CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013446	Comamonas thiooxydans, complete sequence	2 crisprs	DEDDh,WYL,Cas9_archaeal,csa3,DinG,cas3	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013446_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013446_1

1014789-1014894

Orphan

Consensus_repeat	Method
GGTGGCGAGCGTCAAGAGCGCAGCTTCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_013446_1

>merge|NC_013446|1|1014789-1014894|CRISPRCasFinder
GGTGGCGAGCGTCAAGAGCGCAGCTTCGAGCGTCGTGATGATCGCGGCAGCTTTGGTGGTGATCGCGGCGGTTTCCGTGGTGGCGAGCGTCAAGAGCGCAGCTTCG

>NC_013446|1|1|1014789-1014894|CRISPRCasFinder
GGTGGCGAGCGTCAAGAGCGCAGCTTCG	AGCGTCGTGATGATCGCGGCAGCTTTGGTGGTGATCGCGGCGGTTTCCGT
GGTGGCGAGCGTCAAGAGCGCAGCTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013446.2\|WP_034356559.1\|1006585_1007284_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NC_013446.2\|WP_003067835.1\|1007331_1008315_+\|CobD/CbiB-family-protein	unknown	unknown	gnl\|CDD\|236068
NC_013446.2\|WP_012837218.1\|1024867_1027351_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236976
NC_013446.2\|WP_012837208.1\|1008461_1009352_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381617
NC_013446.2\|WP_012837214.1\|1018371_1019349_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235479
NC_013446.2\|WP_012837206.1\|1005169_1005949_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_013446.2\|WP_012837210.1\|1010487_1010826_-\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NC_013446.2\|WP_003067818.1\|1015351_1016584_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NC_013446.2\|WP_012837213.1\|1017274_1018153_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NC_013446.2\|WP_012837219.1\|1027421_1029386_-\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|225752
NC_013446.2\|WP_012837211.1\|1010845_1012147_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320702
NC_013446.2\|WP_003067838.1\|1006088_1006475_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NC_013446.2\|WP_012837216.1\|1020302_1021799_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_013446.2\|WP_003076776.1\|1012261_1012786_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NC_013446.2\|WP_167332975.1\|1023158_1024685_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NC_013446.2\|WP_012837209.1\|1009495_1010482_-\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631
NC_013446.2\|WP_012837215.1\|1019548_1020196_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NC_013446.2\|WP_003067798.1\|1029618_1030449_-\|hypothetical-protein	unknown	unknown	unknown
NC_013446.2\|WP_041743921.1\|1021924_1023097_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NC_013446.2\|WP_003067842.1\|1004546_1005116_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650

Protein	Function_ID	Function_description	E-value
NC_013446.2\|WP_034356559.1\|1006585_1007284_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	4.14124e-68
NC_013446.2\|WP_003067835.1\|1007331_1008315_+\|CobD/CbiB-family-protein	gnl\|CDD\|236068	PRK07630, PRK07630, CobD/CbiB family protein; Provisional.	7.12615e-113
NC_013446.2\|WP_012837218.1\|1024867_1027351_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|236976	PRK11773, uvrD, DNA-dependent helicase II; Provisional.	0
NC_013446.2\|WP_012837208.1\|1008461_1009352_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381617	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70. Uncharacterized lytic transglycosylase (LT) with a conserved sequence pattern suggesting similarity to the Slt70, a 70kda soluble lytic transglycosylase which also has an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.55967e-39
NC_013446.2\|WP_012837214.1\|1018371_1019349_-\|GMP-reductase	gnl\|CDD\|235479	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NC_013446.2\|WP_012837206.1\|1005169_1005949_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.25327e-135
NC_013446.2\|WP_012837210.1\|1010487_1010826_-\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	1.0257e-42
NC_013446.2\|WP_003067818.1\|1015351_1016584_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.19289e-93
NC_013446.2\|WP_012837213.1\|1017274_1018153_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.20163e-94
NC_013446.2\|WP_012837219.1\|1027421_1029386_-\|DUF839-domain-containing-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	5.41684e-09
NC_013446.2\|WP_012837211.1\|1010845_1012147_-\|M48-family-metallopeptidase	gnl\|CDD\|320702	cd07343, M48A_Zmpste24p_like, Peptidase M48 subfamily A, a type 1 CaaX endopeptidase. This family contains peptidase family M48 subfamily A which includes a number of well-characterized genes such as those found in humans (ZMPSTE24, also known as farnesylated protein-converting enzyme 1 or FACE-1 or Hs Ste24), Taenia solium metacestode (TsSte24p), Arabidopsis (AtSte24) and yeast (Ste24p). Ste24p contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is thought to be intimately associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. Ste24p is involved in the post-translational processing of prelamin A to mature lamin A, a major component of the nuclear envelope. ZmpSte24 deficiency causes an accumulation of prelamin A leading to lipodystrophy and other disease phenotypes, while mutations in this gene or in that encoding its substrate, prelamin A, result in a series of human inherited diseases known as laminopathies, the most severe of which are Hutchinson Gilford progeria syndrome (HGPS) and restrictive dermopathy (RD) which arise due to unsuccessful maturation of prelamin A. Two forms of mandibuloacral dysplasia, a condition that causes a variety of abnormalities involving bone development, skin pigmentation, and fat distribution, are caused by mutations in two different genes; mutations in the LMNA gene, which normally provides instructions for making lamin A and lamin C, cause mandibuloacral dysplasia with A-type lipodystrophy (MAD-A), and mutations in the ZMPSTE24 gene cause mandibuloacral dysplasia with B-type lipodystrophy (MAD-B). Within cells, these genes are involved in maintaining the structure of the nucleus and may play a role in many cellular processes. Certain HIV protease inhibitors have been shown to inhibit the enzymatic activity of ZMPSTE24, but not enzymes involved in prelamin A processing.	0
NC_013446.2\|WP_003067838.1\|1006088_1006475_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.40851e-68
NC_013446.2\|WP_012837216.1\|1020302_1021799_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.85799e-97
NC_013446.2\|WP_003076776.1\|1012261_1012786_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	4.02388e-123
NC_013446.2\|WP_167332975.1\|1023158_1024685_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.74253e-129
NC_013446.2\|WP_012837209.1\|1009495_1010482_-\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	2.67787e-112
NC_013446.2\|WP_012837215.1\|1019548_1020196_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	8.0867e-23
NC_013446.2\|WP_041743921.1\|1021924_1023097_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	2.05518e-102
NC_013446.2\|WP_003067842.1\|1004546_1005116_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.06648e-68

>NC_013446.2|WP_003076776.1|1012261_1012786_+|oligoribonuclease
MVWLDCEMTGLNPDRDRIIEIAVVVSSSDLQIRVEGPVFAIHQSDELLGGMDAWNKGTHGKSGLIDKVKASTISEAEAEAALIAFLGKYVPKGKTPLCGNSIGQDRRFMERYMPKLNNFFHYRNIDVSTLKELAKRWKPEAYTSFKKAQRHTALADVHESIDELQHYRQQLLSV
>NC_013446.2|WP_012837211.1|1010845_1012147_-|M48-family-metallopeptidase
MASRLDFTLALSLLFATAVALQWLLRVWLVSRQVRHVATHRNAVPPAFAHRISLSAHQKAADYTLAKARVSLIDITLSAAVLLCWTLLGGLDWLNRWLLEFISPGLWQQLALLASFAVISALIELPLSLYQTFRLEQRFGFNQMTPGLWLADLLKSTLVGAIIGLPLAALILWLMGSTGPLWWLWAWGAWTAFNLLLMWIFPSFIAPLFNKFEPLADESLKSRVTRLMERCGFAAKGLFVMDGSRRSAHANAYFTGFGNSKRVVFFDTLLRQLSPGEVEAVLAHELGHFKHKHISKRMVLMFGVSLLGFALLGWLSQQLWFYTGLGVSVLQGPNIGVAAENNALALLLFMLAVPVFSFFVTPLMSAMSRRDEFEADAYAMQQADGAQLASALLKLYEDNASTLTPDPWYVSFYYSHPPAVDRLARMPAPAGSL
>NC_013446.2|WP_012837210.1|1010487_1010826_-|4a-hydroxytetrahydrobiopterin-dehydratase
MSTPTLQQKDWSQLKRSALSTEQVQEQLATLEGWELLAGDAAISKTFRFVNFYETMAFVNALALIAHQQDHHPDLEVGYNRCKVSLNTHDVGGISETDIDCARRIEALLNPA
>NC_013446.2|WP_012837209.1|1009495_1010482_-|ribosome-small-subunit-dependent-GTPase-A
MAKQGRRPGAQATGDTQTGLVVASYGRHCVVETPDGERRICHPRGKKSQAVAGDHVQWLAPPPGQGDEGTIEKIVERRNVFYRQDDIRTKTFAANLDQLLILIAAEPVFSEVQLARALIAAEAAHIKPIIALNKMDLEEPFLRAWQRLEPYRTMRDAANAAPHYMVLPLSLEDADDEDRDAIIGLLEGKTTLVLGPSGVGKSTLINLLLPDAKVATNEISQALNTGKHTTTSTTLYWVDEARTTAIIDSPGFQEFGLYHIAATQLAACMPDIGALADQCKFYNCTHLHEPGCAVMAQVEAQDSPHSISANRYRIYGELFDELSQEPRY
>NC_013446.2|WP_012837208.1|1008461_1009352_-|transglycosylase-SLT-domain-containing-protein
MKPRVLQPCLQAALAVALSAGMSLAWAQGTDSAPSWEDEPPTLSRWIEEGYKAELSRQPWRAAQRYCAAARYGSLEAQYRLGRLLLLGRGLTPDPATGTTLLALAAQRGHEKARLLLAGKLPGDRLPDCLTQGDAPAQEFLEASQEAVPHEVVASYVSSLPREKRRMAELVQRLAPRFSIDPRLALAIVRSESNFEAQALSPRNAQGLMQLIPETAERFGVRDAWNPEQNVRGGLAYLRWLLERFEGDVALVSAAYNAGERTVQQYGGVPPYAETREYVRRILSFYRAKHHERPAR
>NC_013446.2|WP_003067835.1|1007331_1008315_+|CobD/CbiB-family-protein
MSFFAILIALLLEQARPLARSNLVQAGYRAWTVTVRSNFDAGKPHHGWLAWAMAVLLPSVIVLGIFWALMEFIGWPAAMLWNVAVLYVTLGFRQFSHHFTRIRDALDAGDEFAARQALADWQQVDASEVPRSEVVRHVIEYSVLAAHRHVFGVLFWFSILSALGLGPLGAILYRMAEYLSRAWSRKGAEGLRAPTSERLQSAAAKAWYVIDWLPARLTALSFAMVGSFEEAIDNWRVYAQRFPNDNDGVILAATAGAINVRLGGEALRRRDAADGEEGDDAQWTGSDVTPGREPEMAHLRSVVGLVWRSVVVWLLLLALLTFARLLG
>NC_013446.2|WP_034356559.1|1006585_1007284_+|CoA-pyrophosphatase
MPASDNSSLPVVGIVDPRKARLLGIDSQLPAVPLAAQTPQALRTRFAQPPQWLPEAMQEKRITARQPSDAAVLVPIVMREQPTVLLTVRSARLSTHSGQVAFPGGKRDPQDVSAEATALREAHEEVGLAPKNVEVLGRLPIYVTGTAFHITPVVALVHPQASYFPNPGEVADLFEVPLSYLLNPAHHERHAMLWQGVDREWFAMPYQDGEQQRYIWGATAGMLRNLYRFLAA
>NC_013446.2|WP_003067838.1|1006088_1006475_+|50S-ribosomal-protein-L19
MNLIQTLEQEEIARLNKTIPEFAPGDTVIVSVNVVEGNRKRVQAYEGVVIAKRNRGLNSGFTVRKISSGEGVERTFQTYSPLIAKIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQRVNKTAAAAE
>NC_013446.2|WP_012837206.1|1005169_1005949_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRFDIITLFPELFAPFLESGVTRRAYSSGQVAVHLWNPRDWAEGNYRRVDDRPFGGGPGMVMMAEPLQRCLEAIRSARAEVDAQEQAEPAPVVLFSPIGTTLKHAVVADWAESRGAVLLCGRYEGIDQRFIDRNVTHQLSLGDFVLSGGELAAMVLLDSLARLQPGVLNDEGSFQQDSFNPALDGLLDCPHYTRPEVWNDQEVPAALLSGHHSNIERWRRDQRLSITAEHRPELIEQAREQGLLNAKDEGFLAKTASKL
>NC_013446.2|WP_003067842.1|1004546_1005116_+|ribosome-maturation-factor-RimM
MSHMPVLQATSLPADAIEVGRIADAWGIKGWFKVHAFSSAPEALFAAKDWFLQPAEKGAKHFTGTVVLPVKQARFHADTIVATSLEVADRNAAEALRGARVFVAREHFPKTEDGEFYWVDLMGLNVVNREGVTLGVVKDLMATGPQTVLVLGYEQDGKEQERLIPFVDAYVDSVDLAGKKIVADWQPDY
>NC_013446.2|WP_003067818.1|1015351_1016584_-|multidrug-effflux-MFS-transporter
MQNDLSTFWRGPRWTLAMLLAILGMLGPFSVDTYIPAFSGIAKALGATPVEMQQTLSAYLLGFAFMNLFHGALADSFGRRPVILWGLVMFTIASAGCALSQNITQLVIFRTLQGLSTGAGIVVSRAIVRDIFPPTQAQGVMAQITIFFGVAPALAPVIGGWLFVHLSWQAVFWFLSIVGVLLWLINVKFLPESLPPQKRQPFQFRPLMQGYGILLTDPRFLLLALASGIPFNGMFLYLLSAPAFLGDILQLEPTQFFWFFIATIGGIMAGSWTSGRLAGRIPPKRQIRHGFLVMCVTSIINLVANLIWPAHVSWALIPISLFAYGWALMVPVVTLLVLDIHPARRGLASSLQAVVGSVANGFVAGVIAPLVMHSAALLATGSILMMLIGLVAWIYLHHHWPDIGRHASEH
>NC_013446.2|WP_012837213.1|1017274_1018153_-|NAD(P)-dependent-oxidoreductase
MNTLKIAVLGTGMMGLPMARRLAQAGHEVHVWNRTRAKAEPLAADGVSIHDSAADAVRGVDFAVSLLESGAIVGEVLFTLGVADAMPKGSLFIDMASIQPREAREHAGKLAALGVRHLDAPVSGGTLGAQAGTLAIMAGGEAADFEHALPVFAALGRATHVGPHGAGQLAKLANQMIVGITIGAVAEALLLAERGGADPAKVREAISGGFADSRILQVHGERMVKHDFAPRGRMTVQLKDMRNAIATAEEVGFDAPITGLLEQLYAEGVKNGLGDLDQAGLFVELQRRNALD
>NC_013446.2|WP_012837214.1|1018371_1019349_-|GMP-reductase
MEIFDYDNILLLPRMCRVESRSECDTSVVLGNRSFKLPVVPANMKTVVDEKICTYLAQNGFFYVMHRFDIDNVAFTKDMQSKGLFASISLGVKQPDYETVDRFVADGICPEYITIDIAHGHAESVKNMIAYIKAKIPAAFVIAGNVATPEAVIDLENWGADATKVGVGPGKVCITKLKTGFGTGGWQLSALKWCARVATKPIIADGGIRSHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEVDGQLFKEYYGSASDFNKGEYKHVEGKRILEPVKGPLMNTLVEMQQDVQSSISYAGGTKLMDIRKVNYVILGGDNAGEHLLM
>NC_013446.2|WP_012837215.1|1019548_1020196_-|TetR/AcrR-family-transcriptional-regulator
MRTKTEEKRQAIIDVAAATFGELGFERTSMSEICTRLGGSKATLYNYFPSKEALFLEVMFQASEADFQNTMLALQTGNDDAAQTLCNFGQRFLGLLYSPEVMSVRRLLVSEGGRANIGQRCWDMGPARGNAAINAFLQQGIERRLLRNADTEVMRHHLLALLEAELLPRFMFQHLPAPTAQEIALCTERAVDAFMRVYGTPGDTQGKSDAIRKPL
>NC_013446.2|WP_012837216.1|1020302_1021799_+|efflux-transporter-outer-membrane-subunit
MTQCIAAAPQRIRRGRHGWWVLGLPAVLAACAQIPEWEGKAMLAQPVPETLQAASHAPPMDWPSQQWWQRYGDAQLDQLIAEALEGAPDMAAAAARVLQARAMLGVSEAASAPQLSARASVSEDKLSYNHLTPEAFAPRGMKDYGRATLDLSWSLDLWGKQRAAVAAAAGELAAREADAAQARLLLSSNVALAYAQLLRLAANTQTLEQSVQVRRTTAELFEQRYANGLENQGSVHSARARLAAAQAELAQMQEQVGLQRNSIAALIGAAPDRGAAIVLDAGRLQSPWQQQWALPEQLPAHLLGRRPDVVAARLHAQALESRVASQQAEFYPDVNLSAFVGVQSLGLDMLTRSGSGIASVGPAVSLPIFNGGRLRSQLGAARARYDEAVAQYRSMLNRALQEVADNAVSQRALQHQLTAMQQAVTAATEAHRVARNRYEGGLARYLDVLSAEDQLLASVRQLVDVQSRALTLDIGLHRALGGGWSESAGVQHAALPKA
>NC_013446.2|WP_041743921.1|1021924_1023097_+|HlyD-family-secretion-protein
MTENASSVSANPAVREQRRNRLLAGLAGLVLLGGAGAGAYWWLHASHFVSTDNAYAAAEVAQVTPSIGGTVLEVLVRDTQAVKQGDVLVRIDPTDARLALAQAEAELARATRRVKGYVANDGGLKAQVTAREADEKRAAAQLLAAEADMERATIDLQRRQALAKSGSVSGEELTQAQNAFAAAKAQLASAVAAQAQASANREAAIGAKQVNATLIEGADAQSNPEVQLAQARRDQAQVDLDRSTVRAPVDGVVAKRSVQIGQRVQAGAPLMTVVPVQRIYVDANFKEGQLGKVRVGQRVQLQSDLYGSDVKYSGTVVGFSGGSGSAFAAIPAQNATGNWIKVVQRLPVRIQLDAAELARNPLRVGLSMQVTVDTRSGPADAAGVATTAAQ
>NC_013446.2|WP_167332975.1|1023158_1024685_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MAAGMVPLTGGTLWLAALVLAAANFMAVLDMTVANVSVPSIAGNLGATTSQGTWVITSYAVAEAITVPLTGWLAARFGAVRVFATAMGLFGLASLLCGLANSLGMLVFARILQGLAGGPLMPLSQSLLLRIFPPRMAPAAIGLWSMTTLIAPVLGPIVGGWICDEYTWHWIFLINIPVALVCAFAVWHLVRRYEQPLLKNPIDTVGLVLLIVWVGSLQLMLDEGKNLDWFASPMIVALAVVAVVGFAAFMIWELHAEHPIVDLRVFRHRGFSMAVLTISLAFAAFFAVNVLTPLWLQSFMGYTATLAGLVTAWTGLFALFVAPAAAGLAARVDPRRLIFGGVFWMGVITFWRAFATTDMGYWDIALPLMFMGLGLPFFFIPTTGLALASVEPQEMDNAAGLMNFLRTLSGAAAVSVVNTAWENGTTRKHADLVGLSDASGEVLHGLQQSGMSPDAALSALDQLITSQSVMLATNQIMFIIAGGFVLAACAIWLAPRPSRTVEPGAGGH
>NC_013446.2|WP_012837218.1|1024867_1027351_+|UvrD-helicase-domain-containing-protein
MFPIDLLDSAPDGANSGANPASHSPLLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNKAAKEMLTRLSAMLPYNVRGMWIGTFHGLCNRLLRAHYQAAKLPQAFQILDTQDQLSAIKRLCKQFNVDDERFPPKQLMYFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDDAHLRHHYQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVKNQIKLEQNYRSFSNILDCANALISHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVRNDGFTRQEIAVLYRSNAQSRVIESALFNSKIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDVLREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDAVAMPLDEQQNAPQLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFLVHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHENAMMDRGGLEEERRLAYVAITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEALKWITPRQSGFGSFAPSSGAGGAWGSRGASQFGSGSGWGGKQTEVFASPPVPQQKAEPAHGIKAGIAVFHNKFGEGKVLAVEGSGDDARAQVSFGRHGTKWLALAIAKLTIVD
>NC_013446.2|WP_012837219.1|1027421_1029386_-|DUF839-domain-containing-protein
MAQNLLSRRKALQLFSGAPLLPLGSVVSASSLLAACGGGDNDNTTPTTPPVTKNYVSATFTSMAAPTLTTPANMATMYVASQLKVAFDDKSEQVFDLGYEPYFVTGDMVTDGKGGKILAGGYYDINNQPIMDKSVAGKERHFFSDCPDGSSLLQLDNAKVDGVKGKPVFAVVQFEYANKDQSGKSAYGTLPSPIAVLTLDQDQTTGKLSLVKYHNVDMSKAHGLWITCGASLSPWNTHLSSEEYEPDAFSASNSSMFKAFSKNVFGDETKANPYHYGHLPEITVNPDGTGTVKKHYCLGRISHELIHVMPDNRTALMGDDYTNGGLFMFVADKEKDLSAGTLYVAHYTESLTDTSTAKMEWINLGHATSAEIEALANNTKPTDIMESLTTDPGDASYTKVFLDGSAAWIKLKSGMEKAAAFLETHRYANLMGGSMAFTKMEGTTISIKDKVAYSALANIQTSMIQNDKLWDAKHNVNFPKTVKAGGILEHKLGGSIKDTKGTAINSEWVPTSSHMLMMGEDIAADALGNTAHPDKIASPDNLKFSEKMRTLFIGEDSGNHINNFLWTYNVETKAMSRILSTPAGAESTGLHAVDEINGWTYIQSNFQHPGDWSTLHAKVKDQLDGLINANYKDKFGAAVGYMTAKPTQMTLKAK
>NC_013446.2|WP_003067798.1|1029618_1030449_-|hypothetical-protein
MKLQIVPPGTGLQWVLQGLRTFKSQPLALAALFFLGMASMSLISALPLIGPVIALALLPCISLTMMVAASEAAHGRKPTPALLLVAFRSGSQHLHSMLMLGGLYAAGFLLIIGASSLVDGGTFASVYLGQTPMTRELAEEPEFQSAMWLSMFLYLPLSLAFWHAPALIHWHGISPVKSLFFSFVGCIRNIGAYLVFGVCWIGVFIVSGMALAIVTGILAMLIGSIAGGLMVATALMLAAIFFTSIVFTFRDSFSPPDDDQTLIDSSSGTAPPSSDS

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Crispr_ID: NC_013446_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013446_2

4716690-4716912

Orphan

Consensus_repeat	Method
TCTTGCTGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013446_2

>merge|NC_013446|2|4716690-4716912|CRISPRCasFinder
TCTTGCAGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTTGGCGAAATCGCCCCCCATCGCTGCGCTCGTCTTGCTGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTTGGCGAAATCGCCCCCCATCGCTGCGCTCGTCTTGCTGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTT

>NC_013446|2|2|4716690-4716912|CRISPRCasFinder
TCTTGCAGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTT	GGCGAAATCGCCCCCCATCGCTGCGCTCGTCTTGCTGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTTGGCGAAATCGCCCCCCATCGCTGCGCTCG
TCTTGCTGCCGCAATGTCTGACTTCAGCACTGGCTGAAGTCAGGGTGGCGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013446.2\|WP_039050047.1\|4725785_4726424_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013446.2\|WP_012839884.1\|4706822_4707902_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239608
NC_013446.2\|WP_012839885.1\|4707916_4709275_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NC_013446.2\|WP_012839896.1\|4720874_4723298_-\|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|224170
NC_013446.2\|WP_012839886.1\|4709436_4709916_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013446.2\|WP_012839888.1\|4711182_4711947_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_013446.2\|WP_012839900.1\|4727639_4729139_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NC_013446.2\|WP_012839890.1\|4713913_4714405_-\|hypothetical-protein	unknown	unknown	unknown
NC_013446.2\|WP_003068067.1\|4714617_4715085_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NC_013446.2\|WP_003081301.1\|4726767_4727463_-\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NC_013446.2\|WP_012839889.1\|4712126_4713956_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227590
NC_013446.2\|WP_012839897.1\|4723380_4723824_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NC_013446.2\|WP_012839898.1\|4723911_4725708_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|185635
NC_013446.2\|WP_003068064.1\|4716964_4717759_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NC_013446.2\|WP_012839887.1\|4710023_4711100_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NC_013446.2\|WP_012839894.1\|4718676_4719642_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|227099
NC_013446.2\|WP_012839895.1\|4719656_4720853_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|181626
NC_013446.2\|WP_012839891.1\|4715152_4715791_-\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NC_013446.2\|WP_051517702.1\|4716032_4716545_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|183276
NC_013446.2\|WP_012839893.1\|4717805_4718639_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298

Protein	Function_ID	Function_description	E-value
NC_013446.2\|WP_039050047.1\|4725785_4726424_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.19634e-07
NC_013446.2\|WP_012839884.1\|4706822_4707902_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239608	cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid).	9.62596e-66
NC_013446.2\|WP_012839885.1\|4707916_4709275_-\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.29276e-100
NC_013446.2\|WP_012839886.1\|4709436_4709916_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.48945e-15
NC_013446.2\|WP_012839888.1\|4711182_4711947_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.55858e-34
NC_013446.2\|WP_012839900.1\|4727639_4729139_-\|sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	4.0777e-52
NC_013446.2\|WP_012839895.1\|4719656_4720853_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|181626	PRK09052, PRK09052, acetyl-CoA C-acyltransferase.	0
NC_013446.2\|WP_012839889.1\|4712126_4713956_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227590	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones].	0
NC_013446.2\|WP_003068067.1\|4714617_4715085_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.59293e-44
NC_013446.2\|WP_003081301.1\|4726767_4727463_-\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.07351e-107
NC_013446.2\|WP_012839893.1\|4717805_4718639_-\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	6.61106e-50
NC_013446.2\|WP_012839898.1\|4723911_4725708_-\|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
NC_013446.2\|WP_003068064.1\|4716964_4717759_-\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	4.20368e-128
NC_013446.2\|WP_012839887.1\|4710023_4711100_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	4.28793e-76
NC_013446.2\|WP_012839894.1\|4718676_4719642_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	1.88421e-40
NC_013446.2\|WP_012839896.1\|4720874_4723298_-\|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|224170	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].	5.31552e-78
NC_013446.2\|WP_012839891.1\|4715152_4715791_-\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	4.14398e-19
NC_013446.2\|WP_051517702.1\|4716032_4716545_-\|thioesterase-family-protein	gnl\|CDD\|183276	PRK11688, PRK11688, thioesterase family protein.	9.76739e-80
NC_013446.2\|WP_012839897.1\|4723380_4723824_-\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.92874e-33

>NC_013446.2|WP_051517702.1|4716032_4716545_-|thioesterase-family-protein
MTSRSVSSRHSAQEIAESVQFEPEFISGLREIFETRVAFNQTIGLKIGEITPTLVQGHIAMRPDLIGHSAYQRIHGGVISAGLDSMGGLAVMAAIAAKHMDDTPAQRLHRFSRLGTIDLRVDYMRPGIGKEFLLTARVLRLGSRVANTQMEFLSVDGELLSTGTAAYIVS
>NC_013446.2|WP_012839891.1|4715152_4715791_-|polymer-forming-cytoskeletal-protein
MAVQNPFFGKRDNDNFPSRSSVTGLSTANTAATSGASSLSNAGLGTAPSSPMRAAATAAPTAPVAEENGGSKLTVGPNIKLKGVEITDCDTLVVEGTVEATMNSRVIKIAEQGAFHGTAEIDIAEIHGKFDGTLTVREKLVIYGSGKVSGTIRYGKVVIEEGGELTGQIEAGTRSGTSSSSNASAWSKSSAGSSTATAAASSSETTGSAAVA
>NC_013446.2|WP_003068067.1|4714617_4715085_+|acyl-CoA-thioesterase
MPPRSPDLPSVALPADKELVLKVVPMPADVNANGDIFGGWVMAQVDLAGSVLPQRISHTRMVTVAVNEFIFKQPVRVGDILSFYAGVQHVGRTSVAVDVEVFAERFSDQGKYVKVTEARLTYVAIDATGKPQSLPDTEQTRAWREKLQAQAAAKS
>NC_013446.2|WP_012839890.1|4713913_4714405_-|hypothetical-protein
MTSARSLKPPVQAVQPSCHPEPLTGAAALAGPFTELSPRQALQAGALNARVCWAGGLRSIEAVGEQRDCMVLLHAEFSEQGFLSWPREASFFKACGAGPYDRQLLQPFTLVWVSAKVTGQAEFAGTPIPVIEIDALYRGSDCQQGDTAPQCVHSYLQPQKKPQ
>NC_013446.2|WP_012839889.1|4712126_4713956_-|ABC-transporter-ATP-binding-protein/permease
MRSQLPATPEEAAVAANQSDGATLRRLFPYIWRYKWHALAALAFMICAKLANVGVPILLKHLVDALDIKPGQAQAVLVVPVGLLAAYGLLRFSSTMFTELRDLVFSKATQGASRSIALSTFEHLHALSLRFHLERQTGGMTRDIERGVRSTESLISYSLYSILPTLIEMALVLGILAVRFDIWFAVITLAALVFYIGFTVTVTEWRTRFRKEANAQESAAHTKAIDSLLNYETVKYFNNEQFESARYDENLENLRRVRLKSQTTLSMLNCGQQLIIGAALVAILWRATQGVVDGRLTLGDLVMINAFMIQLYIPLNFLGVIYREIKQSLTDLNRMFTLMDKEREVADAPGAQSLQIDNPPPEVRFENVQFAYDSARPILHDVSFTIPAGKTVAVVGPSGSGKSTLARLLFRFYDVQGGHVRIAGQDIRTVTQSSVRHCVGIVPQDTVLFNDTVAYNIAYGQPGATQEQVVAAAKAARIHDFIERTPQGYATRVGERGLKLSGGEKQRVAIARTLLKNPPILIFDEATSALDSANERAIQNELRSAAQGKTSLVIAHRLSTVVEAHEILVMDSGRIIERGTHEELLAAGGRYSSMWNMQLNQQESSEIPA
>NC_013446.2|WP_012839888.1|4711182_4711947_-|GntR-family-transcriptional-regulator
MPPSIATAAAAEENHSQVVKAQLQLREMILAGEMAAGERISELVLAERLGISRTPIRAALMRLEQEGMLEATSGGRGYKVRVLSEADVSDAIELRGTLEGLAARMAAERGVDEALLARAARCLDAIDRVLDAQNWGDEAFSAYVALNSEFHDILLEMSGSSFMQRELERVKRLPFASPSGFVVADSESPRALRSLILAQEQHREVIDAIEHREGARAEALMKEHSRIARRNLREAMRSPETTRVPGAQLIRASR
>NC_013446.2|WP_012839887.1|4710023_4711100_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MSKQAQPTYPRNTWYVAATAAEVTDKPLGRQICGERMVFYRALEGKMAAVEDFCPHRGAPLSLGRVCEGKLVCGYHGLEMGCDGKTVAMPGQRVRGFPAIKSYPVEERYGFVWVWPGDKDAADAALIPDLQWHDNPEWAYDGGLFHIKADYRLMIDNLMDLTHETYVHASSIGQAEIDETPCKTEVLGDSEVVTSRFMENIEAPPFWKMALRSNGLADDVPVDRWQVCRFTPPSHVLIEVGVAHAGKGGYDAADEHKVYSMVVDFITPETDGSMWYFWGMARKFNPGDASVTAAIKQGQHKIFSEDLEMLELQQRNLEDYPQRQLLKLNIDAGGVQSRKIIERLIDEEKSESCVEALA
>NC_013446.2|WP_012839886.1|4709436_4709916_-|MarR-family-transcriptional-regulator
MESPTTPNPLSLDLYDQPGHLIRRAQQIAALLFREVLGPDVTPVQYAILRMLQESPGIDQVTLARLVALDNSTTADIAARLESKGWIHRELLPRRQRRLSLTTEGEAMLAAFVPNVYELQQRMLSALEPEEQTEFKRLLRKFVQLHDSTEAGEQAAING
>NC_013446.2|WP_012839885.1|4707916_4709275_-|MFS-transporter
MEQDLRAHLDQRPMTTFQWSVIAVCMALNMIDGFDVLVMAFTASAVSGHWKLSGSELGFLLSAGLFGMAAGSLLLAPMADKLGRRPLILLCLAVSGLGMLASAWSQTPTQLAVLRVITGLGVGGILACSNVIASEYASLRWRSLAVTLQSTGYALGATIGGSIAVWLLAHHGWRSVFLFGGCSTLAVLVLAWFALPESLDFLLVKRPANALQRLNGLIRKMGLPALGSLPQAVAAGSGEGKRMGPLQLLSPRLLRPTLLVWLSFFSVMFGFYFVMSWTPKLLAASGLTPEQGVTTGVLLSLGGILGATLLGLLAARFAIHRALAVFMLVTAVLLCFLVGSSGALWMSYTLAFLIGVFVNACVAGLYAIAPVVYGSDVRATGVGWGIGIGRIGAIVSPLVAGGLLDAAWSPDQLYLGYGLAFVLAAVIVSMHRIAGPQAAHRRAASETVAAAH
>NC_013446.2|WP_012839884.1|4706822_4707902_-|Rieske-2Fe-2S-domain-containing-protein
MNQISQPTSAALPAFPLDQWYVAGFAWELKDQPVARTLLGQPVVLFRTEDGRVAALEDRCCHRELPLSCGTVEAAGLRCGYHGLLFSHEGRCLEIPGQERIPAKACVKSFELRERDQILWIWMGATPDSVPGTEPPAYAVHSDPQYRFGGGVYHYDAPYQLIHDNLLDLSHLGYVHLKTIGGNARVHMNADLKVSQDGDSVKVVRWMPDSDPPPTYAQAWPFQGRIDRWQEVEFHPSHVRIWTGAMDAGQDRLDNPAREGFHMRGFHGVTPETETSAHYFWTIATNPHPQMQDTTQLVIDQTAATFEEDKVVIEAQFRNQQRFGSRAVVDIHVDVGPNRARRVIERLRQAGAQASQALA
>NC_013446.2|WP_003068064.1|4716964_4717759_-|enoyl-CoA-hydratase
MSNTQDSQDILVHTEEGVCTITFNRAAKKNSFTEAMYTQMADALAAAKVDAGVRVVVFQGDIAIFSAGNDIADFLKQASTPGAMGADAPVWRFLQEVSAFPKPLIAAVCGPAVGIGTTLLLHCDLVYAGDNAAFSLPFINLGVCPEAASSLLLPQMLGYHRAAEALLLGEPFMAEAALEVGLINRVVPPSECNAVAQAQARKLARKPLSSLIETKRLMKGGQAKAVGERIVEEGAVFARMLREPAAKEALTAFMEKRHPDFSQC
>NC_013446.2|WP_012839893.1|4717805_4718639_-|thioesterase-family-protein
MSTDLHPFDRAVALSATGVPNQYQGTASPDYWNMVGPYGGITAASLVQAIQQHPQCLGDPLSITVNYAAAVGPGTFEIDANPVRTNRSTQHWLLTITQPDAEGQPQVVTTATAVTAVRRQTWSVSDMPMPEVRAAAEVERVPPLFKASEWLTRYEMRFVDGILPREEDGAERDSLTRLWVRDNPPRPLDFASLAAVSDVFFPRAWLRRAKRVPAGTVSITVYFHAGREELAEAGDGLLLAQARGQEFRNGFFDQTAQLWSQSGQMLATSHQIVYYKE
>NC_013446.2|WP_012839894.1|4718676_4719642_-|alpha/beta-fold-hydrolase
MQTAQSQASVQAPVQAAVQWTEMALPISVGSAHLVLRQCQPRAAAPLAQVVVAGAMGVQQSYYQAFARWLAEQGYGVTTFDYRGHGLSLQVPLRDARADLLDWAKDCELVAAHLKQQFPEQPLIWIGHSVGSQLPGLASIPLPINGLLSVGSGSGYWRDNAAPTKRMVRLFWWGVAPLVTALYGAFPGRKLGIVGDLPAGVIWQWRRWCLNPLYAMGAEGRWAAEAYAAAHYPLHALYFEDDEMMSLASVQSLVDWYKSAPSTLERVDPGLAPSGRIGHLGYFKEEMRELLWQPLLPLLQSWRDGDRGPGKPLFGPLESPV
>NC_013446.2|WP_012839895.1|4719656_4720853_-|acetyl-CoA-C-acyltransferase
MKQVQDAYIVAATRTPIGRSHKGFFRNYRPDDLLATTLKAALAQVPGLDPKAIEDIVCGCAIPEAQQGLNVARIGAVLAGLPTSIGGITVNRFCASGLSAVAMAADRIRVGEADVMVAAGVESMSMVPMMGNAPSLSPSIFERDSDVGIAYGMGLTAEKVAQQWKVSREAQDAFALESHRRAIAAQQAGDFAAEITPIEVTDRTLNIATGETVASTRTVSLDEGPRPDSSLEGLAKLRTVFAARGTVTAGNSSQTSDGAGALILASGDAVKRFGLTPLARFVSYASKGVPPAIMGIGPIEAIPAALRYAGLKQDDIDWYELNEAFAAQSLAVINTLGLDQSKVNPMGGAIALGHPLGATGAIRAATVVHALQRKQLKYGMVTMCVGMGQGAAGIFERV
>NC_013446.2|WP_012839896.1|4720874_4723298_-|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein
MSRFNVKKVAVLGAGVMGAQIAAHLVNVKVPVILFDLPAKEGPKSGIAERAIANLKKLKPSPIGVAEDVELIQPANYEEHMKLLKGCDLVIEAIAERMDWKLDLYHKIAPFVAKHALLASNTSGLSITKLSEALPDAIKPRFCGIHFFNPPRYMQLVELINTPTTQAEVLDQLEAFVTSTLGKGVVRAHDTPNFIANRIGIAGMLSTMKEVENFSLSFDVVDDLTGKKLGRASSGTFRTADVVGLDTMAHVVKTLQDNLSLETDPFYGSFGTPPVLAKLIELGNLGQKTKKGFYKKVGRDIFQFELDSEDYIPAGGKADEVYGRMLKKPAAERLKLLRNAEGKEGQFLWAILRNSFHYAAVHLQSIADCARDVDQAMRWGFGMKQGPFELWQEAGWLEVAKMVQEDIDAGKALCKAPLPQWVFEGPVAEAGGVHTGNGSWSPAQNQFVPRRVLPVYERQLFPEKLLGETDLPDWQTAGTTIAETRALRTWTLDEDDSPSGKRVLIASIKNKMHAISPEVMEGLMEAVDTAESDFDAMVIWSGDAPFSVGADLEATMPAFVIGGADAIESIEQELQNLMLRLRYAQVPVVSAIHGLALGGGCEMAVYSARRVAHMESYIGLVEVGVGLVPGAGGLTYIARRAAENAATSTGKDLLPFLTEGFTAAAMAKVGTSALESRKLGYLLDSDIVVAHKDEVLFVAINEAKAMAASGWRAPHKRSFPVAGRSGQATIKGSLVNMRDGGFISEFDQHIAGLIANVVCGGDVDAGTLVDEAYLMSLERKAFCHLIAHPKTHERILGMLNTGKPVRN
>NC_013446.2|WP_012839897.1|4723380_4723824_-|DUF2147-domain-containing-protein
MKKIKAVAALVLIAGSMSAAWAQMSPVGTWRSMDEKENTPKAQVKITEAGGVVTGKVEALLRKGADPNALCTECKEELKDKPVVGMTLISGVKKVEGKDVWEGGRILDPENGKTYTVRLTPVDAGQKLEVRGSIGPFWRTQTWIRVQ
>NC_013446.2|WP_012839898.1|4723911_4725708_-|acyl-CoA-dehydrogenase-C-terminal-domain-containing-protein
MPSYNPPLRDMQFLMHEVFKVTETYQQIPKYAEVDADTINAVVEEAGKFAANVTFPLNISGDEEGCTLNKETHEVTTPKGFKQAYAQFIEGGWPALSCDPEYGGQGLPFVLNSALYEMLNSANQAWTMYPGLSHGAYEALHAYGTPEQKKTYLGKLTSGEWTGTMCLTEPHCGTDLGLLRTKAEPLADGSYRVTGNKIFISAGEHDFTSNIVHLVLARLPDAPVGSKGISLFVVPKFKVKADGSLGERNPIFCGALEHKMGIHGNATAQINIDGAIGTLVGEPNKGLQAMFVMMNAARLGVGNQSLGLTEVAYQNALAYAKDRLQMRSLSGVKAKDKPADPIIVHPDVRRMLLTAKAYAEGGRALSTFCGLLLDKELHHPDEKVRKDSGELVALLTPIVKAFITDNGWTATMLSQQVFGGHGFIKEWGMEQFVRDARINMIYEGTNGIQALDLLGRKILGNQGATLKKFGKLIAQLVEEEGVNEKMSEFITPIAVLGEQMTKFTTEIGFKGMQNPDEVGAAAVDYLRVAGHLVFGYLFARMAQVALREIAAGNADPFYLGKLQTARFYFAKLFPETATLMRTARAGSQSLMDSDAALA
>NC_013446.2|WP_039050047.1|4725785_4726424_-|TetR-family-transcriptional-regulator
MEGAATKSAGRSLAKGQQTKATIVEAALNLATHIGLEGLSIGAIAELTGMSKSGVFAHFGSREELQISVVHEYHDRFEQEVFYPAIEAPRGIPRLRALFGNWMKRTSIEIDSGCIYISGAVEFDDRTGPVRDALAESVGTWLAAMRRTIVQSQECGDLRADADASQLLFEIHGLILALHYEARFLHSEGSIERAHAGFNNILARYASQPPAA
>NC_013446.2|WP_003081301.1|4726767_4727463_-|nucleoid-occlusion-factor-SlmA
MSESEVLSPVSNIENPAEDSPAAPAMAPARKRPKPGERREQILQALASMLEKPGADRITTAALAAHLSVSEAALYRHFASKAQMFEGLIEFIEQSVFTLVQQIVGRDVPEAAHDPVTSVRNANRVVALLLQFGEKNPGMVRVMVGDAIVFEHERLQTRMNQFFDRIESTLRQCLRPAAGAMGSAAPTAEASVAASVLTSFALGRLQRYARSGFRRLPTEHLDASLAMMVVV
>NC_013446.2|WP_012839900.1|4727639_4729139_-|sensor-histidine-kinase
MTANLRFRLLVLLLVPLMLLAAMGGWFSYSAADEASTQHDQRLLRLLPALADSVLAPSIADGTPPLVSLTPSVEDFLRNQGDEAGYAVGDLQGNVVAGDTWINFDVPATGTAEFHSQEHDGVTYRVAVLKAETYGAGEMVVMLADSSDVRQQWVRQLLMHVLLPNLLLIAGAAVAIYWSVSRAFKPLHKLTQAVERRSPRDLSPIDEQTSPAEVRPLVRSLNRLFSLVNAQAEGQRRFVADAAHQLRTPLAALQTQVEAWALSGQEARRLAKRTGEQAQVVLTVEQIEQLRDATRRTSQLARQLLALSRADARNAEVQPLQEVDLKELCESMLETFIDRASIKHLDFGLEVEPASVWGHSWLLRELVSNLVENAIKYTPRGGSVTLRCGLRPRPVGTDDATLLQIAGVQQWAFVEVDDDGPGVPEEERSQITQRFYRAQGVIEEGTGLGLAIADEITQLHQGVLSFSDGSFGKGLLVRLEIPVQSVSEGSHEVSEALKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1666325 : 1708020

Stenotrophomonas_phage(28.57%)

integrase,transposase

attL 1687623:1687639|attR 1705793:1705809

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012837638.1\|1666325_1667576_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.8e-90	44.1
WP_123974922.1\|1669308_1669491_-	hypothetical protein	NA	NA	NA	NA
WP_019043395.1\|1669668_1669806_+	hypothetical protein	NA	NA	NA	NA
WP_012837641.1\|1670058_1670709_-	hypothetical protein	NA	NA	NA	NA
WP_012837642.1\|1671014_1672139_-	porin	NA	NA	NA	NA
WP_122974738.1\|1672262_1672577_-	hypothetical protein	NA	NA	NA	NA
WP_012837644.1\|1672589_1673564_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_034358988.1\|1673906_1674659_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.7e-21	43.7
WP_012837647.1\|1675768_1676263_-	hemerythrin	NA	NA	NA	NA
WP_012837648.1\|1676328_1677291_-	oxidoreductase	NA	NA	NA	NA
WP_012837649.1\|1677568_1678912_+	MFS transporter	NA	NA	NA	NA
WP_012837650.1\|1678955_1679948_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012837651.1\|1680238_1680832_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_029158425.1\|1680893_1682069_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012837653.1\|1682088_1683420_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012837654.1\|1684362_1685901_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-45	36.7
WP_050881040.1\|1686199_1687222_-\|transposase	IS110 family transposase	NA	NA	NA	NA
1687623:1687639	attL	NA	NA	NA	NA
WP_012837656.1\|1687692_1688460_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012837657.1\|1688569_1689538_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_012837658.1\|1689553_1690795_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012837659.1\|1690791_1691256_+	Terephthalate 1 2-dioxygenase terminal oxygenase component subunit beta 1	NA	NA	NA	NA
WP_034410981.1\|1691252_1692200_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_012837661.1\|1692209_1693220_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A1D8KRZ3	Synechococcus_phage	1.2e-06	36.4
WP_012837662.1\|1693240_1693819_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_123974928.1\|1695004_1695748_-	hypothetical protein	NA	NA	NA	NA
WP_080571293.1\|1695828_1696152_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012837667.1\|1696270_1697344_-	hypothetical protein	NA	NA	NA	NA
WP_012837668.1\|1697429_1698467_-	YqaJ viral recombinase family protein	A6XMH8	Bacillus_virus	3.8e-53	40.3
WP_012837669.1\|1698602_1699586_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	7.8e-56	40.3
WP_080571292.1\|1699797_1700163_-	hypothetical protein	NA	NA	NA	NA
WP_034358079.1\|1700827_1701070_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_080692911.1\|1701223_1702441_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_012837672.1\|1702437_1703808_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_012837673.1\|1703981_1704902_-	hypothetical protein	NA	NA	NA	NA
WP_041743983.1\|1705670_1705856_+	hypothetical protein	NA	NA	NA	NA
1705793:1705809	attR	NA	NA	NA	NA
WP_013521161.1\|1707693_1708020_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	2.1e-26	63.1

DBSCAN-SWA_2

2189416 : 2249233

Lactococcus_phage(28.57%)

integrase,transposase

attL 2246657:2246674|attR 2252023:2252040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012838037.1\|2189416_2190040_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	7.5e-12	33.7
WP_012838594.1\|2190801_2191587_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.4e-31	33.6
WP_012838039.1\|2191576_2193103_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_167332953.1\|2193479_2193854_-	helix-turn-helix domain-containing protein	E5E3P4	Burkholderia_phage	2.6e-12	40.2
WP_167332954.1\|2194388_2195546_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012838042.1\|2195542_2197159_+	hypothetical protein	NA	NA	NA	NA
WP_012838043.1\|2197151_2199023_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012838044.1\|2199000_2199441_+	hypothetical protein	NA	NA	NA	NA
WP_003062966.1\|2199530_2200025_+	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_012838045.1\|2200039_2200369_+	hypothetical protein	NA	NA	NA	NA
WP_012838046.1\|2200370_2201291_-	HTH-type transcriptional regulator ArgP	NA	NA	NA	NA
WP_012838047.1\|2201382_2202033_+	LysE family transporter	NA	NA	NA	NA
WP_003062961.1\|2202091_2202400_-	hypothetical protein	NA	NA	NA	NA
WP_012838048.1\|2202564_2203041_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_041744049.1\|2203129_2204029_+	EamA family transporter	NA	NA	NA	NA
WP_003062956.1\|2204493_2206416_+	PrkA family serine protein kinase	NA	NA	NA	NA
WP_012838050.1\|2206492_2207761_+	YeaH/YhbH family protein	A0A219UQP6	Bacillus_phage	1.0e-07	36.0
WP_003062951.1\|2207757_2209392_+	SpoVR family protein	NA	NA	NA	NA
WP_003055852.1\|2209634_2210420_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012838051.1\|2210587_2210827_+	DUF3820 family protein	NA	NA	NA	NA
WP_012838052.1\|2211053_2212883_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.9e-18	36.2
WP_041744050.1\|2213278_2213785_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012838054.1\|2213790_2214744_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_041744504.1\|2214853_2217295_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012838056.1\|2217533_2218901_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_041744051.1\|2219019_2221422_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_041744052.1\|2221586_2221877_+	DUF3649 domain-containing protein	NA	NA	NA	NA
WP_041744053.1\|2221879_2223550_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_012838060.1\|2223546_2223891_+	DUF3325 domain-containing protein	NA	NA	NA	NA
WP_041744054.1\|2224233_2224755_-	hypothetical protein	NA	NA	NA	NA
WP_012838062.1\|2225069_2225627_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003070298.1\|2225770_2226484_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_041744055.1\|2226640_2227663_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_012838064.1\|2227830_2228502_-	hypothetical protein	NA	NA	NA	NA
WP_012838065.1\|2228592_2232084_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_123974964.1\|2232330_2233128_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_041744056.1\|2233250_2233733_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_012838068.1\|2233767_2234163_-	GFA family protein	NA	NA	NA	NA
WP_012838069.1\|2234223_2235726_-	sensor histidine kinase	NA	NA	NA	NA
WP_003055820.1\|2235914_2236646_-	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	2.5e-30	37.9
WP_041744057.1\|2236959_2237709_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_039048727.1\|2237853_2238636_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_012838072.1\|2238712_2239729_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003070275.1\|2239725_2241957_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
WP_012838073.1\|2242781_2244308_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_012838594.1\|2244297_2245083_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.4e-31	33.6
WP_012838074.1\|2245590_2246064_-	hypothetical protein	NA	NA	NA	NA
2246657:2246674	attL	NA	NA	NA	NA
WP_012838075.1\|2247044_2247662_+	DNA-binding protein	NA	NA	NA	NA
WP_012838076.1\|2247658_2249233_+\|integrase	site-specific integrase	NA	NA	NA	NA
2252023:2252040	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2776505 : 2851855

Moraxella_phage(20.0%)

integrase,transposase

attL 2780069:2780083|attR 2785847:2785861

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123974978.1\|2776505_2777219_+\|integrase	integrase	NA	NA	NA	NA
WP_012838474.1\|2777488_2778100_+	hypothetical protein	NA	NA	NA	NA
WP_012836612.1\|2778892_2779825_+\|transposase	IS5-like element ISAav2 family transposase	NA	NA	NA	NA
WP_012838475.1\|2779827_2780895_-	hypothetical protein	NA	NA	NA	NA
2780069:2780083	attL	NA	NA	NA	NA
WP_012838476.1\|2782363_2782825_+	hypothetical protein	NA	NA	NA	NA
WP_012838477.1\|2783584_2784082_-	hypothetical protein	NA	NA	NA	NA
WP_123974980.1\|2784160_2784541_-	hypothetical protein	A0A0S2SY43	Pseudomonas_phage	4.9e-06	38.5
WP_012838479.1\|2784724_2785726_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	6.9e-68	43.9
WP_012838480.1\|2786250_2787039_-	recombination protein NinG	NA	NA	NA	NA
2785847:2785861	attR	NA	NA	NA	NA
WP_012838481.1\|2787301_2788552_-	ATP-binding protein	NA	NA	NA	NA
WP_041744136.1\|2789114_2789321_-	hypothetical protein	NA	NA	NA	NA
WP_012838482.1\|2789448_2789850_-	hypothetical protein	NA	NA	NA	NA
WP_167332982.1\|2789851_2792155_-	hemagglutinin repeat-containing protein	NA	NA	NA	NA
WP_012838484.1\|2793284_2801174_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	2.0e-40	32.6
WP_041744138.1\|2801183_2802905_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	A0A0R6PI85	Moraxella_phage	3.7e-37	28.0
WP_012838486.1\|2803612_2804149_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_003064031.1\|2804863_2805082_-	hypothetical protein	NA	NA	NA	NA
WP_012838487.1\|2805366_2805549_+	hypothetical protein	NA	NA	NA	NA
WP_012838488.1\|2805751_2806504_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	4.6e-08	26.5
WP_123974982.1\|2806678_2806858_-	hypothetical protein	NA	NA	NA	NA
WP_012838489.1\|2807337_2807646_-	hypothetical protein	NA	NA	NA	NA
WP_039051208.1\|2809120_2809372_+	hypothetical protein	NA	NA	NA	NA
WP_012838491.1\|2809619_2810357_-	siderophore-interacting protein	NA	NA	NA	NA
WP_041744139.1\|2810349_2810586_-	hypothetical protein	NA	NA	NA	NA
WP_167332958.1\|2810672_2811302_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_012838493.1\|2811414_2812932_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_080692998.1\|2812943_2814917_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	7.6e-10	31.5
WP_034398669.1\|2815220_2815580_-	DUF2946 family protein	NA	NA	NA	NA
WP_051517661.1\|2815847_2816348_-	hypothetical protein	NA	NA	NA	NA
WP_012838594.1\|2816452_2817238_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.4e-31	33.6
WP_012838496.1\|2817227_2818754_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_012838500.1\|2820797_2821217_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_185950045.1\|2821403_2824331_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-148	42.8
WP_041744141.1\|2824320_2824827_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_003055168.1\|2824914_2825718_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_041744142.1\|2825948_2827898_+	cytochrome c/FTR1 family iron permease	NA	NA	NA	NA
WP_115597153.1\|2828247_2828463_-	copper-binding protein	NA	NA	NA	NA
WP_080692934.1\|2828781_2830425_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_003079124.1\|2830616_2830964_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_003055034.1\|2831164_2834338_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_034349613.1\|2834351_2835701_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012838505.1\|2835723_2837001_-	TolC family protein	NA	NA	NA	NA
WP_003062499.1\|2837176_2837869_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	1.9e-32	35.6
WP_003062497.1\|2837865_2839260_+	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_087083413.1\|2839463_2841002_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	9.4e-48	37.2
WP_012838508.1\|2844015_2844417_-	diacylglycerol kinase	NA	NA	NA	NA
WP_003069798.1\|2844385_2845120_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_003069800.1\|2845268_2845652_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_080554244.1\|2845834_2846107_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_003075108.1\|2848468_2848915_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003075109.1\|2848981_2849383_-	CzcE family metal-binding protein	NA	NA	NA	NA
WP_012838511.1\|2850396_2851395_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_012838512.1\|2851354_2851855_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2868696 : 2881851

uncultured_Caudovirales_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012838524.1\|2868696_2871162_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.3e-85	35.5
WP_012839066.1\|2871285_2871609_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012838526.1\|2871655_2872162_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.0e-24	41.2
WP_012838527.1\|2872284_2873574_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.7e-173	76.8
WP_012838528.1\|2873599_2874031_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	5.4e-54	75.0
WP_011518937.1\|2875551_2876415_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.9e-61	44.1
WP_011518938.1\|2876429_2877908_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.8e-206	77.0
WP_003124096.1\|2878321_2878882_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.1e-50	88.6
WP_001138070.1\|2878884_2881851_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9

DBSCAN-SWA_5

3016721 : 3034475

EBPR_podovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123975110.1\|3016721_3018347_-	hypothetical protein	I6NV36	Burkholderia_virus	6.8e-81	42.5
WP_080692946.1\|3018964_3020377_-	hypothetical protein	F8TUP1	EBPR_podovirus	1.3e-99	62.4
WP_012838658.1\|3020328_3020898_-	hypothetical protein	F8TUP1	EBPR_podovirus	4.3e-30	43.8
WP_051517670.1\|3020887_3021550_-	hypothetical protein	L7TIB4	Pseudomonas_virus	1.5e-10	42.9
WP_167332960.1\|3022207_3022555_+	hypothetical protein	NA	NA	NA	NA
WP_012838662.1\|3022629_3023235_-	glycoside hydrolase family protein	F8UBR8	Escherichia_phage	1.2e-11	37.0
WP_012838663.1\|3023237_3023540_-	hypothetical protein	NA	NA	NA	NA
WP_012838664.1\|3023690_3034475_-	PLxRFG domain-containing protein	L7TID4	Pseudomonas_virus	0.0e+00	41.5

DBSCAN-SWA_6

3150963 : 3156520

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041744187.1\|3150963_3151830_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.6e-68	48.3
WP_041744188.1\|3151862_3153035_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	2.4e-112	54.0
WP_012838751.1\|3153039_3153597_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.2e-50	58.2
WP_012838752.1\|3153593_3154484_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-100	60.3
WP_012838753.1\|3154547_3155453_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-22	32.6
WP_012838754.1\|3155449_3156520_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.4e-88	48.8

DBSCAN-SWA_7

4015275 : 4028301

uncultured_Caudovirales_phage(25.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_185950025.1\|4015275_4015689_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.8e-28	46.9
WP_012839379.1\|4015695_4016994_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	6.8e-92	43.6
WP_012839380.1\|4017006_4018008_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_167332968.1\|4018221_4018461_-	hypothetical protein	NA	NA	NA	NA
WP_012839382.1\|4018656_4019127_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	7.6e-33	53.1
WP_012839383.1\|4019123_4019420_-	hypothetical protein	NA	NA	NA	NA
WP_012839384.1\|4019480_4020227_-	LamG domain-containing protein	Q5DN17	Alphaproteobacteria_virus	4.1e-25	35.6
WP_012839385.1\|4020223_4020973_-	hypothetical protein	F5B3P3	Synechococcus_phage	2.6e-19	56.9
WP_012839386.1\|4020969_4023687_-	hypothetical protein	A0A1W6DWX7	Sphingobium_phage	7.8e-21	34.3
WP_012839387.1\|4023689_4024112_-	C40 family peptidase	NA	NA	NA	NA
WP_012839388.1\|4024108_4024993_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	2.2e-41	38.4
WP_012839389.1\|4024989_4025595_-	DUF2460 domain-containing protein	NA	NA	NA	NA
WP_051517689.1\|4025598_4028301_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	2.7e-90	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013446

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection