CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014166	Arcobacter nitrofigilis DSM 7299, complete sequence	1 crisprs	csa3,PrimPol,cas3,DEDDh,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2	0	5	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014166_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014166_1

2825927-2827069

TypeI-B

Consensus_repeat	Method
CTTGAACCAAGACATATGATGTATTGAAAT	PILER-CR
CTTGAACCAAGACATATGATGTATTGAAAT	CRISPRCasFinder
CTTGAACCAAGACATATGATGTATTGAAAT	CRT

17 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

The CRISPR arrays of NC_014166_1

>merge|NC_014166|1|2825927-2827069|PILER-CR,CRISPRCasFinder,CRT
CTTGAACCAAGACATATGATGTATTGAAATGATTATCACAAAGAAAATAGTGATATTTCAGTTTATCTTGAACCAAGACATATGATGTATTGAAATATAAAAAGTTTGGAACAACAATTATTACTAAAGCTCCTTGAACCAAGACATATGATGTATTGAAATATTTTATTAGATTGGATTGAAGAGTTTCCAGAAACCTTGAACCAAGACATATGATGTATTGAAATTTCGTATAATCAAAAAATTCAAATTCTTTATTTGCTTGAACCAAGACATATGATGTATTGAAATACACTTTCACCTGTCACTCTACTCGTGGCACAGAGCTTGAACCAAGACATATGATGTATTGAAATTAAAGAAGTTAAAGACTATTTTGAAAAACTTTGTGATGCTTGAACCAAGACATATGATGTATTGAAATAAAACAAGACCTATACAAATAGAGCCTTGGTTTTTTCTTGAACCAAGACATATGATGTATTGAAATGGATAAACCACAAGAAGATATTAATATTGTCAATACCTTGAACCAAGACATATGATGTATTGAAATATATCTCATTTGGCAATTCAATATAAATCTTATTATCTTGAACCAAGACATATGATGTATTGAAATAAAGTTACTCAATTTGGTTGGGTTGTTAGCCCTACTTGAACCAAGACATATGATGTATTGAAATAAAGATGATAAGACTATATTAGATAGAATTCAAATTCTTGAACCAAGACATATGATGTATTGAAATTTAATAACAGTTTCTGCAAATTCTTTAGCATTTTCTTGAACCAAGACATATGATGTATTGAAATTGAGGAAAAAGAAAAATACAAAAGTGAATCATGGAACTTGAACCAAGACATATGATGTATTGAAATAAAATATATAAGATTAATAAGCCCACAATCAAAAGCTTGAACCAAGACATATGATGTATTGAAATATAAAACAGAAAGAGAAATGAGAAAAATCTTAGGACTTGAACCAAAACATATGATGTATTGAAATTAATTTTTATACTTGCAATAATTGCGGAATGACACTCTTGAACCAAGACATATGATATATTGAAATTAAGATAATCAAGTTTTCCAAAACGAGGAAACTCTCTTGAACCAAGACATAATGTATTGAAACTC

>NC_014166|1|1|2825927-2827004|PILER-CR
CTTGAACCAAGACATATGATGTATTGAAAT	GATTATCACAAAGAAAATAGTGATATTTCAGTTTAT
CTTGAACCAAGACATATGATGTATTGAAAT	ATAAAAAGTTTGGAACAACAATTATTACTAAAGCTC
CTTGAACCAAGACATATGATGTATTGAAAT	ATTTTATTAGATTGGATTGAAGAGTTTCCAGAAAC
CTTGAACCAAGACATATGATGTATTGAAAT	TTCGTATAATCAAAAAATTCAAATTCTTTATTTG
CTTGAACCAAGACATATGATGTATTGAAAT	ACACTTTCACCTGTCACTCTACTCGTGGCACAGAG
CTTGAACCAAGACATATGATGTATTGAAAT	TAAAGAAGTTAAAGACTATTTTGAAAAACTTTGTGATG
CTTGAACCAAGACATATGATGTATTGAAAT	AAAACAAGACCTATACAAATAGAGCCTTGGTTTTTT
CTTGAACCAAGACATATGATGTATTGAAAT	GGATAAACCACAAGAAGATATTAATATTGTCAATAC
CTTGAACCAAGACATATGATGTATTGAAAT	ATATCTCATTTGGCAATTCAATATAAATCTTATTAT
CTTGAACCAAGACATATGATGTATTGAAAT	AAAGTTACTCAATTTGGTTGGGTTGTTAGCCCTA
CTTGAACCAAGACATATGATGTATTGAAAT	AAAGATGATAAGACTATATTAGATAGAATTCAAATT
CTTGAACCAAGACATATGATGTATTGAAAT	TTAATAACAGTTTCTGCAAATTCTTTAGCATTTT
CTTGAACCAAGACATATGATGTATTGAAAT	TGAGGAAAAAGAAAAATACAAAAGTGAATCATGGAA
CTTGAACCAAGACATATGATGTATTGAAAT	AAAATATATAAGATTAATAAGCCCACAATCAAAAG
CTTGAACCAAGACATATGATGTATTGAAAT	ATAAAACAGAAAGAGAAATGAGAAAAATCTTAGGA
CTTGAACCAAAACATATGATGTATTGAAAT	TAATTTTTATACTTGCAATAATTGCGGAATGACACT
CTTGAACCAAGACATATGATATATTGAAAT

>NC_014166|1|1|2825927-2827004|CRISPRCasFinder
CTTGAACCAAGACATATGATGTATTGAAAT	GATTATCACAAAGAAAATAGTGATATTTCAGTTTAT
CTTGAACCAAGACATATGATGTATTGAAAT	ATAAAAAGTTTGGAACAACAATTATTACTAAAGCTC
CTTGAACCAAGACATATGATGTATTGAAAT	ATTTTATTAGATTGGATTGAAGAGTTTCCAGAAAC
CTTGAACCAAGACATATGATGTATTGAAAT	TTCGTATAATCAAAAAATTCAAATTCTTTATTTG
CTTGAACCAAGACATATGATGTATTGAAAT	ACACTTTCACCTGTCACTCTACTCGTGGCACAGAG
CTTGAACCAAGACATATGATGTATTGAAAT	TAAAGAAGTTAAAGACTATTTTGAAAAACTTTGTGATG
CTTGAACCAAGACATATGATGTATTGAAAT	AAAACAAGACCTATACAAATAGAGCCTTGGTTTTTT
CTTGAACCAAGACATATGATGTATTGAAAT	GGATAAACCACAAGAAGATATTAATATTGTCAATAC
CTTGAACCAAGACATATGATGTATTGAAAT	ATATCTCATTTGGCAATTCAATATAAATCTTATTAT
CTTGAACCAAGACATATGATGTATTGAAAT	AAAGTTACTCAATTTGGTTGGGTTGTTAGCCCTA
CTTGAACCAAGACATATGATGTATTGAAAT	AAAGATGATAAGACTATATTAGATAGAATTCAAATT
CTTGAACCAAGACATATGATGTATTGAAAT	TTAATAACAGTTTCTGCAAATTCTTTAGCATTTT
CTTGAACCAAGACATATGATGTATTGAAAT	TGAGGAAAAAGAAAAATACAAAAGTGAATCATGGAA
CTTGAACCAAGACATATGATGTATTGAAAT	AAAATATATAAGATTAATAAGCCCACAATCAAAAG
CTTGAACCAAGACATATGATGTATTGAAAT	ATAAAACAGAAAGAGAAATGAGAAAAATCTTAGGA
CTTGAACCAAAACATATGATGTATTGAAAT	TAATTTTTATACTTGCAATAATTGCGGAATGACACT
CTTGAACCAAGACATATGATATATTGAAAT

>NC_014166|1|1|2825927-2827069|CRT
CTTGAACCAAGACATATGATGTATTGAAAT	GATTATCACAAAGAAAATAGTGATATTTCAGTTTAT
CTTGAACCAAGACATATGATGTATTGAAAT	ATAAAAAGTTTGGAACAACAATTATTACTAAAGCTC
CTTGAACCAAGACATATGATGTATTGAAAT	ATTTTATTAGATTGGATTGAAGAGTTTCCAGAAAC
CTTGAACCAAGACATATGATGTATTGAAAT	TTCGTATAATCAAAAAATTCAAATTCTTTATTTG
CTTGAACCAAGACATATGATGTATTGAAAT	ACACTTTCACCTGTCACTCTACTCGTGGCACAGAG
CTTGAACCAAGACATATGATGTATTGAAAT	TAAAGAAGTTAAAGACTATTTTGAAAAACTTTGTGATG
CTTGAACCAAGACATATGATGTATTGAAAT	AAAACAAGACCTATACAAATAGAGCCTTGGTTTTTT
CTTGAACCAAGACATATGATGTATTGAAAT	GGATAAACCACAAGAAGATATTAATATTGTCAATAC
CTTGAACCAAGACATATGATGTATTGAAAT	ATATCTCATTTGGCAATTCAATATAAATCTTATTAT
CTTGAACCAAGACATATGATGTATTGAAAT	AAAGTTACTCAATTTGGTTGGGTTGTTAGCCCTA
CTTGAACCAAGACATATGATGTATTGAAAT	AAAGATGATAAGACTATATTAGATAGAATTCAAATT
CTTGAACCAAGACATATGATGTATTGAAAT	TTAATAACAGTTTCTGCAAATTCTTTAGCATTTT
CTTGAACCAAGACATATGATGTATTGAAAT	TGAGGAAAAAGAAAAATACAAAAGTGAATCATGGAA
CTTGAACCAAGACATATGATGTATTGAAAT	AAAATATATAAGATTAATAAGCCCACAATCAAAAG
CTTGAACCAAGACATATGATGTATTGAAAT	ATAAAACAGAAAGAGAAATGAGAAAAATCTTAGGA
CTTGAACCAAAACATATGATGTATTGAAAT	TAATTTTTATACTTGCAATAATTGCGGAATGACACT
CTTGAACCAAGACATATGATATATTGAAAT	TAAGATAATCAAGTTTTCCAAAACGAGGAAACTCT
CTTGAACCAAGACATAATGTATTGAAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014166.1\|WP_013136586.1\|2819256_2820180_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_014166.1\|WP_013136590.1\|2823935_2824430_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_014166.1\|WP_013136588.1\|2820898_2823115_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
NC_014166.1\|WP_013136583.1\|2816225_2816684_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269820
NC_014166.1\|WP_013136587.1\|2820179_2820899_+\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_014166.1\|WP_013136599.1\|2831593_2832007_+\|cytochrome-c-550-PedF	unknown	unknown	gnl\|CDD\|275287
NC_014166.1\|WP_013136593.1\|2827302_2828151_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227259
NC_014166.1\|WP_013136602.1\|2833624_2834542_+\|quinoprotein-relay-system-zinc-metallohydrolase-1	unknown	unknown	gnl\|CDD\|275351
NC_014166.1\|WP_013136585.1\|2817510_2819247_+\|hypothetical-protein	cas8b1	mkCas0174_cas8b1_CAS-I-B	unknown
NC_014166.1\|WP_013136584.1\|2816782_2817520_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_014166.1\|WP_013136591.1\|2824442_2825447_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_014166.1\|WP_013136589.1\|2823126_2823939_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NC_014166.1\|WP_013136600.1\|2832010_2832877_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NC_014166.1\|WP_013136598.1\|2830492_2831446_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_014166.1\|WP_013136592.1\|2825448_2825763_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014166.1\|WP_013136597.1\|2829755_2830493_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NC_014166.1\|WP_013136596.1\|2829055_2829754_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_014166.1\|WP_013136601.1\|2832887_2833628_+\|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier	unknown	unknown	gnl\|CDD\|275350
NC_014166.1\|WP_013136595.1\|2828660_2829059_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225564
NC_014166.1\|WP_013136594.1\|2828226_2828664_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
NC_014166.1\|WP_013136586.1\|2819256_2820180_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.77189e-37
NC_014166.1\|WP_013136590.1\|2823935_2824430_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.09214e-54
NC_014166.1\|WP_013136588.1\|2820898_2823115_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	4.2481e-70
NC_014166.1\|WP_013136583.1\|2816225_2816684_+\|hypothetical-protein	gnl\|CDD\|269820	cd14797, DUF302, Uncharacterized domain family DUF302. These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.	4.56664e-06
NC_014166.1\|WP_013136587.1\|2820179_2820899_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	4.27119e-15
NC_014166.1\|WP_013136599.1\|2831593_2832007_+\|cytochrome-c-550-PedF	gnl\|CDD\|275287	TIGR04494, cytochrome_c550, cytochrome c-550 PedF. Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.	2.24603e-82
NC_014166.1\|WP_013136593.1\|2827302_2828151_+\|hypothetical-protein	gnl\|CDD\|227259	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown].	1.30512e-13
NC_014166.1\|WP_013136602.1\|2833624_2834542_+\|quinoprotein-relay-system-zinc-metallohydrolase-1	gnl\|CDD\|275351	TIGR04558, beta-lactamase_domain-containing_protein, quinoprotein relay system zinc metallohydrolase 1. By homology, members are Zn metallohydrolases in the same family as the SoxH protein associated with sulfate metabolism, Bacillus cereus beta-lactamase II (see PDB:1bc2), and, more distantly, hydroxyacylglutathione hydrolase (glyoxalase II). All members occur in genomes with both PQQ biosynthesis and a PQQ-dependent (quinoprotein) dehydrogenase that has a motif of two consecutive Cys residues (see TIGR03075). The Cys-Cys motif is associated with electron transfer by specialized cytochromes such as c551. All these genomes also include a fusion protein (TIGR04557) whose domains resemble SoxY and SoxZ from thiosulfate oxidation. A conserved Cys in this fusion protein aligns to the Cys residue in SoxY that carries sulfur cycle intermediates. In many genomes, the genes for PQQ biosynthesis enzymes, PQQ-dependent enzymes, their associated cytochromes, and members of this family are clustered. Note that one to three closely related Zn metallohydrolases may occur; this family represents a specific clade among them. [Unknown function, Enzymes of unknown specificity].	3.93802e-169
NC_014166.1\|WP_013136584.1\|2816782_2817520_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.33538e-11
NC_014166.1\|WP_013136591.1\|2824442_2825447_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.9118e-140
NC_014166.1\|WP_013136589.1\|2823126_2823939_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.56203e-15
NC_014166.1\|WP_013136600.1\|2832010_2832877_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	9.11281e-20
NC_014166.1\|WP_013136598.1\|2830492_2831446_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.83721e-10
NC_014166.1\|WP_013136592.1\|2825448_2825763_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.15286e-17
NC_014166.1\|WP_013136597.1\|2829755_2830493_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.96699e-42
NC_014166.1\|WP_013136596.1\|2829055_2829754_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.11677e-72
NC_014166.1\|WP_013136601.1\|2832887_2833628_+\|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier	gnl\|CDD\|275350	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier. Members of this family are fusion proteins, with the N-terminal region similar to the sulfur oxidation protein SoxY (TIGR04488) and the C-terminal region similar to sulfur oxidation protein SoxZ (TIGR04490). Members occur exclusively in species with PQQ-dependent enzymes that have a Cys-Cys motif (TIGR03075) for electron transfer to c550 family cytochrome. By homology to the sulfur moiety-binding subunit SoxY, we predict the conserved Cys in the Gly-Gly-Cys motif binds some unknown adduct.	5.80983e-45
NC_014166.1\|WP_013136595.1\|2828660_2829059_-\|hypothetical-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	3.55195e-23
NC_014166.1\|WP_013136594.1\|2828226_2828664_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.80669e-16

>NC_014166.1|WP_013136592.1|2825448_2825763_+|CRISPR-associated-endonuclease-Cas2
MAKKQNINYNYVFLFYDIADEFSDIGKYRVAKVFKICKQYLKHHQKSIFRGNITPSDQIMLETKLKKVIDKDLDFISIIKVQNSGSFAEVIIGNDKKESESIFI
>NC_014166.1|WP_013136591.1|2824442_2825447_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MAKNHTRYIFSMGELKRKDNSIAFRNEKGNFYIPIQDTRELYCMNEVSFNTKFLDFISKSGITLHLFNYHGNYSGSFYPKEQLVSGDLTIKQSLCFIERRLHIAKAIVRAIALNIHESLYHYFRHGKKDLKQVLDWLKNDLEKLLNKELTIEQILFVEGQVWNRFYDSFKYFLPEDFIMNKRVKRPPDNPINALVSFGNTLLYTKTISSIYETHLNQTISFLHSPREGRFSLSLDISEAFKPIIVFKTIFDLVGKKRIQVTKHFDKSLNYALLNEEGKKIFIDAFETRINETFMHKKLKRKTSFKNCIKLDGYKLIKYIVEEKEFSPFLLKEKM
>NC_014166.1|WP_013136590.1|2823935_2824430_+|CRISPR-associated-protein-Cas4
MKINGTLISYFFICKTKLWLHANRINLEDNSEDVRIGKILHEINESKSKKAEISIDNIKIDKLTRDYLVEVKKSDSDIESVKWQVLLYLYKLKQKGVERKGKIEFIEKNKQDKKIHYIDLDEVNEKELLKICDKIEALINAPVPPTAKFENKCKKCAYYEYCFI
>NC_014166.1|WP_013136589.1|2823126_2823939_+|Bro-N-domain-containing-protein
MDKIQLFESKQIRSHWDENSELWYFSIVDVVTILTQSASPRKYWNKLKQRLKEEGNETVTNCHQLKMKASDGKMRLTDVATTEQLLRLIQSIPSPQAEPFKMWLAKVGYERIEAIQDPEKSIDAALRDYMKLGYSEKWINQRLKSIEVRKELTDEWKQRGVEEGKEFALLTDIISKAWSGNTTKEYKKLKNLKKENLRDNMTNLELVLNMLAEATTTEISKEKKPDGLDESKKIAKEGGTIAGDTRKAIEEKTGKRVVTNQNAKDLLENK
>NC_014166.1|WP_013136588.1|2820898_2823115_+|CRISPR-associated-helicase/endonuclease-Cas3
MKILAKKIVEDEQIKTQTLQEHTNWVMEEALKLIDDKSLSKVSIVSGWKKEKILDLIFFSCYFHDIGKATIEFQNTINNGTNSYHSLYSVSVLNQINEFNISGEEDSTINLLLTLCLTHHTLLPYNSNNAYFTFLDSVENIFFNYKDSYKNYLNKECLYDFDFEIEEDIEDILFDIEDDLKYIKENHKLRTLYTYCSGILNFADWLASARFNKSLPKTYFEKIPTKEIFLEQLSENNPSFKKLRDFQDDLSILGKSVLVEIPTGEGKTEGSLLWAIKNLYDKNSKVIYTLPTQVTSNKLYERVTSLFDKNECGLIHSSSKLYLEKEYEKEHGLVDDFFKSEITFNKNFSKPVTVSTIDSLLKFFINIGRFNIATKNYLNSVVIIDEVHCYDFKLMGFLKKFLELCNEFDVKVCLMSASIPKKIKELLGIENYPIITEKKLFKKKANEIIKIDEELDENFDLIIKKFKENKNILIIRNSVKSATDTYKKLRDDYGIDEDDLILYHSTFKKRDKNQKEKDIFDKLDGNKPFILIATQIVEISLDIDFDIMFTDNAPIDSLIQRFGRVNRKKDEIKKGVIYIFKYEKEFPYKSKYLIQITFDTIENGYFELGEYVKWLNIVYDKVFKNDIKINNEIDILFKQGYKKYDDVLKELDGIKKSEDNYDLRHIEQSKVDYLLVDDFLDDNIDSKKFHEYTISLPNYYGKKYLYMSQKESFYKVLDLKYNYRQGLLIDDDKSCEFM
>NC_014166.1|WP_013136587.1|2820179_2820899_+|CRISPR-associated-protein-Cas5
MKVIRFEIQGLMNSYRIPFFRTYHKSFLAPPKTTIIGMLCNISLKSQKEFFEILDKEVFEVSVVINEIKGRAKDLWSYKTLEKKNMGKSVVRRDKLFSPKYTIYLKIKDKKLYNEILENLRLPKNTPSLGMDDELIEIKNIKTLEMEEHDTNKINSIFLDKNISYKAYVKDLSKSIELPTINLASTKFIAFDKKNKRIPKESNKDFEFSQVEYLNCEIEFAKDIESFVDVELNNKVVFY
>NC_014166.1|WP_013136586.1|2819256_2820180_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MFLNIAYITKVNLASLNGSEGTGGNITEMKKIASANGEEYAYVSGQALRRYFKETLLQLGQRITEVSENGNPTFRDENGKYIDLDKKLKDVKELAYKKFIDLDLFGYMFPNGGRRWSPVKVTPLISILPYKGEYDYLTRKQKPKKENEKSGNIVQIEIDTLNFMRGNIMVNTSHIGNEIDEYTYDVNEILDNEEKNSRLNIFLDAIKNFNGGAKQSRNLEDISPKFIVIAKQKTGNPFLLNSLDVDIEGNINIENIKESIEDTDVESLTIGISKGIFKNEEEIKNSFENVVSVAKAIEEYKDILKSK
>NC_014166.1|WP_013136585.1|2817510_2819247_+|hypothetical-protein
MEVVQENLFNVTQKDKIVSKKFTVKDVFFNNGLVNLYQFLQEYNFDINIKLEKSFLELKYQDEEIFFKILNKFLEEKEIVTFNKKNTRIFFDTNTNEFTQAAKVNIKNGGSNDSKNALIRVHIDDLSISKEELLKKEEKYIQENENHTKDEYKIEKCYYDKSKQEIYVLSSLQEHIEKFSSYLVKDDFLALNSSIHNFEDGQKSFHDMIKISKNYNIDKWEALIYWFGTKIQHYFNFAFFIYPNSSNIEALNIFKRDLKIKDEKNSFRDENDTLITTNTNVNFYDQLRKDKIFGKKFKNFYISKSDVEFELKFFMYLFSKISHIESSYEKALDKDKMTKRKEKIFNALQEISFVIYVEDGTFKKSLNEYTKAYQFIQFLEELKKTKINVQKEYESNLFIYLADMIVTFGLSQNPKEININFQKWCKAFLEFKSLRKYYYTTSFNILKNESKSFGRGLYEFEKIYLKNIMKGKNMSTHEKSKVLGESIGYFCAELGDKDLLFKLRNVKNYKQLLSYFKDLKFASLKNEDKARFSKEFNESLEEIIEILESDWEIIRDYISIYAIDKFKVTNYAKLQQNK
>NC_014166.1|WP_013136584.1|2816782_2817520_+|CRISPR-associated-endoribonuclease-Cas6
MKYFELKCLAYIKKEIELNESFDALSSYINYCFTKDEVLKKLHEEKDFKNYCFGNFYPIEKNKVYKKGNTYEFVIRSLDEEFIYKLQKLLRENVNNSFFQVLQATKKVVKQFFISELYTVTPTITTVKDENNKSIFWTIDKDGDILKLQEQLQKNLLKKYENFYNEKLEPTQNFIQLLEIKNQKPQSIYFMKKINDDKSIRVRLFGNKFKIVPNEDEVSQKLAFVALACGLGEKQSYGGGFCLWK
>NC_014166.1|WP_013136583.1|2816225_2816684_+|hypothetical-protein
MKAFFLFSLLFCFLNADYKIIENKNLFLVEVTNSSFEKDLVDLKDEISYEGFTIVYELNLAKATNELATFLKEKGVLKKGINLGICKSSFTLQMVKENFNNINYCPLAISIYKKDKNKTYISYKFYKTFKDNDKIANKINETLKKLILDSLE
>NC_014166.1|WP_013136593.1|2827302_2828151_+|hypothetical-protein
MKKSLGILIFVILAFIACVNTTNLQKQNKQITKKEKVVELLNSIETGDTIPVSYINQNKYIQHNLALKDGVKGFAEILSKLPKGNAKVEVKRAFEDGNYVFTHTKYNFFGEKVGFDVFRFENGKIVEHWDNLQPISKTTANGRSQIDGATKVEDIEKTIQNKLLIKNFVNDILMGKNPNKITNYISTKKYLQHNPDVKDGLSGLGEALSALSKAGMPMTYEKNHMILGEGNFVLAISEGIFMNKKASFYDLFRIENGKIVEHWDTIEEILPKSKWQNSNGKF
>NC_014166.1|WP_013136594.1|2828226_2828664_+|MarR-family-transcriptional-regulator
MKKELIALASKVTDLSNKLIISQLEKNNINGIVPSHGSIFILLYENEQVTMKDIADFVHKTKPTVTILVDKLVKMGYVKKEKSKTDSRVTFVELTQKGKDLKPVFEEISNNINNIIYKNLTTNEAVQTEKTLRKVIANLNFEDIV
>NC_014166.1|WP_013136595.1|2828660_2829059_-|hypothetical-protein
MKKLIFISVFASFLSAQNSMMQIYKPVTGTCPQDWIKEMTKEVKEVNVVSLMNVKNLKKEIGIPKEIQSCNTSIIDDYVFEGNVPARAIKDFFKRKPKNAIGLSLPAYENEKSPKTVFVLFEDKTYKIFGKY
>NC_014166.1|WP_013136596.1|2829055_2829754_-|ABC-transporter-ATP-binding-protein
MLNINILEKKFGKTIILKDINIFIEEGELISIIGPSGCGKTTILNIVSGLDTNYIGSLSGDFSKLSFMFQDDRLLPWLNIKDNLLLVSKTKDIEEIEELLSLIGLNHILNEYPNRLSGGMKRRIALIRAFINRPKIIVLDEPFISLDYPTSMALKKDFLIFCKKFNPTVILVTHDLSEAVHLSSRIIFLSSTYATKILDYKNDNNQESDIKKIDEKKNIILDLYPKILEGKI
>NC_014166.1|WP_013136597.1|2829755_2830493_-|ABC-transporter-permease-subunit
MQKNQTKIFSFMLFLILWQALSLLINSDLFPSIIDIVKSLEEHIKNKDLFWNLFITLYRVFVAFFITMSIGIIFGLLMGFYKKVDDFFDFLLILGLNIPALVTIIICYIWFGLTDFSAILAVVINKVPIVIVNIREGTKAFDKKYMDFAKIYKLSRKEIFLNIYLPQLYPYLLATTRLSLSLIWKIVLVVELLGRSDGIGFQISMFYQYFDISSILAYSFAFISVILLIEHKILKPIDIKLKAWK
>NC_014166.1|WP_013136598.1|2830492_2831446_-|ABC-transporter-substrate-binding-protein
MKCKIFLVFIFFLINLNAQQKLRVGVLAYGTVNWGLEILKQNGLDKKNGFDLEIVKLASKNAQLISLQANKVDLIVNDWIWVNKQKSKGKNFLFYPYSKALGTLMVNKQSGINNLSDLKNGELGISGGIYDKTWLLFRAFYKKENGKKFEEIVKPVFASPPILYKKMMDNSLNAAINFWHFNAKLPKEKFEPLVQISDILKSLGVNSDISFVGWVFNKDFASKNKALVNTFLNTSLQSKELLASDDKQWDKIKKLVKTKDNKIFESLKQEYIKGIIKEFTKEDISELRKVYKILSKEAGANYISKNVPFDESIFWLK
>NC_014166.1|WP_013136599.1|2831593_2832007_+|cytochrome-c-550-PedF
MNKIQKLGLTVLLSTVFAYGHGDVVPQPVDTKGLKPLGKEWLETNPYVGNKKAIEIGKHGYEENCARCHGLEVVSGGIAPDLRYLDTGADGDEWFMERIRGGAVRNGNVYMPPFEGILSQEAMWAIRSFIVSKHTEE
>NC_014166.1|WP_013136600.1|2832010_2832877_+|transporter-substrate-binding-domain-containing-protein
MSILKSALIILILALSIHARSIEDIKKSGEIIIAVYKDFPPYSFKEKGVAKGIDVDLGKKVAKALGVKPVWYFTGFDEDLAADLRNTISRGNKVHKNRADVMFRIPYDYTYMRLTDKQTGELQNDMVTIKGPYQSEKWVIATHKKIIPKITTLGIFAYQTIGVEVDMLPDLHLSGFARGLIRKNVKHYRNFNDAIRDFKLGKIDAIAGLKTQLEYLLDYKNNKDKYYISDNIPMMKSKWDLATAVRSNYRALSYFIDGVIEKAYKNGEIKNIFNKYGVDYLPPIARTQ
>NC_014166.1|WP_013136601.1|2832887_2833628_+|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier
MKNIFFALFLIITSQNLFANNPISSPTFKDIINDVIKGEKYIFDDKNIIVDVPKFADNPIQVPIFIDGKNIKNAKRMIVFADLNPIPVIVDMKLIDLLPLISVNIKVAQETPLRALIQDDKGVWHIGSANIKSFGGGCSVSSVSSSDTNFDKYLGKAKGEIFKKGDITRIKASIFHPMETGLVFGNSAFYINKISIFAKNKKLSDITSYSAISENPRFIFETKNKSEDYKINFYDTDANEFSLDIK
>NC_014166.1|WP_013136602.1|2833624_2834542_+|quinoprotein-relay-system-zinc-metallohydrolase-1
MKTLLLLLSIFSFCFSFDFKLKPIKLAKNSYYFYGKEEYFSVKNGGDISNTAFIITKNSVILIDTGSSYEYAEQVKKKIKQITNKPIKYVINTHHHPDHFLGNNAFSNSEIFSTEFTKNEIAQNGDLYIANLNNLVQGAMNGTKIKVPNEILKSNELNLDGYKLKLFYLDGHTKSDLVIYDENTKILYAADLVFNKRTLATPHANIPDWIKSLEKLKKINYKILVPGHGKIDRTKNAINEDIAYLHYLDNTLKNSARHGFDIFEILARPIPKEFKSFTMFKEEFERSIINLYPKYEKRRMKNYQE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014166_1	1.4\|2826154\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826154-2826187	34	MH617456	Microviridae sp. isolate ctdc47, complete genome	2357-2390	8	0.765
NC_014166_1	1.4\|2826154\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826154-2826187	34	NC_010937	Clostridium perfringens plasmid pCW3, complete sequence	28281-28314	8	0.765
NC_014166_1	1.4\|2826154\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826154-2826187	34	NC_019687	Clostridium perfringens plasmid pCpb2-CP1, complete sequence	18050-18083	8	0.765
NC_014166_1	1.4\|2826154\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826154-2826187	34	NZ_CP025503	Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence	9441-9474	8	0.765
NC_014166_1	1.4\|2826154\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826154-2826187	34	NC_019257	Clostridium perfringens plasmid pJIR3844, complete sequence	18598-18631	8	0.765
NC_014166_1	1.12\|2826679\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826679-2826712	34	NC_017139	Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence	52405-52438	8	0.765
NC_014166_1	1.12\|2826679\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826679-2826712	34	NZ_CP046125	Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence	84798-84831	8	0.765
NC_014166_1	1.12\|2826679\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826679-2826712	34	NZ_CP023514	Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence	66608-66641	8	0.765
NC_014166_1	1.12\|2826679\|34\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826679-2826712	34	MN693255	Marine virus AFVG_25M362, complete genome	31353-31386	8	0.765
NC_014166_1	1.8\|2826417\|36\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826417-2826452	36	NZ_MF150536	Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence	6455-6490	9	0.75
NC_014166_1	1.13\|2826743\|36\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826743-2826778	36	NC_017543	Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence	250439-250474	10	0.722
NC_014166_1	1.13\|2826743\|36\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826743-2826778	36	X96987	Bacteriophage GA-1 complete genome sequence	9311-9346	10	0.722
NC_014166_1	1.13\|2826743\|36\|NC_014166\|PILER-CR,CRISPRCasFinder,CRT	2826743-2826778	36	NC_002649	Bacillus phage GA-1, complete genome	9311-9346	10	0.722
NC_014166_1	1.17\|2827005\|35\|NC_014166\|CRT	2827005-2827039	35	NZ_CP015439	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence	244765-244799	10	0.714

1. spacer 1.4|2826154|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to MH617456 (Microviridae sp. isolate ctdc47, complete genome) position: , mismatch: 8, identity: 0.765

ttcgtataatcaaaaaattcaaattctttatttg	CRISPR spacer
atcatataatcaaaaaattcaaattgtcaaataa	Protospacer
 **.********************* *. * * .

2. spacer 1.4|2826154|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NC_010937 (Clostridium perfringens plasmid pCW3, complete sequence) position: , mismatch: 8, identity: 0.765

ttcgtataa---tcaaaaaattcaaattctttatttg	CRISPR spacer
---cgataagcttcaaaaaattcaatttcattattta	Protospacer
     ****   ************* *** ******.

3. spacer 1.4|2826154|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NC_019687 (Clostridium perfringens plasmid pCpb2-CP1, complete sequence) position: , mismatch: 8, identity: 0.765

ttcgtataa---tcaaaaaattcaaattctttatttg	CRISPR spacer
---cgataagcttcaaaaaattcaatttcattattta	Protospacer
     ****   ************* *** ******.

4. spacer 1.4|2826154|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025503 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence) position: , mismatch: 8, identity: 0.765

ttcgtataa---tcaaaaaattcaaattctttatttg	CRISPR spacer
---cgataagcttcaaaaaattcaatttcattattta	Protospacer
     ****   ************* *** ******.

5. spacer 1.4|2826154|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NC_019257 (Clostridium perfringens plasmid pJIR3844, complete sequence) position: , mismatch: 8, identity: 0.765

ttcgtataa---tcaaaaaattcaaattctttatttg	CRISPR spacer
---cgataagcttcaaaaaattcaatttcattattta	Protospacer
     ****   ************* *** ******.

6. spacer 1.12|2826679|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 8, identity: 0.765

ttaataacagtttctgcaaattctttagcatttt-----	CRISPR spacer
ataataacaatttttgcaaattctt-----ttttacaaa	Protospacer
 ********.***.***********     ****

7. spacer 1.12|2826679|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046125 (Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttaataacagtttctgcaaattctttagcatttt	CRISPR spacer
ttagggattgtttctgcataatctttagcatttg	Protospacer
***. .*. ********* * ************

8. spacer 1.12|2826679|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023514 (Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ttaataacagtttctgcaaattctttagcatttt	CRISPR spacer
ttagggattgtttctgcataatctttagcatttg	Protospacer
***. .*. ********* * ************

9. spacer 1.12|2826679|34|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to MN693255 (Marine virus AFVG_25M362, complete genome) position: , mismatch: 8, identity: 0.765

ttaataacagtttctgcaaattctttagcatttt	CRISPR spacer
tcatttaatttttctgcaaaatctttagcttttt	Protospacer
*.* * *   ********** ******** ****

10. spacer 1.8|2826417|36|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF150536 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence) position: , mismatch: 9, identity: 0.75

ggataaaccacaagaagatattaatattgtcaatac	CRISPR spacer
agcaaagaaacaagaagatattaaaattatcaatag	Protospacer
.*  **.  *************** ***.******

11. spacer 1.13|2826743|36|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 10, identity: 0.722

tgaggaaaaagaaaaatacaaaagtgaatcatggaa	CRISPR spacer
acacagaaaagaaaaaaagaaaagtgaatcatatag	Protospacer
  * ..********** * *************. *.

12. spacer 1.13|2826743|36|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to X96987 (Bacteriophage GA-1 complete genome sequence) position: , mismatch: 10, identity: 0.722

tgaggaaaaagaaaaatacaaaagtgaatcatggaa	CRISPR spacer
tgtattaaaagaaatatacaaaaatgaatcatctgt	Protospacer
** .  ******** ********.********  .

13. spacer 1.13|2826743|36|NC_014166|PILER-CR,CRISPRCasFinder,CRT matches to NC_002649 (Bacillus phage GA-1, complete genome) position: , mismatch: 10, identity: 0.722

tgaggaaaaagaaaaatacaaaagtgaatcatggaa	CRISPR spacer
tgtattaaaagaaatatacaaaaatgaatcatctgt	Protospacer
** .  ******** ********.********  .

14. spacer 1.17|2827005|35|NC_014166|CRT matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 10, identity: 0.714

taagataatcaagttttccaaaacgaggaaactct	CRISPR spacer
cgtcaaaatcaaattttccaaaaggaggaaacaac	Protospacer
..  * ******.********** ********  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

479314 : 489352

Campylobacter_virus(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013134302.1\|479314_480307_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	2.5e-33	34.5
WP_013134303.1\|480409_480754_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_013134304.1\|480777_481716_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_013134305.1\|481757_483017_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_013134306.1\|483149_483380_-	acyl carrier protein	M4QDG5	Prochlorococcus_phage	1.2e-07	55.2
WP_013134307.1\|483457_484201_-	3-oxoacyl-ACP reductase FabG	A0A0N9R355	Chrysochromulina_ericina_virus	3.1e-12	26.8
WP_013134308.1\|484267_485017_-	7-carboxy-7-deazaguanine synthase QueE	H6SUE5	Campylobacter_virus	2.7e-48	41.7
WP_013134309.1\|485009_485546_-	6-carboxytetrahydropterin synthase	H6SU72	Campylobacter_virus	7.8e-42	48.0
WP_013134310.1\|485545_486217_-	7-cyano-7-deazaguanine synthase QueC	A0A1U9WRB5	Streptococcus_virus	5.5e-29	36.2
WP_013134311.1\|486209_487430_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_013134312.1\|487501_487906_+	hypothetical protein	NA	NA	NA	NA
WP_013134313.1\|487905_488574_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_013134314.1\|488680_489352_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.2e-11	26.8

DBSCAN-SWA_2

932132 : 939913

Mimivirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013134746.1\|932132_932930_-	DNA ligase	A0A1X9VNY8	Mimivirus	9.5e-28	33.5
WP_013134747.1\|933041_934052_+	ADP-glyceromanno-heptose 6-epimerase	A0A1D8KKD9	Synechococcus_phage	7.3e-25	29.6
WP_013134748.1\|934051_935482_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A0K0KVL9	Prochlorococcus_phage	7.9e-25	46.5
WP_013134749.1\|935483_936056_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.0e-15	33.3
WP_013134750.1\|936056_936599_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.9e-30	43.9
WP_041660335.1\|936607_937810_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_013134752.1\|937818_938514_+	DedA family protein	NA	NA	NA	NA
WP_013134753.1\|938494_939913_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	2.2e-43	37.4

DBSCAN-SWA_3

1691888 : 1747558

Klosneuvirus(25.0%)

plate,tRNA,integrase

attL 1686986:1687003|attR 1744052:1744069

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1686986:1687003	attL	NA	NA	NA	NA
WP_013135489.1\|1691888_1693040_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013135490.1\|1693041_1693347_+	hypothetical protein	NA	NA	NA	NA
WP_013135491.1\|1693472_1693874_+	hypothetical protein	NA	NA	NA	NA
WP_041660156.1\|1694263_1694485_+	hypothetical protein	NA	NA	NA	NA
WP_013135493.1\|1694465_1695602_+	phosphoadenosine phosphosulfate reductase family protein	F8UBB2	Clostridium_phage	2.2e-54	40.3
WP_013135494.1\|1695589_1696981_+	hypothetical protein	NA	NA	NA	NA
WP_013135495.1\|1696977_1697175_+	hypothetical protein	NA	NA	NA	NA
WP_164969706.1\|1697174_1697585_+	glycoside hydrolase family protein	A0A223LHH7	Pseudoalteromonas_phage	4.7e-31	50.7
WP_013135497.1\|1697586_1697787_+	hypothetical protein	NA	NA	NA	NA
WP_013135498.1\|1697790_1698876_+	hypothetical protein	NA	NA	NA	NA
WP_013135499.1\|1698888_1699056_+	hypothetical protein	NA	NA	NA	NA
WP_013135500.1\|1699048_1699900_+	hypothetical protein	NA	NA	NA	NA
WP_013135501.1\|1699913_1700717_+	hypothetical protein	NA	NA	NA	NA
WP_013135502.1\|1700713_1701076_+	hypothetical protein	NA	NA	NA	NA
WP_013135503.1\|1701106_1701454_+	hypothetical protein	NA	NA	NA	NA
WP_013135504.1\|1701616_1702015_+	hypothetical protein	NA	NA	NA	NA
WP_013135505.1\|1702099_1703317_+	collagen-like protein	NA	NA	NA	NA
WP_013135506.1\|1703319_1703616_+	hypothetical protein	NA	NA	NA	NA
WP_013135507.1\|1703616_1703835_+	hypothetical protein	NA	NA	NA	NA
WP_013135508.1\|1704117_1705149_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.0e-53	36.3
WP_013135509.1\|1705164_1705656_-	hypothetical protein	NA	NA	NA	NA
WP_013135510.1\|1705725_1707303_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.7e-141	50.3
WP_013135511.1\|1707324_1708647_-	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA
WP_013135512.1\|1708668_1710486_-	biotin attachment protein	NA	NA	NA	NA
WP_013135513.1\|1710491_1710743_-	OadG family protein	NA	NA	NA	NA
WP_013135515.1\|1711052_1711709_+	peptidase S24	F1C5C2	Cronobacter_phage	3.5e-12	36.8
WP_013135516.1\|1711705_1712695_-	peptidoglycan synthetase	NA	NA	NA	NA
WP_013135517.1\|1712703_1714650_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	4.9e-94	38.5
WP_013135518.1\|1714663_1714864_-	hypothetical protein	NA	NA	NA	NA
WP_013135519.1\|1714853_1715699_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.6e-28	34.4
WP_013135520.1\|1715698_1716202_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_013135521.1\|1716280_1716790_+	hypothetical protein	NA	NA	NA	NA
WP_013135522.1\|1716755_1718147_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_013135523.1\|1718156_1718435_-	YggT family protein	NA	NA	NA	NA
WP_013135524.1\|1718431_1719721_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_013135525.1\|1719722_1720961_-	insulinase family protein	NA	NA	NA	NA
WP_013135526.1\|1721013_1722081_-	dehypoxanthine futalosine cyclase	A9ZMK9	Mamastrovirus	5.5e-23	47.5
WP_041660416.1\|1722099_1724331_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_013135528.1\|1724469_1725300_+	prephenate dehydrogenase	NA	NA	NA	NA
WP_083772017.1\|1725296_1726082_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	4.8e-08	24.8
WP_013135530.1\|1726133_1726757_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_013135531.1\|1726759_1727311_-	HobA family DNA replication regulator	NA	NA	NA	NA
WP_013135532.1\|1727313_1728522_-	aspartate kinase	NA	NA	NA	NA
WP_013135533.1\|1728539_1729043_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_013135534.1\|1729098_1730160_+	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA
WP_013135535.1\|1730219_1731044_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_013135536.1\|1731054_1733022_+	M3 family metallopeptidase	A0A1V0SIU1	Klosneuvirus	2.7e-39	25.3
WP_013135537.1\|1733068_1733545_+	hypothetical protein	NA	NA	NA	NA
WP_013135538.1\|1733565_1733841_+	hypothetical protein	NA	NA	NA	NA
WP_013135539.1\|1733845_1734901_+\|integrase	tyrosine-type recombinase/integrase	E2ELN7	Clostridium_phage	1.6e-06	23.4
WP_013135540.1\|1735157_1736636_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_013135541.1\|1736647_1737136_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_013135542.1\|1737145_1738621_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_013135543.1\|1738622_1739039_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_013135544.1\|1739028_1740801_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_013135545.1\|1740809_1741802_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_013135546.1\|1741801_1744336_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.1e-101	35.1
1744052:1744069	attR	NA	NA	NA	NA
WP_013135548.1\|1744483_1745767_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_013135549.1\|1745777_1746227_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_013135550.1\|1746226_1747558_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage