CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014100	Caulobacter segnis ATCC 21756, complete sequence	3 crisprs	csa3,WYL,cas3,DinG,DEDDh	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014100_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014100_1

1599752-1599899

Orphan

Consensus_repeat	Method
TCGAAGTCAGCGTGATGGGCTCGGGCGACGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_014100_1

>merge|NC_014100|1|1599752-1599899|CRISPRCasFinder
TCGAGGGCAACATCGCCGGCTCCGGCGACATCACCGTCGCGGGCGGTCGTAGTCGCGCCATCGAAGTCAGCGTGATGGGCTCGGGCGACGTGACGTTCAATGGCGAGGCCGACGCGGTCGAGGTCAGCGTGATGGGCTCGGGCGACGT

>NC_014100|1|1|1599752-1599899|CRISPRCasFinder
TCGAGGGCAACATCGCCGGCTCCGGCGACAT	CACCGTCGCGGGCGGTCGTAGTCGCGCCA
TCGAAGTCAGCGTGATGGGCTCGGGCGACGT	GACGTTCAATGGCGAGGCCGACGCGG
TCGAGGTCAGCGTGATGGGCTCGGGCGACGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014100.1\|WP_013078650.1\|1604966_1605719_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
NC_014100.1\|WP_013078642.1\|1595917_1596733_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|224443
NC_014100.1\|WP_013078649.1\|1604586_1604967_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NC_014100.1\|WP_013078637.1\|1586490_1587321_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NC_014100.1\|WP_013078643.1\|1596732_1599039_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239168
NC_014100.1\|WP_010919131.1\|1604305_1604584_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NC_014100.1\|WP_013078635.1\|1585337_1586078_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NC_014100.1\|WP_013078648.1\|1603462_1604302_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NC_014100.1\|WP_013078636.1\|1586136_1586484_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_014100.1\|WP_010919129.1\|1603161_1603458_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NC_014100.1\|WP_013078645.1\|1600065_1600824_-\|hypothetical-protein	unknown	unknown	unknown
NC_014100.1\|WP_013078647.1\|1602523_1603162_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NC_014100.1\|WP_013078638.1\|1587784_1588975_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NC_014100.1\|WP_013078641.1\|1594154_1595798_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NC_014100.1\|WP_004616952.1\|1601437_1601746_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NC_014100.1\|WP_013078651.1\|1605732_1606164_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NC_014100.1\|WP_013078639.1\|1590620_1593500_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_014100.1\|WP_157038976.1\|1589116_1589575_-\|hypothetical-protein	unknown	unknown	unknown
NC_014100.1\|WP_013078646.1\|1601759_1602524_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NC_014100.1\|WP_013078640.1\|1593845_1594145_-\|UBP-type-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|366940

Protein	Function_ID	Function_description	E-value
NC_014100.1\|WP_013078650.1\|1604966_1605719_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	2.66307e-150
NC_014100.1\|WP_013078642.1\|1595917_1596733_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|224443	COG1526, FdhD, Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion].	2.23959e-95
NC_014100.1\|WP_013078649.1\|1604586_1604967_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	1.38158e-51
NC_014100.1\|WP_013078637.1\|1586490_1587321_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	2.18514e-76
NC_014100.1\|WP_013078643.1\|1596732_1599039_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|239168	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_014100.1\|WP_013078635.1\|1585337_1586078_-\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	1.20383e-70
NC_014100.1\|WP_013078648.1\|1603462_1604302_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NC_014100.1\|WP_013078636.1\|1586136_1586484_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.29995e-05
NC_014100.1\|WP_010919129.1\|1603161_1603458_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	2.18546e-44
NC_014100.1\|WP_010919131.1\|1604305_1604584_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	7.25482e-61
NC_014100.1\|WP_013078647.1\|1602523_1603162_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	3.64738e-101
NC_014100.1\|WP_013078638.1\|1587784_1588975_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NC_014100.1\|WP_004616952.1\|1601437_1601746_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.41528e-68
NC_014100.1\|WP_013078651.1\|1605732_1606164_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	2.0967e-90
NC_014100.1\|WP_013078639.1\|1590620_1593500_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	9.93561e-26
NC_014100.1\|WP_013078641.1\|1594154_1595798_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	2.97846e-70
NC_014100.1\|WP_013078646.1\|1601759_1602524_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	9.07448e-123
NC_014100.1\|WP_013078640.1\|1593845_1594145_-\|UBP-type-zinc-finger-domain-containing-protein	gnl\|CDD\|366940	pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein.	1.15822e-11

>NC_014100.1|WP_013078643.1|1596732_1599039_+|FdhF/YdeP-family-oxidoreductase
MANEKTPGVRPYRHPAGGWDALKAVAGALVDQETVIEGGKTLMRANQPEGFDCPGCAWPDPKHTSSFEFCENGAKAVAWEATSKRATPEVFARHTVSELLTWSDHAIEDLGRLTEPMAYDSADDRYKAITWDEAFARSGAALKALDDPNQAQFYASGRASNEAAFLYQLLGRRFGTNNFPDCSNMCHEPTSVGLPDSIGLGKGSVTLEDFDNADLILCFGHNPGTNHPRMMATLREASRRGATILAFNPLRERALEKFASPQDPVEMATLSSTPIASAYYQLTIGGDALLVQGMMKAVLALEARDGDVLDRAFIAEHTTGFEALVAHLEALDWPTIEAGCGLPRARIEEAAATYARAKSTILCYGMGLTQHRDSSQTVQQLVNLLLLKGNMGRPGAGICPLRGHSNVQGNRTVGIWEKPSEALSNSIRDVFGFEPPRAHGHTVIETIAAMEQGEAKVFVGLGGNFAVAAPDPVRTFAAMRKLDMAVHVATKPNRTHLLVGKAALLLPCLGRTELDVRAGVRQSVTVEDSMSMVHASRGLNPPASEHLLSEPAIVAGIATATFGEDPLIDWSGLSNDYDAIRDLIARVFPAAFEGYNEKVRVPGGFRLPVGPSDRVWKTATGKANFLVFDPKGGDPRRGDPDVLILTTLRSHDQYNTTIYGNNDRYRGVFGRRDVVFANPEDMARMGLSEGDLIDVGAAFDESGDRVARAFTVVARDIPPGCLAAYYPETNVVIALDDHDQRSGTPAYKSAPVRLRKHQADWLSMTSRS
>NC_014100.1|WP_013078642.1|1595917_1596733_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MSRSSVAPRSAVQWRADQAARPFERITPRETAVGLSFDGRPHTVLMATPEALEELALGFVVTEGVAKASDVTAITLKEEAQGVLVDVAFAPGALARKARPRNLEGRSSCGLCGVQRLADAVRPLPRVGEGARIRHEAIPVALAALEAQQALGLLTRATHAAAFFTPKGELVQVREDVGRHNALDKLAGALARDGVDAATGFVVVTSRCSFEMVEKAARMGCPILVAVSAPTDLAIAKAEEAGITLVALARADGHAVFAGGERLIETQPEPA
>NC_014100.1|WP_013078641.1|1594154_1595798_-|FAD-dependent-oxidoreductase
MTGTTFETRRAQMFPRLEPDEIDRLRRFGQFVRAQPGEALATAGVASPGLFVVLAGRVAISRRDANRESQPIVEHDAGQFIGEIAQLSGRPSLVDVTALTEVEALLIPPDRLRAVLVAEAELGERIMRALILRRVSLIETGAGGPIIIGRAGDAEVIRLAGFLARNGHPYQHLDPDQMDCAKVLIQRFEVDESELPIVLCPNGQILRQPTNHKLGRCIGLVGPIDEARVYDVAVVGAGPAGLATAVYAASEGLSVLVLDTRAFGGQAGASARIENYLGFPTGISGMALMGRAHGQAQKFGAELAIPDEVASLACEDDGLHRYRLALVSGESAQAKTVVIASGARYRRLDVDNLDQFEGSSVHYWASPLEAKLCAGHEVALVGAGNSAGQAAVYLASQVKKVWMIVRGESLAATMSRYLIDRIESTPNIEVLVRSEVVALEGEGGQLSAVRWRGPGDIETTRPVTHLFLFIGAAPNTSWLSQCQVELDNHGFVRTGADLAPGHPLLQTSRKGVFAIGDVRAGSVKRVAAAVGEGAQAVAAIHAYLANA
>NC_014100.1|WP_013078640.1|1593845_1594145_-|UBP-type-zinc-finger-domain-containing-protein
MTCTHGDAIRLVTPSAKGCEECLKTGGWWVHLRLCRTCGHVGCCDDSPSKHASAHFRATRHPIIEGYDPPEGWGWCYVDEEFVELPEQTPQLGPIPRFV
>NC_014100.1|WP_013078639.1|1590620_1593500_-|TonB-dependent-receptor
MLKIQYLGGASALVLLLNATPVIAHAQTDTAASATAVEEIVVTGSRIARRDYTSESPIVTVGKADIEKVGSVTVDTILNQMPQFVPSVSSTSNNPSNGGQANIDLRGLGTARTMILLDGHRVVPSNSDGTVDVNVIPAALIQNIEVISGGASATYGSDALAGVVNFKLNNNFTGLQLDAQYGVTEEGDGREKSLALTAGGKYAEDRGHAVFSLSYSERGAVYNASRDFSAVSGASSTTPYGRYDATGTNLPTQAAVDAVFAQYGVAAGTVKASANLGFNDDGTLFYNGQNYKGSTAIDYSTIPVNGTYNTGPLNLLQLPLKRYTAYAATDYQINEHAQFYGSFNFTHYDSTTILAPAPAAGSTGFSVPVTNPFIPDDLATLLASRANPDASFLLRKRFTDVGPRQSDTTFNVFQIAGGVRGDIGFKDWTYDVFASYGRSEQNETQSGNVSHSAVQTLLNASDGGASICEGGYDPFGLNALSSACRSYITRQTKNRTVAEQQVVEANLQGGLFNLPAGEVRAAIGASYKRDTYLFEPDSLLSTGDVVGFNAQDAIDAATNVKELYGELLVPVLKDLPFIKALDLTAGYRLSDYNTVGKVDAYKLNGDWEVVEGFRLRGGYQRAVRAPSIGELYSPQNQGYPSISEDPCAYNSTYRAGSNASTVRTLCLAQGVPSAIIDSYTYTNSQVNALSGGNPDLREETADTYSVGAVWTPRIAHPLLERLSLSVDYYSIDIKNAIGTIDAATALDKCYSAEGNPTGSTSNYYCGLFKRNSATGEIDTLTLTNLNLAEYKTSGVDFQVDWGFGLGAVSLDDRYGAIKVNVIGTYLDSFKVQSLPGEGFTELKGTIGNTQISSTAVSHPEWKYNTSISYLIGPVEVGARWRYIGDMVDAADASEKIGAVNYYDLNASWKVNDTYAIRGGVTNLTNKQPPYFSSYVQANTDPSTYDVLGRRFFVAVKAKF
>NC_014100.1|WP_157038976.1|1589116_1589575_-|hypothetical-protein
MSISRSRGTLRVASLRWTAALPPLLAAALVVFSGLMDLRGGSTPRLFWIWFPLASLCLAYLLIVLGAVAINGGIAIYLRGESATFLFPYPKRLKLSKFQKIELIETAKPFPRQALLFLGPNGTCDTTIVSAMVEGSDVIRERLLVHVTGAGQ
>NC_014100.1|WP_013078638.1|1587784_1588975_+|elongation-factor-Tu
MAKEKFERTKPHCNIGTIGHVDHGKTTLTAAITITLAKSGGATAKNYADIDAAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPALVVFMNKVDMVDDEELLELVEMEVRELLSSYQFPGDDIPITKGSALAAVEGRDAKIGEDAILALMASVDEYIPQPERPVDLPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIRPVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIKLREGVEMIMPGDNAELDVELITPIAMEEKLRFAIREGGRTVGAGVVAKIVE
>NC_014100.1|WP_013078637.1|1586490_1587321_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSSHSERNDRKRPSAQGRDFRSKPRKPNDFSKGQGDAKDWIWGTHAVEAALSNPHRPAPKRLLATPDRAKRLAPALQKLSCLQVMEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELAASNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVPYARVVNLSRALEELADLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHCDVLGKIPMPGGFESLNVSAAAAIALYEASKPRGKATA
>NC_014100.1|WP_013078636.1|1586136_1586484_-|hypothetical-protein
MRKRLALLAALAVGTSGGGAQASTADTQARLAAARPVATQAVTPPPPPVAPHKASGSREPMAAPPKTNLAAPEAPPPRAAPPRELGLILLAPALIALVAVVRWFARRRRSGSKRV
>NC_014100.1|WP_013078635.1|1585337_1586078_-|TerC-family-protein
MFDTLMAHLDGFQGPLTAFLQVLMIDLVLAGDNAVAVGLAAGGLPPKERKKVILYGLGAAVVLRISFALITTWLLGVIGLLLAGGFLLLWVCWKMWRELREQASHDQADAVAMVDSDPNTEPRARPPKSFKAAFIQVLIADVSMSLDNVLAVAGAAREHPAILVFGLLLSIALMGLAASAIANLLHKHRWIGFVGLAIVLYVAVHMIWEGHRSVVMDLHQTGAYNAAVPAPLDISPEDVAQHNRHK
>NC_014100.1|WP_013078645.1|1600065_1600824_-|hypothetical-protein
MRTKLFATAALIAAAVSAPAFAQNVGSVGAAVNYTDINTKLGGGHGSSAVIDGSVAIPLQGAWTVTANGDVSISDNDLSDDTIASGAAHLTTKIGDSWRVGGFTALSRPANDTVWAVGGEAHKYLSNVTLSGVAAYGQSNDLDADLYTVRGDARYFVTDNFRLDAGAAWSRIDTNVNADLWDVNLGGEYKFTNSGWSTFAKYTHSESDDLADLNADAIKVGLRYTFGGSLKDRDRAGADLISAGDLFGFGVR
>NC_014100.1|WP_004616952.1|1601437_1601746_+|30S-ribosomal-protein-S10
MDRQNIRIRLKAFDHRVLDHSTREIVNTAKRTGATVRGPIPLPTLIEKFTVNRSPHVDKKSREQFEIRTHKRVLDIVDPTPQTVDALMKLDLSAGVDVEIKL
>NC_014100.1|WP_013078646.1|1601759_1602524_+|50S-ribosomal-protein-L3
MTLPTQRTGVLAKKLGMTRFFDEAGQHVPVTVLSLDGCQVTGVRTVEKDGYTALQLGAGAKKAKNTSKALRGHFAKAAVEPKRVVAEFRVEENALIEVGAELTADHFVAGQKVDIQGVTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFPGKKMAGHLGQETVTTLNVTVWKVDVERGLILVKGAVPGHEGSYVKVRDAVKKALPADAPRPGAFRKAGEAPAAAETPAEEAPAAATEEGEG
>NC_014100.1|WP_013078647.1|1602523_1603162_+|50S-ribosomal-protein-L4
MKLDVIKLDGGKAGSVDLDDAIFGIDDIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALKHALSSKAKSGSLVVLDSAVLTDPKTAALRANFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAGLNVYDVLRRQTLVLTKDAVEAISARFAEKEAA
>NC_014100.1|WP_010919129.1|1603161_1603458_+|50S-ribosomal-protein-L23
MAATARHYDTILSPVITEKTTLLSEQNKVVFKVANDATKDEIAAAVEELFKVKVTKVNTIVTKGKTKRFRGIVGRRNDVKKAIVTLAEGQSIDITTGL
>NC_014100.1|WP_013078648.1|1603462_1604302_+|50S-ribosomal-protein-L2
MALKQFNPTSPGQRGLVLIDRSELHKGKPEKKLVEGLTKSGGRGGNGRIAVRFRGGGAKRLYRLVDFKRRKQGVATVVRLEYDPNRTAFIALIKYQADGELAYILAPQRLKAGDEVVTGEKVDVKPGNASPLRTLPIGTIIHNIELKPAKGGQIARSAGAYAQLVGRDAGYAQIRLNSGELRMVLDTCMATVGAVSNPDHMNQNLGKAGRSRHMGRRPHVRGVAMNPVDHPHGGGEGRTSGGRHPVTPAGKPTKGAKTRVNKATDKFIIRSRHKAKKGR
>NC_014100.1|WP_010919131.1|1604305_1604584_+|30S-ribosomal-protein-S19
MTRSVWKGPFVDGYLLKKADAALSSGRKDVIKTWSRRSTIMPQFVGLTFGVHNGHKHVPVLVSEDMVGMKFGEFAPTRNFPGHAADKKAKRK
>NC_014100.1|WP_013078649.1|1604586_1604967_+|50S-ribosomal-protein-L22
MAKQKQARRLDGAEAMAKVRTLRTSARKLNLVAQSIRGLNVQRALNELEFSHKRIAQDVRKALYSAISNAENNHNLDIDSLVVAEAYVGKNLIMKRFSPRARGRATRVEKPFSEITIVVRELGEAA
>NC_014100.1|WP_013078650.1|1604966_1605719_+|30S-ribosomal-protein-S3
MGQKVNPVGLRLGVNRTWDSRWFADGAQYGKMLHQDLAVRAALKKRLYQAGVSRIIIERPHKKCRITIYAARPGVIIGKKGADIDKLRKDLSVQTEGEVHLNIVEIRKPETDAQLVAESIAQQLERRIAFRRAMKRSIQSAVRLGAKGIRINVSGRLGGAEIARMEWYREGRVPLHTLRADIDFGFAEAKTTYGIIGVKTWIFKGEVLEHDPMALDKRLATESGPAGEGGGRERGDRPDRGDRRDRRDRA
>NC_014100.1|WP_013078651.1|1605732_1606164_+|50S-ribosomal-protein-L16
MLSPKKTKFRKQFKGRIHGASKGGTLLNFGSYGLKAVEPERITARQIEAARRAITRQMKRQGRVWIRIFPDVPVTGKPAEVRMGKGKGAVDYWAARVAPGRIMFEIDGVPDDIAREALRLGAAKLPIRTRVVTRIDAGVAQEA

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Crispr_ID: NC_014100_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014100_2

2837974-2838065

Orphan

Consensus_repeat	Method
CACTTGGCGAACTTGCCCTTGGCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014100_2

>merge|NC_014100|2|2837974-2838065|CRISPRCasFinder
CACTTGGCGAACTTGCCCTTGGCGTCCTTGCACTTGGTCGGCTTGGTGGGCGCGGCGGCGGCCGGACACTTGACGAACTTGCCCTTGGCGTC

>NC_014100|2|2|2837974-2838065|CRISPRCasFinder
CACTTGGCGAACTTGCCCTTGGCGTC	CTTGCACTTGGTCGGCTTGGTGGGCGCGGCGGCGGCCGGA
CACTTGACGAACTTGCCCTTGGCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014100.1\|WP_013079695.1\|2834665_2835946_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223222
NC_014100.1\|WP_013079702.1\|2841715_2842600_+\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
NC_014100.1\|WP_013079694.1\|2833072_2834635_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_014100.1\|WP_013079691.1\|2829116_2830031_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224332
NC_014100.1\|WP_013079700.1\|2839329_2840037_-\|RlmE-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223370
NC_014100.1\|WP_013079705.1\|2845193_2846534_-\|N-succinylarginine-dihydrolase	unknown	unknown	gnl\|CDD\|237332
NC_014100.1\|WP_013079707.1\|2847975_2848980_-\|arginine-succinyltransferase	unknown	unknown	gnl\|CDD\|225680
NC_014100.1\|WP_013079704.1\|2844699_2845197_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_014100.1\|WP_013079703.1\|2842554_2843769_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|235167
NC_014100.1\|WP_013079692.1\|2830097_2831414_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223465
NC_014100.1\|WP_013079688.1\|2824351_2827156_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319848
NC_014100.1\|WP_041538300.1\|2840033_2841140_-\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NC_014100.1\|WP_013079706.1\|2846530_2847979_-\|succinylglutamate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|274486
NC_014100.1\|WP_013079701.1\|2841304_2841634_+\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|226308
NC_014100.1\|WP_013079697.1\|2836344_2837808_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NC_014100.1\|WP_013079699.1\|2838286_2839333_-\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|367001
NC_014100.1\|WP_013079689.1\|2827152_2828178_+\|ArsJ-associated-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|169599
NC_014100.1\|WP_013079693.1\|2831499_2832756_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NC_014100.1\|WP_013079690.1\|2828191_2829031_-\|EcsC-family-protein	unknown	unknown	gnl\|CDD\|378945
NC_014100.1\|WP_013079696.1\|2835945_2836341_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226211

Protein	Function_ID	Function_description	E-value
NC_014100.1\|WP_013079695.1\|2834665_2835946_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	3.99013e-90
NC_014100.1\|WP_013079702.1\|2841715_2842600_+\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	2.42188e-159
NC_014100.1\|WP_013079694.1\|2833072_2834635_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_014100.1\|WP_013079691.1\|2829116_2830031_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.93316e-05
NC_014100.1\|WP_013079700.1\|2839329_2840037_-\|RlmE-family-RNA-methyltransferase	gnl\|CDD\|223370	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis].	6.29954e-95
NC_014100.1\|WP_013079705.1\|2845193_2846534_-\|N-succinylarginine-dihydrolase	gnl\|CDD\|237332	PRK13281, PRK13281, N-succinylarginine dihydrolase.	0
NC_014100.1\|WP_013079707.1\|2847975_2848980_-\|arginine-succinyltransferase	gnl\|CDD\|225680	COG3138, AstA, Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism].	7.30775e-176
NC_014100.1\|WP_013079704.1\|2844699_2845197_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.84789e-12
NC_014100.1\|WP_013079703.1\|2842554_2843769_-\|acyltransferase-family-protein	gnl\|CDD\|235167	PRK03854, opgC, glucans biosynthesis protein MdoC.	1.16259e-12
NC_014100.1\|WP_013079692.1\|2830097_2831414_-\|hypothetical-protein	gnl\|CDD\|223465	COG0388, COG0388, Predicted amidohydrolase [General function prediction only].	0.000313168
NC_014100.1\|WP_013079688.1\|2824351_2827156_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319848	cd07550, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily. Uncharacterized subfamily of the heavy metal-transporting ATPases (Type IB ATPases) which transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_014100.1\|WP_041538300.1\|2840033_2841140_-\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	1.03398e-115
NC_014100.1\|WP_013079706.1\|2846530_2847979_-\|succinylglutamate-semialdehyde-dehydrogenase	gnl\|CDD\|274486	TIGR03240, arg_catab_astD, succinylglutamate-semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism. [Energy metabolism, Amino acids and amines].	0
NC_014100.1\|WP_013079701.1\|2841304_2841634_+\|heat-shock-protein-HspQ	gnl\|CDD\|226308	COG3785, COG3785, Uncharacterized conserved protein [Function unknown].	5.42668e-60
NC_014100.1\|WP_013079697.1\|2836344_2837808_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NC_014100.1\|WP_013079699.1\|2838286_2839333_-\|potassium-channel-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	4.02324e-31
NC_014100.1\|WP_013079689.1\|2827152_2828178_+\|ArsJ-associated-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|169599	PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated.	0
NC_014100.1\|WP_013079693.1\|2831499_2832756_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.81282e-53
NC_014100.1\|WP_013079690.1\|2828191_2829031_-\|EcsC-family-protein	gnl\|CDD\|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	6.08499e-17
NC_014100.1\|WP_013079696.1\|2835945_2836341_-\|membrane-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	4.81753e-27

>NC_014100.1|WP_013079697.1|2836344_2837808_-|IMP-dehydrogenase
MEIREGLTFDDVLLEPGPSDVMPTQVTTETRFTREISLNIPLVSAAMDTVTESRLAIAMAQAGGLGILHRNLTNEEQADQVREVKRYESGMVINPLTIHPDTTLAEIREIKARRKISGFPVVERGSGKLVGILTNRDMRFEGDDKVPASALMTRENLITVGEGIDHREARELLRKHKIERLIVVDDAYRAVGLITVKDIEKAQAHPLAAKDDKGRLLVGAASTVGDAGFERSMGLVDAGVDVVVIDTAHGHSSQVAQAVSRLKREANRVQIVAGNIATYDAARALIDAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIMEAVRAGREAGVPIIADGGIKYSGDLAKAIAAGASTAMMGSMFAGTEEAPGEVFLYQGRSYKSYRGMGSVGAMARGSADRYFQKEVTDSFKLVPEGIEGQTPFKGPISPVLHQLVGGLRAAMGYVGAPTIPELQKRAKFVRITGAGLRESHVHDVMITREAPNYPSAV
>NC_014100.1|WP_013079696.1|2835945_2836341_-|membrane-protein
MRMAFELQMLGVAVLIGLVHLLAAALAGVSQRGLKWSAGPRDEPFPVSGVAARLERAFANYRESFPFFAAAVLVAYLGGRFGTLTLVGSGLYVGGRIAFLPLYALGAPWVRSIAWAVSFTGIFLTLLALVV
>NC_014100.1|WP_013079695.1|2834665_2835946_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase
MRDGGRVSAAIEVLTEIETRHFPVKMALKRWGEAARYAGSKDRAFVSGLVLDALRRKRSLGWMMGDASPRGVVLGVLAFTWAWTPERIAEATAEEHGFGALTDAERERLASPIALGNAPAPVVGDYPDWLEERLIRTLGADQTVEMRALSERAPVDLRVNTLKTDAERAAKALAPIHAAPAGILPNAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVAGEVKGKQVLDFCAGGGGKTLALAAAMGNSGQIFAHDADARRLADTIRRGQRAGVRNLQIRSPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLEDAATFVKAGGRMVYVTCSLLTDENEDRVAGFLERHPEFTVKPIALAGVEQHVTPEGYLRLTPYRAGTDGFFAAVLERSTYTP
>NC_014100.1|WP_013079694.1|2833072_2834635_-|glutamine-hydrolyzing-GMP-synthase
MTPEPNHQRVLIVDFGSQVTQLIARRVREAGVYCEIHPFDKAEAVVDEYKPSAIILSGGPASVLEADSPRIGRKLFDLGLPLLAICYGQQLLCDVLGGKVEGGHAGEFGRAELTVGKDSPMFQGLAGVGGVETVWMSHGDRVTAIPDGFEVIATSTGAPFAAIANDAKKIYALQFHPEVYHTVNGAKMYRNFLFNIAGLKGDWTMAAFRQEMVQKIRDQVGTGKVICGLSGGVDSSVAAVLIHEAIGDQLTCVFVDTGLLRKNEAEQVVTLFRDHYNIPLVHVDAGDLFLGELAGVSDPETKRKTIGRLFIDVFDKEAAKIDGAQFLAQGTLYPDVVESVSARGGPSAVIKSHHNVGGLPDYMKLKLVEPLRELFKDEVRALGVELGLAPAFVGRHPFPGPGLAIRIPGEITPEKVKVLQEADAIYLEEIRNAGLYDQIWQAFAVLLPVKTVGVMGDARTYENVLALRAVTSTDGMTADFFEFPWPVLGKTATRIINEVRGVNRVVYDVTSKPPGTIEWE
>NC_014100.1|WP_013079693.1|2831499_2832756_-|tyrosine-type-recombinase/integrase
MLTDSKLKSLKPQAKMYKVADRDGIFVAVAPSGTVSFRLDYRINGRRETLTLGRYGVGGITLVRARELAMEARKAVRDGQSPMIERRRAKAAQRDCGTFGEWAERWFEKATMAQSTRDMRRSIYLRDVAKVFQNRRLHEIEAMDIRLACEAIVARGAPATAIHVRELVKQVYAFARLHGAKVDNPATDVSPSSIAKFQPRERSLTPKEIRIFYSLLEMVPTLPTIRLGMKLILLTLVRKSELVFATWDEVDFVNAIWCIPAARMKCGRPHNVYLSRQALDILIALRTCAGNSPYILPSRYEADQPMSRATFNRVTTAIAERAEENQQALAPFTVHDLRRTGSTLLNEVGFEADWIEKCLAHVDRRTSRRVYNVAEYAHARTHMLQEWADMVDAWAAGRKHTPTLQPSVSHGVILDPGA
>NC_014100.1|WP_013079692.1|2830097_2831414_-|hypothetical-protein
MTEEEWRSSAWRTVDDLAKEGLSGPGGHARALVTVAMLLKSCPLTISRRYGYADAGFFELQVLAANARLMDDDHAIPRADEAVETLFVALSVQLNALDALHHELEGDLAPAEPNEDWRVAYPDGEAFLIPRGGLHRTSARREDAPWQITLRWRDLMPHHRLLPVELNGVAIELHWRDMASAWPASAPFGAGFFTGVAFEDDLPGKDFVVTGVTCANHNGQVRDRLEAAHDAQCVALILPELTMPPEQVDVLQEHLRQRIRWASAQPISAPALIVAGSWHVPVDEAGRMGNVAPVFDAYGEPILHHTKLLAYNAGGAPERIVAGDRLHVLVTEDRLIGFGVCLDFCERLEGAYFPEFDIDYALVTSCGEDKTMLGHIATARDMITRFRSRAFVVQHRYPPFTPPGATQPIGYVLPPRDDPSADPNNTRVHDVFSVHPSD
>NC_014100.1|WP_013079691.1|2829116_2830031_-|winged-helix-DNA-binding-protein
MTREAARAFDYIASGDASPAEALAVIREAGDMAGKAYGQRVYIALKAVTVRRLTSRRADDASAWIDVIRQSSALLKARGETLVGERLLVLSDMAADWARTCKVHDIKSLLERPHVLSILQALHEAGGRAKRADLARQLGIGDANFSRILGALEAVGLILRDRRKERTIGLTEEGARLAAERFGLLSQIKPVGAALVGRSVESVLKDVKRLVKDHGHQIATYEPTTHSIHFYGGDTSVFDGYSLRCEVHKSLDYVQADKRPVYFAGGVVASRNLVIARDPVSGVLGGKPTVTEKASGKGRSRGRD
>NC_014100.1|WP_013079690.1|2828191_2829031_-|EcsC-family-protein
MSDVDWSPDDEAALALAVGLLEKETLTDTLLSIAGAAAGAGLKGLNALVPAKIGENLADVLAQVLEYTFDKVLLTVDRDGAGLTASSWFARLSVALSGGGGGLAGLPGTLVELPVTTALLMRGIAQVAAREGEDLSLPEAKLECLKVLAFGGPGLRDDEENEGYFATRIALATGLPRLAEQSLASIVPALAARVSGRFAPLVSAKIGTQGVAVVGAVAGLIVNSAFADHFERKGRGHFIVRRLERQYGEAAVRARYDAVKASARPAERGAVGKSGAASA
>NC_014100.1|WP_013079689.1|2827152_2828178_+|ArsJ-associated-glyceraldehyde-3-phosphate-dehydrogenase
MKTRVGINGFGRMGRLALRQGFDHPDLEFTHINEPKGGAAVSAHLLKFDSVHGRWPHAVEARDDAIVINGMPVRFSTSATVEGIGWQDVDVVLECSGKFRTQALLEPHFAGGVRKVIVSAPVKDDVLNIVMGINDHRYDPANDHIVTAASCTTNCLAPIVKVIHENLGIRHGVVTTIHDMTNTQAVTDTPLSDLRRARAASLSLIPTTTGSATAISLIYPELKGRLNGLAVRVPLLNASLTDAVFEVEKPTSVAEVNALFKAAADGPLHGVLGYEDLPLVSVDFKGDPRSAIIDADSTMVVAGTQVKVLGWYDNETGYVARMIDLTRKIGAALALDQMAAE
>NC_014100.1|WP_013079688.1|2824351_2827156_+|heavy-metal-translocating-P-type-ATPase
MQVTYPRDGALRIADLGFLAMPESQDAKRFLATLFKIPEVTRVEIAPERQIAEIHFDRPLAPREMARRMGAQTVVAAADEETRLPVLATDPSGLVRLHRYGEVISSWSIVSEMPGRVRFRNAHLYRKKQLCQDIERELMTVFGVDRFKVNPQTCSALIHFDPAALDRWQLLECLEMALRHAQEDPSPAKNNHELLVCTAAAGLAAVAQFAAPALLVPAAALFVYCAVPTMIGAWDTLFKERRIGVDVLDAIVVIACLFTLEIFAGAVLAWCLSFGRMLLERAQEDSRRRLINVFGKQPRTAYLYRDGVEILVPLDQVRPGDIIAAHTGEVIAADGVVFEGDALVDQHVLTGEAVPVEKQAGDKVYASTLVIGGRLLITVESAGRETATAKISAILNDTAAFRLTSQSKGEALADKAVLPTLGLASLGLAAVGVPGATAIVNCDFGTGIRMAAPLALLSSLSVCAGRGMLIKDGRALEQMDEVDTVLFDKTGTLTHERPQLHRVHCFTDLDQDAVLTYAAAAEQRLEHPIAAAIVESFRALGRPFLKTDQSSFKIGYGISVHIDGDPVLVGSSRFMALEDAKAPPSVATIEQEAHGEGHSIVFVAVAGQVVGAIELAPKLREGVREVIAGLRERGVRQIVIISGDHDKPTRKLAETLGVDRYFAEVLPQDKARYVELLQAEGRKVCFVGDGINDSIALKRANVSVSLRGASTVATDTAQLVFMESDLWKLCEFRDIARELDKNVNLSWQIILVPNLLCIGGAFFLGFGVMASVLANNVAAIAALANGLRPRGMYASETGSAKAAAGSILTAAKGLLRGPGASDQASAPASEDDPDSLMSHVALRRGRGFFIWAGLAGLALPGIPGWPLLIVAVALGAGGKFGGARLDRWVRSRFPQVRAEALRFAHMLMDDLDRRFPDPPALAGLSPTLRIEARA
>NC_014100.1|WP_013079699.1|2838286_2839333_-|potassium-channel-protein
MSDQGGVIGGLVARPFRNLAISIAFVLFVAACAIVAYMADGWSFGDALYMVTLTIFTVGYGEVRPIDSHYLHGVTMATMVFGCTGVIIVTGSLVQALTQSQLEQFFGKRVERDIDRLDGHTIICGFGRIGLMLAGELASVGETFVIAERDEARCQEARALGYLCRHADATDEDVLRMLHVERAKVLATVLPDDAANVFITLSARSLNPKLEIIARGERPTTERKLVQAGADRVVMPAHIGAERIAEMILYPRLVNFLRGEEPKGDGTDEGLAKLGLDLRVITAPPNLGARKATVGELERRSGGVLVVRIERADGAVIESPSSDEIIRTGDALAVVSKSGRSSLGSLAD
>NC_014100.1|WP_013079700.1|2839329_2840037_-|RlmE-family-RNA-methyltransferase
MSEDPPRRRMVKPPTGGSEGGRGKPARLKTAYGRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDEKFHFFRKGARVIDLGCAPGGWLQIAVERGVTDLAGIDLLPVDPVAPAHILEMDFTADGAPEKLMEILGGEPDLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAVDVLKPGGAFVAKAFQGGETAEVIGKLKRHFTKVQHFKPKASRQDSSEVFLVATGFKGR
>NC_014100.1|WP_041538300.1|2840033_2841140_-|Ppx/GppA-family-phosphatase
MSEAPRAPGAPSGRRRRSPEESSCYAALDLGTNNCRLLVATPSPRGFRVVEAYSRIVRLGEGLSQSGMLSEAAMDRSLAALKVCAEKIRRRKAVRVKAVATQACRGATNGPDFVRRVHEETGLKLQIISPREEAQLSVAGCMSLFDREQDAALVVDVGGGSTELSWVDLKGGGLDARPRQFAAWKLPIKAWLSIPVGVVTLAERFPEGEVATEAWFRAMVDDVKARIEGFPHAEPMRPIFAEGRAHLVGTSGAITSLAGLHLGLPRYDRNVVDGLWMRRDDCDVAAARLLSLTSAERAQEPCIGADRADLVLAGAAILQAVQELWPCSRVRVADRGLREGLLMSLMSDQQKRPRRRRRGGASKKPVSA
>NC_014100.1|WP_013079701.1|2841304_2841634_+|heat-shock-protein-HspQ
MNSRLAKFAIGQVVRHRIFPFRGVVFDVDPVFANTEEWWESIPEEIRPTKDQPFYHLLAENEDNSYVAYVSEQNLLPDDSGEPVGHPQTAVIFESFDHGQYKLRPRISH
>NC_014100.1|WP_013079702.1|2841715_2842600_+|phenylalanine-4-monooxygenase
MSGEGISSAPPPGANQDWTIDQGWEAYSQADHDVWITLYERQTQMLNGRACDEFLRGLDALDLHRAGIPDFKRINEELQRLTGWSVVAVPGLVPDDVFFDHLANRRFPAGQFIRTPHELDYLQEPDIFHDVFGHVPMLTDPTFADYMQAYGEGGRRALGLGRLANLARLYWYTVEFGLMNTPEGLRIYGAGIVSSRAESIFALDDPSPNRIGFELERVMRTLYRIDDFQQVYFVIDSIQTLQEVTLRDFGALYERLSGASDIGVAEIVPGDAMITRGTQAYARAGGRLARAPAG
>NC_014100.1|WP_013079703.1|2842554_2843769_-|acyltransferase-family-protein
MTTTAPSIDRRYDLDWIRVGAFFLLILYHTGMFYVPWEWHVKTPHVVEGLMPFMLLTNPWRLTLLFLVSGAATRFMADKTSVGKLTGARIARLLPPLLFAMFVIVPPQSYYQVVEHMASHPGSGLSVDNFWVRYVTSSGHWCGSDGECLTTPTWNHMWFVAYLLFYTLVLALILLVWRAAGERIQSGAERVLKGVGLFVWPILLLGLLRAMLYAKYGETHALVGDHYVHAVSFSAFLLGFGLAKSEVLRDRLIAVRWPALVLAVAAWAVWSVYVWTYRHDTPVPSPQLKLAMRFVFATDTWCAIVAILGFGAKHLTRGGPALRYLTLGVFPFYLVHQTLIVVMAYHLAKLGLPQALEGTILVAATFAGCFATYEIVRRIPGVRILFGLKGQPAGARASRPPALA
>NC_014100.1|WP_013079704.1|2844699_2845197_-|GNAT-family-N-acetyltransferase
MSVTIRAATLADREAIVALHKAAAVTPGALARAPEEVTPAYVEGAIGSDVCLVAVEADGFVCGEIHAKRETVALFAHVLGSLTVAVHPERQGRGIGSKLFEALIAWAKAAQPPILRLELAAGAGNPGAIRLYERLGFKHEGRQVARGRLPDGRFEDDILMGMLLL
>NC_014100.1|WP_013079705.1|2845193_2846534_-|N-succinylarginine-dihydrolase
MISACEANCDGLVGPTHSYVGLSPGNLASTRNAGEVSNPRGAALEGLAKMRRLYDLGLPQFVLPPHERPAVGFLKSIGFSGADEVVLEDAWKVAPALAAAACSASSMWAANAATVTPSADAADGRVHLSPANLLTNLHRSLEGEQTTRALRRLFPDEQRFAVHDPLPAQPHFADEGAANHVRLCAKQGAPGVNLFVWGREAWEHWNGAFPARQTREAFEAIQRRHGAARSIFPRQAKAAIAGGAFHNDVVCVGTRECLFFHERAFEDRGLMEREVRAAAEGLFEPTFVEVSEADLPMADLVASYLFNSQLLVVPGEDRLLLLAPVETRDNPRAHAVAEGLAASNGPIGRVEYVDVRQSMRNGGGPACLRLRVVLTEDELAAANPAQRFMPGLHTTLAAWVERRYRDRLAPNDLADPLLLTESREALDELTQILDLGGDFYPFQRVS
>NC_014100.1|WP_013079706.1|2846530_2847979_-|succinylglutamate-semialdehyde-dehydrogenase
MSGFIDGKWRSGQGPELISTDPATGDAVWRGATATEADVGQAVQAARRAFSDWADRPREERIAVLRRYKEVLVERAAAFAEALSRETGKALWETKAELGSMAGKVDLSIKAYDERTGVTENAMPFGRAVLRHRAHGVMAVLGPFNFPGHLPNGHIVPALLAGDTVVFKPSEETPLAGRLMVEALEAAGVPAGVVNLVQGGRETGQALINQEIDGLLFTGSAAAGAFFRRHFADRPDVILALELGGNNPLVVWDADDAEAVAALVVQSAYITTGQRCSCARRLIVPDGAFGKAVIEATAAMADRLTIGPWSSENEPFMGPLISSRAAESARAAAQRMGGDHIRVLGPAEGLSGAFVTPGLVDVTGLETPDEELFAPWLQVRRVSNFDDALKAANATRYGLSAGLISNESKHWDKFLNRIRAGVVNWNRPTTGAAGSMPFGGLGASGNHRPSAYYAADYCAYPVASFEAEGVANTIKDIKGLRP
>NC_014100.1|WP_013079707.1|2847975_2848980_-|arginine-succinyltransferase
MLVVRPAGLADFDSLMELAVLSGRGFTSLPEDEPTLRARLALSEASFQSGVAPPEAWYTLMLEDLDTGSVEGVAGVKAGVGVKRPFFSFRVVTLAQSSPTLEMRFDHKALVLVNECAGWSEVGSLFLRPEKRKGGAGRLLAQSRYMLIGIEPQRFAEMVLAELRGWFDEDGRCPFWEHVAHKFFRLGFDQADLMSASTDGQFILDLAPRHPIYTELLPEEARDVIGRVHRDGEAARAMLEREGFRYQGLVDLFDAGPTVACPRDDIRTVRDSKRLRVKLGEDAFGEEALISTGDVARFRAIRAPVLIDGDAAILGREALDALGVCEGEVVRVKA

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Crispr_ID: NC_014100_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014100_3

4045684-4045787

Orphan

Consensus_repeat	Method
GGCGACATGGACTTCTAAGAGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014100_3

>merge|NC_014100|3|4045684-4045787|CRISPRCasFinder
GGCGACATGGACTTCTAAGAGAAGTCCATAAAGTCGCCCATTCTCCAAAGAGATCTGGATCGGCCGAGCCGATCCAGAGCGGCGACATGGACTTCTAAGAAAGC

>NC_014100|3|3|4045684-4045787|CRISPRCasFinder
GGCGACATGGACTTCTAAGAGAAG	TCCATAAAGTCGCCCATTCTCCAAAGAGATCTGGATCGGCCGAGCCGATCCAGAGC
GGCGACATGGACTTCTAAGAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014100.1\|WP_041538372.1\|4047434_4048595_+\|DUF3089-domain-containing-protein	unknown	unknown	gnl\|CDD\|378625
NC_014100.1\|WP_013080757.1\|4042165_4042705_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_014100.1\|WP_013080767.1\|4049006_4050935_+\|cobaltochelatase-subunit-CobT	unknown	unknown	gnl\|CDD\|130712
NC_014100.1\|WP_041538370.1\|4037384_4038668_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240289
NC_014100.1\|WP_013080772.1\|4054627_4055668_-\|bifunctional-nicotinamide-nucleotide-adenylyltransferase/Nudix-hydroxylase	unknown	unknown	gnl\|CDD\|235436
NC_014100.1\|WP_013080758.1\|4042674_4043100_-\|DUF4345-family-protein	unknown	unknown	unknown
NC_014100.1\|WP_013080760.1\|4043708_4043999_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_014100.1\|WP_013080769.1\|4052233_4052545_+\|hypothetical-protein	unknown	unknown	unknown
NC_014100.1\|WP_041538371.1\|4038689_4039853_-\|hypothetical-protein	unknown	unknown	unknown
NC_014100.1\|WP_013080759.1\|4043122_4043533_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NC_014100.1\|WP_013080751.1\|4034492_4036409_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_014100.1\|WP_013080770.1\|4052782_4053076_+\|hypothetical-protein	unknown	unknown	unknown
NC_014100.1\|WP_013080763.1\|4046138_4046450_+\|hypothetical-protein	unknown	unknown	unknown
NC_014100.1\|WP_106907334.1\|4051075_4052002_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226697
NC_014100.1\|WP_013080771.1\|4053170_4054559_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236407
NC_014100.1\|WP_013080766.1\|4048716_4048899_-\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NC_014100.1\|WP_013080752.1\|4036515_4037283_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NC_014100.1\|WP_013080756.1\|4040676_4041981_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173844
NC_014100.1\|WP_106907333.1\|4046616_4047342_+\|intradiol-ring-cleavage-dioxygenase	unknown	unknown	gnl\|CDD\|239540
NC_014100.1\|WP_041538753.1\|4039926_4040520_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584

Protein	Function_ID	Function_description	E-value
NC_014100.1\|WP_041538372.1\|4047434_4048595_+\|DUF3089-domain-containing-protein	gnl\|CDD\|378625	pfam11288, DUF3089, Protein of unknown function (DUF3089). This family of proteins has no known function but appears to have an alpha/beta hydrolase domain and so is likely to be enzymatic.	2.3039e-66
NC_014100.1\|WP_013080757.1\|4042165_4042705_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.51161e-60
NC_014100.1\|WP_013080767.1\|4049006_4050935_+\|cobaltochelatase-subunit-CobT	gnl\|CDD\|130712	TIGR01651, CobT, cobaltochelatase, CobT subunit. This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	0
NC_014100.1\|WP_041538370.1\|4037384_4038668_-\|hypothetical-protein	gnl\|CDD\|240289	PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional.	0.000158431
NC_014100.1\|WP_013080772.1\|4054627_4055668_-\|bifunctional-nicotinamide-nucleotide-adenylyltransferase/Nudix-hydroxylase	gnl\|CDD\|235436	PRK05379, PRK05379, bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase.	0
NC_014100.1\|WP_106907334.1\|4051075_4052002_+\|hypothetical-protein	gnl\|CDD\|226697	COG4246, COG4246, Uncharacterized protein conserved in bacteria [Function unknown].	1.78426e-99
NC_014100.1\|WP_013080760.1\|4043708_4043999_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	7.54627e-56
NC_014100.1\|WP_013080759.1\|4043122_4043533_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.40684e-44
NC_014100.1\|WP_013080751.1\|4034492_4036409_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_014100.1\|WP_013080771.1\|4053170_4054559_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236407	PRK09198, PRK09198, putative nicotinate phosphoribosyltransferase; Provisional.	0
NC_014100.1\|WP_041538753.1\|4039926_4040520_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	6.35106e-21
NC_014100.1\|WP_013080752.1\|4036515_4037283_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.17704e-47
NC_014100.1\|WP_013080756.1\|4040676_4041981_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	0
NC_014100.1\|WP_106907333.1\|4046616_4047342_+\|intradiol-ring-cleavage-dioxygenase	gnl\|CDD\|239540	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.	1.96257e-64
NC_014100.1\|WP_013080766.1\|4048716_4048899_-\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.000391016

>NC_014100.1|WP_013080760.1|4043708_4043999_+|co-chaperone-GroES
MKFRPLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGEVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVVEA
>NC_014100.1|WP_013080759.1|4043122_4043533_-|VOC-family-protein
MIDHMGVTVRDLQASKAFYDAAFAPLGIGVVMSVSAEETGSSAFIGYGPNADRRDIQAGKPSFWVSEGQAVTGPMHVAFLAADRGQVNAFHAAALAAGGIDNGAPGVRPHYHPNYYAAFVLDPDGRNVEAVCHAPA
>NC_014100.1|WP_013080758.1|4042674_4043100_-|DUF4345-family-protein
MSSYVLSLFLAVVACVIGGALGGMILARPQTMIGLAGLADEETPKSPLFAEGRAFGGMLIASHGIAALYLGYQPRLGAAMAMVLAIGWLGAAAARALSAAMDGAAGRFNAGSIVFNALIGITLSLPFFNVGRYVARGMGFA
>NC_014100.1|WP_013080757.1|4042165_4042705_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MTHPVRLFLDRAPSPIGEILIVTDETGLLRAVDFHDFEPRLRRLLGLHYGALPLEDGAAPAETKAAFARYFAGDISALTDLPWDTGGTPFQRAVWRALAAIPPGETVTYSELARRVERPAAIRAVGAANGANPLSLVAPCHRVIGMSGALTGYAGGVERKRWLLAHEGVVQAKPMPLAT
>NC_014100.1|WP_013080756.1|4040676_4041981_+|acyl-CoA-dehydrogenase
MDFDISPKQRVFLDRVTAFMDEHVYPAIPAYEAEMNVLGAERWKVVQVLEELKKKAKAEGLWNFFMPPHSGQTHVDDTFQFEGEQLTNLEYSLIAEHMGKVGFASEVFNCSAPDTGNMEVLMRYGTLAQKERWLRPLMNGEIRSAFLMTEPAVASSDATNIETRIERDGDDYVINGRKWWSSGVGDPRCKVAIVMGKTDPTASPHSQQSQVLVPLDAPGIEIVRMLPVFGYDDAPHGHAEVILKDVRVPVEEGLLLGEGRGFEIAQGRLGPGRIHHCMRTIGAAEVALEKMIKRLMTRKAFGKYLSDHSVWEQRIAEARIDIEMCRLLCLKAADMMDKAGNKSARLEIAMIKVAAPRIALKVIDDAIQAHGGAGVTTDFGLAKLYAGIRTLRLADGPDEVHCRTIARMEMSKYGDLAYKQKAERDAALHVPGIR
>NC_014100.1|WP_041538753.1|4039926_4040520_-|GNAT-family-N-acetyltransferase
MLNLTADILQGRHVRLEPVTVDHRDELKAAVDCDPESWEIMSVNGCGEGFDDFWGALQGETDRGERIGFAIRRLSDGKVVGTSSYLNIRRVHCGLEIGSTFLNPEARSGPINPESKRLLLAHAFDCGAIRVELVTDVRNARSQAAIQKLGATKEGVLRNHKITWTGHVRDTAVFSITDYDWPGVRQRLDFRLSEAFV
>NC_014100.1|WP_041538371.1|4038689_4039853_-|hypothetical-protein
MGGMACLRICIERGARESAVEGVTPAKIDKTSSAYIEAHWPPPRRYGRVAPGAYVLVDPHADYLDGEELRNMAQELQLRLFGTQGRDDLCMLTFEGDEEQVLKFSTLGEDELLAMRGGKPPPPEGRTRLIRGDGVQELAPWGSTPRKVADKPKVEAPTPIHLGWRGVYNLGSQKFESSEIMVVRKSGAPEPQDDNEFAEHDLLAFDRAVAALEADPSLKAWVGVRMWSVVRAGIRDAYQARLTALSPSVRERMAAVIYEVPRDLPFSAIAPLRDLVLPNFARVDLRVHDAGFYCQAVPEGLAHGVVLQLEGDDEKSRLLKIHRFLSDRKVYATRRLRQGLAGVRNARELELARRMGANTVKGPFISGLFATPVTEQEAPIDELPLAV
>NC_014100.1|WP_041538370.1|4037384_4038668_-|hypothetical-protein
MPDSSTNWRGFLPNVAIMTAIACLRILFNPGGESQPGEVPKSKAQAVADAFLKARWRAPRKCGAVAPLAFVLADNRVEAFDPTEMQELAAELESVLFPGRQGGQVCLMTFEGDETAVLKFASLSQQELAGLVAGQGYGGAAGRVHVITADAVESVPSTPAEAKILAAEKAAAEGAPEIPPAEKPAKVAKAPAPPKAPPPPPPAQTGWWGVYDLSADAFAGSLIGMRADLLEPPPEDDDKLLKRDLVCLTDAQAALKTATFGEILVPFGFWNLTTPSAQDAYKSRLSRYPLDQQPRLVATIYGTPREASLGMLQQMRAFLKGSFAFMDLRVDDATFPIHGLPPELIDSVTLLLTGETEFDRMSTIQKFVERKHTYDGKGVRQGVAGVASRAELDACRAGGLVRVQGPAITTLLDKPIAAAEGAPIALS
>NC_014100.1|WP_013080752.1|4036515_4037283_-|MerR-family-transcriptional-regulator
MSVYTVKQMAKLSGVSVRALHHYDAIGLLRPRAVGANGYRYYDRQDLLRLQQILFHRTLETPLKDIQAVLDDPRFDLAAALRAQRERLAAEAERYARLVTVVDQTLATLEGDETMDDKMLFEGFDPKKQAQHEAWLVDRYGDEAAQRIADAKAGMKTWGKKDWSHFQEEAKAIEHDLAKALSQGLPVDSEPVTAIMRRHWAWVGRSWNREPTPDAFKGLGHLYQENPEFTARYEAIAPGLTEYLAEAMRVFADKR
>NC_014100.1|WP_013080751.1|4034492_4036409_+|DNA-mismatch-repair-endonuclease-MutL
MPIRRLPPETVNRIAAGEVVERPASAIKELVDNAIDAGATRIEVEAHGGGLTRILVADDGCGLSAEELPVAIERHATSKLAPDADGLWDLLRIHTMGFRGEALPSIGSVARLQISSRAKGEKDAFSILVEGGQVGDVAPAAFPGPHGARIEVRDLFYATPARLKFMKSERAEALAITEEIKRQAMANESVGFSLDIDGRRVLRLPPEHPGPQGRLARLAAVLGREFQENALEIDQVRDGVRLSGFAGLPTYNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHPTAALYVTLDTAEVDVNVHPAKAEVRFRDPALVRGLIVGALRHALAGAGHRASTTVAAQALDSIRAQQSPFPGYQPGPSAAGFSAWREGGWAPPTQRPLNMQSMDLPGLNEVSARVEPSYGGELAEVVREAYASVAFEDRPITDHPSAAAPFDPVDYPLGAARAQVHETYIVAQTRDGMVIVDQHAAHERLVYERMKGEMAAGGVARQTLLLPEVVDLDPAEAERVIARAEELANLGLVIESFGPGAVLVRETPALLGKTDAAGLIRDIADDLAENGAALALKERLEEVCSTMACHGSVRAGRRLNGAEMNALLREMEATPHSGQCNHGRPTYVELKLADIEKLFGRR
>NC_014100.1|WP_013080763.1|4046138_4046450_+|hypothetical-protein
MFRQRPDADLIVQGWVIGVMVEVPGERAPVRHYFAVGKADRAQAEWAATDLAQTEGAIASSPVNGQEPVEAMREIVAYRMRDLGLKSGEARRLGDKYPRRWLF
>NC_014100.1|WP_106907333.1|4046616_4047342_+|intradiol-ring-cleavage-dioxygenase
MTPQVTQGPYWFDPKLLRSDITEGRPGVPARVRMTVLDQAGAPIRGARVEIWHCDASGLYSGYEGQGDDLKTGTKGQTFLRGGQLTDQGGVATFRTIWPGWYEGRTPHIHAKVFLDARTALTCQLFVPDALSEYLYENVPAYKRPRKRDTLNSNDGIALQGGEAMVAAVREGKDAYEIALTVAIDPRADWKDKGFGPDRTGGSAGGPPPGPPPGGMGPPGGPPRANALTGEARLKAIIPGL
>NC_014100.1|WP_041538372.1|4047434_4048595_+|DUF3089-domain-containing-protein
MRLAAMGLAAMLTMGAAACAQTTPAPTTPNDYAKTDNWLCLPGRQDACASDQTTTIVEADGKTAVEPFKAAAAPAYDCFYVYPTVSTDSGGNSDMIIDPAERRVVDQQLARFGSKCRVFAPMYRQVTLAALRTAMLGGRSPGDGELAYADVRDAWRWYLANENKGRGVVLIGHSQGSRILLSLLKNEIDGQPAQKQMISALVLGMNTPVDAAGNYGSIPLCTKADQAGCLVTYVSFRATSPPPANSRFGKTDPEGRRAGCVNPAALLAGKASSDEAPLHAYLSSKGFGAVEGQAPKPFAKDLKVTTPFVSMPGLLSARCVSDGEFTYLAVKVNADPADPRADEIGGDISVAGVILKDWGLHLIDVNLAMGDLVALVDRQAAAYGAK
>NC_014100.1|WP_013080766.1|4048716_4048899_-|DUF1328-domain-containing-protein
MLKWAIILAIVAIVAGALGFTGVAGAAAGVAKILFFLFLIGFVILLLLGTTVFKAVSGPK
>NC_014100.1|WP_013080767.1|4049006_4050935_+|cobaltochelatase-subunit-CobT
MASKPESPTEPFKRALAHAARSLAETPDLEVVFSGDGPQLLGNRAVLPHPPRDLSGKEAARIRGLADQMALRLAHHDPVAHARARPASPDGQAAFESIEQARLEAIGANALGGVRANLTAALETRLEKQGLTRAVATDTQSAPMAEILGLLVRERLTGDAPPDGAKALVDILRADIEARAGKDLDRLAAAIGDQAAFARVSRDILRDLDLGEEMADATESADEDDGEEDDSPTEGDDNEQGEGEGEQPEGSSPQESEASDRESEAGDEEMVQSDQDGEVEETDEAPDMGDGAKPARPDPGQAQGGEPLYKIFTTEFDEIVQAEDLCDAEELTRLRTYLDQQLSALSSVVSRLANKLQRRLLAQQNRAWTFDLEEGMLDVARLTRVIIDPTAPLSFKQEEDQEFRDTVVTLLIDNSGSMRGRPIMVAAICADILARTLERCGVKTEVLGFTTRAWKGGSSRDAWIKAGKPAAPGRLNDLRHIVYKAADAPWRRARKNLGLMMREGLLKENIDGEALMWAHQRLVGRPEARRILMVISDGAPVDDSTLSVNSGHYLERHLRQVIAEIEGKSPVELIAIGIGHDVTRYYRRAVTIVDVEQLGGVLVEQLAALFEEEPRQIARARGLLAPLPVVTPQAAKPARTPA
>NC_014100.1|WP_106907334.1|4051075_4052002_+|hypothetical-protein
MDEADPTKVTAEGGFTYAGGLVLTSSDTTRLHGLSDLRIGAGDVLTAISDEGEVFEAKIQLDTAGRLAGLTGGKLFPLTGLDGRPLQGKRNADAEGLAVMPNGDRLVSFEGDHRIWLYPTQADGGWGTPRAVPKPATILPENEGMEALTAYPAAGPDAYLVGGEEGEVWLCRLSADCKSLPPQSGPDFTWGLTAFAPFQGTAVATLHRGYDPIRGWRAIVRFISDPTLPLARQRTAASLRIDGAMPRDNFEGLALSGSPSGAIRIYVLSDDGAVSAKQRTLLLAFDWKPPPPPPPAPAAPPRKPVRKR
>NC_014100.1|WP_013080769.1|4052233_4052545_+|hypothetical-protein
MIRLLVIAVSALMATTAATSASAGEITIKVRGRPTAEVHAEIIQAAKQLCQEDLAGNPAASDLAPYCVREITRDAVARTNSPELAAFNKAQARSVYAMRVALR
>NC_014100.1|WP_013080770.1|4052782_4053076_+|hypothetical-protein
MIRSIVLAASAIALAIAAPASAAEMRVKVAGKSAAEVRAEIVKAASTVCWQDIRGEALAGYMYPACIRASVNEAVAKINNPALSAYNASNPASTVSR
>NC_014100.1|WP_013080771.1|4053170_4054559_-|nicotinate-phosphoribosyltransferase
MFDNLILDTDSYKASHWLQYPPNTTAAFSYVESRGGRYDRTVFFGLQAILKSRLGRPVTHEMVDEAAALLAVHGEPFNEAGWRRIVDVHGGRLPVRIRAVPEGAVVPTHQALMTIENTDPECFWLPSYLETLLLRVWYPITVATISWHVKQTLRAALEKTSDNAATELPFKLHDFGARGVSSQESAALGGLAHLVNFQGSDTLSAVLAGRAWYGEPMAAFSIPAAEHSTITSWGRPNEVEAYRNMLTRFGKPGALFSVVSDSYDLFHAVRDLWGGALRQAVIDSGATLVVRPDSGDPVTVVAKTLEILDETFGSTVNGKGYKVLNHVRVIQGDGVNPVSIAAILDRIVADGFSAENLAFGMGGGLLQQLDRDTQRFALKCSAAKVDGRWIDVSKDPATDPGKKSKAGRLTLLVDEAGTYRTVALAEGQAPEPGWRDAMVTVWEDGALLVDQILAEVRARSEA
>NC_014100.1|WP_013080772.1|4054627_4055668_-|bifunctional-nicotinamide-nucleotide-adenylyltransferase/Nudix-hydroxylase
MRYDYLVLIGRFQPFHNGHLSVLRHALRLAGKVIVLIGSAGQPRTTRNPFNVGERAVMIRAAAEDQAERLLIRPLRDRLYNETVWVADVQRLVAEVLEADGAAPDATVGLIGRDKDGATGAYLAAFPQWPLVDVQHTDVLSATELRAWLFSGEAGALRLVEANTPPGVFGMLEAFRAGSPAYAQLAREDAFMRAYRQSWAAAPYPPTFVTADAVVVHSGHVLLVRRRAEPGKGLWALPGGFVEQGETVRDAAIRELQEETRLKVPPAVLRGSIKGQQVFDYPGRSLRGRTITHAFYFDFPTGDLPKIRAADDADRVRWIPLGEALLMEEQFFEDHFHILEHFVGGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	575310-575335	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	304775-304800	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	305211-305236	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP015006	Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence	32513-32538	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	311213-311238	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NC_007353	Sphingomonas sp. A1 plasmid pA1 DNA, complete sequence	1142-1167	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	JX469826	Uncultured bacterium plasmid pB12, complete sequence	16832-16857	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	JX469829	Uncultured bacterium plasmid pB1, complete sequence	16676-16701	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	AJ639924	Uncultured bacterium plasmid pB3 complete genome	17890-17915	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	17694-17719	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NC_019369	Burkholderia cepacia plasmid pYS1, complete sequence	16381-16406	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_MN366358	Bacterium plasmid pALTS29, complete sequence	16399-16424	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	9801-9826	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP040642	Agrobacterium sp. T29 plasmid unnamed2, complete sequence	323352-323377	4	0.846
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP013052	Sinorhizobium americanum CCGM7 plasmid A, complete sequence	143680-143705	5	0.808
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	29144-29169	5	0.808
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	191340-191365	5	0.808
NC_014100_1	1.2\|1599843\|26\|NC_014100\|CRISPRCasFinder	1599843-1599868	26	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	119816-119841	6	0.769
NC_014100_1	1.1\|1599783\|29\|NC_014100\|CRISPRCasFinder	1599783-1599811	29	MG945860	UNVERIFIED: Microviridae sp. isolate 17756-1502, complete genome	4218-4246	8	0.724

1. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cgcgttcattggcgcggccgacgcgg	Protospacer
 .****** ***** ***********

2. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cgcgttcattggcgcggccgacgcgg	Protospacer
 .****** ***** ***********

3. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cgcgttcattggcgcggccgacgcgg	Protospacer
 .****** ***** ***********

4. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP015006 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cgcgttcgatggcgaggccgacgccg	Protospacer
 .*****.**************** *

5. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cgcgttcattggcgcggccgacgcgg	Protospacer
 .****** ***** ***********

6. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NC_007353 (Sphingomonas sp. A1 plasmid pA1 DNA, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgc	Protospacer
* ************* **** ****

7. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to JX469826 (Uncultured bacterium plasmid pB12, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgc	Protospacer
* ************* **** ****

8. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgc	Protospacer
* ************* **** ****

9. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to AJ639924 (Uncultured bacterium plasmid pB3 complete genome) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgt	Protospacer
* ************* **** ****

10. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgc	Protospacer
* ************* **** ****

11. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NC_019369 (Burkholderia cepacia plasmid pYS1, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgc	Protospacer
* ************* **** ****

12. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_MN366358 (Bacterium plasmid pALTS29, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgt	Protospacer
* ************* **** ****

13. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gccgttcaatggcgatgccgccgcgc	Protospacer
* ************* **** ****

14. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP040642 (Agrobacterium sp. T29 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
gatcgtcaatggcgaggacgacgcgg	Protospacer
**.  ************ ********

15. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 5, identity: 0.808

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cacgttcgatgacgaggccgacgcca	Protospacer
 ******.***.************ .

16. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 5, identity: 0.808

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cctgttcaatggcgaggctggcgcgg	Protospacer
  .***************.*.*****

17. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
cccgttcagcggcgaggccgacgcgc	Protospacer
  ******..***************

18. spacer 1.2|1599843|26|NC_014100|CRISPRCasFinder matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.769

gacgttcaatggcgaggccgacgcgg	CRISPR spacer
agtagccaatggcgaggccgacgcgg	Protospacer
.... .********************

19. spacer 1.1|1599783|29|NC_014100|CRISPRCasFinder matches to MG945860 (UNVERIFIED: Microviridae sp. isolate 17756-1502, complete genome) position: , mismatch: 8, identity: 0.724

caccgtcgcgggcggtcgtagtcgcgcca	CRISPR spacer
ttttctcgcgcgcggtcgtaatcgcgccg	Protospacer
. .. ***** *********.*******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1059767 : 1074284

Paracoccus_phage(20.0%)

tail,protease,portal,head,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106907285.1\|1059767_1061063_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.0e-71	41.8
WP_013078156.1\|1061090_1061534_-	endonuclease domain-containing protein	NA	NA	NA	NA
WP_013078157.1\|1061657_1062797_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	6.0e-68	41.6
WP_013078158.1\|1062793_1063042_+	hypothetical protein	NA	NA	NA	NA
WP_013078159.1\|1063038_1063458_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.6e-26	46.1
WP_013078160.1\|1063438_1063789_-	bleomycin resistance protein	NA	NA	NA	NA
WP_013078161.1\|1063974_1065198_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	5.7e-80	42.2
WP_013078162.1\|1065363_1065648_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013078163.1\|1065644_1066037_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013078164.1\|1066052_1066469_+\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	8.2e-07	35.4
WP_013078165.1\|1066628_1066913_+	gene transfer agent family protein	NA	NA	NA	NA
WP_106907286.1\|1066903_1067092_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_013078167.1\|1067088_1067610_+	hypothetical protein	D6PGV6	uncultured_phage	7.4e-05	40.2
WP_013078168.1\|1067704_1068106_+	DUF4437 domain-containing protein	NA	NA	NA	NA
WP_013078169.1\|1068147_1068612_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_013078170.1\|1068759_1069392_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.0e-41	44.0
WP_013078171.1\|1069391_1070024_+	DUF2163 domain-containing protein	A0A0K1Y6Z2	Rhodobacter_phage	3.5e-17	39.2
WP_013078172.1\|1070047_1070566_+	phage cell wall peptidase, NlpC/P60 family	A0A1V0DYB6	Dinoroseobacter_phage	1.6e-36	52.6
WP_083778454.1\|1071755_1074284_+	host specificity protein	A0A0K1LLC1	Rhodobacter_phage	1.3e-142	38.8

DBSCAN-SWA_2

2077372 : 2084659

Cafeteria_roenbergensis_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013079036.1\|2077372_2078371_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	5.3e-44	38.0
WP_083778376.1\|2078397_2079993_+	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	2.1e-50	32.2
WP_013079038.1\|2079989_2081204_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	4.7e-34	30.3
WP_041538264.1\|2081274_2082726_-	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	1.6e-57	33.3
WP_013079040.1\|2082787_2083654_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	8.1e-49	43.1
WP_013079041.1\|2083657_2084659_+	ADP-glyceromanno-heptose 6-epimerase	M4PRR6	Cyanophage	1.3e-26	35.6

DBSCAN-SWA_3

2865299 : 2877860

uncultured_Mediterranean_phage(62.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013079719.1\|2865299_2866415_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.5e-99	51.1
WP_013079720.1\|2866414_2867521_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_013079721.1\|2867652_2868624_+	endonuclease/exonuclease/phosphatase	NA	NA	NA	NA
WP_013079722.1\|2868679_2869147_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.6e-35	53.5
WP_013079723.1\|2869240_2870080_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.1e-21	33.7
WP_013079724.1\|2870081_2870915_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.0e-21	34.5
WP_013079725.1\|2871153_2871645_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.2e-35	49.4
WP_013079726.1\|2871672_2874429_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.0e-100	35.0
WP_013079727.1\|2874554_2875079_+	superoxide dismutase	Q9MC02	Salmonella_phage	8.8e-14	33.9
WP_013079728.1\|2875127_2875652_+	hypothetical protein	NA	NA	NA	NA
WP_167535126.1\|2875648_2876590_-	EamA family transporter	NA	NA	NA	NA
WP_013079730.1\|2876597_2877860_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.9e-18	28.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection