CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_014132	Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704, complete sequence	0 crisprs	csa3	0
NC_014133	Leuconostoc kimchii IMSNU 11154 plasmid LkipL4719, complete sequence	0 crisprs	NA	0
NC_014135	Leuconostoc kimchii IMSNU 11154 plasmid LkipL48, complete sequence	0 crisprs	NA	0
NC_014136	Leuconostoc kimchii IMSNU 11154, complete sequence	0 crisprs	DEDDh,csa3,cas3	5
NC_014131	Leuconostoc kimchii IMSNU 11154 plasmid LkipL4701, complete sequence	0 crisprs	csa3	2
NC_014134	Leuconostoc kimchii IMSNU 11154 plasmid LkipL4726, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22274 : 60008

Pectobacterium_phage(14.29%)

transposase,holin,protease,integrase

attL 40844:40875|attR 43695:43726

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013102175.1\|22274_24173_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1L2CUT6	Pectobacterium_phage	2.9e-59	31.9
WP_013102176.1\|24169_24652_-	hypothetical protein	NA	NA	NA	NA
WP_013102177.1\|24665_26933_-	toprim domain-containing protein	NA	NA	NA	NA
WP_013102178.1\|26919_27186_-	hypothetical protein	NA	NA	NA	NA
WP_010006596.1\|27642_28011_+	hypothetical protein	NA	NA	NA	NA
WP_013102179.1\|28014_28359_+	hypothetical protein	NA	NA	NA	NA
WP_013102180.1\|28369_28741_+	hypothetical protein	NA	NA	NA	NA
WP_013102181.1\|28727_28940_+	hypothetical protein	NA	NA	NA	NA
WP_013102182.1\|29315_29537_+	hypothetical protein	NA	NA	NA	NA
WP_002814575.1\|29536_29980_+	hypothetical protein	NA	NA	NA	NA
WP_013102183.1\|29972_30185_+	hypothetical protein	NA	NA	NA	NA
WP_013102184.1\|30195_30414_+	hypothetical protein	NA	NA	NA	NA
WP_013102185.1\|30860_31091_+	hypothetical protein	NA	NA	NA	NA
WP_013102186.1\|31071_31395_+	hypothetical protein	NA	NA	NA	NA
WP_013102188.1\|31800_32055_-	hypothetical protein	NA	NA	NA	NA
WP_013102189.1\|32051_32420_-	hypothetical protein	E3W8I0	Leuconostoc_phage	4.7e-14	40.4
WP_013102190.1\|32412_33735_-	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	9.1e-84	39.3
WP_013102191.1\|33956_34061_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_176608530.1\|34358_36431_-\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
WP_013102192.1\|36483_39012_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_148215504.1\|39094_41308_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
40844:40875	attL	NA	NA	NA	NA
WP_013102194.1\|41300_42383_+\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	4.7e-62	39.4
WP_013102195.1\|42439_45991_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
43695:43726	attR	NA	NA	NA	NA
WP_013102196.1\|46052_49637_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_013102197.1\|49654_50233_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_013102198.1\|50236_50836_-	DUF1819 family protein	NA	NA	NA	NA
WP_083774968.1\|51302_51872_+	hypothetical protein	NA	NA	NA	NA
WP_041773482.1\|52107_52743_+	DUF4230 domain-containing protein	NA	NA	NA	NA
WP_003643772.1\|53716_55048_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013102204.1\|55125_56097_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-23	31.7
WP_002814535.1\|56097_57624_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_011679766.1\|57861_58308_+	ribonuclease H	NA	NA	NA	NA
WP_041773551.1\|59012_59720_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.2e-26	36.7
WP_004912700.1\|59765_60008_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	4.0e-06	36.1

DBSCAN-SWA_2

285068 : 383727

103

Lactobacillus_phage(25.58%)

portal,integrase,capsid,terminase,head,protease,tRNA,tail

attL 303154:303176|attR 383849:383871

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013102440.1\|285068_286784_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_013102441.1\|286857_288111_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_013102442.1\|288116_288911_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_013102443.1\|288914_289691_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.9e-21	41.3
WP_013102444.1\|289802_291608_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	7.8e-86	36.0
WP_013102445.1\|291812_293468_+	adenine deaminase	NA	NA	NA	NA
WP_013102446.1\|293470_293983_+	hypothetical protein	NA	NA	NA	NA
WP_013102447.1\|294033_296442_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.7e-81	47.0
WP_013102448.1\|296717_297230_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_013102449.1\|297226_298393_-	AI-2E family transporter	NA	NA	NA	NA
WP_013102450.1\|298582_299533_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
WP_013102451.1\|299525_300551_+	phosphomevalonate kinase	NA	NA	NA	NA
WP_013102452.1\|300553_301609_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_013102453.1\|301628_302984_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
303154:303176	attL	NA	NA	NA	NA
WP_013102455.1\|303484_304048_-	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	8.5e-15	35.4
WP_013102456.1\|304044_305340_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.0e-19	32.7
WP_013102457.1\|305581_306799_-	OFA family MFS transporter	NA	NA	NA	NA
WP_013102458.1\|306968_307772_-	esterase family protein	NA	NA	NA	NA
WP_013102459.1\|307817_309482_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_013102460.1\|309575_310820_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_013102461.1\|310989_311451_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_013102462.1\|311516_313043_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.2e-68	46.9
WP_013102463.1\|313039_313630_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.6e-26	38.0
WP_013102464.1\|313623_314661_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FZ01	Synechococcus_phage	6.1e-59	41.7
WP_013102465.1\|314657_316268_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.1e-49	33.3
WP_013102466.1\|316249_318472_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.0e-137	39.7
WP_013102467.1\|318515_319184_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013102468.1\|319180_319447_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013102469.1\|319458_320202_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	1.1e-38	38.2
WP_013102470.1\|320167_321304_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_013102471.1\|321300_321786_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	45.6
WP_013102472.1\|322090_323566_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_013102473.1\|324142_324535_-	cell division regulator GpsB	NA	NA	NA	NA
WP_049762265.1\|324610_325183_-	DUF1273 domain-containing protein	NA	NA	NA	NA
WP_013102475.1\|325232_327410_-	penicillin-binding protein	NA	NA	NA	NA
WP_013102476.1\|327433_328048_-	Holliday junction resolvase RecU	A0A1C8E9C3	Bacillus_phage	1.9e-20	32.7
WP_013102477.1\|328177_328573_-	hypothetical protein	NA	NA	NA	NA
WP_013102478.1\|328633_329371_-	hypothetical protein	NA	NA	NA	NA
WP_013102479.1\|329483_330320_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_013102480.1\|330461_330773_+	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	9.5e-08	46.2
WP_013102481.1\|331134_331314_+	hypothetical protein	NA	NA	NA	NA
WP_013102482.1\|331493_332153_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_013102483.1\|332301_332607_-	hypothetical protein	NA	NA	NA	NA
WP_013102484.1\|332619_333711_-	lysozyme M1 (1,4-beta-N-acetylmuramidase)	E3W8H6	Leuconostoc_phage	9.6e-172	81.8
WP_013102485.1\|333736_334036_-	hypothetical protein	NA	NA	NA	NA
WP_013102486.1\|334022_334424_-	hypothetical protein	NA	NA	NA	NA
WP_013102487.1\|334433_336884_-	hypothetical protein	Q6SEC0	Lactobacillus_prophage	3.4e-07	43.3
WP_013102488.1\|336892_337873_-	hypothetical protein	A0A060AGT0	Cronobacter_phage	1.3e-05	26.4
WP_083774971.1\|337894_339019_-\|tail	phage tail protein	A0A0M7RDS2	Lactobacillus_phage	3.0e-67	41.8
WP_013102490.1\|339026_339779_-\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	4.2e-17	28.8
WP_013102491.1\|339875_345509_-\|tail	phage tail tape measure protein	Q8LTK2	Lactococcus_phage	5.1e-184	39.8
WP_013102493.1\|345718_346129_-	hypothetical protein	NA	NA	NA	NA
WP_013102494.1\|346206_346848_-\|tail	phage tail protein	A0A286QNY3	Streptococcus_phage	6.7e-24	34.0
WP_013102495.1\|346851_347226_-	DUF806 family protein	NA	NA	NA	NA
WP_013102496.1\|347225_347639_-	HK97 gp10 family phage protein	A8YQJ5	Lactobacillus_phage	8.4e-20	41.8
WP_013102497.1\|347628_348000_-\|head	phage head closure protein	NA	NA	NA	NA
WP_013102498.1\|347992_348319_-\|head,tail	phage gp6-like head-tail connector protein	Q6J1Y1	Lactobacillus_phage	7.1e-22	53.3
WP_013102499.1\|348329_349493_-\|capsid	phage major capsid protein	Q6J1Y2	Lactobacillus_phage	2.0e-135	64.9
WP_013102500.1\|349506_350196_-\|protease	Clp protease ClpP	Q6J1Y3	Lactobacillus_phage	5.8e-58	51.8
WP_013102501.1\|350192_351335_-\|portal	phage portal protein	Q6J1Y4	Lactobacillus_phage	9.0e-96	50.4
WP_013102502.1\|351338_351527_-	DUF1056 family protein	NA	NA	NA	NA
WP_013102503.1\|351523_353407_-\|terminase	terminase large subunit	A8YQI8	Lactobacillus_phage	8.6e-237	63.6
WP_041773569.1\|353390_353912_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_013102506.1\|354480_355014_-	HNH endonuclease	NA	NA	NA	NA
WP_013102507.1\|355020_355524_-	hypothetical protein	NA	NA	NA	NA
WP_013102508.1\|355529_355790_-	hypothetical protein	NA	NA	NA	NA
WP_013102509.1\|355804_356140_-	hypothetical protein	NA	NA	NA	NA
WP_013102510.1\|356142_356340_-	hypothetical protein	NA	NA	NA	NA
WP_013102511.1\|356824_357244_-	DUF722 domain-containing protein	A0A097BYG4	Leuconostoc_phage	1.6e-13	36.5
WP_013102513.1\|357343_357556_-	hypothetical protein	NA	NA	NA	NA
WP_013102514.1\|357552_357825_-	hypothetical protein	NA	NA	NA	NA
WP_187286361.1\|357827_357980_-	hypothetical protein	NA	NA	NA	NA
WP_013102517.1\|358047_358359_-	hypothetical protein	NA	NA	NA	NA
WP_013102518.1\|358342_358564_-	hypothetical protein	NA	NA	NA	NA
WP_013102519.1\|358572_359637_-\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	4.1e-18	28.3
WP_013102520.1\|359617_360280_-	SAM-dependent DNA methyltransferase	A0A097BYG1	Leuconostoc_phage	2.2e-54	48.4
WP_013102522.1\|360533_360932_-	dTDP-glucose pyrophosphorylase	A0A0P0IJF8	Lactobacillus_phage	6.4e-25	54.3
WP_013102523.1\|361073_361247_-	hypothetical protein	NA	NA	NA	NA
WP_013102524.1\|361233_361923_-	hypothetical protein	A0A097BYG8	Leuconostoc_phage	1.1e-104	80.2
WP_013102525.1\|362046_362688_-	ERF family protein	A0A2H4J439	uncultured_Caudovirales_phage	1.7e-06	33.6
WP_013102526.1\|362687_363584_-	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_013102527.1\|363597_363783_-	hypothetical protein	NA	NA	NA	NA
WP_013102528.1\|363877_364027_-	hypothetical protein	NA	NA	NA	NA
WP_013102529.1\|364023_364797_-	ATP-binding protein	E9LUM7	Lactobacillus_phage	6.0e-35	39.3
WP_013102530.1\|364800_365592_-	conserved phage C-terminal domain-containing protein	D7RWG1	Brochothrix_phage	1.0e-82	67.9
WP_013102531.1\|365594_365801_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013102532.1\|365897_366446_+	hypothetical protein	C9E2Q0	Enterococcus_phage	4.5e-13	30.2
WP_013102534.1\|366552_366726_-	hypothetical protein	NA	NA	NA	NA
WP_013102535.1\|366736_366997_-	hypothetical protein	NA	NA	NA	NA
WP_013102536.1\|367053_367797_-	phage antirepressor KilAC domain-containing protein	E3W8C2	Leuconostoc_phage	6.0e-109	84.6
WP_013102537.1\|367887_368148_+	hypothetical protein	E9LUL8	Lactobacillus_phage	3.7e-05	46.8
WP_013102538.1\|368239_368476_-	DUF739 family protein	NA	NA	NA	NA
WP_013102539.1\|368645_369338_+	LexA family transcriptional regulator	A0A097BY95	Leuconostoc_phage	2.6e-58	52.8
WP_013102541.1\|370549_371620_+\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	5.9e-33	28.3
WP_013102542.1\|371684_373232_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.0e-13	29.7
WP_013102543.1\|373285_374266_-	IMP dehydrogenase	NA	NA	NA	NA
WP_013102544.1\|374289_375462_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	7.9e-39	38.0
WP_013102545.1\|375893_376787_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_013102546.1\|376786_377335_-	LemA family protein	NA	NA	NA	NA
WP_013102547.1\|377409_378327_-	hypothetical protein	NA	NA	NA	NA
WP_013102548.1\|378330_379182_-	hypothetical protein	NA	NA	NA	NA
WP_013102549.1\|379302_381249_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_013102550.1\|381315_383727_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	65.6
383849:383871	attR	NA	NA	NA	NA

DBSCAN-SWA_3

748641 : 759898

Lactococcus_phage(36.36%)

portal,integrase,capsid,terminase,head,protease,tail

attL 741562:741576|attR 762659:762673

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
741562:741576	attL	NA	NA	NA	NA
WP_013102921.1\|748641_749898_+	virulence protein E	A0A2P0ZLC4	Lactobacillus_phage	1.2e-88	46.1
WP_013102922.1\|750168_750360_+	hypothetical protein	NA	NA	NA	NA
WP_013102923.1\|750363_750777_+	DUF722 domain-containing protein	NA	NA	NA	NA
WP_013102924.1\|750852_751353_+	HNH endonuclease	Q9AZM8	Lactococcus_phage	2.8e-54	60.8
WP_013102925.1\|751669_752146_+\|terminase	phage terminase small subunit P27 family	A0A0M7REI3	Lactobacillus_phage	3.3e-20	37.6
WP_013102926.1\|752142_753978_+\|terminase	terminase large subunit	Q9AZM6	Lactococcus_phage	5.1e-210	60.0
WP_013102927.1\|753990_754155_+	hypothetical protein	NA	NA	NA	NA
WP_013102928.1\|754151_755225_+\|portal	phage portal protein	Q9AZM4	Lactococcus_phage	1.2e-105	54.1
WP_013102929.1\|755221_755791_+\|head,protease	HK97 family phage prohead protease	Q9AZM3	Lactococcus_phage	8.0e-45	54.7
WP_013102930.1\|755802_756945_+\|capsid	phage major capsid protein	A0A2H4J7D0	uncultured_Caudovirales_phage	9.7e-50	40.2
WP_013102931.1\|757000_757300_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013102932.1\|757292_757637_+\|head	phage head closure protein	Q6J1Y0	Lactobacillus_phage	5.6e-09	33.9
WP_013102933.1\|757651_757840_+	hypothetical protein	A0A097BYD9	Leuconostoc_phage	2.4e-22	79.3
WP_013102934.1\|757948_759076_+\|integrase	site-specific integrase	A0A097BYJ7	Leuconostoc_phage	3.4e-180	82.4
WP_013102935.1\|759238_759898_-	GIY-YIG nuclease family protein	A0A097BYI4	Leuconostoc_phage	3.0e-104	81.7
762659:762673	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1356651 : 1364659

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013103516.1\|1356651_1357296_+	dTMP kinase	M1PSC7	Streptococcus_phage	3.8e-51	50.0
WP_013103517.1\|1357301_1357631_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_013103518.1\|1357630_1358557_+	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	5.0e-12	33.3
WP_013103519.1\|1358559_1359441_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.3e-80	56.2
WP_013103520.1\|1359492_1360230_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_013103521.1\|1360270_1361263_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.4e-51	37.1
WP_013103522.1\|1361653_1362277_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_013103523.1\|1362358_1363120_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_013103524.1\|1363190_1363832_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.1e-50	46.2
WP_013103525.1\|1363891_1364659_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	7.5e-22	30.9

DBSCAN-SWA_5

1863052 : 1918682

Leuconostoc_phage(23.81%)

portal,integrase,capsid,terminase,tRNA,tail

attL 1878994:1879010|attR 1919985:1920001

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013104004.1\|1863052_1864177_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_004899901.1\|1864287_1864473_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013104005.1\|1864555_1865002_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.8e-15	37.7
WP_013104006.1\|1865094_1865961_+	S1 RNA-binding protein	NA	NA	NA	NA
WP_013104007.1\|1865960_1866857_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.1e-44	34.9
WP_013104008.1\|1866896_1867265_+	hypothetical protein	NA	NA	NA	NA
WP_013104009.1\|1867231_1868008_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.5e-09	32.8
WP_013104010.1\|1868000_1868603_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.8e-15	33.3
WP_013104011.1\|1868595_1869345_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_013104012.1\|1869593_1870181_+	ECF transporter S component	NA	NA	NA	NA
WP_013104013.1\|1870257_1870815_+	hypothetical protein	NA	NA	NA	NA
WP_013104014.1\|1870828_1871506_+	(d)CMP kinase	NA	NA	NA	NA
WP_013104015.1\|1871601_1872789_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_013104016.1\|1872892_1874206_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010385704.1\|1874399_1874675_+	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	1.8e-26	69.7
WP_013104017.1\|1874942_1876208_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013104019.1\|1876311_1877523_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	2.5e-43	51.2
WP_013104020.1\|1877509_1878025_+	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	1.1e-21	36.4
WP_013104021.1\|1878017_1878869_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.7e-14	42.5
1878994:1879010	attL	NA	NA	NA	NA
WP_013104022.1\|1879048_1880104_-\|integrase	site-specific integrase	E3W8I1	Leuconostoc_phage	9.0e-50	38.1
WP_013104023.1\|1880367_1881078_-	DUF4352 domain-containing protein	O21991	Streptococcus_virus	2.1e-10	44.4
WP_013104024.1\|1881124_1881403_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_013104025.1\|1881415_1881754_-	helix-turn-helix transcriptional regulator	R4IDX0	Listeria_phage	9.3e-17	44.0
WP_013104026.1\|1882018_1882243_+	hypothetical protein	E3W8C0	Leuconostoc_phage	3.7e-30	90.5
WP_013104027.1\|1882255_1882960_+	ORF6C domain-containing protein	A0A1S5SEX2	Streptococcus_phage	1.8e-38	40.8
WP_013104029.1\|1883171_1883399_-	hypothetical protein	NA	NA	NA	NA
WP_013104030.1\|1883525_1884326_+	ORF6C domain-containing protein	A0A0M5M1L9	Bacillus_phage	1.0e-45	38.5
WP_148215511.1\|1884348_1884582_+	hypothetical protein	NA	NA	NA	NA
WP_013104032.1\|1884591_1884807_+	hypothetical protein	NA	NA	NA	NA
WP_013104033.1\|1884818_1884992_+	hypothetical protein	NA	NA	NA	NA
WP_013104034.1\|1884996_1885158_+	hypothetical protein	NA	NA	NA	NA
WP_013104035.1\|1885138_1885552_-	hypothetical protein	NA	NA	NA	NA
WP_013104036.1\|1885714_1885921_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	6.5e-05	46.0
WP_013104037.1\|1885923_1886733_+	conserved phage C-terminal domain-containing protein	A0A0K0MX39	Streptococcus_phage	8.9e-66	54.3
WP_013104038.1\|1886736_1887510_+	ATP-binding protein	E9LUM7	Lactobacillus_phage	1.7e-34	38.8
WP_013104039.1\|1887506_1887656_+	hypothetical protein	NA	NA	NA	NA
WP_013104040.1\|1887750_1887987_+	hypothetical protein	A0A097BYE5	Leuconostoc_phage	1.2e-15	55.8
WP_013104041.1\|1887987_1888389_+	hypothetical protein	A0A097BYE9	Leuconostoc_phage	6.0e-55	78.9
WP_013104042.1\|1888416_1889046_+	ERF family protein	A0A1P8BKZ7	Lactococcus_phage	2.4e-18	45.8
WP_013104043.1\|1889168_1889870_+	hypothetical protein	E3W8D3	Leuconostoc_phage	4.4e-85	63.1
WP_013104044.1\|1889872_1890304_+	RusA family crossover junction endodeoxyribonuclease	D7RWN7	Brochothrix_phage	1.5e-19	39.1
WP_013104045.1\|1890313_1890571_+	hypothetical protein	NA	NA	NA	NA
WP_013104046.1\|1890570_1891233_+	SAM-dependent DNA methyltransferase	A0A097BYG1	Leuconostoc_phage	4.9e-54	48.8
WP_148215509.1\|1891518_1891725_+	hypothetical protein	NA	NA	NA	NA
WP_187286359.1\|1891729_1891879_+	hypothetical protein	NA	NA	NA	NA
WP_013104049.1\|1891882_1892299_+	DUF722 domain-containing protein	A0A097BYG4	Leuconostoc_phage	1.1e-06	28.6
WP_013104050.1\|1892560_1893148_+	hypothetical protein	NA	NA	NA	NA
WP_013104051.1\|1893480_1893618_+	hypothetical protein	NA	NA	NA	NA
WP_013104052.1\|1893649_1894507_+	hypothetical protein	NA	NA	NA	NA
WP_013104053.1\|1894490_1894991_+	TIR domain-containing protein	NA	NA	NA	NA
WP_013104054.1\|1895187_1895358_+	hypothetical protein	A0A097BYC4	Leuconostoc_phage	1.6e-17	78.6
WP_013104055.1\|1895357_1896575_+	hypothetical protein	A0A097BYC5	Leuconostoc_phage	1.4e-203	85.0
WP_013104056.1\|1896584_1896881_+	hypothetical protein	NA	NA	NA	NA
WP_013104057.1\|1896877_1897393_+\|terminase	terminase small subunit	A0A097BYC9	Leuconostoc_phage	1.6e-44	68.5
WP_013104058.1\|1897367_1898666_+\|terminase	PBSX family phage terminase large subunit	A8ASJ2	Listeria_phage	1.6e-128	54.0
WP_013104059.1\|1898725_1900240_+\|portal	phage portal protein	O03928	Lactobacillus_phage	2.8e-121	48.3
WP_013104060.1\|1900236_1901376_+\|capsid	phage capsid protein	O03929	Lactobacillus_phage	7.8e-92	54.9
WP_013104061.1\|1901463_1902093_+	phage scaffolding protein	Q9T1B8	Listeria_phage	6.8e-29	43.8
WP_013104062.1\|1902096_1903056_+\|capsid	N4-gp56 family major capsid protein	A8ASJ6	Listeria_phage	2.5e-75	53.6
WP_013104063.1\|1903072_1903498_+	hypothetical protein	NA	NA	NA	NA
WP_041773540.1\|1903475_1903844_+\|capsid	phage capsid protein	O03932	Lactobacillus_phage	2.4e-26	54.4
WP_013104065.1\|1903843_1904203_+	hypothetical protein	O03933	Lactobacillus_phage	6.0e-14	43.9
WP_013104066.1\|1904202_1904598_+\|capsid	phage capsid protein	NA	NA	NA	NA
WP_013104067.1\|1904601_1905078_+	hypothetical protein	O03972	Lactobacillus_phage	4.0e-42	59.0
WP_013104068.1\|1905157_1905571_+	hypothetical protein	NA	NA	NA	NA
WP_013104069.1\|1905570_1906197_+	hypothetical protein	U3PFU8	Lactobacillus_phage	7.3e-15	32.4
WP_187286383.1\|1907225_1911353_+	C40 family peptidase	A0A2P0VJB7	Streptococcus_phage	3.7e-83	36.1
WP_013104071.1\|1911342_1912182_+\|tail	phage tail family protein	D2KRB8	Lactobacillus_phage	3.3e-55	42.8
WP_013104072.1\|1912181_1913291_+\|tail	phage tail protein	O03938	Lactobacillus_phage	1.8e-48	33.7
WP_013104073.1\|1913293_1914259_+	hypothetical protein	A0A060AGT0	Cronobacter_phage	2.8e-05	29.2
WP_013104074.1\|1914267_1916718_+	hypothetical protein	Q6SEC0	Lactobacillus_prophage	2.2e-06	42.4
WP_013104075.1\|1916727_1917129_+	hypothetical protein	NA	NA	NA	NA
WP_013104076.1\|1917115_1917415_+	hypothetical protein	NA	NA	NA	NA
WP_013104077.1\|1917438_1917777_+	hypothetical protein	NA	NA	NA	NA
WP_013104078.1\|1917779_1918682_+	N-acetylmuramoyl-L-alanine amidase	A0A0S2MY35	Enterococcus_phage	1.4e-67	71.0
1919985:1920001	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_014131

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4313

uncultured_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012304814.1\|977_1634_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_012304815.1\|1673_1994_+	thiol reductase thioredoxin	A0A218MMB7	uncultured_virus	3.5e-05	30.1
WP_013102081.1\|2118_2499_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_013102082.1\|2503_3058_+	recombinase family protein	A0A0A8WIK3	Clostridium_phage	8.3e-31	42.9
WP_167524327.1\|3218_4025_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	3.8e-32	36.4
WP_012304818.1\|4070_4313_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.8e-06	37.3

DBSCAN-SWA_2

8526 : 19703

Erysipelothrix_phage(60.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013102087.1\|8526_11721_+	DEAD/DEAH box helicase family protein	A0A2K5B2B9	Erysipelothrix_phage	7.8e-222	42.2
WP_013102088.1\|11721_12279_+	hypothetical protein	NA	NA	NA	NA
WP_013102089.1\|12282_14142_+	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	1.9e-79	32.9
WP_013102090.1\|14176_17293_+	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	8.9e-130	34.2
WP_080514236.1\|17725_17863_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_013102092.1\|18103_18415_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.1e-15	35.7
WP_012304810.1\|18439_18766_+	thioredoxin family protein	NA	NA	NA	NA
WP_012304811.1\|18773_19703_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.8e-79	48.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014136

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_014131

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection