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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014150 Brachyspira murdochii DSM 12563, complete sequence 4 crisprs WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh 0 7 3 0

Results visualization

1. NC_014150
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014150_1 433533-433683 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014150_2 1428031-1431218 Unclear NA
47 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014150_3 1620794-1620928 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014150_4 1715561-1715747 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014150_2 2.38|1428196|36|NC_014150|CRISPRCasFinder 1428196-1428231 36 NZ_MH785233 Staphylococcus aureus strain ph2 plasmid pPH2, complete sequence 13824-13859 9 0.75
NC_014150_2 2.47|1428801|37|NC_014150|CRISPRCasFinder 1428801-1428837 37 MT774392 CrAssphage cr128_1, complete genome 84699-84735 9 0.757
NC_014150_2 2.3|1428195|37|NC_014150|PILER-CR,CRT 1428195-1428231 37 NZ_MH785233 Staphylococcus aureus strain ph2 plasmid pPH2, complete sequence 13823-13859 10 0.73
NC_014150_2 2.12|1428800|38|NC_014150|PILER-CR,CRT 1428800-1428837 38 MT774392 CrAssphage cr128_1, complete genome 84698-84735 10 0.737
NC_014150_2 2.45|1428666|37|NC_014150|CRISPRCasFinder 1428666-1428702 37 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 952166-952202 10 0.73
NC_014150_2 2.78|1430882|35|NC_014150|CRISPRCasFinder,PILER-CR 1430882-1430916 35 MG883711 Microviridae sp. isolate Pig183, complete genome 1737-1771 10 0.714
NC_014150_2 2.45|1428666|37|NC_014150|CRISPRCasFinder 1428666-1428702 37 MT075580 Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence 118905-118941 11 0.703
NC_014150_2 2.79|1430948|37|NC_014150|CRISPRCasFinder,PILER-CR 1430948-1430984 37 NC_017543 Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence 184029-184065 11 0.703

1. spacer 2.38|1428196|36|NC_014150|CRISPRCasFinder matches to NZ_MH785233 (Staphylococcus aureus strain ph2 plasmid pPH2, complete sequence) position: , mismatch: 9, identity: 0.75

tgcaaaacaatctaatattatatcattctcatttga	CRISPR spacer
catgaagaaatccaatattatatcattttcatttgt	Protospacer
....**. ****.**************.******* 

2. spacer 2.47|1428801|37|NC_014150|CRISPRCasFinder matches to MT774392 (CrAssphage cr128_1, complete genome) position: , mismatch: 9, identity: 0.757

gttgtttttgttgtaattctaatgctttttgctgttt	CRISPR spacer
tatatttttcttgtaattctaatgcttcttgttctgg	Protospacer
  *.***** *****************.***.* *  

3. spacer 2.3|1428195|37|NC_014150|PILER-CR,CRT matches to NZ_MH785233 (Staphylococcus aureus strain ph2 plasmid pPH2, complete sequence) position: , mismatch: 10, identity: 0.73

atgcaaaacaatctaatattatatcattctcatttga	CRISPR spacer
ccatgaagaaatccaatattatatcattttcatttgt	Protospacer
 ....**. ****.**************.******* 

4. spacer 2.12|1428800|38|NC_014150|PILER-CR,CRT matches to MT774392 (CrAssphage cr128_1, complete genome) position: , mismatch: 10, identity: 0.737

agttgtttttgttgtaattctaatgctttttgctgttt	CRISPR spacer
ttatatttttcttgtaattctaatgcttcttgttctgg	Protospacer
   *.***** *****************.***.* *  

5. spacer 2.45|1428666|37|NC_014150|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.73

ctctattaattaaagcattatttaataatttattttt	CRISPR spacer
tttcattaattaaagcgttaattaataattcagcagt	Protospacer
.*..************.*** *********.* .  *

6. spacer 2.78|1430882|35|NC_014150|CRISPRCasFinder,PILER-CR matches to MG883711 (Microviridae sp. isolate Pig183, complete genome) position: , mismatch: 10, identity: 0.714

agctatcattgatgcacaaaatgaattgaatgagt	CRISPR spacer
aaaggtgattgatgcaaaaaatgaatttaatgctc	Protospacer
*.  .* ********* ********** ****  .

7. spacer 2.45|1428666|37|NC_014150|CRISPRCasFinder matches to MT075580 (Lysinibacillus sphaericus strain SSII-1 plasmid pSSII-1, complete sequence) position: , mismatch: 11, identity: 0.703

ctctattaattaaagcattatttaataatttattttt	CRISPR spacer
tgtaagcagggaaagccttatttaataaattattttt	Protospacer
. . * .*.  ***** *********** ********

8. spacer 2.79|1430948|37|NC_014150|CRISPRCasFinder,PILER-CR matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 11, identity: 0.703

aataaacaaacaacatcattattaattatgccaactt	CRISPR spacer
aataaacaaacaacacaattattaatagggaaagaca	Protospacer
***************. ********* . *  *. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1736030 : 1742139 6 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 1884980 : 1953892 57 Stenotrophomonas_phage(11.11%) tail,tRNA,capsid,integrase,protease,head attL 1895136:1895153|attR 1944450:1944467
DBSCAN-SWA_3 2557494 : 2579259 27 Campylobacter_phage(20.0%) tail,capsid,integrase,protease,head attL 2547143:2547158|attR 2558753:2558768
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage