVRAGQDVVTQEILTTGFRYVGERSGSLRDNYLIEFQKPAGVPDLKSSIIPGIGGVAELTGAPEAPRTGAKVIFDVTASSAAGEVNAGLERAARLLNLYGAAGLKATDVNIAIILHGDAALSILTNDKGSAAASLPNPNLELIQKLNQAGVEIMVCGQTLARKKIAHMQVGEGVIITTSAMTTLINRQTDGYSLVPVN
>NC_014148.1|WP_013109446.1|1510228_1512352_+|thioredoxin-domain-containing-protein
MNLVNRLAAETSLYLNQHAQNPVAWQPWDDEAWRLARELDRPVFLSIGYSACHWCHVMEHESFENPRIAELLNQWFVSIKVDREERPDLDQIYMAAVIAMTQQGGWPMSVFLTPQGHPFYGGTYFPPTSRYGRPGFAEVLAAIHDAWENRREVVTEQASQLTMTVHDQLSERQEPTTLHENLLEKAGRTLVRVCDRVNGGFGHAPKFPHAMDLRLAMRLAHRFDTTETAEVAELGLTAMAKGGIHDHLGGGFARYSTDEIWLVPHFEKMLYDNALLLQAYLDGWQFNKTDFYRRTAQSIVHYVLREMQVPRAELPGGFCAAQDADSEGEEGRFFVWSQSEIRDVLSGSELGNDDSRLFERAYGVTSGGNWEGHNILNLPKTIAALGRELGMAETALEQKLSLLRTKLFEHRKNRIAPGRDEKLIVAWNGLMISALARAGLVLDDQEALQAAQRAARVILDMAESLPYGLPHSIQKGQPKHGAYLDDYGCFLEALIELFLADGDPSWLSRAVPLIDRLVNEFHDDEQGGFYFTSSQAEKLISRSRDFQDNVTPSGNAAVANALLKFGRITGDARSEELAHEVLQAASGLMQQSTMATAHSLAALDWWLGPSYECVYVPAETTSTTDSEPLKQDAVQRVAHELYLPNVLFLTGRAQWEGTLAAGLVQGRLAPASEPVLYVCQKGVCQLPVVGEAAIIARLKGLAQSIDE
>NC_014148.1|WP_013109445.1|1509636_1510125_+|hypothetical-protein
MPRFALLEHDWPENHGDFLLEVPGLKSRDGLELCWTWRFPGDRKAWETLFRQGGLFEAERNTDHRAHYLDYQGAVTPAADGTSRGFVTIVFQGEFQWTDPFEFSPLEGPPVLPDFLQIAFQDHLGKQQIAGQMQLLNSASGWKITILPETNSKAFKADSVHS
>NC_014148.1|WP_013109444.1|1506744_1509378_+|zinc-ribbon-domain-containing-protein
MVPLRYQVTTLKDSAMDFAVCPSCKQSVLDDDAVDCPFCGAPMKGGPRPGGAPAKPAASKAAQSPKSVSASAANTVSATNTVNRGAVNKSSSNSASAGQTSGADDLPFETDTGAATTVAVATATKQRSFRIVCPMCETVGYISPKSAGTRVKCANPKCLVPVFDAPQLPPPEPEKPPEPPRKPNYILLGGGTAAICIVGGIVAFFVAGQPAASPVAVNRMTPEEAARLLAETAPAANNTSNQTKNSGTPDGNQQTTTDTKPNPGDTKTAASSTVDLAKELPILIEKTVLIRGSQNRSLPFSRQMAAEAYALLGNIEKAQEQAVAFDRVGQNVPFYKISILTELGWAQLRAGNSEAAKVSALAGYNLVNKLPGNGRARLIFASRLGSLLIATGEADKATQLANDYASTWKPGLIDSNQVAERLERQDGQVASLLQAGLDDFAGSIAQVTSTRPGVVWFEPQAAAMARSAAAHGFSEKAISWAISQPEVRQLETLGEIAAFEGATAAPDITAEALKAKIESWGANAPVMKLPASKAYILARGAAAAAAVSKPAALGLIKEAQALLESVELPSPVTWPNTQGLINPQLPAIAPLERLFVAWAEVSIACQLAGDAAGCDAALSKALATLQGVGPALNYVDQFLEQLNGPDVASIRDRLKDELGIRTEDAARQAFSSYRRGTLNYREHAAIRYDLELQALDRLAQAGGQAIVWKKLQELASDTNAVQKQVPSEISMKLVSSLATAFQLANEPTQAQAVTDWYSGITRIGAITPSATLLAASRFGAKDGSGAATVLKEADAPTRALMTSLLASQLKDAGMVEPALVLVGQTSDLSVREEASIFAAHAAHHLGEAAKIVTHLQTLPQATERLSWIRGLSMPIKK
>NC_014148.1|WP_013109443.1|1505795_1506431_+|universal-stress-protein
MEASRGNIFTVIDMIRRRGLRRRLEKVLMDREARAIVTFISNLQPEDDTVKLLLCVDASGSSDRAISRVTELGLGHSKSNSVTLFTVCESLPEHVFEISEKVGMHANELASAWSQKSRSAGEEALAQAKAKLLESGLPESAIHIKLYVADATPESRQVAAAAGLIEEMTSGNYDLVVIGRRGAKHLSENLIGSVADKVIRAASGRSVLLVD
>NC_014148.1|WP_013109441.1|1504844_1505402_-|Hsp20/alpha-crystallin-family-protein
MAIFRWGNAWQAMENFEQEVDSLLAGVLQGLRVVRHYPAVNLYELPDQLLITAELPGIRLEELDISVNEGSLTLKGRHLGPEGVPDEAFRRQERPRGKWQRTLKLPDGIREEAVSAQFSNGVLLIRLPKVPPKPARQITVTAVAENPPPVESVPEAIPTPARRIATEPGQVSGLIEPKERESHES
>NC_014148.1|WP_013109453.1|1520229_1521042_+|5'/3'-nucleotidase-SurE
MHILLVNDDGIHAPGLNSLHAELVKFAQVTVVAPAVEQSGVGHSITYLHPLLAHREYRQDEFFGWKVEGSPADCVKLGIMELAQPRPDLVVSGINHGANVGINILYSGTVAAAIEGAFFGVTSFALSQWLGNSAPRFPQAARLGAQLIQQIMARNPPTGSLWNINFPTWSTKDQSSDEPWPRGVRLTSMGVSRQRETLEKRIDPRGRTYYWTGLEPIHGHELVEGSDVAALVDGYVTVTPLHFDLTSRAQLMQAEANWSPLVIPPQHDQE
>NC_014148.1|WP_148227276.1|1521148_1522015_+|cation-diffusion-facilitator-family-transporter
MWINLALGIIKLIAGIIGQSFALLADAFNSLSDCVTSSAVIFALNYSQRPANSNHPYGFSKAEALAGSHVALAILISCFLLGWEAIERLTVQHGLPPWWTLAVAAANAVIKESLYWYKLKIAKSTGSTALLAHAWDHRNDALCSVAVLIGLSVVRIGGEAWRSADEVASLVVVCVVGFSAASIFRQSLREMLDLQIDETEVDAMRATVQKVPGVQGIEKFRVRKSGIEQIAELHLRLPAEITVFAGHALAHQVKAELMQQHPMLRDVIIHVEPASEPASHSSPEESAR
>NC_014148.1|WP_013109455.1|1522052_1523348_-|L-fuconate-dehydratase
MPKISGIQAIDLRFPTSRLLDGSDAMNPDPDYSAAYVILKTDDASLPVGHGMTFTIGRGNELCVAAIESLGKLLIGRDLREFTEAPGQFWRELTGDSQLRWLGPEKGVIHLATAALVNALWDLWAKIEKKPLWKLVTDFTPAQLVNCIDFRYLTDALTPAEAIERLERKVAGKSARVEQLLATGYPAYTTSAGWLGYSDEKLRQLCRSNLAQGWEVFKVKVGRNLEDDLRRLTIIREEIGPERRLMIDANQVWDVSTAIDWVRELAKFHPWFIEEPTSPDDILGHAAIAKAVHPIAVATGEHCANRVMFKQFLQAGAIGICQIDSCRLGGVNEVLAVMLLAEKFGIPVCPHAGGVGLCEYVQHLSMIDFIAISGSWENRFCEHAGHLHEHFMHPISMKNGRYQAPLAPGYSIEMLPETIAAYRFPEGAIWA
>NC_014148.1|WP_148227001.1|1523400_1524762_-|hypothetical-protein
MDLADLVSGIRIVELTAKTRQGAIRALVQAANWDDDGINPENVLEAIEEREAAAQTLVANDFALPHAFIDWDGDFRIVLGRSKTRVDYGGPAGVNVQLIVLLVIGRRLQQTHVEVLAALAELLKSPDFRQNLIDAKDIKAIDLLLMTQAGIQPENRPVRGPSIPRLTVNMVKTAIQLTESLAAQALLLAVERVENVPWEALANYKGRLLLVTSQHSEEFDHKREDLHIFDVAHASLSRADRANLGLLLAASSGLLTEKNSVVCVTGPDGRRLDSINVTKPEVHFRAMLSEKNRRGADVVRPAVMLRVLTLAIEIAAEGREAHPIGALFVIGDSRQVLRHSQQLVLNPFHGYARQLRNVLDPSLAETMKEFALIDGAFIIQGDGTVLSAGTYLTPKSASGSVAHGLGARHQTAAAISAHTQAMAITVSQSTGTVTVFRNGSSVLSLERSGRTKW
>NC_014148.1|WP_041403086.1|1525896_1526442_+|acetolactate-synthase-small-subunit
MKHVLSAMVMNQPGVLAHISGMLASRAFNIESLAVGETERPDFSRITFVVAGDNKVVDQVRKQLEKIVTVVKVMDYRDQDILERDLMLLKVSTVESGLSKVKELAEIFRAKIVDVGQSHVMIELSGPERKIDAFIDLMRPFGILELVRTGRIALAREVSLSVEDALKPPTPFDTSEVEIEV
>NC_014148.1|WP_013109459.1|1526826_1527831_+|ketol-acid-reductoisomerase
MAAKVYYDDDADLSLLKGKTIAILGYGSQGHAQAQNLRDSGLNVVVGQRPGSKNYDLAVSHGFKPLSIAEAVKQADLVNILLPDEVQGDTYKAEILPNLKPNALLLCSHGFNLHFGQIVPPAGVDAALVAPKGPGHLVRSEYEKGGGVPSLIALWPGASDNSRKLALAYAKGIGGTRGGVIETTFAEETETDLFGEQVVLCGGVSALIKAAFEVLVEAGYQPEMAYFECMHEMKLIVDLFYQGGLNYMRYSVSNTAEYGDYTRGPRIITAETKQEMKKILGEIQSGQFARDWLLENRVNQASFKAVRRREREHQIEKVGRDLRKMMKWINAKEF
>NC_014148.1|WP_013109460.1|1527951_1528443_-|peptidase-M41
MDSAPLPQTELTATAYHEAGHAVVALFLGRPVHEVTIEPNSLRLGQCRLNKGNFKPSKDVLEGEILILLAGVAAEARYRGDYRWEGAVSDLRQVRHFSSMRATNIKQMERLEQRLLNKVEHILSQAGPWLAVEEIARELVSRTTISGRSARHHFDLAMERFAE
>NC_014148.1|WP_013109461.1|1528475_1529960_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDMLIIRGGIPLAGNVRLAGAKNASLPIMAASIAVSGLSQLRRVPHLADVSTLTQVLESLGAVVTRDLSTGELAISPPHATTGIADYDLVRRMRASVCVLGPLLARWGKAVVSLPGGCNIGHRPIDLHLKGLVALGARIRIERGYVHAEATRLHGAEIYLGGPFGSTVTGTANIMTAASLARGMTRISAAACEPEIVDLGNYLNAAGARITGHGTPVIEIEGVDELHGVEHEVIPDRIEAGTMMIAAAATCGDVFIEDAQPRHLSAVIDILRQIGVSIEPSSTNDGRMGLHISGAAHLNPADCTALPYPGVPTDLQAQLTALLCLVPGISVITDKVFPDRFMHVPELLRMGAQIRREGASAIIAGPAHLSGTNVMASDLRASAALVIAALAAEGESVIRRVYHLDRGYEKHDEKLRQLGAQIQRTTDHPEALPDSLRMTGESSMEQHKVQEIPGRFTQPIQNPLAKPHFLSDGYAIARPMVSQSDDSSGPVADL
>NC_014148.1|WP_148227002.1|1530114_1530936_-|trypsin-like-peptidase-domain-containing-protein
MAMSYQGDWMLVPELFLRVAKVETYGQGQLLTNASGFFFEWQSELYLITNRHVCFDQLAGHRPDTLKLQLHTVQDDLTKSGPLEIQLYKQGMPLWRTYPRRENDIDVVAVPLPGKLLKQNYVISSFGASDILGPEETLPPGQQVLITGFPLGFHDTLNNLPLVRQAVVASDFSRPFKGNPYFVTDARTHRGTSGSPVVTKLLRPTPVAGQFEERWCLLGIHAATLDVSNRDPMYDDRLGLNVTWFASLIPQIIEGILPANPNPTPTSDSVCFN
>NC_014148.1|WP_013109463.1|1531272_1531755_-|YhcH/YjgK/YiaL-family-protein
MQTVIIDELANQHFYSHCHPAITRALQFLASPAAHELPTGKHRLDSDALIAIVEEYQTKQPTDAVWESHRKYVDVQYIVRGEEAFGLARTSDNLAIRTPYSDERDVVFYGPGTQRFVASAGMFLVFFPQDIHAPGLAVNEPSPVRKIVMKVRGDWGFNQD

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Crispr_ID: NC_014148_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014148_3

1849844-1851259

Unclear

Consensus_repeat	Method
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CRISPRCasFinder
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CRT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	PILER-CR

19 spacers

cas2,cas1

The CRISPR arrays of NC_014148_3

>merge|NC_014148|3|1849844-1851259|CRISPRCasFinder,CRT,PILER-CR
TCCTCAGCGGGGCCGCGCTTGGTTAGCGCGGAAGACGCCATGGATCAGAGCTTCAGCCAAGAATGTTCAATCGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACTTCCCGATCCGCAACCCGCCAGCGCCAAGAGGAAGAGGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACACGACCGTAGCAATCGCAACGCATGACAATGCAAAGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACTCGATCAATGCGGCGTAAACGACATCTCCTTGCCGCGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACGTTGTCGATCTCATACACTTCCACCAGCGAGAATGGCGGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACCGCGCGATCCGGCAGAGGAATCCATGTTTTTCAGAGAGTGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACTGCCCTGTCGGGCCGAATATCCAGCCGAATGGGGTGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACCGGAGGTTTGATGCTGCGGCAATCCATTTTAGTTCAGTGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACACCGCTTTGATCGAAGCGCCTGTGGCTGTCACATCTGCGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACTTTGCAAACTATCTGTCATGTGTGAAGACCAGATTTTGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACCTGTCGTTCTGCAGAAACTGATGAGGCATGCCGACATGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACGTCATGCTTCCACAGCTTACGGATGCCCTGCTGACGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACGTTGCTGCGGTTCCGGTTGCGGTGCGGGCAGCCACCGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACGCAGTTCTCAACGTGATTGCAGCATCTGTCCAATTACGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACCCTATTTGCTGGCTATGCTTCAAGCTGTAGAAACTATGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACACTCTCGGTCGACGCCGCTTAGGTCAGGAGTCACCAGGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACCCGGCCCGACAATCGCACCGCTGGCGTCGATTGTTAGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACATCAACAGCCAAAAATCATCATCTCTAGTCTTTACGAGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGACACGATCACGAATTCACCATCTACATCAGCAATCTCGCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC

>NC_014148|3|3|1849844-1851259|CRISPRCasFinder
TCCTCAGCGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GCCATGGATCAGAGCTTCAGCCAAGAATGTTCAATC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TTCCCGATCCGCAACCCGCCAGCGCCAAGAGGAAGAG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACGACCGTAGCAATCGCAACGCATGACAATGCAAA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TCGATCAATGCGGCGTAAACGACATCTCCTTGCCGC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTTGTCGATCTCATACACTTCCACCAGCGAGAATGGCG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CGCGCGATCCGGCAGAGGAATCCATGTTTTTCAGAGAGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TGCCCTGTCGGGCCGAATATCCAGCCGAATGGGGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CGGAGGTTTGATGCTGCGGCAATCCATTTTAGTTCAGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACCGCTTTGATCGAAGCGCCTGTGGCTGTCACATCTGC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TTTGCAAACTATCTGTCATGTGTGAAGACCAGATTTT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CTGTCGTTCTGCAGAAACTGATGAGGCATGCCGACAT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTCATGCTTCCACAGCTTACGGATGCCCTGCTGAC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTTGCTGCGGTTCCGGTTGCGGTGCGGGCAGCCACC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GCAGTTCTCAACGTGATTGCAGCATCTGTCCAATTAC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CCTATTTGCTGGCTATGCTTCAAGCTGTAGAAACTAT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACTCTCGGTCGACGCCGCTTAGGTCAGGAGTCACCAG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CCGGCCCGACAATCGCACCGCTGGCGTCGATTGTTA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ATCAACAGCCAAAAATCATCATCTCTAGTCTTTACGA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACGATCACGAATTCACCATCTACATCAGCAATCTC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC

>NC_014148|3|1|1849844-1851259|CRT
TCCTCAGCGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GCCATGGATCAGAGCTTCAGCCAAGAATGTTCAATC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TTCCCGATCCGCAACCCGCCAGCGCCAAGAGGAAGAG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACGACCGTAGCAATCGCAACGCATGACAATGCAAA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TCGATCAATGCGGCGTAAACGACATCTCCTTGCCGC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTTGTCGATCTCATACACTTCCACCAGCGAGAATGGCG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CGCGCGATCCGGCAGAGGAATCCATGTTTTTCAGAGAGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TGCCCTGTCGGGCCGAATATCCAGCCGAATGGGGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CGGAGGTTTGATGCTGCGGCAATCCATTTTAGTTCAGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACCGCTTTGATCGAAGCGCCTGTGGCTGTCACATCTGC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TTTGCAAACTATCTGTCATGTGTGAAGACCAGATTTT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CTGTCGTTCTGCAGAAACTGATGAGGCATGCCGACAT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTCATGCTTCCACAGCTTACGGATGCCCTGCTGAC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTTGCTGCGGTTCCGGTTGCGGTGCGGGCAGCCACC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GCAGTTCTCAACGTGATTGCAGCATCTGTCCAATTAC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CCTATTTGCTGGCTATGCTTCAAGCTGTAGAAACTAT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACTCTCGGTCGACGCCGCTTAGGTCAGGAGTCACCAG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CCGGCCCGACAATCGCACCGCTGGCGTCGATTGTTA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ATCAACAGCCAAAAATCATCATCTCTAGTCTTTACGA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACGATCACGAATTCACCATCTACATCAGCAATCTC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC

>NC_014148|3|1|1849916-1851259|PILER-CR
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TTCCCGATCCGCAACCCGCCAGCGCCAAGAGGAAGAG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACGACCGTAGCAATCGCAACGCATGACAATGCAAA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TCGATCAATGCGGCGTAAACGACATCTCCTTGCCGC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTTGTCGATCTCATACACTTCCACCAGCGAGAATGGCG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CGCGCGATCCGGCAGAGGAATCCATGTTTTTCAGAGAGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TGCCCTGTCGGGCCGAATATCCAGCCGAATGGGGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CGGAGGTTTGATGCTGCGGCAATCCATTTTAGTTCAGT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACCGCTTTGATCGAAGCGCCTGTGGCTGTCACATCTGC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	TTTGCAAACTATCTGTCATGTGTGAAGACCAGATTTT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CTGTCGTTCTGCAGAAACTGATGAGGCATGCCGACAT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTCATGCTTCCACAGCTTACGGATGCCCTGCTGAC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GTTGCTGCGGTTCCGGTTGCGGTGCGGGCAGCCACC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	GCAGTTCTCAACGTGATTGCAGCATCTGTCCAATTAC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CCTATTTGCTGGCTATGCTTCAAGCTGTAGAAACTAT
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACTCTCGGTCGACGCCGCTTAGGTCAGGAGTCACCAG
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	CCGGCCCGACAATCGCACCGCTGGCGTCGATTGTTA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ATCAACAGCCAAAAATCATCATCTCTAGTCTTTACGA
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC	ACGATCACGAATTCACCATCTACATCAGCAATCTC
GCTTCAATGGGGCCGCGCTTGGTTAGCGCGGAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014148.1\|WP_013109709.1\|1856138_1859132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238035
NC_014148.1\|WP_013109697.1\|1836732_1837299_+\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|376864
NC_014148.1\|WP_041403230.1\|1851966_1853658_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_014148.1\|WP_013109698.1\|1837624_1838623_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379468
NC_014148.1\|WP_013109699.1\|1839046_1839931_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NC_014148.1\|WP_013109712.1\|1861852_1862728_-\|zinc-dependent-peptidase	unknown	unknown	gnl\|CDD\|377621
NC_014148.1\|WP_148227020.1\|1845886_1848277_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|275278
NC_014148.1\|WP_013109705.1\|1851637_1851931_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014148.1\|WP_052301673.1\|1840178_1840742_+\|DUF309-domain-containing-protein	unknown	unknown	gnl\|CDD\|377120
NC_014148.1\|WP_013109710.1\|1859274_1859895_+\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013109714.1\|1865243_1867706_+\|peptidase	unknown	unknown	gnl\|CDD\|367843
NC_014148.1\|WP_013109711.1\|1860596_1861589_-\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_013109707.1\|1854063_1855047_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187556
NC_014148.1\|WP_148227019.1\|1834637_1836407_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|238233
NC_014148.1\|WP_148227021.1\|1848284_1849787_+\|hypothetical-protein	unknown	unknown	unknown
NC_014148.1\|WP_148227285.1\|1855167_1855797_+\|DUF1990-family-protein	unknown	unknown	gnl\|CDD\|378157
NC_014148.1\|WP_013109713.1\|1863374_1864703_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NC_014148.1\|WP_013109695.1\|1833150_1834632_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|129679
NC_014148.1\|WP_013109702.1\|1844473_1845730_+\|sialate-O-acetylesterase	unknown	unknown	gnl\|CDD\|377084
NC_014148.1\|WP_013109701.1\|1840832_1844009_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|274225

Protein	Function_ID	Function_description	E-value
NC_014148.1\|WP_013109709.1\|1856138_1859132_+\|hypothetical-protein	gnl\|CDD\|238035	cd00081, Hint, Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.	4.78011e-08
NC_014148.1\|WP_013109697.1\|1836732_1837299_+\|YqgE/AlgH-family-protein	gnl\|CDD\|376864	pfam02622, DUF179, Uncharacterized ACR, COG1678.	5.21754e-48
NC_014148.1\|WP_041403230.1\|1851966_1853658_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.15187e-124
NC_014148.1\|WP_013109698.1\|1837624_1838623_+\|hypothetical-protein	gnl\|CDD\|379468	pfam14100, PmoA, Methane oxygenase PmoA. This family is a putative methane oxygenase.	2.64584e-54
NC_014148.1\|WP_013109695.1\|1833150_1834632_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|129679	TIGR00591, Deoxyribodipyrimidine_photo-lyase, photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	2.86298e-91
NC_014148.1\|WP_013109699.1\|1839046_1839931_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	7.66684e-24
NC_014148.1\|WP_148227020.1\|1845886_1848277_+\|c-type-cytochrome	gnl\|CDD\|275278	TIGR04485, monoheme_cytochrome_c_SoxX, sulfur oxidation c-type cytochrome SoxX. Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.	1.1031e-05
NC_014148.1\|WP_013109705.1\|1851637_1851931_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.9666e-17
NC_014148.1\|WP_052301673.1\|1840178_1840742_+\|DUF309-domain-containing-protein	gnl\|CDD\|377120	pfam03745, DUF309, Domain of unknown function (DUF309). This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.	4.99153e-13
NC_014148.1\|WP_013109714.1\|1865243_1867706_+\|peptidase	gnl\|CDD\|367843	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain. This domain is normally found at the C-terminus of secreted bacterial peptidases. They are not present in the active peptidase. It is possible that they fulfill a similar role to the PKD (pfam00801) domain, which also are found in this context. Visual analysis suggests that PKD and PPC are distantly related (personal obs:Bateman A, Yeats C).	4.38177e-06
NC_014148.1\|WP_013109707.1\|1854063_1855047_-\|NAD(P)H-binding-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.53737e-126
NC_014148.1\|WP_148227019.1\|1834637_1836407_-\|CBS-domain-containing-protein	gnl\|CDD\|238233	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function.	1.34646e-100
NC_014148.1\|WP_013109712.1\|1861852_1862728_-\|zinc-dependent-peptidase	gnl\|CDD\|377621	pfam06167, Peptidase_M90, Glucose-regulated metallo-peptidase M90. MtfA (earlier known as YeeI) is a transcription factor A that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (ptsG) system, the major glucose transporter in E.coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in Escherichia coli. MtfA is found to be a glucose-regulated peptidase, whose activity is regulated by binding to Mlc available in the cytoplasm, which in turn has been released from EIICBGlc during times when no glucose is taken up. A physiologically relevant target for this peptidase is not yet known.	1.93505e-93
NC_014148.1\|WP_148227285.1\|1855167_1855797_+\|DUF1990-family-protein	gnl\|CDD\|378157	pfam09348, DUF1990, Domain of unknown function (DUF1990). This family of proteins are functionally uncharacterized.	9.02542e-64
NC_014148.1\|WP_013109713.1\|1863374_1864703_+\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	5.09222e-133
NC_014148.1\|WP_013109702.1\|1844473_1845730_+\|sialate-O-acetylesterase	gnl\|CDD\|377084	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase. The catalytic triad of this esterase enzyme comprises residues Ser127, His403 and Asp391 in UniProtKB:P70665.	4.806e-19
NC_014148.1\|WP_013109701.1\|1840832_1844009_-\|heme-binding-protein	gnl\|CDD\|274225	TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP\|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.	1.93695e-37

>NC_014148.1|WP_148227021.1|1848284_1849787_+|hypothetical-protein
MIIVALLTIGFSYVHSVSAEEVGERWGTEERERAYYPIVNIPLPKETVIEAGAFATLPDGRVAVGTRHGEIYIIDGIDDEKPNPRFHRFASGLDEIFGLSWKDQSLLVTQSCELTRVSDSDGDRIADRFETISDAWGYANYHEYAFGSKPDSAGNLFIALGLSESYHSYALNRGFIMKVAPDGATTAFASGLRSPGGIGHDEHGALFYIESQGPWNCSCSLKAVTKGSFHGHPASFPWYKTAPELGPVPVMPTSGTRVVTERQRVAQLAPYAVIFPYIRMGRSITAFTVNQTRGKFGPFENQLFLGDYTQSIVMRATTEQVKGVWQGACYPFREGLSTGILSVEFTPQGKLLTGGTNRGWPVRGIKPFALERIEWNGKMPFEIERVTIEPEGFKLTFTKPLSQEVGQLPESYKVFGFTHPYHAGYGGPEIEKHQPMMQSVEISPDGSSAKIKIDRLQPGFVYELDCSRLRSIDDESLLHHHAFYTVNEIPDKVGDVVNGK
>NC_014148.1|WP_148227020.1|1845886_1848277_+|c-type-cytochrome
MLWAMQWGAAKPALSAETESAAWPGLHPLTAAQVGSLLIHELKCGACHTGVESGRISEKTAPDLTNVGGRVSPKYLQEFIAHPAQKHPGTTMPDLLASRPETDRTAIAEAITQFLVDQSKEKSLPAAGSQFDQLRGKTLYHSIGCVACHGPREVFEQVSEKPKETDDDFDDEPEDHREKRVQPVAFGLDHVREKYNVASLSQFLFAPLHVRQSGRMPDMKLKPDEALSIAAYLVGDSKVDESLKTDERLVHRGRQYFQELNCAACHSLPGITAAKRVNRLSETSLSRGCLTGKGGKSPRYAVSREQRLAMELFIKESTKSDSPPVIDTDQVAIAKTLATFHCIACHTRDDFGGVPDIYNMFFTGNDLKLGDDGRIPPPLTHVGAKLRPAWLKKVLFDGESVRPYMVTRMPQYGELNIGHLPEMFASVDHLQGKDLTIPDVEGAKPQDREREKLLRQAGRELLGDKGLNCIACHSFNGRSSQGSQGIDLLTSYQRLQPQYFDSYLRNPGSFRPRTVMPTAWPNGVATFTTILDGETDHQIEAIWYYLSLGTSAADPSGLRSVNTKLVVDGSKAQIHRGRSRIAGYRGIAVGLPERWNYAFNAETGTISGIWKGDYIQVNWSGQGSGDFQPATEAVTLPQDVSFLQFEGEPTVWPRMPVMTKEARTNPDPLYPKNVGYQFRGYTLDEDHIPTFSYRSGAVDIFDRTQILGDPGNERLQRIFRFESPTTQTLWFRGLAGKITKEDSQTFRLGNLRLSIPEIPFRLREIPDQAGEVELLIPLQISQGQSTLEVNYELLSK
>NC_014148.1|WP_013109702.1|1844473_1845730_+|sialate-O-acetylesterase
MLFVRILLCQLALMAVSSWTLQIACAEGKPLKVFILAGQSNMEGHARVETFDYIGDDPVTLPLLKKMRGADGKPVVCEGVWISYFTGSGDKNGEGFGPLTAGYGSRRNPQEDGGKIGPEFTFGIAMDAAFEEPVLLIKTAWGGKSLNTDFRPPSAGPYVFNEKQLSDFRKQGKDIESIQKAKAEETGHYYRLMVDHVKHVLSDIPRVCPQYDEKQGYELSGFVWMQGWNDLVDTGTYPNRSEPNGYAAYSEVMAHFIRDVRKDLNAPQMPFVIGVLGVDGGKRNLQTANFRAAMAAPAMLPEFRGNVAAVETAPYWAEELGAIAQKYDQVRQMNYFLNSKHKDHANADGSMTEEQKRAYLKQYEEKLISPAEVTLWKRGASNAGYHYLGCAKTFAQIGNAFAEANLKLLNEENRKSSR
>NC_014148.1|WP_013109701.1|1840832_1844009_-|heme-binding-protein
MQRIEFDVLLAPCLTVLLMIQPAWAESERYSITVPEGFDIRQAASFPLVERPMFAALDQSGHLYVLDSGGSNGGDRLKNPTDVIRRLTDTNGDGIYDQSTIFADKIVFGTGIACHDGAVFITSPPSLWRFEDTTGDGIADQRVELVTGFAFNQSCTDDLHGTTVGPDGRIYFLPGRFHHKVRLKDGTPLRDGVGPWLMRCRPDGSDVEFVSGAVGNPVEVAFLPNGDSFIQGTFWAKSSAPGGLRDGLIHAVAGGEYSVRDRDYSDRIRTGDYLPALVPLTATAPSGLTSYRSSSWGDEFQENLFSSHFNTGKILRHRLKAESATYRCETEEFITAPQGTVHFTDVLEDADGSLLIVDTGGWFIACCPASGSSQPTVKGSIFRILRNAATKVQDPYGNLIPWKSLPTDDLLARLDDSRVMVQERAIIEVARREQRMTDALATLLTSPQSSFRQRTGAVWALCRMDDNAARAATRLAFRDPSHSVRQAAAYSAGLHRDRSARQTLEALLVDESSGVRREAANALGRLQQKESIPALLKSLEPQQVSQRVTADRFLEHAITFALIQINHAESTRAGLLSHSADVQRITLIALDQMPLTILDAKDLTPLLSSGNTPLRQAAIQVLSRHPQWTAESIALIDEWFKSDQINEDRVQIIAGFVRTLQHEPQMQETISRNFQEQQLRSKTSRRALLIAVSKLEKANIPQGWLNGIEESLAAEDTEICMAALDAVGKLSLLPLERSIRRIAQEPAREPQLRLKALRTLTTLDKRLSDSEFEYLVSRLSAETPIRERITALDVIANTTHDEQRLSQLLPFVKVANPVELPYLLAAYVNCTNKEIIEQLVEALEVSSATPTLDMIEQILKPHGEEVQRDAAPLLERLRKLKNDQLIRLNEWEQRIEGHKGDSERGRLLFMNKAQCHLCHVTDSQDKVNSPAKIGPDLAAIGEIRTRRELLEAILFPSASFARGFEPIVVTLQDGRVWTGLAGKETTEEFILTTIQDNKPVEKMIRRNEIEEVAVGRVSAMPNGLEQPLTAQEFADLMTFLQNLRASKVTKTVTEGVAN
>NC_014148.1|WP_052301673.1|1840178_1840742_+|DUF309-domain-containing-protein
MLDLSKQAPRLLPSTELPAYTFIPGSDAPHPYRDPRGHSYQKRHPPSRPLIPASWAENRNYLLAMDYFNYGYYWESHEEWERLWRVSTPDSLVGRFLKGLVKLAAAGVKVRENSIHGVRRHSASAGEIFADVAAEVDAEFFCGLEFTVLQFASDRAAQLGFREKVVGSTPVRIFPFVLVPEPMPLAG
>NC_014148.1|WP_013109699.1|1839046_1839931_+|alpha/beta-hydrolase
MKWIACSILTAFCVWGILFCLPPNRALAADLQPVMDVPYREKMRNERTTLDVYPGPTANAPVVVWVHGGAWEIGSKTPGAREKADFLFKQGWGMVSINYRMHPEVKWSEMASDVAHAIAWVVNANRPEIKSPASIVLMGHSAGAHLAALVATDPRYLKAADVQLNLLSGVILLDGAGYDIPEQIRIARLPRMKEMYEKIFSADEATQKEASPTLAVQKGIGIPPFLILYVASRADSRQQAMKLQEALKRADVSAAVEGLSGKNHATINRELPIEGDSGGVLVRKFLSELSPSKN
>NC_014148.1|WP_013109698.1|1837624_1838623_+|hypothetical-protein
MHLMISNAALLARGVLAILSVMVCSAATSTAGFEWKTNAAGTETDLTLDGQPVLKYMHAYDPSTPERNAETYKVFHHVFGPGTGDLITKGPGGTFPHHRGMYVAWNKTQTDKGSYDFWHCTKGAHQKHIKFLKQEANDVEATATAEIHWEDADNKPVIREERTVTVKKLPLGDGKFGWQIDWSTVLHSERGKIRLTGDRQHAGFQFRAPQSVADANSARYIRPANFPQQPEAVQENDGPAEPKHANLDWCAMTYPVNDNKYTIAYFEDPSLPKPRRFSERPYGRFGSFFETDLLPDEPLKMTYRILVFPDNSQTSESLQKAYDQFTATLKKS
>NC_014148.1|WP_013109697.1|1836732_1837299_+|YqgE/AlgH-family-protein
MAESLRGKLLVASKQLKDSNFYKTVVLIVEDNENGSMGLVLNRPSSILVNHALSEHFQLPESAELVHVGGPVEPAALFILHNLEELSHEGTGVIPGVWLGNSGEAFEDVLRSSDPHQPGVRFRVFCGCAGWSPGQLEGELAHGDWHVAPAIKSIVFAEDPYEIYEQMLQAVFESHRIVPHTSPNPQWN
>NC_014148.1|WP_148227019.1|1834637_1836407_-|CBS-domain-containing-protein
MRILILSVIVGVVAGLGAALFQTLCQFVTWGTLETWAGYSAPEPTGEPRLFPPGSHTFVPWMLVLITTIGGLISGLLVFCIAPEAEGHGTDNVIAAFHHGRGLIRARVPLVKLLASAITIGTGGSGGREGPIAQIGAAFGSNMARLLRLSVRERRILMAAGMGAGIGSIFRAPLAGAMFSAEIMYRDADIESDVIVPSAIASIIGYATFSQFLPVEFQNQPLFGNQTVYVMSSLWELIPLGLMALVLSGASWFYVRTFYGTVRLTHQLPLPPHFKPAIGAGLAALIGIGLYFLFDRNILALGVLATGYGTLEVALSNASTAGIGLLCAVAFAKIITTSLTISSGGSGGVFGPSMVIGGCLGAACGLFFHHFFPGIVKQPELFAIVGMAGFFAGSARAPISTVLMVSEITGDYGLLLPTLWVSSLCFVLCRGWTLYHCQVESRSESPVHQYDWVPSQLAEKFIKDIKLTHTQVLRVDEPLTRIMHLLTTSHQSVFPVVDHHGALVGRISLDQLLPRLEDQTSWPNTFARDLSLPFAMTLTLETPLAQAISDLAKNADGVIPVIDPDAANHYLGMLTSQQIMGSIHTNHRE
>NC_014148.1|WP_013109695.1|1833150_1834632_+|deoxyribodipyrimidine-photo-lyase
MALVPEAPSSRVRQLNSCPLKKSGRYVLYWMISARRLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWSSVRFHHFVIEGMAEHHALCQERGIAYHPYVEPEPGHGVGLVEAYAQKAAAVITDDFPCYFLPRMVQTLGQRIDVPLECVDSNGIFPMRATDQVFTTAHAFRRFLQKNIKPYLSEFPVADSLAGPILSMEIPGQIARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQEAVARFFKSRLPRYADDRNNPEQEAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHLPEKASGSREGWWQMSPAAEAFLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHAGDHRPSLYDLHQLEIAQTHDELWNAAQRQLVREGRMHNYLRMLWGKKVLEWSLTPQQAVETLIHLNNKYAVDGRNPNSYSGIFWVFGRYDRAWGPERPIFGTIRYMSSDNTARKLPVKDYLKRYAASSGK
>NC_014148.1|WP_013109705.1|1851637_1851931_-|CRISPR-associated-endonuclease-Cas2
MKNVYLISYDVSDAKRLRLTHRKLCGFGTSLQYSVFRCELSKLQLMSLKEGLWEILNLVEDRVMVVDLGPAGARGDDCVEFWGNPRTEIPERKAFVI
>NC_014148.1|WP_041403230.1|1851966_1853658_-|CRISPR-associated-endonuclease-Cas4/Cas1
MLNEFTYCPRLAYLEWVQGEFRDNIETKEGTFGHRNVDIPTKKSFDAPDENPDESSHHVSEGSAIQEITADSLAARALMLSAPSEGLLAKLDLIELKGSKAVPIDYKRGNVPDVPHQAWEPERVQLCAQGLILKANGYECDYGELYYIESRRRIRVQFDDTLIARTRELVREMRHMASTRQIPAPLVDSPKCPKCSLVSICLPDETNCLRNSTREDSAPESSESIRKLVPARDDALPIYVQDQGTYIGKDGERLKLTPAKSSPLFIPLIQVSQVCLMGNVQVTAAAIRELADRNIPISYFSYGGWFTALTSGMCHKNVELRMAQSKAAFDPQAALSIARGFISAKIKNSRTLLRRHADDKHRSDLDRLADYIQKVEQVDNLNSLMGLEGMAAKTYFAGFSRLLRGGDEFNLEGRNRRPPTDPVNALLSFVYSLLTKELTITTQAVGFDPFLGFLHQPRYGRPSLALDLAEEFRPLVGDSTVLTLINNEEVSPKSFIRRAGSVALTETGRKAVIAAYERRMETEITHPIFGYKISYRRLFEVQARLLSRVLLGELDKYPGFCTR
>NC_014148.1|WP_013109707.1|1854063_1855047_-|NAD(P)H-binding-protein
MPSTEVNKPQVVSENTVLLTGASGYVGGRLLPLLEAQPLTLRCLARNPAKLRPLIKHTTEIVPGDVLNPASLDAALEGVHTAYYLVHLMSGSANFEQLDRQAAQNFADAARRTGVKRIIYLGGLGDDNDHKLSPHLRSRHEVGEILQASGIETIEFRAGMVIGAGSLSFQLMKSLTDRLPVMICPRWLATPTQPIAIDDVLAYLSAAKDLPTGDSRIFEIGSPDIVTYGDLIREYARQQGLHRWLIFVPILTPYLSGLWLALVTPATYEVGRHLIEGLKNPTVVQDTQALKVFSINPMSVQQAIARAISSRGESFVKASQVSARSLH
>NC_014148.1|WP_148227285.1|1855167_1855797_+|DUF1990-family-protein
MLYLHKPSADILARFVEQQRKLDFNYSAVGATALTPPSGYTVDGTRIELGTGEEVFDAAKLALLNWQQFRLGWVDVWSAETPLEIGQVVAIMGQAVGLWWLNACRIVYTIDESGPISRFGFAYGTLPGHVESGEERFLIEWDQDTDRVTYEILAFSKPNHILTRLGYPLVRRSQKRFGRDSAASMFRAVNEAQIVPKVYQHTGLMSQAS
>NC_014148.1|WP_013109709.1|1856138_1859132_+|hypothetical-protein
MVDYTYADASSPGSDPTGDHGYSEYEGVFESGTAHDLAEWNVTFSNPMSLINQALAPYNYFNLPFIPQAFTNAMGGYEPSYLGDWHLSSEGWASDTQYYKYYENDRTGDWFIQYWDHEPDHDDPPLYTEYGGPSHDALSQAMGQAQAAAQKKANQTPPDEAPPAQSADQNRLEEEGSGSGGEYSSSEQSEPPSPGDETGQAQNNAENRAQERLESAASGNSTEVSPSSQGGVSIPSTPDTPVSGVSQPTAPIAPSGNAGAPAQSAWDQFVGVASQVANAHAQLSAGVVQAFVVDGFMGSVQGIYDLAKGAYNAATQYASWQMNRLWSSPWKVLVDPWGVGEGIGIAAKKVSELTAKMQPYVDEISSLPSETIWKLFIGDFDAVRGQVSPTLLRAAELAHGLSSSVYESIASNLTMDKAPGLLGRVFGMVLYEIVEGLVITGITAGAGAAAVGAKIAKKLTRLSDLPGLDSPKVQKAINDVVGFLQSGGKVDGPSKPPATPHMPKSSAELADEAAALAKKKCDEARALGKEGGCFVPGTLVSVTSVALHDKSISDFLLVTTNGICPSSEPGVSEQSFSRSVDAKEYASLPIETISLGSRVVASNPHPWEFDSRWEEPESDSWRTIHLEMYKQDGSVIDSQLLRPVEVVESLNLHPGRMILIHADELDVAGMALIKSVSNAPSIAQGTGRVVIGRFMTREVNELIRLTLSTGDVVEGTPNHPLWSVDLNDWQAMEMFEAGDYLAGHEENVLVLSKERVEHTTPVYNLEVHGEHVYHLTQAGILAHNTYPEDTPNPPPTKDIVPEPPSPPKADDIVPEVKGVEPTTRYTLKDRLNSPDDGAHKEVFSVMETDKIAVGILKKGASPAILAKERALLKQLEEAGLPVMKNHEITEYNGRPAIVMDRYALGSKKIVKYNSKIRDLESIGGSVLLNEKSISDLMAIKSKMMEKNIKIDELQFLIGEDGSVVIADPLDVYPQPPTSRNKKMIDMLIRKAIENTRI
>NC_014148.1|WP_013109710.1|1859274_1859895_+|hypothetical-protein
MYKDPRIDYEFYRDVSSPSKMSSAFERVIGCSITKLVRCSDCTPEELVRDYHVNYSQVFSFTEGPIIVYLSSGDVIVIGSGDESWSLDISWVPVEEVGESVLLREILNDGWVVISCEDTELCEEWVRELLGRKICAIDMLKWNPTDEQFDAYLVRLREVGLVFRFEGEKCLILAHSLAKAPNPLNVIRPDQVVDRYVGTLETVKLA
>NC_014148.1|WP_013109711.1|1860596_1861589_-|hypothetical-protein
MRTLLCGITMLALSSFHSTLADDTSRTLAKSNDAVPSIAEARKVLDLSQIPLAPGAEKAPRRPIFSLSYDCTTGTKESYKFHQNQFTSTGWTELPGSSVEDALASGTFQKNGYSLSMMVMPAGGKSLVSIIPHGNVPLAKLPSLPGSKVLSDTPAQIMLIMQENSAVLASKITQDLINRGWKPYGEAGPTRLFAQGSTLLNVMISDAPGQAGKSMVMYSTVLRSADLPVTDDATSIQYSDALTQVSWQSSSDPKEVIARTKTLMEAQGWKSTTMEPLYIDYKWTMFFRTDPKTLRKLEVRDLKPGSRALLKEYLLEEIPDQPATAAPGNP
>NC_014148.1|WP_013109712.1|1861852_1862728_-|zinc-dependent-peptidase
MWKWLRNRQRKLRSQKPLPHFLSRLIKRPDLSTWLTDAARVKLINHARNMVAEKNWEGLSGLVVTEEMKWKIALQASRLTLGFDDSPFDSIQSILIYPSTYVAPQQTKLGHIVVESSSLRLGEAWKRGPIVLAWEDIQREWEGHEPFHNVVIHEFSHVLDMANGDADGMPVIENPALARNWISLIPQQFAQLVQRLHSGHSDIINSYGATNLAEFFAVSTEAFFSSPRLFNIWHPELAQLYQQYFGHTFYSTSWPLHPQYSMINPSQFTASQTSDYLSSHRYLNHERYLVG
>NC_014148.1|WP_013109713.1|1863374_1864703_+|DUF1501-domain-containing-protein
MVKVSPNCAPAHFQALSRRGFLSVGMLAGTSLTLPHLLQQQALADLKDYKTFQGTAKSIIHIFLPGGIAHQESFDPKPNAPIEYRGEMKQVQTKLPGVMFGETLTKTAEVADKLCIIRSMTHGEAAHERGTHNMFTGYRPSPALQYPSIGSVISHEFGPRNNLPPYVCVPNVPNEYAGSGYLSSAFAPFALGSDPANNGFKVRDLNLPGGVDDARFESRRRMLDAVNGHFAQREKSDELTAMNTFYDRAYSLISSSQAREAFDIEKESPEIRDQYGRNTAGARMLLARRLVESGVRLVNLTYGGWDHHTNIVQGFKNQMPQFDQAFSMLIKDLDQRGLLGETLVMVSSEFGRTPKINGTAGRDHYPKVFSVALAGGGIKQGAVYGSSNAVASEPDENPLGIEDLFTTVYHALGIVADKELMAPGDRPIEIVDGGQVVKELLA
>NC_014148.1|WP_013109714.1|1865243_1867706_+|peptidase
MMKFWFARNLSIACLLMGLATAGHVLGADPVVRNVMPRGAQRGTEVELSFNGERLGDAAEVIMYEPGIEVLDFKVENDKLVKARVKLSSDQTPGIRHLRLRTKSGMSKTQNFAISALPVVEEVEPNNEFAKPQVISNNVTINGVVTNEDVDYFVVDAKAGERLTAEVVGIRLGNSMFDPYVSIINESRFELAGSDDAAFGTQDGVASIVVPTDGKYILMVRESSYGGSGDSYYQLHIGNYPRPLAIVPAGGKPGSTVSVTYYGDVKGPLTRDVVLPTLESLPASSPLNFALSASDDSGTSPTGNAFRLTDLENVIEAEPNDSMEQAPLAVLPAAMNGILQTEGDRDLFAFEAKKGENFEFVVYGRRLRSEIDSVLQIWNDKGNAVANSDDSPGTPDSQLRFNCPADGKYFVMIRDHLGRGGNAYHYRIEANPITPRLDFSINEFVQFQEDTLELPAGGRLPFLVTATRRDVGGPIEFRSENLPQGVTIEAPQLADGQGVAQVVLVAAPDAPLSLKMSQIVGFIAADPNRHVESRVRQDAIMVRGQNNRPFFIEALPSLGVSVVEPVPFSVEIVQPKVPLIKNSPLKLKLIAKREGDFKGPINVELLQNPPGVNSSRNAVIAEGQTETVIDVNAAGNAPAGDWKICARVRADVGGSRVSASPFVALKVAEPYVKLEFAKSAIEQNAEIDYPVKVEQVTPFEGTAKVVLMGLPHQTTAEPLEMTKETQELVFKIKAGPEAPVSKNKNLFCQIIIQQEGEEVIHHLGSGELRIDKPLPPKTTPAPAPTPQVAEAPKPPATKPLSRLEQLRLEQQQKAAAGQAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014148_3	3.19\|1851189\|35\|NC_014148\|CRISPRCasFinder,CRT,PILER-CR	1851189-1851223	35	NC_014149.1	17735-17769	1	0.971

1. spacer 3.19|1851189|35|NC_014148|CRISPRCasFinder,CRT,PILER-CR matches to position: 17735-17769, mismatch: 1, identity: 0.971

acgatcacgaattcaccatctacatcagcaatctc	CRISPR spacer
acgatcacgaattcaccatctacatcaggaatctc	Protospacer
**************************** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014148_3	3.19\|1851189\|35\|NC_014148\|CRISPRCasFinder,CRT,PILER-CR	1851189-1851223	35	NC_014149	Planctopirus limnophila DSM 3776 plasmid pPLIM01, complete sequence	17735-17769	1	0.971
NC_014148_3	3.12\|1850682\|35\|NC_014148\|CRISPRCasFinder,CRT,PILER-CR	1850682-1850716	35	MH992213	Apis mellifera associated microvirus 15 isolate INH_SP_268, complete genome	2433-2467	8	0.771
NC_014148_3	3.19\|1851189\|35\|NC_014148\|CRISPRCasFinder,CRT,PILER-CR	1851189-1851223	35	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	865324-865358	9	0.743
NC_014148_3	3.19\|1851189\|35\|NC_014148\|CRISPRCasFinder,CRT,PILER-CR	1851189-1851223	35	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1307909-1307943	9	0.743

1. spacer 3.19|1851189|35|NC_014148|CRISPRCasFinder,CRT,PILER-CR matches to NC_014149 (Planctopirus limnophila DSM 3776 plasmid pPLIM01, complete sequence) position: , mismatch: 1, identity: 0.971

acgatcacgaattcaccatctacatcagcaatctc	CRISPR spacer
acgatcacgaattcaccatctacatcaggaatctc	Protospacer
**************************** ******

2. spacer 3.12|1850682|35|NC_014148|CRISPRCasFinder,CRT,PILER-CR matches to MH992213 (Apis mellifera associated microvirus 15 isolate INH_SP_268, complete genome) position: , mismatch: 8, identity: 0.771

gtcatgcttccacagcttacggatgccctgctgac	CRISPR spacer
ctgacgtgaccacagcttgcggatgccctgctgat	Protospacer
 * *.*.  *********.***************.

3. spacer 3.19|1851189|35|NC_014148|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.743

acgatcacgaattcaccatctacatcagcaatctc	CRISPR spacer
tcgtcgaacaattcaccatctatatcggcaatctg	Protospacer
 ** . *  *************.***.*******

4. spacer 3.19|1851189|35|NC_014148|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.743

acgatcacgaattcaccatctacatcagcaatctc	CRISPR spacer
tcgtcgaacaattcaccatctatatcggcaatctg	Protospacer
 ** . *  *************.***.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1318588 : 1347039

Shigella_phage(50.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095522490.1\|1318588_1319185_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.7e-26	36.5
WP_148226989.1\|1319221_1319533_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_041401193.1\|1319451_1319673_-\|transposase	transposase	NA	NA	NA	NA
WP_013109317.1\|1320085_1322794_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_013109318.1\|1322967_1324461_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_013109320.1\|1324739_1325378_-	hypothetical protein	NA	NA	NA	NA
WP_013109321.1\|1325406_1333602_-	RHS repeat protein	NA	NA	NA	NA
WP_081440216.1\|1333675_1335589_-	glycosyltransferase	NA	NA	NA	NA
WP_013109323.1\|1335663_1335888_+	hypothetical protein	NA	NA	NA	NA
WP_013109324.1\|1335945_1336464_+	hypothetical protein	NA	NA	NA	NA
WP_013109326.1\|1337282_1340771_-	glycosyltransferase	NA	NA	NA	NA
WP_013109327.1\|1340767_1342420_-	glycosyltransferase	NA	NA	NA	NA
WP_013109328.1\|1342416_1343346_-	hypothetical protein	NA	NA	NA	NA
WP_081440217.1\|1343576_1345484_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	7.6e-39	25.5
WP_013109330.1\|1346415_1347039_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

3974650 : 4021571

uncultured_Mediterranean_phage(50.0%)

transposase,integrase,protease

attL 4001233:4001248|attR 4031842:4031857

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148227140.1\|3974650_3975043_-\|transposase	transposase	NA	NA	NA	NA
WP_013111323.1\|3975403_3976219_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_013111324.1\|3976258_3976999_-	hypothetical protein	NA	NA	NA	NA
WP_148227141.1\|3977008_3977800_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_041403772.1\|3978446_3978665_-\|transposase	transposase	NA	NA	NA	NA
WP_081440288.1\|3978892_3979060_-\|transposase	transposase	NA	NA	NA	NA
WP_013111326.1\|3979303_3981424_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	8.5e-07	40.8
WP_013111327.1\|3981417_3982740_-	BREX system ATP-binding protein BrxD	NA	NA	NA	NA
WP_013111328.1\|3982736_3985652_-	BREX-6 system phosphatase PglZ	NA	NA	NA	NA
WP_013111329.1\|3985648_3989926_-	BREX-6 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_013111330.1\|3989937_3993564_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_013111331.1\|3993581_3994217_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_013111332.1\|3994213_3994996_-	DUF1819 family protein	NA	NA	NA	NA
WP_148227350.1\|3994995_3995580_-	BREX-6 system BrxE protein	NA	NA	NA	NA
WP_052301605.1\|3995732_3995990_-\|transposase	transposase	NA	NA	NA	NA
WP_148227351.1\|3996047_3996107_-	hypothetical protein	NA	NA	NA	NA
WP_081440289.1\|3997104_3999282_-	hypothetical protein	A0A1B1IUG7	uncultured_Mediterranean_phage	9.0e-20	27.8
WP_041401959.1\|3999599_4001621_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	1.2e-26	29.2
4001233:4001248	attL	NA	NA	NA	NA
WP_013111336.1\|4002375_4003383_-	hypothetical protein	NA	NA	NA	NA
WP_148227142.1\|4003499_4004057_-	hypothetical protein	NA	NA	NA	NA
WP_013111338.1\|4004287_4004512_+	hypothetical protein	NA	NA	NA	NA
WP_013111339.1\|4004688_4004901_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_081440290.1\|4005376_4006696_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013111340.1\|4006974_4007634_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_041401963.1\|4008268_4009918_+	hypothetical protein	NA	NA	NA	NA
WP_013111342.1\|4009977_4010970_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_013111343.1\|4011046_4011814_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_013111344.1\|4011810_4013142_+	FliI/YscN family ATPase	NA	NA	NA	NA
WP_013111345.1\|4013311_4013755_+	flagellar export protein FliJ	NA	NA	NA	NA
WP_013111346.1\|4013751_4014429_+	hypothetical protein	NA	NA	NA	NA
WP_013111347.1\|4014526_4016977_+	flagellar hook-length control protein FliK	NA	NA	NA	NA
WP_013111348.1\|4017074_4017494_+	flagellar hook capping protein	NA	NA	NA	NA
WP_148227143.1\|4017662_4017866_-	hypothetical protein	NA	NA	NA	NA
WP_148227352.1\|4018304_4019735_-	protein kinase	A0A1V0SDC3	Indivirus	1.8e-16	31.4
WP_013111351.1\|4020272_4021571_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
4031842:4031857	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014149

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_014148

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection