CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017355	Helicobacter pylori v225d, complete sequence	3 crisprs	cas2,csx1,DEDDh	0	0	0	0
NC_017383	Helicobacter pylori v225d plasmid pHPv225d, complete sequence	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_017355

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CRISPR-Cas detection and classification

Crispr_ID: NC_017355_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017355_1

334603-334712

Orphan

Consensus_repeat	Method
GAGAGGCTCTCTAGCGTTACTGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017355_1

>merge|NC_017355|1|334603-334712|CRISPRCasFinder
GAGAGGCTCTCTAGCGTTACTGAAGAAATCATCGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAACCCCAGAGGATACGCATGAGAGGCTCTCTAGCGTTACTGAAGA

>NC_017355|1|1|334603-334712|CRISPRCasFinder
GAGAGGCTCTCTAGCGTTACTGAAGA	AATCATCGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAACCCCAGAGGATACGCAT
GAGAGGCTCTCTAGCGTTACTGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017355.1\|WP_000829952.1\|342473_343136_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
NC_017355.1\|WP_001168215.1\|328599_329382_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NC_017355.1\|WP_000833971.1\|327664_328603_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NC_017355.1\|WP_000810796.1\|339038_340589_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NC_017355.1\|WP_000488081.1\|336150_336936_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000841141.1\|331693_332494_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NC_017355.1\|WP_041169201.1\|335181_335448_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000201852.1\|344901_345933_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NC_017355.1\|WP_079991743.1\|326299_327193_+\|CMP-N-acetylneuraminic-acid-synthetase	unknown	unknown	gnl\|CDD\|226488
NC_017355.1\|WP_000742585.1\|327189_327732_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NC_017355.1\|WP_000699914.1\|333884_334223_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000051411.1\|331448_331682_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NC_017355.1\|WP_000599160.1\|332490_332895_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_017355.1\|WP_001117122.1\|338157_339039_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_017355.1\|WP_000056250.1\|345919_346696_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NC_017355.1\|WP_001207779.1\|329629_330622_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NC_017355.1\|WP_000364759.1\|343179_344883_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NC_017355.1\|WP_001019042.1\|330645_331452_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NC_017355.1\|WP_000373232.1\|340597_342214_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_017355.1\|WP_000426611.1\|336925_338113_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017355.1\|WP_000829952.1\|342473_343136_+\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.89209e-14
NC_017355.1\|WP_001168215.1\|328599_329382_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	1.41501e-122
NC_017355.1\|WP_000810796.1\|339038_340589_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017355.1\|WP_001117122.1\|338157_339039_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	7.00754e-65
NC_017355.1\|WP_000841141.1\|331693_332494_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	7.41511e-95
NC_017355.1\|WP_000201852.1\|344901_345933_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	6.69256e-165
NC_017355.1\|WP_079991743.1\|326299_327193_+\|CMP-N-acetylneuraminic-acid-synthetase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	5.32082e-100
NC_017355.1\|WP_000742585.1\|327189_327732_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	2.45549e-60
NC_017355.1\|WP_000051411.1\|331448_331682_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	5.17489e-25
NC_017355.1\|WP_000599160.1\|332490_332895_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	3.64711e-37
NC_017355.1\|WP_000056250.1\|345919_346696_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	4.66051e-65
NC_017355.1\|WP_001207779.1\|329629_330622_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	2.01772e-178
NC_017355.1\|WP_000364759.1\|343179_344883_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0
NC_017355.1\|WP_001019042.1\|330645_331452_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	5.79003e-149
NC_017355.1\|WP_000373232.1\|340597_342214_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_017355.1\|WP_000833971.1\|327664_328603_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	3.26489e-89

>NC_017355.1|WP_000699914.1|333884_334223_+|hypothetical-protein
MKIMHQVMDFLDSCKQTIQKNSNEALQKTKRAFFKEKSQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEKKRLLEQICAKESEENQEKSVKHFKEVWERGDNEQER
>NC_017355.1|WP_000599160.1|332490_332895_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR
>NC_017355.1|WP_000841141.1|331693_332494_+|DNA-protecting-protein-DprA
MKSNFQYSVLENIPKAFDILKDPPKKLYCVGDTKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NC_017355.1|WP_000051411.1|331448_331682_+|cell-division-topological-specificity-factor-MinE
MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTIDGNQSVETIEVEIILPK
>NC_017355.1|WP_001019042.1|330645_331452_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKKGMEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDSHIISATNKGEPVIRTDCESAKAYQRITKRILGEEVEYVEFKAKRGFFSALKGIFS
>NC_017355.1|WP_001207779.1|329629_330622_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVRVRIGLYQGSLSVLKAKAEGFEVLEIKELVQQSDLIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVILPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYSEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKAREPMGNLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRAPFNHKK
>NC_017355.1|WP_001168215.1|328599_329382_-|NAD+-synthase
MQKDYQKLIAYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSLVSTPESKTDALDLCETFSIPYTEYSIAPYDAIFDSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELLKTEVYELACHLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQNKPIDAETLTQLGYDEILVKNIISRIQKNAFKLELPTIAKRFNPK
>NC_017355.1|WP_000833971.1|327664_328603_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPLSLIYQGIATLKRKTAKKHDFKIPLISVGNLIAGGSGKTPFILETAPRYQEVAVISRGYQRDSKGLVVVSVKGNILVSQQTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGSKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFCLPSGLYRESIKSYKEAHLVITEDKDYKRITSISHPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHAPFDLKLLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLDLKLEICPKVLEQIDRYILSYPCNTKEHL
>NC_017355.1|WP_000742585.1|327189_327732_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYCYKNIQAIDFTHLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKSSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNRGETILKALERIAFEEFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFVSKEKEFIDVLLYYKDKKGYNDRSVLKL
>NC_017355.1|WP_079991743.1|326299_327193_+|CMP-N-acetylneuraminic-acid-synthetase
MQPFEKRMPVKILCDCFLTSGLGHVRRCEKILSFIERLGVKADLHLYKQNDISAFLEGVGNDDFLIIDSYCLNSKDFYLLKEKAKSLMVIEDKEHAKGFYPKNTKIMNFTLNALKHYHYLSKDYRYYLGVGFYPVDIHFVYERPINTENKEVLITLGGSEQKTLKEIVKILENKGMHLHIISPHIPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQTPSLIIPIASNQIIQSQEFENSGIFKQTSLKTLAKDFENLQIQKNQVWAKNLAFGSELEGALREFLEI
>NC_017355.1|WP_041169201.1|335181_335448_+|hypothetical-protein
MEILKLGGCEKHCKKKYTIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANREEPERLRKQVMLILMRTPKGREILKEYLNEGCILLGE
>NC_017355.1|WP_000488081.1|336150_336936_+|hypothetical-protein
MFRCFKTILYASVIVGVLLGLWRLTYDKSCFSLVFVLLILGIVAYSHISLKMHHRRCFAKCFVNKKSRLFKMLHSPIMVSCFYFIFSIFTSVSIACSVLDYNWMMWGIVFCTIVVCAAVFGVFEKMLKNIIKEDYLMLMSREASSFIGTLFFFVLSCYVIYTNNIPGYLKPALIDTIKAASDSAYSNCDYISYVLEFKKMLEGFAWWGMFKAKSMGMNKGFMFAGWVVFIIYNAFSGIAINRLNTQIIYWLSKYFRGEYGK
>NC_017355.1|WP_000426611.1|336925_338113_+|hypothetical-protein
MENDVKDTENLEQAKQKLELEKQKVELEKQKQEKQDKIEQKTKEPESKEQEEEKIKKQKRFSFISKFWGGLVSWLHSNWWKALIGLVIVYIIAEIIAFGGSSEEAKAHKPKKLYKHVEKLLPTDITKYNIDSHQAEINAALNSGIKEMNGVINTQIDGFFDLVEYNVDKFLDWHYSIKGDYSELALKLGEKTGLSAEDVLAKKLQEKLLGKDYEKRLDVLKKVLSKTYASLLSQHEKFVSETALKGVDTDLSQNAKILDTPGDEVVRKLKVNFTGTIGATAGVGAGKLMERLVPKLVKKLGTKLGAKFLAKFGIAVGGVLPTLGADVAFNYIDEWLHRDDFKKEILNNINEMKKNLKESYKTGFDNSITKFSQEFQKGLKNIETISVQAHMGKLK
>NC_017355.1|WP_001117122.1|338157_339039_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFFVRDVLKCSLKEAQRHLDKQRLKHNQQAVRKSQMIQGVVSLIHFKPNEKTQVLVFETKDFGVFDKPPQVYTHPKGYFYHESLLDCIQSHFGKNAHPAHRLDYETSGLVLAGKTLQSAKDLKALFMQKKVKKTYLALAHGLVDKNIVIDKPILTPQNIQKDLRIRSKISPLGKPSTTLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVNHRIVGEGLYGVIDENAREYLQLKRENNAPLLMLHASSLEFEFKGAIHEITSQMPKRFMPFLKD
>NC_017355.1|WP_000810796.1|339038_340589_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERVASIAYNKKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLVGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNIKRKMIQQQVFEEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLTLKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECVKEAIYFNTERFLKAGEKVNAIFSVELDECSNEPKMFVKSLL
>NC_017355.1|WP_000373232.1|340597_342214_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENFNEKTDLESVDAVLVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIEDFIDQNHRKQVRTYNSPLGGTMRLGEYECEIVPNSLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFIGVQFHPEFTSRLQSPNPIILDFIKSALHKS
>NC_017355.1|WP_000829952.1|342473_343136_+|hypothetical-protein
MAENSFKNVTIQSKPFFLSQVKTLFLLGGVFSAFFILMVGLVFFDYANSMDNAIFSLMRLNSSNPILDQTLQRIVFLGSSQFVLPLSLLVGVFLSLYRKNLALGVWFVLSVILFEALLESLKYLLTHSIQWFSYSANFPNATALSLALFYGLLVLLIPHLITHQTLKNILSYSLFGLILLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NC_017355.1|WP_000364759.1|343179_344883_+|flagellar-M-ring-protein-FliF
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALILQHLQQNQIPYKILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMVPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAKG
>NC_017355.1|WP_000201852.1|344901_345933_+|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NC_017355.1|WP_000056250.1|345919_346696_+|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNGASLETPNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKALIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV

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Crispr_ID: NC_017355_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017355_2

532930-533034

Orphan

Consensus_repeat	Method
ATCAGATAGCTCTGAACCCATTTACGCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017355_2

>merge|NC_017355|2|532930-533034|CRISPRCasFinder
ATCAGATAGCTCTGAACCCATTTACGCTACGATTGATGATCTCGGCGGACCTTTCCCTTTGAGTAGATTAGGGCGATCAGATAGCCCTGAACCCATTTACGCTAC

>NC_017355|2|2|532930-533034|CRISPRCasFinder
ATCAGATAGCTCTGAACCCATTTACGCTAC	GATTGATGATCTCGGCGGACCTTTCCCTTTGAGTAGATTAGGGCG
ATCAGATAGCCCTGAACCCATTTACGCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017355.1\|WP_000855267.1\|521124_521832_-\|cag-pathogenicity-island-VirB5-family-T4SS-associated-adhesin-CagL	unknown	unknown	unknown
NC_017355.1\|WP_000609454.1\|528346_528970_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl\|CDD\|293175
NC_017355.1\|WP_000649599.1\|521828_522968_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI	unknown	unknown	unknown
NC_017355.1\|WP_000835486.1\|520121_521042_+\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN	unknown	unknown	unknown
NC_017355.1\|WP_000715278.1\|536418_536622_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NC_017355.1\|WP_000434895.1\|538218_539193_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000670885.1\|528971_529319_-\|sodium:calcium-antiporter	unknown	unknown	gnl\|CDD\|374896
NC_017355.1\|WP_000814281.1\|524578_525385_-\|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown
NC_017355.1\|WP_000690299.1\|534033_534801_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|272885
NC_017355.1\|WP_014533678.1\|533828_534044_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_001029386.1\|540676_541615_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|273113
NC_017355.1\|WP_000495972.1\|525386_528338_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl\|CDD\|273346
NC_017355.1\|WP_001149299.1\|537522_538206_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|129290
NC_017355.1\|WP_000855882.1\|524092_524524_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG	unknown	unknown	unknown
NC_017355.1\|WP_000792881.1\|539189_540011_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000428887.1\|529486_529714_-\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_001004706.1\|534837_536154_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NC_017355.1\|WP_000929259.1\|522978_524091_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH	unknown	unknown	unknown
NC_017355.1\|WP_041169173.1\|540439_540625_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000965288.1\|536646_537510_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390

Protein	Function_ID	Function_description	E-value
NC_017355.1\|WP_000495972.1\|525386_528338_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NC_017355.1\|WP_001149299.1\|537522_538206_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	1.71438e-88
NC_017355.1\|WP_000609454.1\|528346_528970_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl\|CDD\|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	3.5295e-120
NC_017355.1\|WP_000715278.1\|536418_536622_+\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.40477e-32
NC_017355.1\|WP_000670885.1\|528971_529319_-\|sodium:calcium-antiporter	gnl\|CDD\|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	2.33719e-32
NC_017355.1\|WP_001004706.1\|534837_536154_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NC_017355.1\|WP_000690299.1\|534033_534801_-\|glutamate-racemase	gnl\|CDD\|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	2.61265e-123
NC_017355.1\|WP_001029386.1\|540676_541615_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|273113	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_017355.1\|WP_000965288.1\|536646_537510_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	9.6764e-115

>NC_017355.1|WP_000428887.1|529486_529714_-|hypothetical-protein
MENKSIGQIFKDSFKKSFFSGLWSCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYNDLRNKKGWDK
>NC_017355.1|WP_000670885.1|528971_529319_-|sodium:calcium-antiporter
MKFLTRITDSYKKVVVTLGLVITTNPLMAVDSPATGITATKSLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
>NC_017355.1|WP_000609454.1|528346_528970_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRDFFLKVLLSLVVFSSYGSANDDNQAKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL
>NC_017355.1|WP_000495972.1|525386_528338_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLIIEQEVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANSYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRDYSLAFSNDFMRAYNEKQKRESFYDISFFLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDKIELIEELLSKYHPTRLKEYIKDGVVYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAHNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLSDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIKEY
>NC_017355.1|WP_000814281.1|524578_525385_-|type-IV-secretion-system-chaperone-CagF
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFHFFKEINDGQDPQKALSRLIPLQSGKNDASSFKANNSFVSLVYVYVYFMLETIMQSYRILRLLEKPINSNINEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKKELFEKYFQNIDEVTNKMLDQKNQNKNSD
>NC_017355.1|WP_000855882.1|524092_524524_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYPDSSFLPPSLGGY
>NC_017355.1|WP_000929259.1|522978_524091_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH
MAGTQAIYESSSAGFLSQVSSVISSTSGVAGPFAGIVAGAMTAAIIPIVVAFTNPQMTAIMTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYVLALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLVVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK
>NC_017355.1|WP_000649599.1|521828_522968_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI
MKCFLSIFSFLTFLFLNGGEVVITLEPALKAIQADAQAKQKTAQAELKAIEAQSNAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSDILLGIMEGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNTKYIAYNTIGIKAFEETLKGFETWLKVAMQKATLIDYNSLTGQALFQSTIYEPALGFFSSMGTPFGIIETFTLAPTKCPYLDGLKISACLMEQVIQNYRKIVALIQNKLNDADFQNIAYLNGINEEIKTLKGSVDLNALIEVAILNAENHLNYIENLERKADLWEEQLKLERETTARNIASSKVIVK
>NC_017355.1|WP_000855267.1|521124_521832_-|cag-pathogenicity-island-VirB5-family-T4SS-associated-adhesin-CagL
MKTLVKNTISSFLLLSVLMAEDITSGLKQLDKTYNETNQQVLKNLDEIFSTTSPSTNIGKEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTADQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEKLDALEISLEQSKRQYLQERQSSKIIVK
>NC_017355.1|WP_000835486.1|520121_521042_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTLYQRHDDKEVTEEEKEFATNALREKLRNDRARAEQIQKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPATPLVPNEWRTPEIETIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASCAICEKRKKEMEQENNYQDTTNASEFGATDTKKNEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK
>NC_017355.1|WP_014533678.1|533828_534044_+|hypothetical-protein
MKHGISFVDVSVPYWGYKLSLHLARIEDIGEFTLFCLHAFGDGLNLNELSQVTEVDSMTIQKDFLVKRFTI
>NC_017355.1|WP_000690299.1|534033_534801_-|glutamate-racemase
MKIGVFDSGVGGFSVLKSLLKAQLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHKIELLIVACNTASALALEEMQKHSKIPIVGVIGPSILAIKQQVKDKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEENILEGELLETCMRYYFTPLEILPEVVILGCTHFPLIAHPIESYFMEHFALSTPPLLIHSGDAIVEYLQQKYALKKNACAFPKVEFHASGDVVWLEKQAKEWLKL
>NC_017355.1|WP_001004706.1|534837_536154_-|transcription-termination-factor-Rho
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEPIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNEK
>NC_017355.1|WP_000715278.1|536418_536622_+|50S-ribosomal-protein-L31
MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK
>NC_017355.1|WP_000965288.1|536646_537510_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFLPTPIGNLADITLRALEVLERCEVFLCEDTRVSKRLLHLLAQNPIISHSFPNIATQKREFIAFHSHNDQEFLNKVELSFFDKEIAVMSDAGMPSLSDPGMSLVAHALKHNIPYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLKIAKILNALAYLEEKTPVVFYESPHRLLETLKDLNDLAKGMHLFAAKELTKLHQQYYLGEVSQIIERLQQNNIQGEWVLVLLNEKKIEPCMGLSALLELDLPPKIKAKIEAAMTQKNAKELYFQRLLEEKNQ
>NC_017355.1|WP_001149299.1|537522_538206_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MQAVIYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIKVDNKKAQSLAKGGNHQGVLARVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILMDKIN
>NC_017355.1|WP_000434895.1|538218_539193_+|hypothetical-protein
MEQHKKSLENLDLSDVQNISKDISGAALEELSLKNLDKNLQILKEVGVAEICKATKIASKNIHSILEKRYESLSRVRARGFIQILEREYKIDLSAWMKEFDKVCVFKEGVGEEQSREISPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVVVIVLAVVIVQNSSSLKEERGQESTIKSGAKNSSFNDANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEDPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLILKNNHQEQNYNDSKTRRFLYEPTKGLTLINEAQYKEFQQ
>NC_017355.1|WP_000792881.1|539189_540011_+|hypothetical-protein
MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYAMGRLDSLKLLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKRHGFDFTDIRRVSLKEWEYDFVLQKIKLPNARVLALSSDPMEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENRQQEIALNLLDGVRFIHITDAKNPIILKNGISVVFDAMP
>NC_017355.1|WP_041169173.1|540439_540625_+|hypothetical-protein
MKNLALFLLSVSYKKILHFLRLDSKELIQAVFFKAFFRGILAVGGNYFKIPLISLRKTHNF
>NC_017355.1|WP_001029386.1|540676_541615_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MAIYLDFENHIKEIQNEIELALIRGDEDAKEILEKRLDKEVKSIYSNLTDFQKLQLARHPDRPYAMDYIDLILKDKYEVFGDRHYNDDKAIVCFIGKIDNVPVVVIGEEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEYSIFSVISPEGCAAILWDDPSKTEVAIKAMKITPRDLKEAGLIDDIILEPSKGAHRDKFSAANTIKEYFLDALRTIQQDPHFLDNRYQKLMSLGSFVESMN

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Crispr_ID: NC_017355_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017355_3

1108046-1108131

Orphan

Consensus_repeat	Method
CATGCGAGAAGTAGTGGTTCAAGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017355_3

>merge|NC_017355|3|1108046-1108131|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAACGCTTCAAGGGAGTTTTCTTTGATCTCTGCATGGGCATGCGAGAAGTAGTGGTTCAAAAAC

>NC_017355|3|3|1108046-1108131|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAAC	GCTTCAAGGGAGTTTTCTTTGATCTCTGCATGGG
CATGCGAGAAGTAGTGGTTCAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017355.1\|WP_001265748.1\|1106826_1107873_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_017355.1\|WP_014533794.1\|1101803_1103630_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|130264
NC_017355.1\|WP_000656168.1\|1112209_1112602_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236596
NC_017355.1\|WP_000735680.1\|1098223_1099774_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000893880.1\|1114901_1116224_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NC_017355.1\|WP_000576547.1\|1109359_1110667_+\|hypothetical-protein	unknown	unknown	unknown
NC_017355.1\|WP_000542171.1\|1104985_1105669_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NC_017355.1\|WP_014533793.1\|1099814_1100033_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NC_017355.1\|WP_000238152.1\|1113847_1114792_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NC_017355.1\|WP_001196139.1\|1096661_1097696_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|273487
NC_017355.1\|WP_148214514.1\|1119284_1120310_-\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|152468
NC_017355.1\|WP_001152775.1\|1101158_1101785_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|273490
NC_017355.1\|WP_000892740.1\|1100216_1101089_-\|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl\|CDD\|223861
NC_017355.1\|WP_012443396.1\|1110673_1111345_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_017355.1\|WP_000486460.1\|1111633_1112194_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NC_017355.1\|WP_001127881.1\|1117137_1119114_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_017355.1\|WP_000883583.1\|1103697_1104975_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223441
NC_017355.1\|WP_000816650.1\|1116293_1117127_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_017355.1\|WP_001129839.1\|1112611_1113835_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NC_017355.1\|WP_001126849.1\|1105655_1106666_+\|glucokinase	unknown	unknown	gnl\|CDD\|129832

Protein	Function_ID	Function_description	E-value
NC_017355.1\|WP_001265748.1\|1106826_1107873_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.59709e-162
NC_017355.1\|WP_014533794.1\|1101803_1103630_-\|phosphogluconate-dehydratase	gnl\|CDD\|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NC_017355.1\|WP_000656168.1\|1112209_1112602_+\|4Fe-4S-binding-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	1.31619e-83
NC_017355.1\|WP_000893880.1\|1114901_1116224_+\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NC_017355.1\|WP_000542171.1\|1104985_1105669_+\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	1.29966e-91
NC_017355.1\|WP_014533793.1\|1099814_1100033_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.9418e-11
NC_017355.1\|WP_000238152.1\|1113847_1114792_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	1.05683e-135
NC_017355.1\|WP_012443396.1\|1110673_1111345_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.14237e-35
NC_017355.1\|WP_148214514.1\|1119284_1120310_-\|DUF3519-domain-containing-protein	gnl\|CDD\|152468	pfam12033, DUF3519, Protein of unknown function (DUF3519). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 117 to 1154 amino acids in length. This protein has a single completely conserved residue Q that may be functionally important.	4.08219e-27
NC_017355.1\|WP_001152775.1\|1101158_1101785_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	6.83585e-111
NC_017355.1\|WP_000892740.1\|1100216_1101089_-\|Sel1-like-repeat-protein-HcpC	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	7.84975e-46
NC_017355.1\|WP_001196139.1\|1096661_1097696_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|273487	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE. Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described by a separate model. [Energy metabolism, Sugars].	0
NC_017355.1\|WP_000486460.1\|1111633_1112194_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	8.0658e-128
NC_017355.1\|WP_001127881.1\|1117137_1119114_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_017355.1\|WP_000883583.1\|1103697_1104975_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0
NC_017355.1\|WP_000816650.1\|1116293_1117127_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.83106e-32
NC_017355.1\|WP_001129839.1\|1112611_1113835_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NC_017355.1\|WP_001126849.1\|1105655_1106666_+\|glucokinase	gnl\|CDD\|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0

>NC_017355.1|WP_001265748.1|1106826_1107873_+|NAD(P)-dependent-alcohol-dehydrogenase
MRVPSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGVIKEVGKEVKKFKIGDAVGVGCFVNSCKACKPCKEHQEQFCHKTVFTYDCLDYFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMMDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NC_017355.1|WP_001126849.1|1105655_1106666_+|glucokinase
MPKTETYPKLLADIGGTNARFGLEVAPRQIECIEVLLCKDFESLSDAVRFYLSKCKESLKLRPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLDLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKMAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVLKKTPGLDGAGIALENYLLHDKI
>NC_017355.1|WP_000542171.1|1104985_1105669_+|6-phosphogluconolactonase
MGYQLFEFENLENCHKALTERFKEFFNAALKKHHQVSIAFSGGRSPIGLLQKLSVLDLKWHACLVSLVDERIIDTNHDDSNTKLLHDYLLQNNALKASFIPLLPEKISSDTNALFNFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLVKPANAPYERLSMSINALENCEKLFLSISGAQKKGVLEKALKENAPYSLPIARILHSQKVTTEVFYAKN
>NC_017355.1|WP_000883583.1|1103697_1104975_+|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSNEEFLALLCEKTQLHSREKGREFLAHISYFCVRLDNPKDFEKLSKIATKNKPLIFYFSISPGFFATTAQHLAKNALNHANARLILEKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKVKVLKTLQPPKDFKKQVIRAQYQGYRDENKVHKESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPRNQASVKIHFNAVNTLEFFLSQDKITLTLQDHQNPLILETHHKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYESHNLNESEFLKPLYQ
>NC_017355.1|WP_014533794.1|1101803_1103630_-|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDWIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGEVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLAFVIKELLKEGLLFEDVHTIMDTETQKGMQNYTKTPFLENDQLVYKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDLIELDAPNNALNVLEKDFDKRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
>NC_017355.1|WP_001152775.1|1101158_1101785_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIIPVVVIEDIKDAVPLAQSLIEGGIQIIEVTLRSSCALEAIELIAKNVPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKDMPLIPGVSSSSEVMQALELGYSALKFFPAEYCGGVKLLNAFSGPFKGVKFCPTGGISTDNMHSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRSLALR
>NC_017355.1|WP_000892740.1|1100216_1101089_-|Sel1-like-repeat-protein-HcpC
MLENVKKSLFRVLCLGALCLGGLMAEQDPKEFVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLDYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGAPKDLKKALASYDKACGLKDSPGCFNAGNMYHHGDGVAKNFKEALDRYSKACEMQNGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDLLKQLKIKA
>NC_017355.1|WP_014533793.1|1099814_1100033_-|sel1-repeat-family-protein
MAEIDLGYAHLVNWGKESYDKQDFTQAKKYFKKACDLKEGMGCVNLGALYYNGEGVEQDLKKAAQYYQKACV
>NC_017355.1|WP_000735680.1|1098223_1099774_+|hypothetical-protein
MKKLLYTILALLLIGLLTTYLILFTEWGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQSNDDSVLILKGDFSLLKQSMDLNYHIDIKDLRSFKEWIPYPLRGAVITSGNIKGHRKALLIQGVSNVAQSHTAYNALLDDFKLSHLSLNAKDANLEDLLYLFNRPAYANARVSLQADFNSLKPLEGHLILTANNALINSTLINNALINQIFHLNLKDALVFNLSHSSDFKENKAISDTTLTSPLANFTALKSEYLFSALKLNAPYTLEIPNLAKLPNITNHPLKGSLTLKGAIEQSPKLLKVSGHSNLLDGALDFTLLNKDLKARFSNISTLKALDLFNYPKFFQSVADANLDYDLIAKQGVLKARLKNARFLKNSFSDFLYSISKFDITKEIYNDANLVSQINQQRLLSNLSLKSPKTQLKIHNGLLDLNTKQMDMLMDAEILKFVFKMKLQGSMHQPKFSLILNEKAIQQNLQQGLKEILKNDSIKKGLDHLLKDDKLKEKLEKGLKGLF
>NC_017355.1|WP_001196139.1|1096661_1097696_-|UDP-glucose-4-epimerase-GalE
MALLFTGACGYIGSHTARAFLEKTKENIVIVDDLSTGFLEHIKALEHYYPNRVVFVQANLNETQKLDAFLNKQQLKDPIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCLKHAIKRFIFSSTAVVYGESDFSLNEESPLNPINPYGASKMMSERILLDTSKIVDFKCVILRYFNVAGACMHNDYATPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGTCIRDYIHVDDLANAHLASYQTLLEKNKSEIYNVGYNQGHSVKEVIEKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTPFKPLYNNLDTIIKSALDWEEHLLRFQ
>NC_017355.1|WP_000576547.1|1109359_1110667_+|hypothetical-protein
MIFLKKSLCALLFSGFLTPPLIKAASFVYDLKFMSFNFNLVAPANNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNASSHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQVQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTIDTRELIDFVKSKTSK
>NC_017355.1|WP_012443396.1|1110673_1111345_-|outer-membrane-protein
MNETNKTMVKILMGMALLSSLQATEAELDEKSKKPKLADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSQKMFLGLEFGLGIAGATYMPGGAMHGVIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPFIPNKRTEIVDGLSATTLWHRLPVAYFNYIYNF
>NC_017355.1|WP_000486460.1|1111633_1112194_+|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRIDDEPILNHERFMRPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NC_017355.1|WP_000656168.1|1112209_1112602_+|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIDPASALTQWPQKQEKKKS
>NC_017355.1|WP_001129839.1|1112611_1113835_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MAKSIELQEIEVWDGNMASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTRTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLRGPKMSFF
>NC_017355.1|WP_000238152.1|1113847_1114792_+|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGFQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPSGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVDERWEYLQRREEAKV
>NC_017355.1|WP_000893880.1|1114901_1116224_+|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICSKAAFNLERIKEIEKTTKHDLIAFITCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGIKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANINNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFVTSDFMLSRLNSVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSKEESYSIVQENAMKIWEVLQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFG
>NC_017355.1|WP_000816650.1|1116293_1117127_+|outer-membrane-protein
MKRALCLILGLFCALNAKGFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQQNSSNLNLFQNFTKTQIIFSDGLSPVFKNSYVSNGLGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGLKESRSVIISTYGTYMDLLFNAYNGDKFFAGFNLGIAFAGVYNKLSDALLYQTLLQDTFGGKVDPNGFQFLVDLGVRLGNERNQFGFEIKVPTYYLNHYYSMNNISNNSGDVLKVLRFLEYGINSVLYRVDFRRNYSVYFNYTYSF
>NC_017355.1|WP_001127881.1|1117137_1119114_-|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELKLRDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
>NC_017355.1|WP_148214514.1|1119284_1120310_-|DUF3519-domain-containing-protein
MAESLKPATTKNLSQGLATTLSGALKYQWTKFTLGTLYRNAPDRILGIKLPKALNEATAGTALKYHIKRALERSHTISDFTKQLELSAKNSKFTNNTLKIIEELNNGVKQASEEIIKKASDLEHAITPLKEFGKNYPEFALKPKEALEKLLQEKNGQVAGAAYREDLGGIDFVWGNKDYGLEHILKRREDQAIAKGLNEAEAKEYALNVVKSIPEIIEKGVKVDNNGRIAIEYKNIRVGLKDNWKGEKLPNHWVITSYEKVLEGSESLYSSPLITKSEHLLLNSNEPNLTTSALKDQDLSPLELANAEKLAKLESDRIESKKEFLTSHQIFLREAKDNAIN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage