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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017298 Clostridium botulinum F str. 230613 plasmid pCBF, complete sequence 0 crisprs NA 0 0 0 0
NC_017297 Clostridium botulinum F str. 230613, complete genome 15 crisprs csa3,DinG,c2c9_V-U4,WYL,DEDDh,cas3,cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7,cas6,casR,cas3HD 3 17 6 0

Results visualization

1. NC_017297
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_1 1046093-1046380 Orphan III-B
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_2 1109484-1109576 Orphan III-B
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_3 1903423-1903640 Unclear NA
3 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_4 2351786-2351882 TypeIII-C III-B
1 spacers
cmr6gr7,cmr5gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_6 2352681-2352908 TypeIII III-B
3 spacers
cmr6gr7,cmr5gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_5 2352134-2352426 TypeIII III-B
4 spacers
cmr6gr7,cmr5gr11

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_7 2359490-2359780 TypeIII III-B
4 spacers
cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_8 2360034-2360193 TypeIII III-B
2 spacers
cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_10 2361041-2361200 TypeIII III-B
2 spacers
cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_9 2360473-2360766 TypeIII III-B
4 spacers
cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_11 2374002-2374313 TypeIII III-B
4 spacers
cas6,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_12 2376525-2376617 TypeIII III-B
1 spacers
cas6,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_13 2382754-2382851 TypeIII III-B
1 spacers
cas6,cmr1gr7,cas10,cmr3gr5,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_14 2476163-2476408 Unclear NA
5 spacers
casR

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017297_15 3875654-3875767 Unclear NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017297_14 14.1|2476181|30|NC_017297|CRT 2476181-2476210 30 NC_017297.1 2476157-2476186 0 1.0
NC_017297_14 14.2|2476229|30|NC_017297|CRT 2476229-2476258 30 NC_017297.1 2476157-2476186 1 0.967
NC_017297_14 14.4|2476313|18|NC_017297|CRT 2476313-2476330 18 NC_017297.1 2198240-2198257 1 0.944

1. spacer 14.1|2476181|30|NC_017297|CRT matches to position: 2476157-2476186, mismatch: 0, identity: 1.0

tctgcatcttctttcacattctcttctgca	CRISPR spacer
tctgcatcttctttcacattctcttctgca	Protospacer
******************************

2. spacer 14.2|2476229|30|NC_017297|CRT matches to position: 2476157-2476186, mismatch: 1, identity: 0.967

tctacatcttctttcacattctcttctgca	CRISPR spacer
tctgcatcttctttcacattctcttctgca	Protospacer
***.**************************

3. spacer 14.4|2476313|18|NC_017297|CRT matches to position: 2198240-2198257, mismatch: 1, identity: 0.944

tctacatcttcttctgca	CRISPR spacer
tctacttcttcttctgca	Protospacer
***** ************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017297_6 6.1|2352711|36|NC_017297|CRISPRCasFinder,CRT 2352711-2352746 36 NZ_CP013848 Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence 37322-37357 1 0.972
NC_017297_6 6.4|2352713|36|NC_017297|PILER-CR 2352713-2352748 36 NZ_CP013848 Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence 37322-37357 1 0.972
NC_017297_13 13.1|2382787|32|NC_017297|CRISPRCasFinder 2382787-2382818 32 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 64680-64711 1 0.969
NC_017297_13 13.1|2382787|32|NC_017297|CRISPRCasFinder 2382787-2382818 32 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 66917-66948 1 0.969
NC_017297_13 13.1|2382787|32|NC_017297|CRISPRCasFinder 2382787-2382818 32 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 77633-77664 1 0.969
NC_017297_13 13.1|2382787|32|NC_017297|CRISPRCasFinder 2382787-2382818 32 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 110118-110149 1 0.969
NC_017297_7 7.1|2359520|35|NC_017297|CRT 2359520-2359554 35 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 163657-163691 2 0.943
NC_017297_7 7.1|2359520|35|NC_017297|CRT 2359520-2359554 35 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 165473-165507 2 0.943
NC_017297_7 7.1|2359520|35|NC_017297|CRT 2359520-2359554 35 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 176189-176223 2 0.943
NC_017297_7 7.1|2359520|35|NC_017297|CRT 2359520-2359554 35 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 209081-209115 2 0.943
NC_017297_7 7.5|2359520|37|NC_017297|CRISPRCasFinder 2359520-2359556 37 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 163655-163691 3 0.919
NC_017297_7 7.5|2359520|37|NC_017297|CRISPRCasFinder 2359520-2359556 37 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 165471-165507 3 0.919
NC_017297_7 7.5|2359520|37|NC_017297|CRISPRCasFinder 2359520-2359556 37 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 176187-176223 3 0.919
NC_017297_7 7.5|2359520|37|NC_017297|CRISPRCasFinder 2359520-2359556 37 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 209079-209115 3 0.919
NC_017297_12 12.1|2376552|39|NC_017297|CRISPRCasFinder 2376552-2376590 39 NC_010379 Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence 39752-39790 3 0.923
NC_017297_12 12.1|2376552|39|NC_017297|CRISPRCasFinder 2376552-2376590 39 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 172657-172695 3 0.923
NC_017297_12 12.1|2376552|39|NC_017297|CRISPRCasFinder 2376552-2376590 39 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 117209-117247 3 0.923
NC_017297_12 12.1|2376552|39|NC_017297|CRISPRCasFinder 2376552-2376590 39 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 124443-124481 3 0.923
NC_017297_12 12.1|2376552|39|NC_017297|CRISPRCasFinder 2376552-2376590 39 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 264936-264974 3 0.923
NC_017297_9 9.4|2360700|36|NC_017297|CRT 2360700-2360735 36 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 64404-64439 4 0.889
NC_017297_9 9.4|2360700|36|NC_017297|CRT 2360700-2360735 36 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 66641-66676 4 0.889
NC_017297_9 9.4|2360700|36|NC_017297|CRT 2360700-2360735 36 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 77357-77392 4 0.889
NC_017297_9 9.4|2360700|36|NC_017297|CRT 2360700-2360735 36 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 109842-109877 4 0.889
NC_017297_12 12.1|2376552|39|NC_017297|CRISPRCasFinder 2376552-2376590 39 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 246041-246079 4 0.897
NC_017297_14 14.1|2476181|30|NC_017297|CRT 2476181-2476210 30 NZ_CP010418 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50c, complete sequence 54261-54290 4 0.867
NC_017297_14 14.2|2476229|30|NC_017297|CRT 2476229-2476258 30 NZ_CP010418 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50c, complete sequence 54261-54290 5 0.833
NC_017297_9 9.11|2360700|38|NC_017297|CRISPRCasFinder 2360700-2360737 38 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 64404-64441 6 0.842
NC_017297_9 9.11|2360700|38|NC_017297|CRISPRCasFinder 2360700-2360737 38 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 66641-66678 6 0.842
NC_017297_9 9.11|2360700|38|NC_017297|CRISPRCasFinder 2360700-2360737 38 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 77357-77394 6 0.842
NC_017297_9 9.11|2360700|38|NC_017297|CRISPRCasFinder 2360700-2360737 38 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 109842-109879 6 0.842
NC_017297_5 5.2|2352229|35|NC_017297|CRISPRCasFinder 2352229-2352263 35 NZ_MK275623 Clostridium perfringens strain JXJA17 plasmid p5, complete sequence 27329-27363 8 0.771
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_CP050860 Klebsiella pneumoniae strain SCH6109 plasmid pSCH6109-Vir, complete sequence 223011-223042 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_KY565557 Escherichia coli strain Mcp0221 plasmid pMcp0221, complete sequence 10287-10318 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 CP043017 Escherichia coli strain 388808_gen plasmid unnamed2, complete sequence 11824-11855 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_CP035776 Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence 48808-48839 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_CP038334 Escherichia coli O157:H7 strain N8B7-2 plasmid pN8B7-2 39354-39385 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 CP019690 Shigella sonnei strain 75/02 plasmid p75-02_2, complete sequence 33639-33670 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_CP041094 Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence 21223-21254 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_CP024459 Klebsiella pneumoniae strain QS17-0161 plasmid pMR0617aac, complete sequence 204870-204901 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 MN824002 Klebsiella pneumoniae strain N201205880 plasmid p205880-2FIIK, complete sequence 137673-137704 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 MK649826 Klebsiella pneumoniae strain 130411-38618 plasmid p130411-38618_1, complete sequence 22417-22448 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 MK649827 Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence 116259-116290 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 MK649828 Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence 21815-21846 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 MK649829 Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence 21815-21846 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_CP047635 Klebsiella pneumoniae strain K2606 plasmid unnamed2, complete sequence 22417-22448 8 0.75
NC_017297_7 7.11|2359717|32|NC_017297|PILER-CR 2359717-2359748 32 NZ_KY853650 Escherichia coli strain 347-43491A plasmid p977565, complete sequence 10035-10066 8 0.75
NC_017297_14 14.1|2476181|30|NC_017297|CRT 2476181-2476210 30 NC_021536 Synechococcus phage S-IOM18 genomic sequence 119897-119926 8 0.733
NC_017297_14 14.2|2476229|30|NC_017297|CRT 2476229-2476258 30 NZ_KT601170 Staphylococcus sciuri strain wo28-3 plasmid pwo28-3, complete sequence 25244-25273 8 0.733
NC_017297_14 14.2|2476229|30|NC_017297|CRT 2476229-2476258 30 NZ_KX982169 Staphylococcus sciuri strain wo27-9 plasmid pWo27-9, complete sequence 34158-34187 8 0.733
NC_017297_14 14.2|2476229|30|NC_017297|CRT 2476229-2476258 30 NZ_KX982171 Staphylococcus sciuri strain wo28-1 plasmid pWo28-1, complete sequence 38466-38495 8 0.733
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_CP050860 Klebsiella pneumoniae strain SCH6109 plasmid pSCH6109-Vir, complete sequence 223011-223044 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_CP035776 Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence 48806-48839 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_CP041094 Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence 21221-21254 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_CP024459 Klebsiella pneumoniae strain QS17-0161 plasmid pMR0617aac, complete sequence 204868-204901 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 MN824002 Klebsiella pneumoniae strain N201205880 plasmid p205880-2FIIK, complete sequence 137673-137706 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 MK649826 Klebsiella pneumoniae strain 130411-38618 plasmid p130411-38618_1, complete sequence 22415-22448 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 MK649827 Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence 116257-116290 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 MK649828 Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence 21813-21846 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 MK649829 Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence 21813-21846 9 0.735
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_CP047635 Klebsiella pneumoniae strain K2606 plasmid unnamed2, complete sequence 22415-22448 9 0.735
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 AP013386 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51 34426-34459 9 0.735
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 GU943014 Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence 18218-18251 9 0.735
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 GU943013 Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence 11891-11924 9 0.735
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 GU943017 Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence 7844-7877 9 0.735
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 GU943022 Uncultured phage MedDCM-OCT-S04-C890 genomic sequence 7790-7823 9 0.735
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 CP013001 Bacillus thuringiensis strain XL6 plasmid, complete sequence 131053-131086 9 0.735
NC_017297_14 14.1|2476181|30|NC_017297|CRT 2476181-2476210 30 NZ_KT601170 Staphylococcus sciuri strain wo28-3 plasmid pwo28-3, complete sequence 25244-25273 9 0.7
NC_017297_14 14.1|2476181|30|NC_017297|CRT 2476181-2476210 30 NZ_KX982169 Staphylococcus sciuri strain wo27-9 plasmid pWo27-9, complete sequence 34158-34187 9 0.7
NC_017297_14 14.1|2476181|30|NC_017297|CRT 2476181-2476210 30 NZ_KX982171 Staphylococcus sciuri strain wo28-1 plasmid pWo28-1, complete sequence 38466-38495 9 0.7
NC_017297_3 3.2|1903512|40|NC_017297|CRISPRCasFinder 1903512-1903551 40 NC_018689 Bacillus thuringiensis MC28 plasmid pMC429, complete sequence 417214-417253 10 0.75
NC_017297_5 5.1|2352164|35|NC_017297|CRISPRCasFinder 2352164-2352198 35 NC_008259 Enterococcus faecium plasmid pCIZ2, complete sequence 1636-1670 10 0.714
NC_017297_7 7.2|2359585|36|NC_017297|CRT 2359585-2359620 36 AP013386 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51 34426-34461 10 0.722
NC_017297_7 7.2|2359585|36|NC_017297|CRT 2359585-2359620 36 GU943014 Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence 18218-18253 10 0.722
NC_017297_7 7.2|2359585|36|NC_017297|CRT 2359585-2359620 36 GU943013 Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence 11891-11926 10 0.722
NC_017297_7 7.2|2359585|36|NC_017297|CRT 2359585-2359620 36 GU943017 Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence 7842-7877 10 0.722
NC_017297_7 7.2|2359585|36|NC_017297|CRT 2359585-2359620 36 GU943022 Uncultured phage MedDCM-OCT-S04-C890 genomic sequence 7788-7823 10 0.722
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_KY565557 Escherichia coli strain Mcp0221 plasmid pMcp0221, complete sequence 10287-10320 10 0.706
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 CP043017 Escherichia coli strain 388808_gen plasmid unnamed2, complete sequence 11824-11857 10 0.706
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_CP038334 Escherichia coli O157:H7 strain N8B7-2 plasmid pN8B7-2 39352-39385 10 0.706
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 CP019690 Shigella sonnei strain 75/02 plasmid p75-02_2, complete sequence 33637-33670 10 0.706
NC_017297_7 7.4|2359716|34|NC_017297|CRT 2359716-2359749 34 NZ_KY853650 Escherichia coli strain 347-43491A plasmid p977565, complete sequence 10033-10066 10 0.706
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 KC821626 Cellulophaga phage phi39:1, complete genome 23600-23633 10 0.706
NC_017297_7 7.9|2359586|34|NC_017297|PILER-CR 2359586-2359619 34 MG543995 Staphylococcus phage UPMK_1, partial genome 138793-138826 10 0.706
NC_017297_13 13.1|2382787|32|NC_017297|CRISPRCasFinder 2382787-2382818 32 MF979562 Pectobacterium phage DU_PP_III, complete genome 7298-7329 10 0.688

1. spacer 6.1|2352711|36|NC_017297|CRISPRCasFinder,CRT matches to NZ_CP013848 (Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence) position: , mismatch: 1, identity: 0.972

acataatcagatgttagaagtacttcacgaattaag	CRISPR spacer
acataatcagatgttagaagtacttcaggaattaag	Protospacer
*************************** ********

2. spacer 6.4|2352713|36|NC_017297|PILER-CR matches to NZ_CP013848 (Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence) position: , mismatch: 1, identity: 0.972

acataatcagatgttagaagtacttcacgaattaag	CRISPR spacer
acataatcagatgttagaagtacttcaggaattaag	Protospacer
*************************** ********

3. spacer 13.1|2382787|32|NC_017297|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 1, identity: 0.969

taattatcattataaaaaccctcatccatatg	CRISPR spacer
taattatcattataaaaatcctcatccatatg	Protospacer
******************.*************

4. spacer 13.1|2382787|32|NC_017297|CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 1, identity: 0.969

taattatcattataaaaaccctcatccatatg	CRISPR spacer
taattatcattataaaaatcctcatccatatg	Protospacer
******************.*************

5. spacer 13.1|2382787|32|NC_017297|CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 1, identity: 0.969

taattatcattataaaaaccctcatccatatg	CRISPR spacer
taattatcattataaaaatcctcatccatatg	Protospacer
******************.*************

6. spacer 13.1|2382787|32|NC_017297|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 1, identity: 0.969

taattatcattataaaaaccctcatccatatg	CRISPR spacer
taattatcattataaaaatcctcatccatatg	Protospacer
******************.*************

7. spacer 7.1|2359520|35|NC_017297|CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 2, identity: 0.943

atagatgaaatagaaatagttatagatttaattga	CRISPR spacer
atagatgaaattcaaatagttatagatttaattga	Protospacer
***********  **********************

8. spacer 7.1|2359520|35|NC_017297|CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 2, identity: 0.943

atagatgaaatagaaatagttatagatttaattga	CRISPR spacer
atagatgaaattcaaatagttatagatttaattga	Protospacer
***********  **********************

9. spacer 7.1|2359520|35|NC_017297|CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 2, identity: 0.943

atagatgaaatagaaatagttatagatttaattga	CRISPR spacer
atagatgaaattcaaatagttatagatttaattga	Protospacer
***********  **********************

10. spacer 7.1|2359520|35|NC_017297|CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 2, identity: 0.943

atagatgaaatagaaatagttatagatttaattga	CRISPR spacer
atagatgaaattcaaatagttatagatttaattga	Protospacer
***********  **********************

11. spacer 7.5|2359520|37|NC_017297|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 3, identity: 0.919

atagatgaaatagaaatagttatagatttaattgaat	CRISPR spacer
atagatgaaattcaaatagttatagatttaattgaag	Protospacer
***********  *********************** 

12. spacer 7.5|2359520|37|NC_017297|CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 3, identity: 0.919

atagatgaaatagaaatagttatagatttaattgaat	CRISPR spacer
atagatgaaattcaaatagttatagatttaattgaag	Protospacer
***********  *********************** 

13. spacer 7.5|2359520|37|NC_017297|CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 3, identity: 0.919

atagatgaaatagaaatagttatagatttaattgaat	CRISPR spacer
atagatgaaattcaaatagttatagatttaattgaag	Protospacer
***********  *********************** 

14. spacer 7.5|2359520|37|NC_017297|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 3, identity: 0.919

atagatgaaatagaaatagttatagatttaattgaat	CRISPR spacer
atagatgaaattcaaatagttatagatttaattgaag	Protospacer
***********  *********************** 

15. spacer 12.1|2376552|39|NC_017297|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 3, identity: 0.923

ttattgcctatatgatagacgaagattatagattcttat	CRISPR spacer
atattgcctatatgatagacgaagattatagattctttg	Protospacer
 ************************************  

16. spacer 12.1|2376552|39|NC_017297|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 3, identity: 0.923

ttattgcctatatgatagacgaagattatagattcttat	CRISPR spacer
atattgcctatatgatagacgaagattatagattctttg	Protospacer
 ************************************  

17. spacer 12.1|2376552|39|NC_017297|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 3, identity: 0.923

ttattgcctatatgatagacgaagattatagattcttat	CRISPR spacer
atattgcctatatgatagacgaagattatagattctttg	Protospacer
 ************************************  

18. spacer 12.1|2376552|39|NC_017297|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 3, identity: 0.923

ttattgcctatatgatagacgaagattatagattcttat	CRISPR spacer
atattgcctatatgatagacgaagattatagattctttg	Protospacer
 ************************************  

19. spacer 12.1|2376552|39|NC_017297|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 3, identity: 0.923

ttattgcctatatgatagacgaagattatagattcttat	CRISPR spacer
atattgcctatatgatagacgaagattatagattctttg	Protospacer
 ************************************  

20. spacer 9.4|2360700|36|NC_017297|CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 4, identity: 0.889

aggtgaagaaattggagatactttagaagcagtttg	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttg	Protospacer
 .*.****************************.***

21. spacer 9.4|2360700|36|NC_017297|CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 4, identity: 0.889

aggtgaagaaattggagatactttagaagcagtttg	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttg	Protospacer
 .*.****************************.***

22. spacer 9.4|2360700|36|NC_017297|CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 4, identity: 0.889

aggtgaagaaattggagatactttagaagcagtttg	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttg	Protospacer
 .*.****************************.***

23. spacer 9.4|2360700|36|NC_017297|CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 4, identity: 0.889

aggtgaagaaattggagatactttagaagcagtttg	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttg	Protospacer
 .*.****************************.***

24. spacer 12.1|2376552|39|NC_017297|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 4, identity: 0.897

ttattgcctatatgatagacgaagattatagattcttat	CRISPR spacer
atattgcttatatgatagacgaagattatagattctttg	Protospacer
 ******.*****************************  

25. spacer 14.1|2476181|30|NC_017297|CRT matches to NZ_CP010418 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50c, complete sequence) position: , mismatch: 4, identity: 0.867

tctgcatcttctttcacattctctt-ctgca	CRISPR spacer
acggcatcttctttcatattctcttgctgc-	Protospacer
 * *************.******** **** 

26. spacer 14.2|2476229|30|NC_017297|CRT matches to NZ_CP010418 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50c, complete sequence) position: , mismatch: 5, identity: 0.833

tctacatcttctttcacattctctt-ctgca	CRISPR spacer
acggcatcttctttcatattctcttgctgc-	Protospacer
 * .************.******** **** 

27. spacer 9.11|2360700|38|NC_017297|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 6, identity: 0.842

aggtgaagaaattggagatactttagaagcagtttgat	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttgtg	Protospacer
 .*.****************************.***  

28. spacer 9.11|2360700|38|NC_017297|CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 6, identity: 0.842

aggtgaagaaattggagatactttagaagcagtttgat	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttgtg	Protospacer
 .*.****************************.***  

29. spacer 9.11|2360700|38|NC_017297|CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 6, identity: 0.842

aggtgaagaaattggagatactttagaagcagtttgat	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttgtg	Protospacer
 .*.****************************.***  

30. spacer 9.11|2360700|38|NC_017297|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 6, identity: 0.842

aggtgaagaaattggagatactttagaagcagtttgat	CRISPR spacer
tagcgaagaaattggagatactttagaagcagcttgtg	Protospacer
 .*.****************************.***  

31. spacer 5.2|2352229|35|NC_017297|CRISPRCasFinder matches to NZ_MK275623 (Clostridium perfringens strain JXJA17 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.771

gagaatgtatttaagaatacaataaatgaatacaa	CRISPR spacer
atggaagaagttaataatacaataaataaatacaa	Protospacer
. *.* * * **** ************.*******

32. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_CP050860 (Klebsiella pneumoniae strain SCH6109 plasmid pSCH6109-Vir, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

33. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_KY565557 (Escherichia coli strain Mcp0221 plasmid pMcp0221, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgat	Protospacer
**.********* *********** *. *...

34. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to CP043017 (Escherichia coli strain 388808_gen plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgat	Protospacer
**.********* *********** *. *...

35. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_CP035776 (Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

36. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_CP038334 (Escherichia coli O157:H7 strain N8B7-2 plasmid pN8B7-2) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgat	Protospacer
**.********* *********** *. *...

37. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to CP019690 (Shigella sonnei strain 75/02 plasmid p75-02_2, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgat	Protospacer
**.********* *********** *. *...

38. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

39. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_CP024459 (Klebsiella pneumoniae strain QS17-0161 plasmid pMR0617aac, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

40. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to MN824002 (Klebsiella pneumoniae strain N201205880 plasmid p205880-2FIIK, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

41. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to MK649826 (Klebsiella pneumoniae strain 130411-38618 plasmid p130411-38618_1, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

42. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to MK649827 (Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

43. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to MK649828 (Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

44. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to MK649829 (Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

45. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_CP047635 (Klebsiella pneumoniae strain K2606 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaaca	Protospacer
*** **************** *** *   *  

46. spacer 7.11|2359717|32|NC_017297|PILER-CR matches to NZ_KY853650 (Escherichia coli strain 347-43491A plasmid p977565, complete sequence) position: , mismatch: 8, identity: 0.75

ataataaatatgcatgtgaatatgtacttagc	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgat	Protospacer
**.********* *********** *. *...

47. spacer 14.1|2476181|30|NC_017297|CRT matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 8, identity: 0.733

tctgcatcttctttcacattctcttctgca	CRISPR spacer
actgcatcttctttcacaatttctaccagt	Protospacer
 ***************** *.*** *..  

48. spacer 14.2|2476229|30|NC_017297|CRT matches to NZ_KT601170 (Staphylococcus sciuri strain wo28-3 plasmid pwo28-3, complete sequence) position: , mismatch: 8, identity: 0.733

tctacatcttctttcacattctcttctgca	CRISPR spacer
gtaacatcttctttcacattttctttatta	Protospacer
 . *****************.****.  .*

49. spacer 14.2|2476229|30|NC_017297|CRT matches to NZ_KX982169 (Staphylococcus sciuri strain wo27-9 plasmid pWo27-9, complete sequence) position: , mismatch: 8, identity: 0.733

tctacatcttctttcacattctcttctgca	CRISPR spacer
gtaacatcttctttcacattttctttatta	Protospacer
 . *****************.****.  .*

50. spacer 14.2|2476229|30|NC_017297|CRT matches to NZ_KX982171 (Staphylococcus sciuri strain wo28-1 plasmid pWo28-1, complete sequence) position: , mismatch: 8, identity: 0.733

tctacatcttctttcacattctcttctgca	CRISPR spacer
gtaacatcttctttcacattttctttatta	Protospacer
 . *****************.****.  .*

51. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_CP050860 (Klebsiella pneumoniae strain SCH6109 plasmid pSCH6109-Vir, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

52. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_CP035776 (Klebsiella pneumoniae strain R46 plasmid pR46-270, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

53. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

54. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_CP024459 (Klebsiella pneumoniae strain QS17-0161 plasmid pMR0617aac, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

55. spacer 7.4|2359716|34|NC_017297|CRT matches to MN824002 (Klebsiella pneumoniae strain N201205880 plasmid p205880-2FIIK, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

56. spacer 7.4|2359716|34|NC_017297|CRT matches to MK649826 (Klebsiella pneumoniae strain 130411-38618 plasmid p130411-38618_1, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

57. spacer 7.4|2359716|34|NC_017297|CRT matches to MK649827 (Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

58. spacer 7.4|2359716|34|NC_017297|CRT matches to MK649828 (Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

59. spacer 7.4|2359716|34|NC_017297|CRT matches to MK649829 (Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

60. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_CP047635 (Klebsiella pneumoniae strain K2606 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atactaaatatgcatgtgaagatggaaaaacact	Protospacer
*** **************** *** *   *  .*

61. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to AP013386 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51) position: , mismatch: 9, identity: 0.735

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgac	Protospacer
.  ******* ***************.**.  *.

62. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to GU943014 (Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence) position: , mismatch: 9, identity: 0.735

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgac	Protospacer
.  ******* ***************.**.  *.

63. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to GU943013 (Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence) position: , mismatch: 9, identity: 0.735

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgac	Protospacer
.  ******* ***************.**.  *.

64. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to GU943017 (Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence) position: , mismatch: 9, identity: 0.735

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgac	Protospacer
.  ******* ***************.**.  *.

65. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to GU943022 (Uncultured phage MedDCM-OCT-S04-C890 genomic sequence) position: , mismatch: 9, identity: 0.735

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgac	Protospacer
.  ******* ***************.**.  *.

66. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
tttaaagtagatgaaaaaggtaaattaattaaaa	Protospacer
 ****** **********.****** ..* * * 

67. spacer 14.1|2476181|30|NC_017297|CRT matches to NZ_KT601170 (Staphylococcus sciuri strain wo28-3 plasmid pwo28-3, complete sequence) position: , mismatch: 9, identity: 0.7

tctgcatcttctttcacattctcttctgca	CRISPR spacer
gtaacatcttctttcacattttctttatta	Protospacer
 . .****************.****.  .*

68. spacer 14.1|2476181|30|NC_017297|CRT matches to NZ_KX982169 (Staphylococcus sciuri strain wo27-9 plasmid pWo27-9, complete sequence) position: , mismatch: 9, identity: 0.7

tctgcatcttctttcacattctcttctgca	CRISPR spacer
gtaacatcttctttcacattttctttatta	Protospacer
 . .****************.****.  .*

69. spacer 14.1|2476181|30|NC_017297|CRT matches to NZ_KX982171 (Staphylococcus sciuri strain wo28-1 plasmid pWo28-1, complete sequence) position: , mismatch: 9, identity: 0.7

tctgcatcttctttcacattctcttctgca	CRISPR spacer
gtaacatcttctttcacattttctttatta	Protospacer
 . .****************.****.  .*

70. spacer 3.2|1903512|40|NC_017297|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 10, identity: 0.75

tatttaaaggatttaaactta---catcatttagatttaagag	CRISPR spacer
tatttaaaggatttaaacttagttcattacataggttatc---	Protospacer
*********************   ***.*. ***.**      

71. spacer 5.1|2352164|35|NC_017297|CRISPRCasFinder matches to NC_008259 (Enterococcus faecium plasmid pCIZ2, complete sequence) position: , mismatch: 10, identity: 0.714

gtatcttctaagttttctgtattagatatttatgg	CRISPR spacer
attgcttccaagatttctgtattagatatgctttc	Protospacer
.*  ****.*** **************** . *  

72. spacer 7.2|2359585|36|NC_017297|CRT matches to AP013386 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51) position: , mismatch: 10, identity: 0.722

gttaaagaagatgaaaaaagtaaataggtgatatta	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgacaa	Protospacer
.  ******* ***************.**.  *. *

73. spacer 7.2|2359585|36|NC_017297|CRT matches to GU943014 (Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence) position: , mismatch: 10, identity: 0.722

gttaaagaagatgaaaaaagtaaataggtgatatta	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgacaa	Protospacer
.  ******* ***************.**.  *. *

74. spacer 7.2|2359585|36|NC_017297|CRT matches to GU943013 (Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence) position: , mismatch: 10, identity: 0.722

gttaaagaagatgaaaaaagtaaataggtgatatta	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgacaa	Protospacer
.  ******* ***************.**.  *. *

75. spacer 7.2|2359585|36|NC_017297|CRT matches to GU943017 (Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence) position: , mismatch: 10, identity: 0.722

gttaaagaagatgaaaaaagtaaataggtgatatta	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgacaa	Protospacer
.  ******* ***************.**.  *. *

76. spacer 7.2|2359585|36|NC_017297|CRT matches to GU943022 (Uncultured phage MedDCM-OCT-S04-C890 genomic sequence) position: , mismatch: 10, identity: 0.722

gttaaagaagatgaaaaaagtaaataggtgatatta	CRISPR spacer
aaaaaagaagttgaaaaaagtaaataagtatgacaa	Protospacer
.  ******* ***************.**.  *. *

77. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_KY565557 (Escherichia coli strain Mcp0221 plasmid pMcp0221, complete sequence) position: , mismatch: 10, identity: 0.706

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgatga	Protospacer
**.********* *********** *. *...  

78. spacer 7.4|2359716|34|NC_017297|CRT matches to CP043017 (Escherichia coli strain 388808_gen plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgatga	Protospacer
**.********* *********** *. *...  

79. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_CP038334 (Escherichia coli O157:H7 strain N8B7-2 plasmid pN8B7-2) position: , mismatch: 10, identity: 0.706

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgatga	Protospacer
**.********* *********** *. *...  

80. spacer 7.4|2359716|34|NC_017297|CRT matches to CP019690 (Shigella sonnei strain 75/02 plasmid p75-02_2, complete sequence) position: , mismatch: 10, identity: 0.706

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgatga	Protospacer
**.********* *********** *. *...  

81. spacer 7.4|2359716|34|NC_017297|CRT matches to NZ_KY853650 (Escherichia coli strain 347-43491A plasmid p977565, complete sequence) position: , mismatch: 10, identity: 0.706

ataataaatatgcatgtgaatatgtacttagctt	CRISPR spacer
atgataaatatgaatgtgaatatgaatatgatga	Protospacer
**.********* *********** *. *...  

82. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to KC821626 (Cellulophaga phage phi39:1, complete genome) position: , mismatch: 10, identity: 0.706

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
attaaacaagatggaaaaagtaaatttaagttta	Protospacer
.***** ******.***********  . * *  

83. spacer 7.9|2359586|34|NC_017297|PILER-CR matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 10, identity: 0.706

gttaaagaagatgaaaaaagtaaataggtgatat	CRISPR spacer
gacaaagaagatgaaaaaaataaagagaaaaatg	Protospacer
* .****************.**** **. .*   

84. spacer 13.1|2382787|32|NC_017297|CRISPRCasFinder matches to MF979562 (Pectobacterium phage DU_PP_III, complete genome) position: , mismatch: 10, identity: 0.688

taattatcattataaaaaccctcatccatatg	CRISPR spacer
gcgaggtcattataataacccgcatccatttt	Protospacer
  .  .********* ***** ******* * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1733058 : 1741270 7 uncultured_phage(33.33%) NA NA
DBSCAN-SWA_2 1966595 : 2055534 80 Clostridium_phage(51.43%) portal,tail,terminase,capsid,integrase,head,protease attL 2010013:2010030|attR 2067214:2067231
DBSCAN-SWA_3 2528453 : 2588159 68 Clostridium_phage(63.04%) tail,terminase,protease,portal NA
DBSCAN-SWA_4 3093288 : 3102891 8 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_5 3253962 : 3275563 27 Clostridium_phage(85.71%) NA NA
DBSCAN-SWA_6 3378914 : 3462532 85 Clostridium_phage(54.05%) bacteriocin,holin,tail,terminase,capsid,tRNA,integrase,head,protease attL 3416520:3416539|attR 3451774:3451793
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage