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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014209 Thermoanaerobacter mathranii subsp. mathranii str. A3, complete genome 3 crisprs cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas2,cas8b1 0 5 1 0

Results visualization

1. NC_014209
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014209_1 21980-25625 Unclear I-A
55 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014209_2 791663-793751 TypeIII NA
31 spacers
cmr3gr5,cas10,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014209_3 2216141-2217710 TypeI-B NA
23 spacers
cas4,cas3,cas5,cas7,cas8b1,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014209_1 1.37|24377|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT 24377-24413 37 MN150686 Bacillus phage BC-T25, complete genome 10572-10608 9 0.757
NC_014209_1 1.37|24377|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT 24377-24413 37 KX961630 Bacillus phage QCM8, complete genome 10642-10678 9 0.757
NC_014209_1 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25431-25466 36 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 300525-300560 9 0.75
NC_014209_1 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25431-25466 36 NZ_CP013238 Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence 418876-418911 9 0.75
NC_014209_1 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25431-25466 36 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 376245-376280 9 0.75
NC_014209_1 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25431-25466 36 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 78560-78595 9 0.75
NC_014209_1 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25431-25466 36 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 78601-78636 9 0.75
NC_014209_1 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25431-25466 36 NZ_AP019717 Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence 408389-408424 9 0.75
NC_014209_3 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR 2216505-2216540 36 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1551014-1551049 9 0.75
NC_014209_3 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR 2216505-2216540 36 NZ_CP040741 Enterococcus faecium strain VRE1 plasmid pVRE1-1, complete sequence 142131-142166 9 0.75
NC_014209_1 1.37|24377|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT 24377-24413 37 MK779875 Lactococcus phage CHPC971, complete genome 26488-26524 10 0.73
NC_014209_2 2.10|792290|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT 792290-792326 37 KU686197 Synechococcus phage S-CAM3 isolate 0808SB25, complete genome 32823-32859 10 0.73
NC_014209_2 2.10|792290|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT 792290-792326 37 KU686199 Synechococcus phage S-CAM3 isolate 1010CC42, complete genome 32811-32847 10 0.73
NC_014209_2 2.10|792290|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT 792290-792326 37 KU686198 Synechococcus phage S-CAM3 isolate 0910TB04, complete genome 32830-32866 10 0.73
NC_014209_3 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR 2216505-2216540 36 NZ_CP009636 Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence 196876-196911 10 0.722
NC_014209_3 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR 2216505-2216540 36 NZ_CP053962 Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence 22319-22354 10 0.722
NC_014209_3 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR 2216505-2216540 36 MN693201 Marine virus AFVG_25M427, complete genome 46686-46721 10 0.722
NC_014209_1 1.50|25236|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT 25236-25271 36 KF114877 Leptospira phage LnoZ_CZ214, complete genome 74132-74167 11 0.694

1. spacer 1.37|24377|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to MN150686 (Bacillus phage BC-T25, complete genome) position: , mismatch: 9, identity: 0.757

ttaaaacctcttcttttcttttttgttgataatattc	CRISPR spacer
tttggaactcttcttttctttttcgttcataatttat	Protospacer
** ..* ****************.*** ***** * .

2. spacer 1.37|24377|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to KX961630 (Bacillus phage QCM8, complete genome) position: , mismatch: 9, identity: 0.757

ttaaaacctcttcttttcttttttgttgataatattc	CRISPR spacer
tttggaactcttcttttctttttcgttcataatttat	Protospacer
** ..* ****************.*** ***** * .

3. spacer 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.75

taaaacatctatagatacattaaaaagagccgtatc	CRISPR spacer
tccaacatttatagatacattaaaaacagtattaat	Protospacer
*  *****.***************** **.  ** .

4. spacer 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 9, identity: 0.75

taaaacatctatagatacattaaaaagagccgtatc	CRISPR spacer
tccaacatttatagatacattaaaaacagtattaat	Protospacer
*  *****.***************** **.  ** .

5. spacer 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.75

taaaacatctatagatacattaaaaagagccgtatc	CRISPR spacer
tccaacatttatagatacattaaaaacagtattaat	Protospacer
*  *****.***************** **.  ** .

6. spacer 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 9, identity: 0.75

taaaacatctatagatacattaaaaagagccgtatc	CRISPR spacer
tccaacatttatagatacattaaaaacagtattaat	Protospacer
*  *****.***************** **.  ** .

7. spacer 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 9, identity: 0.75

taaaacatctatagatacattaaaaagagccgtatc	CRISPR spacer
tccaacatttatagatacattaaaaacagtattaat	Protospacer
*  *****.***************** **.  ** .

8. spacer 1.53|25431|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.75

taaaacatctatagatacattaaaaagagccgtatc	CRISPR spacer
tccaacatttatagatacattaaaaacagtattaat	Protospacer
*  *****.***************** **.  ** .

9. spacer 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.75

cattttgcaaacgaaaaagataaaaatctttaaaaa-----	CRISPR spacer
cattttgcaaacgaaaaagacacaaat-----ggaatcgtc	Protospacer
********************.* ****     ..**     

10. spacer 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040741 (Enterococcus faecium strain VRE1 plasmid pVRE1-1, complete sequence) position: , mismatch: 9, identity: 0.75

cattttgcaaacgaaaaagataaaaatctttaaaaa	CRISPR spacer
aatttgacaaacgaaaaagataaaaatgggaaatat	Protospacer
 **** .********************    ** * 

11. spacer 1.37|24377|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to MK779875 (Lactococcus phage CHPC971, complete genome) position: , mismatch: 10, identity: 0.73

ttaaaacctcttcttttcttttttgttgataatattc	CRISPR spacer
ttacaacctcttctttttttttttgtctttaaggagg	Protospacer
*** *************.********.  *** .   

12. spacer 2.10|792290|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 10, identity: 0.73

tttcgccagcgctagcatttgcactgttagctaataa	CRISPR spacer
tatttcctgcggtagcatttgcactgttagctctcgg	Protospacer
* *. ** *** ********************  ...

13. spacer 2.10|792290|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 10, identity: 0.73

tttcgccagcgctagcatttgcactgttagctaataa	CRISPR spacer
tatttcctgcggtagcatttgcactgttagctctcgg	Protospacer
* *. ** *** ********************  ...

14. spacer 2.10|792290|37|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 10, identity: 0.73

tttcgccagcgctagcatttgcactgttagctaataa	CRISPR spacer
tatttcctgcggtagcatttgcactgttagctctcgg	Protospacer
* *. ** *** ********************  ...

15. spacer 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 10, identity: 0.722

cattttgcaaacgaaaaagataaaaatctttaaaaa	CRISPR spacer
gcttttgcagatgaaaaagataaaaatcagattaga	Protospacer
  *******.*.****************     *.*

16. spacer 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

cattttgcaaacgaaaaagataaaaatctttaaaaa	CRISPR spacer
gcttttgcagatgaaaaagataaaaatcagattaga	Protospacer
  *******.*.****************     *.*

17. spacer 3.6|2216505|36|NC_014209|CRISPRCasFinder,CRT,PILER-CR matches to MN693201 (Marine virus AFVG_25M427, complete genome) position: , mismatch: 10, identity: 0.722

------cattttgcaaacgaaaaagataaaaatctttaaaaa	CRISPR spacer
gaagagca------aaacgaaaaagagaaaaagctttaaatc	Protospacer
      **      ************ ***** *******  

18. spacer 1.50|25236|36|NC_014209|PILER-CR,CRISPRCasFinder,CRT matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 11, identity: 0.694

ttaagcaattttacaaaaatgtaaaattcttgcttg	CRISPR spacer
actttcaattttacaaaaatataagattcttcgata	Protospacer
 .   ***************.***.******   *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14408 : 60988 41 Staphylococcus_phage(25.0%) terminase,portal,tRNA,transposase,capsid,integrase attL 25929:25944|attR 60991:61006
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage