CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	5 crisprs	cas3,PD-DExK,csa3,DEDDh	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014313_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014313_1

1334687-1334929

Orphan

Consensus_repeat	Method
TGATCCCGATAACGACGGCACGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_014313_1

>merge|NC_014313|1|1334687-1334929|CRISPRCasFinder
TGATCCGGACAATGACGGCACCGTGGATCTTCAGGAAGCCAAAGCAGCCGCCGCCAAGCTGTTCACGAAGCTTGATCCCGATAACGACGGCACGCTCGACGCAAAAGAGCTGTCGGGCCGTGTGGACGAAGCGGAGCTGAAGGCGGCTGATCCGGATAACGACGGCACGCTGGATCAGAAAGAATACGAAGCCATTGTCGAAGCGCGCTTCAAGGCGGCTAATCCGGACGACGACGGCACGCT

>NC_014313|1|1|1334687-1334929|CRISPRCasFinder
TGATCCGGACAATGACGGCACCGT	GGATCTTCAGGAAGCCAAAGCAGCCGCCGCCAAGCTGTTCACGAAGCT
TGATCCCGATAACGACGGCACGCT	CGACGCAAAAGAGCTGTCGGGCCGTGTGGACGAAGCGGAGCTGAAGGCGGC
TGATCCGGATAACGACGGCACGCT	GGATCAGAAAGAATACGAAGCCATTGTCGAAGCGCGCTTCAAGGCGGC
TAATCCGGACGACGACGGCACGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014313.1\|WP_013215345.1\|1341989_1342847_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_014313.1\|WP_013215340.1\|1337893_1338436_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NC_014313.1\|WP_013215331.1\|1329623_1330889_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NC_014313.1\|WP_049775207.1\|1335934_1336915_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|350614
NC_014313.1\|WP_013215343.1\|1340008_1341013_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NC_014313.1\|WP_013215325.1\|1323320_1324340_+\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013215341.1\|1338439_1339444_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|379234
NC_014313.1\|WP_013215330.1\|1327960_1329229_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226654
NC_014313.1\|WP_013215329.1\|1327314_1327971_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NC_014313.1\|WP_013215328.1\|1326671_1327211_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|376823
NC_014313.1\|WP_013215342.1\|1339440_1340019_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013215337.1\|1335577_1335913_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013215333.1\|1333203_1333524_+\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013215344.1\|1341009_1341990_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013215332.1\|1331040_1332867_-\|methanol/ethanol-family-PQQ-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|199836
NC_014313.1\|WP_013215339.1\|1336940_1337897_-\|YncE-family-protein	unknown	unknown	gnl\|CDD\|225926
NC_014313.1\|WP_013215326.1\|1324877_1325279_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_014313.1\|WP_013215334.1\|1333689_1334307_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_014313.1\|WP_041921897.1\|1342843_1343851_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_014313.1\|WP_013215327.1\|1325259_1326669_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|224169

Protein	Function_ID	Function_description	E-value
NC_014313.1\|WP_013215340.1\|1337893_1338436_-\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	1.79e-40
NC_014313.1\|WP_013215331.1\|1329623_1330889_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.58751e-43
NC_014313.1\|WP_049775207.1\|1335934_1336915_-\|TraB/GumN-family-protein	gnl\|CDD\|350614	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues. Tiki is a membrane-associated metalloprotease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In xenopus, tiki is critical in head development. In human cells, TIKI inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of WNT contributes to birth defects, cancer and various diseases. TIKI homology domains are part of the TraB family and are related to the Erythromycin esterase, GumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, Chan-like proteins. TraB/PrgY are identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne, TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to TIKI activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. The TIKI/TraB family has 2 conserved GxxH motifs and conserved glutamate and arginine residues that may be catalytic.	3.86955e-60
NC_014313.1\|WP_013215343.1\|1340008_1341013_-\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	5.22492e-17
NC_014313.1\|WP_013215341.1\|1338439_1339444_-\|VWA-domain-containing-protein	gnl\|CDD\|379234	pfam13519, VWA_2, von Willebrand factor type A domain.	1.04368e-07
NC_014313.1\|WP_013215339.1\|1336940_1337897_-\|YncE-family-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	3.71176e-32
NC_014313.1\|WP_013215329.1\|1327314_1327971_-\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	1.57101e-72
NC_014313.1\|WP_013215328.1\|1326671_1327211_-\|OsmC-family-protein	gnl\|CDD\|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	1.19897e-21
NC_014313.1\|WP_013215330.1\|1327960_1329229_-\|PAS-domain-S-box-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.06365e-42
NC_014313.1\|WP_013215332.1\|1331040_1332867_-\|methanol/ethanol-family-PQQ-dependent-dehydrogenase	gnl\|CDD\|199836	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF). Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.	0
NC_014313.1\|WP_013215345.1\|1341989_1342847_-\|VWA-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	8.50288e-07
NC_014313.1\|WP_013215326.1\|1324877_1325279_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	6.77143e-44
NC_014313.1\|WP_013215334.1\|1333689_1334307_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.43714e-45
NC_014313.1\|WP_041921897.1\|1342843_1343851_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.19988e-47
NC_014313.1\|WP_013215327.1\|1325259_1326669_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	7.7866e-153

>NC_014313.1|WP_013215334.1|1333689_1334307_+|response-regulator-transcription-factor
MKLLVVEDHPIVISGCRALFTEDAGVTMIEARTAAAARLALKNDAPDVSVIDINLPDGSGLELTREFIAHDPEAKIVVFSMSDTPMLAIQAVECGAKSYVSKNGSPSDLKDAVFAVARGEIWISDDLIQEMALLRAKAFGATTFLSEREHQVLRMLARGRSMAEIANDISVSYKTVAADCAMLRTKLGARTSSELIRIAVELKLV
>NC_014313.1|WP_013215333.1|1333203_1333524_+|hypothetical-protein
MQPARLKIAAASTLLLVPMLIASASTGMANTDAPRWEVGSICQAAKSVTACTRREALSRATVLDRWLATPDGDRQFCLEELKTKDVESYWSLLDCLGNRAIANDAS
>NC_014313.1|WP_013215332.1|1331040_1332867_-|methanol/ethanol-family-PQQ-dependent-dehydrogenase
MRKSAFTLGLLATAAFSGPSWANESVIKLTSDPNNWAIQSGDYAGTRYSTLDQITTENVGQLKVAWTFSTGVLRGHEGGPLVIGDTMWLHSAFPNIVFALNLADEQKIIWKYEPKQDPAVIPVMCCDTVNRGLAYADGKIFLHQADTSLVALDAKTGKELWKVVNGDPKRGETGTQAPMVIKDKIVVGISGAEFGVRCSMTAYDINSGKRVWRAYSMGPDSDVLVDPEKTMMLGKPVGKDSSLKTWNGDQWKIGGGSTWGYMAFDPDLNLMYYGTGNPSTWNAGQRAGPDGKPIDQLYSMTMFARDADTGIAKWAYQMTPFDEWDYDGVNEPILAELDFGGTKRKAVTHFDRNGFGYTWDRATGELLVAEKFDPVVNWATGVDMDKSSKNYGRPIRVAKYSTFADGKGTDVNHKGICPAALGSKDQQPASYSKLTGLFYVPTNHVCMDYEPFKVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDGVKGKIVWSKPEQFSVWSGALTTAGGIAFYGTLEGYFKAVDQKDGKELFKFKTPSGIIGNAMTYTHGGKQYVAVFSGVGGWAGIGLAAGLTNPNDGLGAVGGYAGLKQYTNLGGSLTVFSLP
>NC_014313.1|WP_013215331.1|1329623_1330889_+|MFS-transporter
MIPADRAQTISTVSLGLKQNWRQFSLLVLINAFVGGMVGIERTVVPLIGAEDFHIESATLITSFIVSFGLVKAFANLVSGQLADRWGRKHVLVIGWLIGLPVPFMIIGAPNWGWIIAANVLLGLSQGFAWSMTVIMKIDLVGPKSRGLAVGLNEFAGYFAVGATAFLTGYLASQYGLRPVPIYLGVFYAVAGTLLSTLVVRDTRHHVELEAKGAAQDASPLSFREVFLLTSCKDRNLFAASQAGLVNNLNDGMSWGIFPLFFTGLGLGVERIGIIKAIYPMVWGITQVVTGPLSDRWGRKGLIVGGMWVQAGGLILTAVSSEFSGWMVASVLLGLGTAMVYPSLIAAVSDAAHPSWRARSLSVYRFWRDLGYAIGALSAGLIADRFGFAAAICAIGALTFVSGCVVAVVMTDDNRRMARRP
>NC_014313.1|WP_013215330.1|1327960_1329229_-|PAS-domain-S-box-protein
MLQPIEYGLLSLVAMLVAISAYSARMYASLRRARFGLQTETFNRLAAEERLADREQRLCQIIATEPECVKIQSLDGVILEMNPAGLSLVDADNADDIVGTSVYRVVATEYHEAYEAMTKRVFNGESVKLEFKILSLKGSLRWLETHAAPLRDQDGAVTALLGITRDISELKRYEDEMRLHYRELSVASRLNSMGQMATALAHELNQPLAAIANYSRGCLYRLENGSKSAELKRAMEHVCSQAERAGDIIASIRRFLSKGNVTFRQLDIGTVLSDAIRIVAPEAQAHGVKLCTRGVGSIPPIMGEAIQVEQVILNIVRNAIEAMATDENGRGRTVTISSEYSQSGLVRVSFNDCGPIAPAIDTEKMFEAFFTTKPKGMGMGLPISKSIIEAHGGQLLVKTNAPNPGLTFVIELPARKRVENAD
>NC_014313.1|WP_013215329.1|1327314_1327971_-|response-regulator-transcription-factor
MRTSEWVFVVDDDRAARESLEYLLTSVGYRVCGFQSANDFIAGYGDRVGCLILDVRMPGMSGLQLLLELERRQPPLSTILVTGHGDVPMAVTAMRHGAIDFLQKPFNNQALLDRTEEAMARARGLYKAEISRSEVDANFNRLTCREREVAWLIFGGMSNKQIAAELELSCKTVEAHRANVMGKMSAHCVVDLVQKLNVLVGPKPFPDLKSVRSHSTAG
>NC_014313.1|WP_013215328.1|1326671_1327211_-|OsmC-family-protein
MSQDAIKQTLLAAIDNVKQNPAAAKVVFRASTQLGEGMHCTGTVRDFPAMSIDEPADLGGSDRGPNPVELVLVALGTCQEIVYRAYASVLGIELESVTCNLRGYLDLRGLFGMDEGVPAGFQKIIFDTEIRSNASREDLQKLAQIVEAHCPVLNTLQTPVEVAGNVVINGQAMALEATA
>NC_014313.1|WP_013215327.1|1325259_1326669_-|dihydrolipoyl-dehydrogenase
MSHIIVLGGGPAGYVAASHAAAHGARVTLVDPKPLGGTCLNQGCVPTKVLVESCGLLEKIKRAESFGLQFSGSVAGNWAAINRRSASIIEMLGQGIERLMEDREVTLLRGYGELVDAHCVRVNDQVVRADHILICTGSTPQADPQFDIDGATIGTSDDLLAWESLPRSMLIVGSGIIACEFAFVLDSLGVDVTVLASGPRLMSHADKDISSVLQREMRKRGIKVQLNCRIQSLTHTEEGVSAYADDKIVGAAERALVAVGRRANTAGIGLEAAGIRTNEWREICVDDVLRTNVPHIYAAGDVNGRSGLAHAASAQAKLAIDHMLRREFSLLDDGAIPVAVFTNPEIGWVGRTEHAAVGDGLSVEIGKFDLRGLGRAHALDEISGMAKVVVDKHSGELIGLHVIGPHASEIVHEGALVIQRNGKANELFRTVHAHPTISEGILEAVEDAIGQATHKPMNRQRSANALQLI
>NC_014313.1|WP_013215326.1|1324877_1325279_-|glycine-cleavage-system-protein-GcvH
MPSSLSDEMGFHPCHLWVRRCSEPGEAHVGLSDFAQKQLGKIMYVDLPQAGTSIEADIPFGTVESFKVVSELLAPVSGVVLDVNGSLKGQANLLNDDCYGAGWLVRIRVDENANLSSLLTADAYMQMLGAKAR
>NC_014313.1|WP_013215325.1|1323320_1324340_+|hypothetical-protein
MNHGRRGFLAAAFGTGVALTLGSAGAFAARKTTGHRQITPSKTQVRSRSAPLATARTALVPFDTAPFPYRGTMPGSNAPFLNVTEGSRKGHRTGSGRVYWEDETYNDNRVLLHIPKGFDIRRPALMMVFFHGHGATLERDVLDRQKVPAQISASNANVVLVAPQLAIDARDSSAGKFWQPGAFGRFVGEAGQQLARLFGEKRALRTFASMPIVLVAYSGGYVAAASAIEQGGLKKRVRGVVLLDSLYGDLDKFAHWIEADPSAFFVSVYLGSTRNQNAQLEGILAAHDVDVSPELSTRLATGGVTVAPGGAGRHRDLVTHAWVDYPIIDILQRLPEYRR
>NC_014313.1|WP_013215337.1|1335577_1335913_-|hypothetical-protein
MLKIIDARCAVLMCVTLAASMPAAAEGRFCGSQVESGEASAATEDEAKKAATVWWSSRAGALGRGYEFWENSKDKAVNCHAGPRNTFKCIAVGKPCLPEGVLPQHGPKQDL
>NC_014313.1|WP_049775207.1|1335934_1336915_-|TraB/GumN-family-protein
MAMTTNFGFSATSKDADETPCVPTSVLYEIDHRDRGKLEKILNDASRVANSEAVLWRIDKSGTPASFLFGTVHVIDKNLQSLSQATLAAIDSSKVVAVEAAETSRSSLTNAMAQAQPLMVSRDRELQRILADDEMAVVEKVLADAGYPPQLALGLKPWAVTMFLADSRCQRQLQDLGMKPIDTLVIERAQASGTRIVGLETTFEQYSSLASIPSDLQATWLKASIELHPRVDDVTQTMSELYRFRRMDAAWTLTRELAPNAGLDDATLASLREELVSKRNERMIERALPLLDQGSVFIAVGAMHHLGPHGLVALLRERGFAVTAIE
>NC_014313.1|WP_013215339.1|1336940_1337897_-|YncE-family-protein
MIARVVGLVLALTLAAASANTAEARQAVYVLCQDAGILAVIDTQVDEISARIELAGKPASFAIDAMSGDAFVTQPETGKIVVADLRTHNVVRTLDIGGQPFGVGIDRSGTLYVGDWSKDRVAVVDPRSGAISKSIPTGRSPAHLVISEDGSRLYVANREADSISVIDTRKQDVIKEIGVGHAPFALTLTPDQTKLIVANAQSATLSIIDTSSLSVVSSSETRKMPYGLAVTKNGSQLLVANQANGSVSVFDASTRQLRAEIKVGRYPEGLAAIQDGNKAYVANWFSATVSVIDLATNTEIKRIKTPDGPRVVLAASLR
>NC_014313.1|WP_013215340.1|1337893_1338436_-|SRPBCC-family-protein
MNFVPPLVASLLILAASFSAASAHGPTPQKADEKITVAAPPAAVWDVIKEFAAIGDWHPGLAKVTAEGGNKEGATRTLTLKSGGDIVESLDSYNEKEMSIEYRLLKENVDAFPVSFYSDQISVRPADGGSEIEWTSRFYRADTTNEPPEDKNDEAATKATTDFFQAGLAAIKAKAEGKGK
>NC_014313.1|WP_013215341.1|1338439_1339444_-|VWA-domain-containing-protein
MMAFGIPWDRRMFLLIAGLTLTLAALVGFHVVRNQNVVDAVAIVDITGSMNTRDMGSPPGSASRLQAARNALVDLVQSVPCQSRLGLGVFTERISFLLFNPVEICNNYDGLEDALSELDWRMAWQGDSYIAKGLYSAIDIAASLKADLIFLTDGQEAPPLPFTGTPPFEGKLGDVKGLIVGVGGTEKVPIPKFDDEGRQSGVYGPSDVPQDNRIGAAPPGAETREGYNPRNAPFGAPPESGEEHLSSVKTAHLTDLADKTGLTYVELQKSGGIANKLMASAKKRVVPTSMNMAYVPASLALLSLILLYALSLVGDPRLTNRARLARLLSSKSGA
>NC_014313.1|WP_013215342.1|1339440_1340019_-|hypothetical-protein
MPLSLVKFLSPWRGPILWMIAVLALLFTAATSMQLWRTQSANSAISALTANKDTSVDPKHSPSELILARVNQLITHDRIEDAQALLSSSEANIDPHVRARALYNIANERTRRGSEFVRKGDLDHAAALINVAKSEYRLALKLDPADWNTKFNLDIAMRIVRDLPQAENLPDDEQATPKKVWTDLPGVPKGLP
>NC_014313.1|WP_013215343.1|1340008_1341013_-|VWA-domain-containing-protein
MIFTNPMALYLLPLAILPLLLSVQRQEGYPSLSGFEADRTSQVIALALRIAGTLAMLGLILGIAGLSLRERTIDRFGQGAHIVLLIDRSSSMDDTFAGRPPSGGQESKSAAAKRLLKDFVTERAHDRFGVAAFSTSPIHVLPITDHKKLILGAIDAIDRPGLAFTDVGRGLAMALDMTQEDISQASRAIVLVSDGAAVIARRVQESLRAEFARQPVHLYWLYLRTQGTNGIFEPPPPGVDDIPQVLPERHLNMFLQGLHVPYRAFEAESPEAVKAAITEIGKLEQTPIVYSERVPQYDLSRWAYSLAALGMGVLLAAKFFERSVTPKRGDAHAA
>NC_014313.1|WP_013215344.1|1341009_1341990_-|hypothetical-protein
MRAWLILAFLIIGGAPCKAAVEAVNIYEPRAFGYFIGDTFERRIEVVTTGDTELLAAGLPRSGPLTYWLELINVDHKVRETQGRKIHDITLKYQTFYAPIEAVKVKIPAYPLKFRNPGTVPAAQTSDTAPGTEIPSSQDVASIPAFQIVMSPLREYAVSDFMSGKSVELADIMAPDAKAHAISTSRQTTWLGLGLAALALSALLLLWHYAKGPFAKRKGRPFTMADRRIRELQTAAGSDSRYRDSLIALHRAFDESYGRRLFAEDLSTFLSQRQRFSTLKEALQKFFESSRIFFFSGNKQSAESKFPIEDVRKLAADLAREEKAAA
>NC_014313.1|WP_013215345.1|1341989_1342847_-|VWA-domain-containing-protein
MSDELRDVAYSIPWRTSGIRAGAHRSHLYGGGGRFRDIVPLLSLPDPRRIAIRASLNDPFERLLVRRFEQPSAIDVAVLVDVSTSMAFEGRCNKISLAADLAQALAVCAERAGDTFSLLPFDSTLREDLRLQRTLSRAAHSQAIEKLRAFTPEKPGVSGVLEAATAVSGTRRLVFLVSDFLWSTEDARRAGEALAFHDVVPVEIDDSLQLDELPDWGLLNLRDLETGSRRLVAMRPSLKARWQAARQEQRARTRQVFDTTAREMFTIRDRIDWMRLTSFLLYGSV
>NC_014313.1|WP_041921897.1|1342843_1343851_-|MoxR-family-ATPase
MNLADWRQHALELESEVAKAVVGQDRAIRLMVIAIFARGHVLLEGDVGVGKTTLLRAVARTLGGAYERVEGTIDLMPSDMIYYTFLNEEGKPRVEPGPVLRHGSDLSVFFFNEINRARPQVHSLLLRLMAERSITAFNTEHSFPHLLVFADRNRIEREETFELPAAARDRFLMEVAIATPPDEESRRQLLFETRFHDVDALIGILKEGVVDYRQLNALAKVIQSSITVSPALERYTLDLWNAVRNPASAGLNVAGVDVGKLVAGGASPRGMSYLIRAARVSAWLTGRDMVVPEDIRDIFYECMAHRIFLAPVYELRREELVRALISDVFAKVPAP

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Crispr_ID: NC_014313_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014313_2

2253454-2253559

Orphan

Consensus_repeat	Method
CCGCCAGCACAGGCGTGTGTCGTCGTTCTTCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014313_2

>merge|NC_014313|2|2253454-2253559|CRISPRCasFinder
CCGCCAGCACAGGCGTGTGTCGTCGTTCTTCGCAGTTTATTTGGTGCTGGCGACTCCCCTGCGGGGAGCCGGCCGCCAGCACATGCGTGTGTCGTCGTTCTTCGCA

>NC_014313|2|2|2253454-2253559|CRISPRCasFinder
CCGCCAGCACAGGCGTGTGTCGTCGTTCTTCGCA	GTTTATTTGGTGCTGGCGACTCCCCTGCGGGGAGCCGG
CCGCCAGCACATGCGTGTGTCGTCGTTCTTCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014313.1\|WP_013216154.1\|2254934_2255642_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|237927
NC_014313.1\|WP_150103381.1\|2254305_2254602_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215248
NC_014313.1\|WP_013216155.1\|2255667_2255946_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239656
NC_014313.1\|WP_013216146.1\|2245521_2248653_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_014313.1\|WP_013216158.1\|2257466_2257754_+\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_169305508.1\|2260413_2260644_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216151.1\|2253734_2254079_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NC_014313.1\|WP_013216149.1\|2251130_2252477_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223531
NC_014313.1\|WP_013216139.1\|2240755_2241277_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|235782
NC_014313.1\|WP_013216140.1\|2241650_2242019_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NC_014313.1\|WP_013216148.1\|2249704_2251144_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216156.1\|2256074_2256362_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216143.1\|2243182_2243578_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_014313.1\|WP_013216138.1\|2239581_2240535_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NC_014313.1\|WP_013216157.1\|2256569_2257415_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180744
NC_014313.1\|WP_013216141.1\|2242095_2242509_+\|glyoxalase/bleomycin-resistance-protein/dioxygenase	unknown	unknown	gnl\|CDD\|319943
NC_014313.1\|WP_013216160.1\|2259067_2260387_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_014313.1\|WP_013216144.1\|2243630_2244251_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_041922002.1\|2257889_2259071_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_014313.1\|WP_013216147.1\|2249050_2249524_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226383

Protein	Function_ID	Function_description	E-value
NC_014313.1\|WP_013216154.1\|2254934_2255642_+\|carbonic-anhydrase	gnl\|CDD\|237927	PRK15219, PRK15219, carbonic anhydrase; Provisional.	6.29008e-76
NC_014313.1\|WP_013216155.1\|2255667_2255946_-\|hypothetical-protein	gnl\|CDD\|239656	cd03684, ClC_3_like, ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles.	0.00927967
NC_014313.1\|WP_150103381.1\|2254305_2254602_-\|hypothetical-protein	gnl\|CDD\|215248	PLN02451, PLN02451, homoserine kinase.	0.00143419
NC_014313.1\|WP_013216151.1\|2253734_2254079_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	6.11474e-63
NC_014313.1\|WP_013216138.1\|2239581_2240535_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.53802e-35
NC_014313.1\|WP_013216149.1\|2251130_2252477_-\|hypothetical-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	6.76563e-06
NC_014313.1\|WP_013216139.1\|2240755_2241277_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|235782	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional.	9.72929e-86
NC_014313.1\|WP_013216140.1\|2241650_2242019_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	1.11304e-07
NC_014313.1\|WP_013216143.1\|2243182_2243578_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	5.18442e-33
NC_014313.1\|WP_013216146.1\|2245521_2248653_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_014313.1\|WP_013216157.1\|2256569_2257415_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180744	PRK06914, PRK06914, SDR family oxidoreductase.	5.33249e-87
NC_014313.1\|WP_013216141.1\|2242095_2242509_+\|glyoxalase/bleomycin-resistance-protein/dioxygenase	gnl\|CDD\|319943	cd08355, TioX_like, Micromonospora sp. TioX and similar proteins. Micromonospora sp. TioX is encoded by a gene of the thiocoraline biosynthetic gene cluster. Thiocoraline is a thiodepsipeptide with potent antitumor activity. TioX may be involved in thiocoraline resistance or secretion. TioX belongs to vicinal oxygen chelate (VOC) superfamily that is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.62722e-20
NC_014313.1\|WP_013216160.1\|2259067_2260387_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.99029e-47
NC_014313.1\|WP_041922002.1\|2257889_2259071_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.99264e-43
NC_014313.1\|WP_013216147.1\|2249050_2249524_+\|VOC-family-protein	gnl\|CDD\|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	2.04043e-76

>NC_014313.1|WP_013216149.1|2251130_2252477_-|hypothetical-protein
MTPSSNHHSTVARFDDALPTFVRLALSEFGEEFLGRSLILRDANGRLTLIIRGDVDQSTRKRFDTAAEASLGAYVSGPTATPQEIFDDSLQSNEGAIAERVLVDGSYVAVQLVDRRIVGQDWNQPHFTSSKPPLAVFFSVKGGVGRTTALAVAAAAFSHQSKNILVIDLDLEAPGLASVLLPIENLPKYGALDYFVENGLNGVDDGFLEDCISPSPLTAGRGLVEIVPAVGRIGRKNPQNILPKLGRAFLDDPNERGAMNSFGDQVRELVKAFTARRRYDAVFVDARAGLSESTSAAIMGLGGEILMFGVDTPQTFDGYSYLLAHLGRFAKEAKSIDDWRSRLRMIHAKADRGVEALSHFRDQAQEVFSAYIYEEASPGDFDAFNFDLDDPDAPHFAWPIPYDAAYAEFDPTARREQLTREFFDRTFGPFVNRLAEVLFGLESTDGGQ
>NC_014313.1|WP_013216148.1|2249704_2251144_-|hypothetical-protein
MAVSEVPIRAVLRRLNPSVAHKAAEKPNIDEIYAPLHHADALDPNRALVIGGRGVGKSFWAAVLAAKDGRAAAAKAYPLLGLNRLDVELGFHEGALGTGGIAPSPAALRSALVVAKDPVSIWRSVVLKALDRGAGPQKLNERVKWLENDPETFEDLLLSSDFDRSKRERPLLIVFDALDVLANDWETIRKLTRALAKLAHEMSARRAIRLKLFMRIDQFKDMQRKTFADFSKLQTAAVALEWRPVDLYGAVFTRLWRDVHANKVIRTLGRAVPIAVGGADLPRELKEDENKQDALFSAFAGEFMGANKKRGRTYTWVPKHLADAYGETSLRSFLIALREAAERASSKTGLAIDSNGLHAGVLKASDTRREELKEDHPWVEDALNALDGLTVPCEEHEIIARWQNAKVLQSIKKRINPERPAAPVQLELSEHDTKEQALLDALIELGVVERRAVNRINVPDIFRVAARMKRKGGVAPRKG
>NC_014313.1|WP_013216147.1|2249050_2249524_+|VOC-family-protein
MAKNTICVWYNKDAEEAARFYAETFPDSSIGSIHRAPSDFPSGKAGDVIVVNFTVIGIPCIGLNGGPAFQHSEAFSFQISTEDQAETDRYWNAIVGNGGRESECGWCKDKWGVNWQITPRVLTEALAIGGDEGRRAFEAMMTMRKIDVAAIEKARKG
>NC_014313.1|WP_013216146.1|2245521_2248653_+|excinuclease-ABC-subunit-UvrA
MKSPTKKLAARPGSELMKTIHVRGAREHNLKNVDLEIPRDALVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDHIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLLLLSPVVRGRKGEYRKEIAEWQKKGYQRLKINGTVYDIGDAPKLDKKYKHDIDVVVDRIVVKKDLGTRLADSFEQALKLSDGLAITEFVDRPLNSPSPRKRGEGQGEGQQQNEKQAAAPHPNPLPIKDGEREQRGVLQNKNETHERIMFSQRFACPVSGFTIDEIEPRLFSFNAPAGACPTCDGLGSELRFEPDLVVPDSTLSLEKGAIYPWAKTGVSSPYYEQTLESLAKHYKVSMKTPWERLPKHVQLALLYGSGDEDIVFTYWDGTRNYSTEKPFEGVIGNITRRFKETDSDWVREELSRYQAAHPCDACGGYRLKPQALAVKIGGKHIGEVGDLSIKAANEWFADVPKTFTKQQSEIATRILKEIRDRLKFLNDVGLQYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQKDNDRLLGTLKHLRDIGNTVIVVEHDEDAIMTADHIVDIGPGAGIHGGRVIAQGSPSDIMESAESLTGEYLSGVRYVPIPKKRRAPDPKKMLTVTGARSNNLKDVTASIPVGLLTCITGVSGGGKSTLLIDTIFKAVARKLNNAKDHPGEHDKITGIENFDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKTRGYEPGRFSFNVKGGRCEVCQGDGVIKIEMHFLPDVYVTCEECKGKRYNRETLAVTFKEKSIADVLDMTVEEGAEFFKAVPSIRDKLETLARVGLGYIKIGQQATTLSGGEAQRIKLSKELSRRATGRTLYILDEPTTGLHFHDVAKLLEVLHELADAGNTVVVIEHNLEVIKTADWIVDLGPEGGDGGGTIVAAGTPEDIVKVKESYTGQYLKPVLARRAAAGSTKESRDAHQKSESEGTAKKSKRQAAE
>NC_014313.1|WP_013216144.1|2243630_2244251_-|hypothetical-protein
MSDAPSLLNISHPAHPVNRTLTLVKLLVLAVSVAAAVPTARNLYFSWKNDVPFNQVDHRLAQAALLEKNFGCKIDYRALVTQGSARVEVGSCPKTGDISIRVNGPRGQVNYEWIAFDRLPKPLTLNTASLLDLIVPRALAAENTADDQQSFEVAQDMSVLCQAKSGDNIIRVVQSGGQCVRETVSIFRGSVEKSENVPCDKACPIK
>NC_014313.1|WP_013216143.1|2243182_2243578_+|GFA-family-protein
MSELHATGSCLCRGVIFEVAGALRPVLACHCSQCAKTSGNFAAMTSCPRENLKILSDETLRWFRSSETVERGFCTRCGGNLFWKQTGSSDIYITAGTLDTPTGLKISEHIFVASKSDYYDLTDGLPQKDEW
>NC_014313.1|WP_013216141.1|2242095_2242509_+|glyoxalase/bleomycin-resistance-protein/dioxygenase
MNAPAIGPSLIPGVYYDNLQSGVDWLISTLGFETKASYNGPSGEPEFAELAWGNGMIFVSRTPRTGPWAKAGKTCICLVANSHAVEAHYRQAVDAGARILRPLRRSTSPAFPDGVMGFDLEDPEGNLWTVSEYQPAR
>NC_014313.1|WP_013216140.1|2241650_2242019_+|YkgJ-family-cysteine-cluster-protein
MAYYNCLKCPGYCCSYPVIALNKRDVERLAKYFKVTFNTAKKRYTREGHGHKYLMRRKGDKHYGRICQFFDTKERRCTIYHGRPRACREYPGNGRCGYYDFLMHERRCQNDDTFVAITNHKD
>NC_014313.1|WP_013216139.1|2240755_2241277_-|single-stranded-DNA-binding-protein
MAGSVNKVILVGNVGKDPEIRRTQDGRPIANLSLATSETWRDKQTGERKERTEWHRVVIFSEPLCKVVEQYVKKGAKLYIEGALQTRKWTDQSGAEKYSTEVVLQGFSGTLTMLDGASGGRGASVGMQESGPDYGNDGGFGSSEPRRVSSKSGGGGGGSKGGFDKALDDEIPF
>NC_014313.1|WP_013216138.1|2239581_2240535_+|cation-diffusion-facilitator-family-transporter
MASGGSRSVVLIALGCNFGIAVAKFVAAAWTLSSAMLSEAIHSLVDTANQGLLLFGIARAKLPADEQHPFGYGKEIYFWSFIVAMVLFSLGAGVAIYEGVLKILDPHPLQNVEVLYAVLAVAMILEGFSLFKAVREFNARPEARNGFVEALRRSKDPSLFAIVLEDMAAMLGLTIALLGTLVAHLGGFDKADGVASILIGLLLAGVAAFMSIEIKSLIVGEAASRVVQAGIREIVTGEIGTGKPIRKINDLRTMHLGPNDVLVTASVDFQDGISARTVEDATGRLQAAIKSRFPEVRHLFIEGQSEETFKPTSVTLH
>NC_014313.1|WP_013216151.1|2253734_2254079_+|alkylphosphonate-utilization-protein
MSTLPPCPKCSSEFTYEDGNLYVCPECAHEWSPQAASAADDDDVKVYRDSAGNTLQDGDTVIVIKDLKLKGSSNVVKMGTKVKNIRLVDSDHDIDCKIEGIGPMSLKSEFVKKA
>NC_014313.1|WP_150103381.1|2254305_2254602_-|hypothetical-protein
MKRLAIIGFLALGTALGSSAASAAPAPAGLAGLSQAKTSGIELVQHRRGHYRHRHFRRGYGTRHYRHRNYRGWHRYSHRPYNWRSRGCVIVGPVWFCP
>NC_014313.1|WP_013216154.1|2254934_2255642_+|carbonic-anhydrase
MLTRRHFCCSGLIAGSLLTFDRAVAAGSCAVPTRNLQAALTPDEALANLKDGNARFLSGSTLNCDLLKQVHATSAGQFPSAVVIGCIDSRVPPELVFDQRIGDIFSARVAGNVVNDDIIGSCEFATKLSGARLIVVLGHSECGAVKGAIDGAELGELTQLLAKIKPAVTICKDAPGDHISKNTSFVQQVAVANAKLAADNLTKTSGVLRDLVDAKQLKIVAAMHDVSTGRVSFLE
>NC_014313.1|WP_013216155.1|2255667_2255946_-|hypothetical-protein
MKRIWTAAVSVGLAVAFGAPVAQADMISEVEGARAKERAGYYLNSQDREKLRRYGGNTDYRDSYARDFDYGRRGPGMRIYIGPDGYYGPGRY
>NC_014313.1|WP_013216156.1|2256074_2256362_-|hypothetical-protein
MSESTNTEKTLADLKREVAELSGLSLATGVILTQLLQKIASREMNPQGAAGQIVNNARAAIEGFTASQNSDPVMKARALEAVQQYEDQIRSVLRE
>NC_014313.1|WP_013216157.1|2256569_2257415_+|SDR-family-NAD(P)-dependent-oxidoreductase
MPTVLITGTSTGFGLVTTVELAKRGWNVIATMRDLGKRAELDRAVAAANVQNLVSVEQLDVTDPKSIDTAVARLDTQGRPLDAVVHNAGVAVGGAFEDLSDAHIRRVMEVNYFGVLALTQKLLPGFRARRRGRILIVSSESAFAGQPANSPYCASKWAVEGWAESVAYELAPFGIDIILIEPGAYRTNIWESSPRVLPETSAYRPLLRHLEVTIDAYVAKLARDPGEVAKAIANALDAPRPRFRTAVGPTAKFMHFARGKLPSRTVRKLFGRFFALQKVRW
>NC_014313.1|WP_013216158.1|2257466_2257754_+|hypothetical-protein
MTVDYWIGAGVLVATAATDAAYVMFTSSVVSRRALAAANWSSVWYMLSSFAVISYTNNWIYVGFAIVGSWIGAYLTLKYFHREPSHPPAPLQPKV
>NC_014313.1|WP_041922002.1|2257889_2259071_+|serine-hydrolase
MVHVAKVVALAGFVAFSNVAQADGTLSDLLEPIRAQYQLPALGAAIVKDGKIVAQGAVGVRVLGMDIPVTQDDRFHLGSDGKAMTATLAGMLIDEGKLRWDSTIGEVLGPVVPDLKPKFAAITLEQLLSHTSGIPSDTEDIMKLYFSSDAFDYTLTAYRLRMISEWNAAHDLSVPSGSAFQYSNLGYAIVGSMIEQASGKPWEVLITTRIFEPLGLKSAGLGPQATFGKYDAAVGHSVDADGKVTPRPWGLSADGPAVVGPAGIAHMNVADFATWAGWNAGEGKRGPALVKPETLKRLHQAHIKTEIPHPKPGTPKSGSYACGWGLSHFDWTDKPVLVHTGSNSMNLAMIVVDVEHDTGIVAVTNFPGEKADAALLAVSKALYTQYVKAGPAP
>NC_014313.1|WP_013216160.1|2259067_2260387_-|MFS-transporter
MHRAERLSRGAWAIVALLWLVATLNYLDRQLVVTMPGPIKADLGIGNERFGLLSSVFLWIYGICSPIAGYVADRFGKRPVIIASLLVWSAATFVTGMVTSFEGMLAARAMLGVSEAFYMPAAVALIVEYHRGPTRSRATGLHLSGVYAGSVLGGLGGAFAEMYGWRTGFLVMGAIGVAYAMVLMIFFPRPSDGASDEQARDATAASEALPSTPIAGAFKSLLTTRGFLFLLAMNLLNGAAYWPVRNWLPEFFRSELGVNQAWSGIYGPMTFNGAAFIGMLIASNISDWWSGWNERARALVPAIGFMIAAPCLFAVGAVDYIPIILACVLVAGMSQGFLDANLMPAACTVTDFRHRATAYGLLNFVGTTAGGVMTYVGGMLKEQNVPFGTTFQVASLLIFVAGLCLFAVKPARVGLSAPRAAGLLPPSRNEASEREPASP
>NC_014313.1|WP_169305508.1|2260413_2260644_-|hypothetical-protein
MSGVPAQAEAAADEPAGSIEQLLKSGWEVAGYASNADNRSTFILLKNSAQPYLVQCLAGYDVTRTPRVFQNCYKLR

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Crispr_ID: NC_014313_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014313_3

2256456-2256530

Orphan

Consensus_repeat	Method
CGCTTCGCAGAGCCGGCCGCAAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014313_3

>merge|NC_014313|3|2256456-2256530|CRISPRCasFinder
CGCTTCGCAGAGCCGGCCGCAAGGTAAGTTCTTCGGGCACCTTGCGACTCCGCTTCGCGGAGCCGGCCGCAAGGT

>NC_014313|3|3|2256456-2256530|CRISPRCasFinder
CGCTTCGCAGAGCCGGCCGCAAGGT	AAGTTCTTCGGGCACCTTGCGACTC
CGCTTCGCGGAGCCGGCCGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014313.1\|WP_013216155.1\|2255667_2255946_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239656
NC_014313.1\|WP_013216154.1\|2254934_2255642_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|237927
NC_014313.1\|WP_150103381.1\|2254305_2254602_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215248
NC_014313.1\|WP_013216158.1\|2257466_2257754_+\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216163.1\|2261115_2262093_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|237057
NC_014313.1\|WP_013216165.1\|2263209_2263485_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216151.1\|2253734_2254079_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NC_014313.1\|WP_013216149.1\|2251130_2252477_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223531
NC_014313.1\|WP_013216166.1\|2263579_2263981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215598
NC_014313.1\|WP_169305508.1\|2260413_2260644_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216148.1\|2249704_2251144_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216156.1\|2256074_2256362_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216164.1\|2262330_2263200_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
NC_014313.1\|WP_013216146.1\|2245521_2248653_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_014313.1\|WP_013216157.1\|2256569_2257415_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180744
NC_014313.1\|WP_013216160.1\|2259067_2260387_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_014313.1\|WP_013216144.1\|2243630_2244251_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_041922002.1\|2257889_2259071_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_014313.1\|WP_013216147.1\|2249050_2249524_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226383
NC_014313.1\|WP_013216167.1\|2264377_2264659_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014313.1\|WP_013216155.1\|2255667_2255946_-\|hypothetical-protein	gnl\|CDD\|239656	cd03684, ClC_3_like, ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles.	0.00927967
NC_014313.1\|WP_013216154.1\|2254934_2255642_+\|carbonic-anhydrase	gnl\|CDD\|237927	PRK15219, PRK15219, carbonic anhydrase; Provisional.	6.29008e-76
NC_014313.1\|WP_150103381.1\|2254305_2254602_-\|hypothetical-protein	gnl\|CDD\|215248	PLN02451, PLN02451, homoserine kinase.	0.00143419
NC_014313.1\|WP_013216163.1\|2261115_2262093_-\|TonB-family-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	2.22645e-08
NC_014313.1\|WP_041922002.1\|2257889_2259071_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.99264e-43
NC_014313.1\|WP_013216149.1\|2251130_2252477_-\|hypothetical-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	6.76563e-06
NC_014313.1\|WP_013216166.1\|2263579_2263981_-\|hypothetical-protein	gnl\|CDD\|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	2.47321e-07
NC_014313.1\|WP_013216164.1\|2262330_2263200_+\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	1.23759e-74
NC_014313.1\|WP_013216151.1\|2253734_2254079_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	6.11474e-63
NC_014313.1\|WP_013216146.1\|2245521_2248653_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_014313.1\|WP_013216157.1\|2256569_2257415_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180744	PRK06914, PRK06914, SDR family oxidoreductase.	5.33249e-87
NC_014313.1\|WP_013216160.1\|2259067_2260387_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.99029e-47
NC_014313.1\|WP_013216147.1\|2249050_2249524_+\|VOC-family-protein	gnl\|CDD\|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	2.04043e-76

>NC_014313.1|WP_013216156.1|2256074_2256362_-|hypothetical-protein
MSESTNTEKTLADLKREVAELSGLSLATGVILTQLLQKIASREMNPQGAAGQIVNNARAAIEGFTASQNSDPVMKARALEAVQQYEDQIRSVLRE
>NC_014313.1|WP_013216155.1|2255667_2255946_-|hypothetical-protein
MKRIWTAAVSVGLAVAFGAPVAQADMISEVEGARAKERAGYYLNSQDREKLRRYGGNTDYRDSYARDFDYGRRGPGMRIYIGPDGYYGPGRY
>NC_014313.1|WP_013216154.1|2254934_2255642_+|carbonic-anhydrase
MLTRRHFCCSGLIAGSLLTFDRAVAAGSCAVPTRNLQAALTPDEALANLKDGNARFLSGSTLNCDLLKQVHATSAGQFPSAVVIGCIDSRVPPELVFDQRIGDIFSARVAGNVVNDDIIGSCEFATKLSGARLIVVLGHSECGAVKGAIDGAELGELTQLLAKIKPAVTICKDAPGDHISKNTSFVQQVAVANAKLAADNLTKTSGVLRDLVDAKQLKIVAAMHDVSTGRVSFLE
>NC_014313.1|WP_150103381.1|2254305_2254602_-|hypothetical-protein
MKRLAIIGFLALGTALGSSAASAAPAPAGLAGLSQAKTSGIELVQHRRGHYRHRHFRRGYGTRHYRHRNYRGWHRYSHRPYNWRSRGCVIVGPVWFCP
>NC_014313.1|WP_013216151.1|2253734_2254079_+|alkylphosphonate-utilization-protein
MSTLPPCPKCSSEFTYEDGNLYVCPECAHEWSPQAASAADDDDVKVYRDSAGNTLQDGDTVIVIKDLKLKGSSNVVKMGTKVKNIRLVDSDHDIDCKIEGIGPMSLKSEFVKKA
>NC_014313.1|WP_013216149.1|2251130_2252477_-|hypothetical-protein
MTPSSNHHSTVARFDDALPTFVRLALSEFGEEFLGRSLILRDANGRLTLIIRGDVDQSTRKRFDTAAEASLGAYVSGPTATPQEIFDDSLQSNEGAIAERVLVDGSYVAVQLVDRRIVGQDWNQPHFTSSKPPLAVFFSVKGGVGRTTALAVAAAAFSHQSKNILVIDLDLEAPGLASVLLPIENLPKYGALDYFVENGLNGVDDGFLEDCISPSPLTAGRGLVEIVPAVGRIGRKNPQNILPKLGRAFLDDPNERGAMNSFGDQVRELVKAFTARRRYDAVFVDARAGLSESTSAAIMGLGGEILMFGVDTPQTFDGYSYLLAHLGRFAKEAKSIDDWRSRLRMIHAKADRGVEALSHFRDQAQEVFSAYIYEEASPGDFDAFNFDLDDPDAPHFAWPIPYDAAYAEFDPTARREQLTREFFDRTFGPFVNRLAEVLFGLESTDGGQ
>NC_014313.1|WP_013216148.1|2249704_2251144_-|hypothetical-protein
MAVSEVPIRAVLRRLNPSVAHKAAEKPNIDEIYAPLHHADALDPNRALVIGGRGVGKSFWAAVLAAKDGRAAAAKAYPLLGLNRLDVELGFHEGALGTGGIAPSPAALRSALVVAKDPVSIWRSVVLKALDRGAGPQKLNERVKWLENDPETFEDLLLSSDFDRSKRERPLLIVFDALDVLANDWETIRKLTRALAKLAHEMSARRAIRLKLFMRIDQFKDMQRKTFADFSKLQTAAVALEWRPVDLYGAVFTRLWRDVHANKVIRTLGRAVPIAVGGADLPRELKEDENKQDALFSAFAGEFMGANKKRGRTYTWVPKHLADAYGETSLRSFLIALREAAERASSKTGLAIDSNGLHAGVLKASDTRREELKEDHPWVEDALNALDGLTVPCEEHEIIARWQNAKVLQSIKKRINPERPAAPVQLELSEHDTKEQALLDALIELGVVERRAVNRINVPDIFRVAARMKRKGGVAPRKG
>NC_014313.1|WP_013216147.1|2249050_2249524_+|VOC-family-protein
MAKNTICVWYNKDAEEAARFYAETFPDSSIGSIHRAPSDFPSGKAGDVIVVNFTVIGIPCIGLNGGPAFQHSEAFSFQISTEDQAETDRYWNAIVGNGGRESECGWCKDKWGVNWQITPRVLTEALAIGGDEGRRAFEAMMTMRKIDVAAIEKARKG
>NC_014313.1|WP_013216146.1|2245521_2248653_+|excinuclease-ABC-subunit-UvrA
MKSPTKKLAARPGSELMKTIHVRGAREHNLKNVDLEIPRDALVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDHIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYLRLLFARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLLLLSPVVRGRKGEYRKEIAEWQKKGYQRLKINGTVYDIGDAPKLDKKYKHDIDVVVDRIVVKKDLGTRLADSFEQALKLSDGLAITEFVDRPLNSPSPRKRGEGQGEGQQQNEKQAAAPHPNPLPIKDGEREQRGVLQNKNETHERIMFSQRFACPVSGFTIDEIEPRLFSFNAPAGACPTCDGLGSELRFEPDLVVPDSTLSLEKGAIYPWAKTGVSSPYYEQTLESLAKHYKVSMKTPWERLPKHVQLALLYGSGDEDIVFTYWDGTRNYSTEKPFEGVIGNITRRFKETDSDWVREELSRYQAAHPCDACGGYRLKPQALAVKIGGKHIGEVGDLSIKAANEWFADVPKTFTKQQSEIATRILKEIRDRLKFLNDVGLQYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQKDNDRLLGTLKHLRDIGNTVIVVEHDEDAIMTADHIVDIGPGAGIHGGRVIAQGSPSDIMESAESLTGEYLSGVRYVPIPKKRRAPDPKKMLTVTGARSNNLKDVTASIPVGLLTCITGVSGGGKSTLLIDTIFKAVARKLNNAKDHPGEHDKITGIENFDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKTRGYEPGRFSFNVKGGRCEVCQGDGVIKIEMHFLPDVYVTCEECKGKRYNRETLAVTFKEKSIADVLDMTVEEGAEFFKAVPSIRDKLETLARVGLGYIKIGQQATTLSGGEAQRIKLSKELSRRATGRTLYILDEPTTGLHFHDVAKLLEVLHELADAGNTVVVIEHNLEVIKTADWIVDLGPEGGDGGGTIVAAGTPEDIVKVKESYTGQYLKPVLARRAAAGSTKESRDAHQKSESEGTAKKSKRQAAE
>NC_014313.1|WP_013216144.1|2243630_2244251_-|hypothetical-protein
MSDAPSLLNISHPAHPVNRTLTLVKLLVLAVSVAAAVPTARNLYFSWKNDVPFNQVDHRLAQAALLEKNFGCKIDYRALVTQGSARVEVGSCPKTGDISIRVNGPRGQVNYEWIAFDRLPKPLTLNTASLLDLIVPRALAAENTADDQQSFEVAQDMSVLCQAKSGDNIIRVVQSGGQCVRETVSIFRGSVEKSENVPCDKACPIK
>NC_014313.1|WP_013216157.1|2256569_2257415_+|SDR-family-NAD(P)-dependent-oxidoreductase
MPTVLITGTSTGFGLVTTVELAKRGWNVIATMRDLGKRAELDRAVAAANVQNLVSVEQLDVTDPKSIDTAVARLDTQGRPLDAVVHNAGVAVGGAFEDLSDAHIRRVMEVNYFGVLALTQKLLPGFRARRRGRILIVSSESAFAGQPANSPYCASKWAVEGWAESVAYELAPFGIDIILIEPGAYRTNIWESSPRVLPETSAYRPLLRHLEVTIDAYVAKLARDPGEVAKAIANALDAPRPRFRTAVGPTAKFMHFARGKLPSRTVRKLFGRFFALQKVRW
>NC_014313.1|WP_013216158.1|2257466_2257754_+|hypothetical-protein
MTVDYWIGAGVLVATAATDAAYVMFTSSVVSRRALAAANWSSVWYMLSSFAVISYTNNWIYVGFAIVGSWIGAYLTLKYFHREPSHPPAPLQPKV
>NC_014313.1|WP_041922002.1|2257889_2259071_+|serine-hydrolase
MVHVAKVVALAGFVAFSNVAQADGTLSDLLEPIRAQYQLPALGAAIVKDGKIVAQGAVGVRVLGMDIPVTQDDRFHLGSDGKAMTATLAGMLIDEGKLRWDSTIGEVLGPVVPDLKPKFAAITLEQLLSHTSGIPSDTEDIMKLYFSSDAFDYTLTAYRLRMISEWNAAHDLSVPSGSAFQYSNLGYAIVGSMIEQASGKPWEVLITTRIFEPLGLKSAGLGPQATFGKYDAAVGHSVDADGKVTPRPWGLSADGPAVVGPAGIAHMNVADFATWAGWNAGEGKRGPALVKPETLKRLHQAHIKTEIPHPKPGTPKSGSYACGWGLSHFDWTDKPVLVHTGSNSMNLAMIVVDVEHDTGIVAVTNFPGEKADAALLAVSKALYTQYVKAGPAP
>NC_014313.1|WP_013216160.1|2259067_2260387_-|MFS-transporter
MHRAERLSRGAWAIVALLWLVATLNYLDRQLVVTMPGPIKADLGIGNERFGLLSSVFLWIYGICSPIAGYVADRFGKRPVIIASLLVWSAATFVTGMVTSFEGMLAARAMLGVSEAFYMPAAVALIVEYHRGPTRSRATGLHLSGVYAGSVLGGLGGAFAEMYGWRTGFLVMGAIGVAYAMVLMIFFPRPSDGASDEQARDATAASEALPSTPIAGAFKSLLTTRGFLFLLAMNLLNGAAYWPVRNWLPEFFRSELGVNQAWSGIYGPMTFNGAAFIGMLIASNISDWWSGWNERARALVPAIGFMIAAPCLFAVGAVDYIPIILACVLVAGMSQGFLDANLMPAACTVTDFRHRATAYGLLNFVGTTAGGVMTYVGGMLKEQNVPFGTTFQVASLLIFVAGLCLFAVKPARVGLSAPRAAGLLPPSRNEASEREPASP
>NC_014313.1|WP_169305508.1|2260413_2260644_-|hypothetical-protein
MSGVPAQAEAAADEPAGSIEQLLKSGWEVAGYASNADNRSTFILLKNSAQPYLVQCLAGYDVTRTPRVFQNCYKLR
>NC_014313.1|WP_013216163.1|2261115_2262093_-|TonB-family-protein
MDQTADLTTAGFARWGESNKRERNFWIALACAAVLHASLFIGAVNSKTKRLGAENGADNAISVSLVTEADLESRATVAEEPQPPPGPPPQPAQQPQPQQPPPQPEAKQEPQPPEPEPPKPEQQETKAEPAPQPEDVKPAEKPELKESKQEDPDPIDDASDLLSLQNENPANVKSAEKPKPKPKAETETPKAAPKPAPKKPQKKVASLDLSTPKNLMQPSFGGGRSAGLQRPPGITRSGLNDAFARGVIRALQQTMPQLVDINGRVTIRILLSETGNVVEVRLLSGAKNSTLNQDVVFAAQQTSYPIPPTGSNLADRTFMVTYIYD
>NC_014313.1|WP_013216164.1|2262330_2263200_+|DUF72-domain-containing-protein
MPRRHNDPSHAPEKSGKSAKNGKIRAGIGGWTFEPWRGVFYPDDLAQAKELGYASRQLPVIEINGTYYSTQKPQTFARWAAETPDEFVFTLKGPRYATNRRELGGAGESITRFLESGVTELGHKLGPLLWQFAPTKKFDEADFGAFLDLLPEKFNGRKLQHAVEVRHDSFSTPAFVDLARKKSVAIVFADHAKYPAIADVTGDFVYARLQTGKDDIPTAYTPKALNEWVARAKVWAEGGVPDDLHVAEPDAKLKQKARDVFVFFIHEGKVRAPHAAMAFMERLTRKPRA
>NC_014313.1|WP_013216165.1|2263209_2263485_-|hypothetical-protein
MVTTVRRFGFCTMVAALGFCSGAAQAQTLFEVEHARGNYRAGLVSEYDADLIRTWGAPSGNYPGARYLDARQRETRAARTQRARAKRTTGQ
>NC_014313.1|WP_013216166.1|2263579_2263981_-|hypothetical-protein
MARTHLILGGLTAALMSLSAPAIAAPGGLATATPAAHNQTTLVRGGWGHGGGGFGHGGGGWGHGGGGWGHGGGGWGHGGWHGGYGHRRGYPYFAYWGGYPYFNDYYYDDYGYDYGYDTCYYSRRLRARVCPEY
>NC_014313.1|WP_013216167.1|2264377_2264659_+|hypothetical-protein
MSDRTQLAIGRNSISVPRLTKRAVEAGVATALTSCVALLILVLNNVLTGRGGWVNGFDVWYSYMRQPAILGTMILTALTTSLFLAWQRDRGAR

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Crispr_ID: NC_014313_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014313_4

2611083-2611159

Orphan

Consensus_repeat	Method
CGGGGAGCCGGCCGCCAGCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014313_4

>merge|NC_014313|4|2611083-2611159|CRISPRCasFinder
CGGGGAGCCGGCCGCCAGCGCGGGTGTCTTTGATTGGCGCTGGCGACTCTCCTTCGGAGAGCCGGCCGCCAGCGCGG

>NC_014313|4|4|2611083-2611159|CRISPRCasFinder
CGGGGAGCCGGCCGCCAGCGCGG	GTGTCTTTGATTGGCGCTGGCGACTCTCCTT
CGGAGAGCCGGCCGCCAGCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014313.1\|WP_013216511.1\|2609838_2610492_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216517.1\|2617151_2617610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259885
NC_014313.1\|WP_013216521.1\|2620255_2620681_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216507.1\|2604435_2604732_-\|DUF4236-domain-containing-protein	unknown	unknown	gnl\|CDD\|379423
NC_014313.1\|WP_013216516.1\|2614952_2616860_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NC_014313.1\|WP_013216520.1\|2619424_2620090_-\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|369534
NC_014313.1\|WP_013216505.1\|2601100_2602936_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|132844
NC_014313.1\|WP_013216506.1\|2603073_2604423_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132847
NC_014313.1\|WP_013216513.1\|2611220_2611496_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216514.1\|2611571_2612510_-\|DUF817-domain-containing-protein	unknown	unknown	gnl\|CDD\|377545
NC_014313.1\|WP_013216515.1\|2612713_2614888_+\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NC_014313.1\|WP_013216509.1\|2606516_2608397_+\|methylmalonyl-CoA-mutase-small-subunit	unknown	unknown	gnl\|CDD\|239649
NC_014313.1\|WP_013216504.1\|2600423_2601014_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_014313.1\|WP_150103397.1\|2608482_2609850_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238506
NC_014313.1\|WP_013216522.1\|2620839_2622462_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|310523
NC_014313.1\|WP_013216518.1\|2617619_2618561_-\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NC_014313.1\|WP_041921657.1\|2599610_2599940_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NC_014313.1\|WP_013216519.1\|2618878_2619307_+\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013216508.1\|2604856_2606293_-\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NC_014313.1\|WP_013216512.1\|2610773_2610974_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014313.1\|WP_013216517.1\|2617151_2617610_+\|hypothetical-protein	gnl\|CDD\|259885	cd04223, N2OR_C, The C-terminal cupredoxin domain of Nitrous-oxide reductase. Nitrous-oxide reductase participates in nitrogen metabolism and catalyzes the last step in dissimilatory nitrate reduction, the two-electron reduction of N2O to N2. It contains copper ions as cofactors in the form of a binuclear CuA center at the site of electron entry and a tetranuclear CuZ centre at the active site. The C-terminus of Nitrous-oxide reductase is a cupredoxin domain.	4.22097e-08
NC_014313.1\|WP_013216518.1\|2617619_2618561_-\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	1.95041e-83
NC_014313.1\|WP_013216507.1\|2604435_2604732_-\|DUF4236-domain-containing-protein	gnl\|CDD\|379423	pfam14020, DUF4236, Protein of unknown function (DUF4236). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 69 and 402 amino acids in length.	6.1399e-21
NC_014313.1\|WP_013216516.1\|2614952_2616860_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	5.28385e-150
NC_014313.1\|WP_013216520.1\|2619424_2620090_-\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|369534	pfam07813, LTXXQ, LTXXQ motif family protein. This protein family includes two copies of a five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP. This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy may indicate that these two proteins are functionally related.	2.6839e-08
NC_014313.1\|WP_013216505.1\|2601100_2602936_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|132844	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE hydrolyzes sn-1 esters in lysophosphatidylcholine and lysophosphatidic acid, but shows no lipase activity with substrates like triacylglycerols (TG), cholesteryl esters, retinyl esters (RE), phosphatidylcholine (PC), or monoacylglycerol (MG). This family includes subfamily of PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.	1.8395e-54
NC_014313.1\|WP_013216506.1\|2603073_2604423_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	4.42584e-25
NC_014313.1\|WP_013216514.1\|2611571_2612510_-\|DUF817-domain-containing-protein	gnl\|CDD\|377545	pfam05675, DUF817, Protein of unknown function (DUF817). This family consists of several bacterial proteins of unknown function.	3.94412e-131
NC_014313.1\|WP_013216515.1\|2612713_2614888_+\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NC_014313.1\|WP_013216509.1\|2606516_2608397_+\|methylmalonyl-CoA-mutase-small-subunit	gnl\|CDD\|239649	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers. For P. shermanni MCM, it is known that only the alpha subunit binds coenzyme B12 and substrates. The role of the beta subunit is unclear. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with MeaB; MeaB may protect MCM from irreversible inactivation. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Examples include P. shermanni MCM during propionic acid fermentation and Streptomyces MCM in polyketide biosynthesis.	6.5847e-149
NC_014313.1\|WP_013216504.1\|2600423_2601014_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	5.82432e-88
NC_014313.1\|WP_150103397.1\|2608482_2609850_+\|chloride-channel-protein	gnl\|CDD\|238506	cd01034, EriC_like, ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	3.59118e-127
NC_014313.1\|WP_013216522.1\|2620839_2622462_-\|alpha/beta-hydrolase	gnl\|CDD\|310523	pfam05990, DUF900, Alpha/beta hydrolase of unknown function (DUF900). This family consists of several hypothetical proteins of unknown function mostly found in Rhizobium species. Members of this family have an alpha/beta hydrolase fold.	7.68849e-58
NC_014313.1\|WP_041921657.1\|2599610_2599940_-\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	2.65661e-19
NC_014313.1\|WP_013216508.1\|2604856_2606293_-\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0

>NC_014313.1|WP_013216512.1|2610773_2610974_-|hypothetical-protein
MSCIIAASATAAVTTAATVALATLPDAQALLAPLLDGNEYALSTVSILASAPILAVMTVLAVSGRE
>NC_014313.1|WP_013216511.1|2609838_2610492_-|hypothetical-protein
MRLNAVALVFVGLASVTFPIHAEQKYTPQAQPVLAGSGMHSAIRLPDYVPVLNYDQFLLASRGDNFGNDGELSSATRSAAEALSAKFAAPLEGSHVAAAPDPRSADSLDVSSDPKQLIKVAELLQQPDLTDPAKVARAAIRAETQRVEIPRSVARNAERASRRERASHSRVARRGNARQQRNRVATIEPQQKSTGISATLDRLVGFGSFTPDHRLTP
>NC_014313.1|WP_150103397.1|2608482_2609850_+|chloride-channel-protein
MGVRGLSRTRRLRGSMRRYRYVSLSRRVWMRRAVFIAGALLVGLAAVGFAGIANSAQDLYSYILTTYPMLPLVMTPACFAVLAYVTMRWFPAAAGSGIPQVIAARKSSDQLHVRALLGWQTTVAKIVMTALALAAGASVGREGPTVQVGASVMFAVATVAGLGRRNGFVLAGSAAGIAAAFNAPIAGILFAIEELAKAFAGRINDIVIGSVVIAGAVSWAILGNYDYFGRVDADIVRMQDWVAVPICALFGGVLGGLFSVALVSLLRKPFGIVAVIKRQPIIFAALCGLLVAILSIATAGYASGNGYAETRASLIDGQAIPWWFGLAKLGSTLLSSASGIPGGLFSPSLAVGAGIGSMITPIFTFADPRVIMLLMTVGYFAGVVQSPLTAVVIVMEMTSDKNMVIPLMATSLFAAGISRLISREPIYHALARGYYASVFRIHGTPDVSPGSPSGR
>NC_014313.1|WP_013216509.1|2606516_2608397_+|methylmalonyl-CoA-mutase-small-subunit
MSRSPSETNETHLAEGFPAAKVEQWRALVDKALKGADFEKRLVRRTADGLKIDPLYTRADALASAAEALPGQAPFTRGTKAVSGGWDIRTFHIESDPKAANTAILEDLAGGVTSIGLQVGFGNGLAATKEALGAALDGVLLDVCPIVLVAGDAFFDAALALTGVWDARGVKAAERQGSFGADPIGTLAMTGRLSESLDTSLARAVALMKITAASPRVQAMTADGVVAHVAGASEAQELAVMLSTLVAYLRAAEKGGLTPAEALPKINVSLAADIDEFSTIAKLRAARRLIWRVADACGAGDAAASVTINCPTSYRMMAKRDPWTNILRTTIACTGAALGGADAIVVLPFTFALGKPDAFARRVARNIQIVCQEESHLGRVTDPAGGSWYVENLTEDMAKKAWAIFQDIEGRGGMAAALTSGYIQDIIAKTADARAKDIATLRQELTGVSAFPLLGDDGVHAEAWPAVAAQSNKAAVEVKPLKPHRLGEAFEALRDAADAHGGFKVFAASLGEIADHNIRTTWIKNYLAAGGITALISDGYKTPEDAAAAFKASGATAACICSSDAVNAALAQPTAEALKKAGAKLVLMAGRPGDAEAALKAAGVDQFLFAGADAVATLKGLQEHLR
>NC_014313.1|WP_013216508.1|2604856_2606293_-|DUF853-family-protein
MTGKSGTPGSQSAIADPRDYVQDGAVLIGVSKSGHEPAAETLELSLANRHGLVTGATGTGKTVTLQVLAEGFSAAGVPVFAADIKGDLSGIAMTGTQAPKLVARAAEIGINNYGNAAFPTVFWDIFGDAGHPVRATVQEMGPLLLSRLMELTEPQEGVLNIAFRWAADEREAGDRNMTILDLKDLRSVIDEMGKRASEIRSKYGHVATSTVGVIQRRLLVLEEQAADKFFGEPALDIMDFIKTTPDGRGVVNILAAEKLMDTPRLYSTFLLWLLTELFEKLPEVGDLDKPKLVFLFDEAHLLFNEAPKAVLEQIERVTRLIRSKGVGVYYVTQSPADVPDRVSAQLGNRIQHALRAFTPKEQKAIRAAAQTFRSNPAIDTERAIQELKVGEALVSLLHGKGEPSMVERTLIRPPMSRVGPLTPEERASLVEADKANFSKYRQTLDRESAYERLQSRNTFGGQIKEKLSKFPNIFGFKK
>NC_014313.1|WP_013216507.1|2604435_2604732_-|DUF4236-domain-containing-protein
MGYFRFRKTFSILPGVRINLSKTGVSSSIGGNGATVNVGKNGPMVTLGIPGTGLSYRTPVGLALVLILLAVAAIAGLAYLFAPETVRTLLHWWQPRWF
>NC_014313.1|WP_013216506.1|2603073_2604423_+|patatin-like-phospholipase-family-protein
MYRARLCVGVVLAFSLCLTGCAATIPRNGISDARLALEAEIPNMHGVRFWADEVPKNPIAEIKRRTAHMPPIARSAKRIDGRPLIETLALSGGGSDGAFGAGVLAGWSKRGDRPEFEIVTGVSAGAIIAPFAYLGPSEDEKLKAIWTQYKQNEVITTQLLPALFGGPALADTTPLQELIAHYVDREFLDRIAAQYRRGRILMVLTTNLDAQRPVVWNMGEIALSRSPRAIELFRSVILASAAIPAAFPPVKIEVEADGKMYDELHVDGGTTREVFVLPAEAPLQAFDSLYPKPPIRRFFIIKNGKASPEQEVVKATTLQIASRAISTLIKSQNQGELYHIYRIALDAGADFNFMSVPASFDFKTTQIYDPKYQTALYEEGIREGRRNIWLKSPPGQAPVGVRYQSNAPAKARIPELGAAPSLAKPQASKASANKVAANSGWQSSVQSAP
>NC_014313.1|WP_013216505.1|2601100_2602936_+|cyclic-nucleotide-binding-domain-containing-protein
MSFKPFSLSSVTTFRDLPPNVLRSLEERLQPVSVRHGDCVVRQGEIADALHVVVSGRFAVEIDGHDEPVAEITHGSTIGEIAFFTGGARTATVRAIRDGVVVRLTRDDFNSISEASPAIWAALTATLAERLAMQTRLHADLRRDIGVNVPRPRPRTLAVVGCADVQIDPQFLRDFASIAAARPGTVIATRETLRDVLGRDPRDDEDLTAALNELETRYSTVVFIADREPTAWSAKCIRQADELLLVAASSDDPIGCAVPLGALEAFALTLHPPHSRRMAIVHRRKGIVQGTRHWLVGREPAMHHHVALGDSEDVARLWRFIVGEALGFVACGGGAYCAAHVGIYQAFREAGVGFDLIGGTSGGAAMAAAIAQDADPLDIDAGVHRMFIEGRAMARYTVPRYSLLDHAHFDHHLEKEYGAVRIEDLWKPYFAVSADLTAYEPEVHRRGSLWQAIRASAAIPGLLPPFYTDDGRMLVDGSVIANVPIDTMHRLKRGPNVVVSFDTGDRQQFPVDYASLPKRRELIWQLLNPRSTGRTPHAPSAATVLVRSLMANRGHFERHLTADDWLLVPPTPPGMGALDWRRHSEIMTGAYTYTRNAIETRGLPLFLSSGH
>NC_014313.1|WP_013216504.1|2600423_2601014_+|superoxide-dismutase
MTLKLPDLPYAYDALTPFMSAETLEFHHDKHHLAYVDNGNKLLAGSKYEGQSLEDICKNAYADKNAGIINNVGQHWNHLHFWQWMKKGGGGKKLPGKIEKLVDGYGGFDKVRGDFIEAGKGQFGSGWAWLVIKDGKLNVQKTPNGENPLMHGAKPILGVDVWEHSYYIDYRNARPKYLEAWFDNLVNWEHVEALAG
>NC_014313.1|WP_041921657.1|2599610_2599940_-|H-NS-histone-family-protein
MAAVNVDKLSLKELIDLDGRVKKALAMARDRERMEIKKRVADLAETHGFSVAELFGGARGRGPGKTKSVGVAKYANPENKLDTWTGRGRKPNWVVERLRKGAKLADFEI
>NC_014313.1|WP_013216513.1|2611220_2611496_-|hypothetical-protein
MTNAVYFGVFGFAVAAFSGATMCLPGDEPTPDLLASQARDQGFACSQAKSAEREVKASRPNEAVWILKCENDTYRMIVIPDMAAKIEKLQK
>NC_014313.1|WP_013216514.1|2611571_2612510_-|DUF817-domain-containing-protein
MQRKVANETRRDGAAGSAARLWAPLARFITWESNLGERAEARGPAAHFAYEFIRFGVKQAWACLFGALMLALLVATFLFYPKGAALARYDFLVIAAVAIQVLMLAFRLETIEEAKVILIFHVVGTIMEIFKTSVGSWIYPEPSLLRIGGVPLFTGFMYAAIGSYIARCWRLFDFRFTRHPPVWVLGLLSAAIYINFFAHHYTWDVRPVLFAAALLLIGPCTIYYKIWKTHRHMPLLLGLVLVALFIWFAENIGTFTAAWAYPHQKHGWQIVGIGKLGSWFLLMLISYTLVAAINRPQPMLPRDDQDTEFLPR
>NC_014313.1|WP_013216515.1|2612713_2614888_+|methylmalonyl-CoA-mutase
MTVIPNFADVPFEAPAASQAGKSSAAPEAPVWDTPEGIPVKPVFTGADTAELDFIDTLPGIVPFLRGPYPAMYALQPWTIRQYAGFSTAEDSNAFYRRNIAAGQKGLSIAFDLATHRGYDSDHPRVKGDVGMAGVAIDSIFDMRVLFDAIPLQDMTVSMTMNGAVLPILALFIVAGEEQGVPPEKLAGTIQNDILKEFMVRNTYIYPPAPSMRIVSDIFAYTSAKMPKFNSISISGYHMQEAGATADLELGYTIADGIEYARAGVAGGLDIDAFAPRLSFFWAIGMNYFMEIAKMRAARLLWAKLIKEEFKPKSDKSLSLRTHSQTSGWSLTAQDIFNNATRTCLEAMAATQGHTQSLHTNGLDEAIALPTDFSARIARNTQLLLQQESGTTRTIDPWGGSHYVERLTYDLAKKALSHIEEVEEQGGMAKAIAAGIPKLRIEEAAARTQARIDSGRQTITGVNKFQIKGDKEINFLKVDNQAVREAQLAKLKRLREERNESDVQAALNALTEGAKGNANLLDLAVKAARQKATVGEISYALEKVFTRHKAEIRAISGVYKKEAAMNPSVDRVKTLVEAFDKNDGRRPRILIAKLGQDGHDRGQKVIASAFADLGFDVDIGPLFATADEAARQAVENDVHVVGVSTMTAGHLTLVPELKTALDKEGRGDIMIVVGGVIPPADYDALYAAGAKAVFGPGTNIPEAAADLVEKLNAQLGYADKAAAE
>NC_014313.1|WP_013216516.1|2614952_2616860_-|DEAD/DEAH-box-helicase
MTIENFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQINALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITAIERMMKQKLEVIADVGGEALPMPERRQHHRAETGPRRDGDRQHHHAGGRRDGREGGQRGERPARPHRNGDERANASPARNGENRRPYEPLAIAADGDAVFGVGERRESRGDGHRPNRAPGDRPHRGERRHHERNGGGEQRANGHPAREGEPAKREQAHRDHGDRPHRGERQHHEHKAGGEARGSGHRSATGQRSRDGQPARHADSSRSQNAHSGHRHEGGHASERRNDEHRQSPARQSERGDKRPAWSGTQAPKFMKPRRDDGGRGRQSRNPAS
>NC_014313.1|WP_013216517.1|2617151_2617610_+|hypothetical-protein
MMMRHLFLPLAAAVVGYAGVTAAAAASKRVFTIAAVEPKGTAEVAKEPFPAAALPDGGGLQLKKPGDDGRWQVSAYLWSAPQYHVKAGDEVTLRFVGLNGSEHPTTIEGYDKSFTLKRGEVTDISFVADKPGVFQIICSKHQPTMVSELIVE
>NC_014313.1|WP_013216518.1|2617619_2618561_-|prolyl-aminopeptidase
MKTLPEAFRPFDARMLHVGDGHWIYVEEVGLRGGRPIAFLHGGPGSGSQHLHRTLFDPARDHIFLIDQRGAGRSHPYLSCDANTTAHLVSDLEAIREHFDIAKWLLVGGSWGSTLALAYAEKHPERVSGLVLRAIFLGTAEEVEWAFLEGPKIFRPELYADFRDWLPAAERSEPLQAYVNRLCNPDPNVHTLPALRWFAYERALSEIAAKPGKLPAEVDAASRLPPTPFVEAHYIRNNFFLEPGQLLRDARNLAGIPGHIVQGRYDLLCPPRTAHALASAWPDARLEFIETAGHAMSDPGVMDAMRRAISEIS
>NC_014313.1|WP_013216519.1|2618878_2619307_+|hypothetical-protein
MVRTAVSQMLRAVAAGGFALAVGVSCVNVSSANAEPASLTGSWSGNGSISFSSGSKERARCRARFAKTGASSYAMSATCATPSAKVDQSATLYKSGANSYTGSFFNQQYNTGGSIRITVSGRTQSVRLSGEAGSAIFKLRKL
>NC_014313.1|WP_013216520.1|2619424_2620090_-|Spy/CpxP-family-protein-refolding-chaperone
MNKLSRGAWLAIAAVAAVPATVAIAKSVDRAGGWHNMTPETRTRLEDGRIAMAKAALQLNADQEKLWAPVESAVRDGFKAREAKRAEWAKKREERRSDKSDGASKRPDLAERYERMSNNLAERADRFKTFSTAFKPFYASLSDEQKDVLRPLMRQLSPGFGHSGGHGPHWAVGGDWGPGGPGHHGHHGWQGGPDGKRGPGMQNDTPDNDGGPAPSEPDDKG
>NC_014313.1|WP_013216521.1|2620255_2620681_-|hypothetical-protein
MRSAFAKPLASAAAVLFALASANGVFAEDAQFDDVESDGTQIVAAGAAPDQRPAKNLNSVPLDGFGVQAGTGSSVLVRQLSAARPNEDLVICVAGCFSGRDRVVYAQPIDRQARANMASAAATGASDGTSGSSPHGLRGTQ
>NC_014313.1|WP_013216522.1|2620839_2622462_-|alpha/beta-hydrolase
MYSLAKRWLQPRRSVAAIAAIMACGLVAACTQAPKLAKAPAETDSAKTATARPAPAPSTAGSPAPTTSPAEEEAPVASEAPEEPAGGAAPPPYPQASDPEGGSGRSYETAEPAPAPPPPALRPSAARPSPPAVAPEPPMPNAAPGAAANASAEAAAKAAAARRAEEEARAAMAQRYDNAKKSAAAAPAEDPAKTYDVVPVFYGTDRAVEADPKRLQFGAERGHQLQLGRALVTVPLIHKVPHIERPVVIEIPYFKVKVYEEKEDPQKHFTVQEIKGLTEAEMLALVKQRLATSSTFKDHAFVFVHGFNTSFDNALYRTAQIAYDLRFDGVPFLYSWPSGGKVASYTYDHGSVEQAEPRLAEFLDMVIQKSGAKSISLIAHSMGNELLLRVLERMKTKVPRGVVISQVILAAPDVDRDKFNILAREVIKFAKGVTLYAASNDRALSYSARFWGGVPRAGDVPATGPLIIPGLDTIDVTAVSTDALGLNHSGYAENPALLNDVKALVASGLRPPDKRFKSILAVDSAAGKYWRFQAETAAVP

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Crispr_ID: NC_014313_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014313_5

3300768-3300902

Orphan

Consensus_repeat	Method
GGTTGCTCGTCTTGCTCCGGTGCGCATCGGCAGCGAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014313_5

>merge|NC_014313|5|3300768-3300902|CRISPRCasFinder
GGTTGCTCGTCTTGCTCCGGTGCGCATCGGCAGCGAGCCCGGAGTTTCGTTGATTGCGATCGGCGACTTCGCTTAGCGGAGTCGGCCGCCGATCGTGGTTGTTCGTCTTGCTCCGGTGCGCATCGGCAGCGAGCC

>NC_014313|5|5|3300768-3300902|CRISPRCasFinder
GGTTGCTCGTCTTGCTCCGGTGCGCATCGGCAGCGAGCC	CGGAGTTTCGTTGATTGCGATCGGCGACTTCGCTTAGCGGAGTCGGCCGCCGATCGT
GGTTGTTCGTCTTGCTCCGGTGCGCATCGGCAGCGAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014313.1\|WP_013217170.1\|3289306_3289672_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013217186.1\|3309713_3310310_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_014313.1\|WP_013217190.1\|3312908_3314756_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236375
NC_014313.1\|WP_041921704.1\|3308314_3309418_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NC_014313.1\|WP_013217174.1\|3293726_3294383_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NC_014313.1\|WP_013217181.1\|3304033_3304933_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NC_014313.1\|WP_013217184.1\|3307157_3308129_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|180477
NC_014313.1\|WP_013217180.1\|3300965_3303926_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NC_014313.1\|WP_150103415.1\|3289695_3290112_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_013217172.1\|3290263_3291214_-\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NC_014313.1\|WP_013217182.1\|3305044_3306244_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NC_014313.1\|WP_013217183.1\|3306447_3307092_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NC_014313.1\|WP_013217177.1\|3296897_3297914_+\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|226258
NC_014313.1\|WP_013217179.1\|3299369_3300704_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NC_014313.1\|WP_150103285.1\|3295901_3296870_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NC_014313.1\|WP_013217188.1\|3311305_3312085_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NC_014313.1\|WP_013217178.1\|3297953_3299366_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NC_014313.1\|WP_013217173.1\|3291388_3293623_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NC_014313.1\|WP_081446248.1\|3312223_3312853_-\|hypothetical-protein	unknown	unknown	unknown
NC_014313.1\|WP_041922104.1\|3294429_3295833_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NC_014313.1\|WP_013217186.1\|3309713_3310310_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.01609e-09
NC_014313.1\|WP_013217190.1\|3312908_3314756_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NC_014313.1\|WP_041921704.1\|3308314_3309418_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	7.09444e-161
NC_014313.1\|WP_013217174.1\|3293726_3294383_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	7.10274e-142
NC_014313.1\|WP_013217181.1\|3304033_3304933_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	9.62205e-179
NC_014313.1\|WP_013217184.1\|3307157_3308129_-\|malate-dehydrogenase	gnl\|CDD\|180477	PRK06223, PRK06223, malate dehydrogenase; Reviewed.	0
NC_014313.1\|WP_013217180.1\|3300965_3303926_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NC_014313.1\|WP_013217172.1\|3290263_3291214_-\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NC_014313.1\|WP_013217182.1\|3305044_3306244_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NC_014313.1\|WP_013217183.1\|3306447_3307092_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	8.41288e-09
NC_014313.1\|WP_013217177.1\|3296897_3297914_+\|TraB/GumN-family-protein	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	9.53559e-68
NC_014313.1\|WP_013217179.1\|3299369_3300704_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NC_014313.1\|WP_150103285.1\|3295901_3296870_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.06033e-132
NC_014313.1\|WP_013217188.1\|3311305_3312085_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	7.13876e-170
NC_014313.1\|WP_013217178.1\|3297953_3299366_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NC_014313.1\|WP_013217173.1\|3291388_3293623_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_014313.1\|WP_041922104.1\|3294429_3295833_+\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.11656e-120

>NC_014313.1|WP_013217179.1|3299369_3300704_-|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSIEIRVPALGESVTEATVGKWFKQTGDAVNVDEPLVELETDKVTVEVPAPAAGVLGDILVKSGTTVAVGSLLAALKDGAAKSSAGNSQTTAPQAAKPSAPPSQPKPEHVAAKAPESAPAADAPRPPPAALKALTEAGLEPSDVRGTGRRGQILKEDVINAVAATAAKPAASPPPLREPTAAPVSPNAVTIQEAPATIVMRDVRLPSPANDATREERVRMSKLRQTIARRLKEAQNAAAMLTTFNDVDMSAIMALRAQYKDVFEKRHGVKLGFMGLFVKAAIQALRDVPSVNAEIDHDEIVYKNYYHIGVAVGTEKGLVVPVVREADRLSLAEIEQKITEFGKRARDGKLSIEDMQGGTFTISNGGVYGSLMSTPILNAPQSGILGMHRIEERPVVRNGQIVARPMMYLALSYDHRIVDGKEAVTFLVRIKECLEDPQRFILEL
>NC_014313.1|WP_013217178.1|3297953_3299366_-|dihydrolipoyl-dehydrogenase
MTASYDLIVIGTGPGGYVCAIRAAQLGLKVAVVEKRGTHGGTCLNVGCIPSKALLHASHAYDEAKHAFGAMGIDASPVLDLPKMQAFKREGVKGNVEGVAYLLKKNKVQTYFGTGRIVKSGQVAVTSPGGETETLEAKSIVIATGSDVTRLPGIEIDEKRVVSSTGALELASVPRKLLVIGAGVIGLELGSVWRRLGADVLVVEYLDRILPGIDKEVARAFQRLLDKQGIAFRLASKVTGVTGPETPGKPLSVQIEPAAGGATETVEADVVLVAVGRVPYTDGLGLAEAGVALDAKKRILTDGHFQTSASGIFAIGDVIAGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPNVIYTSPEVASVGKSEEELKAAGIAYNVGKFPFTANGRAKSIRMTDGFVKILADAATDRVLGVHIIGANAGELIAEACVLMEFGGSAEDLARTCHAHPTLSESVKEAALAVGKRAIHF
>NC_014313.1|WP_013217177.1|3296897_3297914_+|TraB/GumN-family-protein
MTTHVRTFLFFCFALLIAASATARADDVPVPCRGTDMLAELQTRSPDAYKTVIEESRQTSNTEAVLWKIEKSGVAPSYLLGTMHLSDPRISRLSARQQDFIAHSKSVALEVADLSEKAVGEAMAKAGHLLLYTDGHTLNAQLTDDEFKVVQRLVKEAGMPEEASGLVKPWLVSMLLATSDCERKQVVAGAKVLDLQVAEEAKKHGLTVKGLETIEQQLESLASIADDQQVAMLKVGIKYADRTDDLMESIVQMYLRREIGAAMPFQLALAAESGVPASAFDDFKKGLLSDRNVRMRDAAEPLLQDGSAFIAVGALHLVGPTGLVALLRERGYTVTAVE
>NC_014313.1|WP_150103285.1|3295901_3296870_+|tyrosine-type-recombinase/integrase
MTSLDEILTTDAELPLGGDLKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVFRAFLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTVDGAAELVATKNDDRAEWINARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHITGKGGKDRLVPALPIISEAIAKYMRLCPFPLSGDGPLFLGARGGPLSPRLIQLAMARMRRELGLPETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDRDRLLSVYDQAHPRTARS
>NC_014313.1|WP_041922104.1|3294429_3295833_+|FAD-binding-protein
MFSPELISRFADIVGAANALTGTDDKAPYLREWRDRYTGKTPVVLRPQTTDEVSRILALAHDEGIGIVAQGGNTGLVGGQIPSPAGDQIVLSLTRMKKVRDVDAAGGTMIVEAGVTLAEAQHAAEGAGRLFPLSLASEGSATIGGVLATNAGGTAVLAYGNARNLALGLEAVLADGRVWNGLRRLKKDNTGYDLRDLLIGSEGTLGVITAASLKLFPIPAERETAIVALESPAAALKLFRIAEAEAGSALTAFELWAHQAQDFALRYMSNTRDAFADAHPWYVLIELSHGGRSSSALEQLLTIAHGQELIRDAALARSLGQAQDFWRLREAFSEAQKGAGGSIKHDISVPIARIPEFLSHAAEIVEQVAPGARPVPFGHFGDGNLHYNISQPEGGDKAQFLSLWETMSDAIFELVSELGGSISAEHGIGQMKREALRQHKSAIELDMMRAIKQALDPKGILNPGKVL
>NC_014313.1|WP_013217174.1|3293726_3294383_+|fructose-6-phosphate-aldolase
MKFFVDTADVAEIKELAATGLLDGVTTNPTLVAKAGRDFKDIIKEICAVVPGPVSAEVAATDYAGMMREAEVLRKIAKNVTIKVPLTMDGLKACKALTSDGTMVNVTLCFSANQALLAAKAGATFVSPFIGRLDDIGLNGMDVIREIRTIYDNYPDLSTDILAASIRTVNHVREAAMIGADVATIPPAILKALVKHPLTDAGLTAFVNDWKKTGQTIV
>NC_014313.1|WP_013217173.1|3291388_3293623_-|primosomal-protein-N'
MNVPLDSLLEILDNGALSGARSVPVLMPVALDQTYDYLVPDGVEVPPGSFVLVPFGPQTRIGIVWDGQRGDGKAVDPKKLKSLTSLIDAPRLPEISMRFAEWVARYTLAPLGMVARMMMSADAAFEPPKHRFGVRLVEGAPLPPKMTQARTRVLEIAADGLIRVKSDLANLAACSTGVIDGLAASGNLVEVAIPERVFPRPQPAHATTDFTDKQAQAVATLVAAVDAKNFSVTLLDGVTGSGKTEVYFEAVARALEVGDQALIMLPEIALTSQFLDRFAQRFGAPPVEWHSALSPAERGRIWKGVARGDVRCVVGARSALFLPFVQLGLIVIDEEHDQGFKQEDRVHYQARDMAVVRGNLGKFPVVLASATPSIESHVNALVGRYRHAVLPGRFSGVAMPDVSLIDLKAEKLEPGKWLAQRLVGAITETLEKDQQTLLFLNRRGYAPLTLCRACGHRLECPQCTAWLVEHRFKKKLTCHHCGFSLSLPEKCPKCGEPGTLVACGPGVERVQEEVKERFPDARVALLSSDLIPGLAEMREIIRGIEAREFDIIIGTQIVAKGHNFPGLALVGVVDGDLGLAHGADPRSAERTFQLLHQVTGRAGRTSFVGRGFVQTYSTDHPVMQAIVAGDRDAFLNYEVKTRQSGLLPPYGRLAAIVISARDKALTEVTARDIARRAPQSEVISVLGPVEAPIAVVRGRHRWRLLVKAPRDVDLQAYLRAWAGTIPKLKSDVRITVDIDPYNFL
>NC_014313.1|WP_013217172.1|3290263_3291214_-|glutathione-synthase
MPLRIAVQMDPIDRIDIKGDSTFAILLEAQKRGHDIFYYTPADLSLHGDKLLARGQSLNVEDKHGAHFALSNARVENLGDLDVVLLRQDPPFDMAYITTTHLLERIHPKTLVVNDPAHVRNAPEKLFVLDFLDLMPPTLVTRSLADVQAFRKEYKDIIIKPLYGNGGAAVFRIKPDDGNLASLVELFQTVFREPFMVQEFRPEVKDGDKRIILVDGEVAGALNRVPQAGETRSNLHVGGTAVAAKLTKRDEEICARLKPELKKRGLIFTGIDVIGPYLTEINVTSPTGIRQVKAFGGNDIAAMIWDVIEKKKAHAA
>NC_014313.1|WP_150103415.1|3289695_3290112_-|hypothetical-protein
MATSPFDALIGRWTGDGILGFKESKPERVKCRATYLLDPAAQNELKQTIRCATSSGAVEVISNLKEDAGKLTGHWKETIHNFEGDLTGEVTPKGFRIIVKGADITANMDIIVRGTMQAVEIQFVNSSLVGLSMAMKKG
>NC_014313.1|WP_013217170.1|3289306_3289672_-|hypothetical-protein
MGPLFAILTAALSFAMSIPPAVEQYRRDRKGFWQTLRWMGVYALYIAVGIGVLMLSAEGPQPPTKAALATLFMLTWIAYGMVWLIRKVPRYRELPAWLDKRWLDHLFALALSCLLAAVFLV
>NC_014313.1|WP_013217180.1|3300965_3303926_-|2-oxoglutarate-dehydrogenase-E1-component
MSRNGQNEAFLRTSFLSAANAPYIEDMQAEYERNPGAVSDEWRLFFDSIKEPAAGPSVSSGPAWAPPLEALLNDTGTDRDLVGALTGDYGATERAIRDKIERRAQLAGFEITPAASLRATQDSIRALMLIRAYRVIGHLAADLDPLGIADRRVHRELLAETYGFTEADLDRPIFIDHVMGLETATMRQILTILRRTYCRQIGFQFMHITDPAQKSWIQERIEGPEKDISFTPEGRKAILRKLVETETFEKFCDLKYTGTKRFGLEGAEAMIPALEQIIKRGGHLGVREIALGMAHRGRLNVLANVMAKPLRAIFKEFKGGSFKPDDVEGSGDVKYHLGASSDRMFDGNGVHLSLTANPSHLEIVDPVVLGKVRAKQDQQGCSGGDRTPVLPLLIHGDAAFAGQGVVAECFGLSGLRGHRTAGSIHFIINNQIGFTTAPHHSRSSPYCSDVALMIEAPIFHVNGDNPEAVVHVAKIATEFRQRFQKPVVIDMFCYRRHGHNETDEPMFTQPAMYKRIKAHPTAVEIYSQSLIDEEVITVAEFDEIKASVRSNLDNEFAVSDGYKPNKADWLDGRWSGITRSDSDDWRGNTGIPIETLKDLGRRLTSIPNDFHIHKTIAKLLERRREMTESGVGIDWAMGEHLAFASLLMERFRVRLSGQDCERGTFSQRHAVFIDQETDRRFAPLKHLAPNQANFEIVNSMLSEEAVLGFEYGYSLAEPNALTLWEAQFGDFANGAQVVFDQFVSSAERKWLRMSGLVCLLPHGYEGQGPEHSSARLERYLQLCAEDNWQVANCTTPANYFHILRRQLHRNFRKPLILMTPKSLLRHKRVTSKIEEFGPGTSFHRLLWDDAERGVSSLKLRPDDEIKRVVVCSGKVYYDLLQARDAQGRDDVYLLRVEQLYPFPARALIQELGRFKFAEIVWCQEEPKNMGAWYFMDANIEWVLTHLGYIHRRPRYAGRAASASTATGLLSQHIKEQTALVADALGT
>NC_014313.1|WP_013217181.1|3304033_3304933_-|succinate--CoA-ligase-subunit-alpha
MSILVDKATKVICQGITGSQGTFHTKQARAYGTKIVGGVTPGKGGSKHPDAELADVPLFDSVAEAVARTGATASSIYVPPPFAADAILEAIDAEVPLIVCITEGIPVMDMVRVKRALDGSKSRLVGPNCPGILTPDQCKIGIMPGNIFKHGSVGIVSRSGTLTYEAVKQTTDVGLGQTTAVGIGGDPVKGTEFIDVLDLFLSDDETQSIIMIGEIGGSAEEDASEFLTREARKGRKKPMAGFIAGVTAPPGRRMGHAGAIISGGKGKAEDKLAAMQAAGIAISPSPAALGRTLIDILRA
>NC_014313.1|WP_013217182.1|3305044_3306244_-|ADP-forming-succinate--CoA-ligase-subunit-beta
MNIHEYQAKELYRAYGVPTPNGFAAFSVAEAVEAAKKLPGPVWVVKAQIHAGGRGKGKFLEASAGDKGGVRLAKSIDEVKEFAEQMLGKTLVTVQTGNAGRVVNRLYIEDGSAIDRELYLSALVDRSTSRVAFIVSQAGGMNIEDVAHETPEKIHTLTIDPATGYQPFHGRKVAFALGLKGDQVKAAGKLVENLYRMVVEKDMSLLEINPLVVTKDGKLICLDGKMNFDSNALYRHPEIVELRDLGEEDQTEIEASKHDLAFVKLDGNIGCLVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVREAFKIILADPSVKGILVNIFGGIMRCDIIAEGVIAAAREMDIKVPLVVRLEGTNVDLGKKILKESGLKIIPADDLADAAKKITDELKQVA
>NC_014313.1|WP_013217183.1|3306447_3307092_+|2OG-Fe(II)-oxygenase
MSQEFACIDIESLKSARTGHDPYNFLIGENFIRPQAIKPLKADYPDLREPGFFTEADVGSGAHGEFAKLLQDLKSPEVSEIVSEKLDIDLVDKPKMITIRRVSQAKDGRIHTDGEAKIATMLTYLNDKWDGTAAGCLRVLRNGKDFEDYVEQISPLTGTVFAFRRSDCSWHGHTPFVGERRVVQMTWLRSEEDVARKERRGSLSHSLKKIFHFG
>NC_014313.1|WP_013217184.1|3307157_3308129_-|malate-dehydrogenase
MARAKIALIGSGQIGGTLALLAGLKELGDIVMTDIIEGVAKGKALDLAQTAAVEGYNAKLSGAGPENYAAIAGADVCIVTAGVPRKPGMSRDDLLGINLKVMEQVGAAIKQHAPNAFVICITNPLDAMVWALRKFTGLPANKVVGMAGVLDSARFSCFLAEAAGVSIEDVRALTLGGHGDDMVPLVRYSTIGGVPLPDCVKLGFFSQEQLDAMIKRTRGGGGEIVALLGTGSAFYAPAASAISMAESYLRDKKRMLPCAAHLDGEYGIKDTYVGVSAIIGAGGIEKIVELALDENEKAMFDKSVASVQSLIDACKKISPALAS
>NC_014313.1|WP_041921704.1|3308314_3309418_-|cell-division-protein-ZapE
MGTIIDGYRQRLAEHEIEPDPAQAFLAARLDELQASLVASHRNRSVFSRLLGRSSETPKGLYVWGAVGRGKTMLMDLFFETIEFEPKRRAHFHEFMADVHDRIGAARDETPGDPIPHVASAIAREARLLCFDEMHVSDIADAMILGRLFQNLFAAGVTVVATSNARPSDLYKNGLNRQLFLPFIDLIGAHMDVVELQSEKDFRLDKLSGAQLYFYPADAVARASLDAHWDRLTGKHPGKPQTLEVKGRKLVVPLASVGVARFSFDELCNRPLGANDYLHIAHAFHTVIIDDIPVLTPERRDVARRFINLVDSLYDSRICLIASAAAEPSALYPEGSGSEAFQRTASRLTEMRSEAYLAGHSGGRARH
>NC_014313.1|WP_013217186.1|3309713_3310310_+|GNAT-family-N-acetyltransferase
MLDDAHVESDAHFGFIRRLLASESYLFRDHLQRLDGDARHRRFGHDVSDAFIATYAAHASDFGNVTFGYFVDGVVRGVAELRPGTLMREANAEVAFSVERAFANRGIATQLMGRVIRTARNRGYSHLTLVCMPSNAKMQAIARHYGADLKIEDGSIFADIVPNRADYRSLVADMIDEPMTYLHSALDMQARINGVKPF
>NC_014313.1|WP_013217188.1|3311305_3312085_-|succinate-dehydrogenase-iron-sulfur-subunit
MVQLTLPKNSKLTRGKTWNQPDREGDWKEFRIYRWNPDDSENPRIDTYQVDRKQCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGTNTLACLKGMDDIKGPVKVYPLPHLEVVKDLVPDLTNFYAQHRSIEPWLKTDTATPPKEWKQSRDDRSKLDGLYECILCACCSTSCPSYWWNSDRYLGPAILLQAYRWVIDSRDEATGERLDNLEDPFRLYRCHTIMNCAKACPKGLSPAKAIAELKKLMVERRV
>NC_014313.1|WP_081446248.1|3312223_3312853_-|hypothetical-protein
MVRRLEEPHPLSKSTSEPVDESDTRMPPDPFAAVLPALAALGAITSIAAINWSGEGKLATRTRTKRKTSAALRDLETCCMGLAEIFRRFQRHPRVFAGEGGQASAPLKFGVHGQRIRADAQRLYLQLMNDIASMLVLAAQNAFDVMTSIEDGDIDAPEEIFFAFGEQQDRLNTVLQTRVTLRAAVDTGADIAERLVALVAELKTYQKPA
>NC_014313.1|WP_013217190.1|3312908_3314756_-|succinate-dehydrogenase-flavoprotein-subunit
MANTNGKTNGASAAPAVGGKAYPIVDHQYDVVVVGAGGAGLRATLGCAEAGLKTACVTKVFPTRSHTVAAQGGVAAALGNMGPDDWRWHMYDTVKGSDWLGDQDAIEYLCRHAPAAVYELEHYGVPFSRTEDGKIYQRPFGGMTTDFGEGPPAQRTCAAADRTGHAMLHTLYGQSLRYAAEFFVEYFALDLIMDRDGACRGIIALSLEDGTLHRFRAKKTILATGGYGRTYFSCTSAHTCTGDGNAMVLRAGLPLQDMEFVQFHPTGIYGAGVLITEGARGEGGYLTNSKGERFMERYAPHAKDLASRDVVSRSMTVEIREGRGVGAEGDHIFLHLDHLDPKILAERLPGITESAKVFAGVDLRRQPIPVLPTVHYNMGGIPTNYHGEVLTKKDGNPDHVVPGLMAIGEAACVSVHGANRLGSNSLIDLVVFGRAAGLRCAETIETGAMQTELPKDADDKILDRLDRFRFAKGSTPTSALRLRMQKTMQANCAVFRDGPVLKEGVEKIAAVWRDAADISVTDRSLIWNSDLVETLEFDNLIAQAAVTVTGAENRKESRGAHAREDYPKRDDVNWMKHTLAWADYATKTVKLDERPVHTRTMTNEVKYIEPKARVY

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

682392 : 738935

Paenibacillus_phage(28.57%)

tail,integrase,transposase

attL 674661:674676|attR 699203:699218

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
674661:674676	attL	NA	NA	NA	NA
WP_013214694.1\|682392_682629_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_150103182.1\|682625_682976_-	hypothetical protein	NA	NA	NA	NA
WP_013214696.1\|683273_684263_-	hypothetical protein	NA	NA	NA	NA
WP_041921810.1\|684259_684997_-	hypothetical protein	NA	NA	NA	NA
WP_013214698.1\|685038_686163_-	hypothetical protein	NA	NA	NA	NA
WP_049775146.1\|686654_688730_-	hypothetical protein	H6WU26	Pseudomonas_phage	5.5e-27	32.4
WP_013214701.1\|689169_689853_-	hypothetical protein	NA	NA	NA	NA
WP_013214702.1\|690305_691160_-	hypothetical protein	NA	NA	NA	NA
WP_013214703.1\|691203_691926_-	hypothetical protein	NA	NA	NA	NA
WP_013214704.1\|691922_692675_-	hypothetical protein	NA	NA	NA	NA
WP_013214705.1\|692850_694098_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	4.0e-81	48.2
WP_013214706.1\|694545_695640_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_013214707.1\|695726_696143_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_013214708.1\|696451_697498_+	threonine-phosphate decarboxylase	A0A142C026	Faustovirus	1.8e-05	24.6
WP_013214709.1\|697772_700151_+	TonB-dependent receptor	NA	NA	NA	NA
699203:699218	attR	NA	NA	NA	NA
WP_013214710.1\|700150_701185_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013214711.1\|701191_702004_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013214712.1\|702000_702750_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.2e-27	34.5
WP_013214713.1\|702746_703988_+	NnrS family protein	NA	NA	NA	NA
WP_013214714.1\|703984_704956_+	NnrS family protein	NA	NA	NA	NA
WP_013214715.1\|704952_705123_-	hypothetical protein	NA	NA	NA	NA
WP_013214716.1\|705343_706024_-	DsbA family protein	NA	NA	NA	NA
WP_013214717.1\|706106_706583_-	hypothetical protein	NA	NA	NA	NA
WP_013214718.1\|706602_707691_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_013214719.1\|708053_708431_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013214720.1\|708608_709643_+	radical SAM protein	NA	NA	NA	NA
WP_041921515.1\|709668_710733_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013214722.1\|710754_712056_+	radical SAM protein	NA	NA	NA	NA
WP_081446217.1\|712079_713141_+	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_013214724.1\|713137_713833_+	GMP synthase - glutamine amidotransferase domain-like protein	NA	NA	NA	NA
WP_013214725.1\|714006_714384_+	DsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA
WP_013214726.1\|714409_715153_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_013214727.1\|715199_716600_+	heterodisulfide reductase subunit B	NA	NA	NA	NA
WP_013214728.1\|716664_717714_+	CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein	NA	NA	NA	NA
WP_013214729.1\|717718_718567_+	hypothetical protein	NA	NA	NA	NA
WP_013214730.1\|718579_719362_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_041921826.1\|719434_720355_+	CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein	NA	NA	NA	NA
WP_013214732.1\|720360_720831_+	hypothetical protein	NA	NA	NA	NA
WP_013214733.1\|720865_721306_+	glycine cleavage system protein H	NA	NA	NA	NA
WP_041921827.1\|721327_722722_-	cytochrome P450	I6XNL0	Cotesia_sesamiae_Mombasa_bracovirus	2.3e-16	23.3
WP_081446218.1\|722916_723198_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_013214736.1\|723295_724351_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_013214737.1\|724363_724738_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013214738.1\|724795_725131_-	regulatory protein SoxS	NA	NA	NA	NA
WP_041921518.1\|725183_725783_-	sulfur oxidation c-type cytochrome SoxX	NA	NA	NA	NA
WP_013214740.1\|725829_726663_-	sulfur oxidation c-type cytochrome SoxA	NA	NA	NA	NA
WP_013214741.1\|726814_727276_+	thiosulfate oxidation carrier protein SoxY	NA	NA	NA	NA
WP_013214742.1\|727313_727643_+	thiosulfate oxidation carrier complex protein SoxZ	NA	NA	NA	NA
WP_013214743.1\|727685_729374_+	thiosulfohydrolase SoxB	NA	NA	NA	NA
WP_013214472.1\|729603_730869_-\|transposase	IS256-like element IS1354 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-27	26.7
WP_085985066.1\|731030_731868_+\|transposase	IS5-like element IS1355 family transposase	NA	NA	NA	NA
WP_013214745.1\|731934_733170_+\|transposase	IS701-like element IS1357 family transposase	NA	NA	NA	NA
WP_013214746.1\|733427_734225_-	MEDS domain-containing protein	NA	NA	NA	NA
WP_013214747.1\|734915_735782_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_158020949.1\|735953_736946_+	hypothetical protein	NA	NA	NA	NA
WP_013214749.1\|736980_737559_+	hypothetical protein	NA	NA	NA	NA
WP_013214472.1\|737669_738935_-\|transposase	IS256-like element IS1354 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.2e-27	26.7

DBSCAN-SWA_2

1155340 : 1172485

Rhodobacter_phage(27.27%)

head,protease,tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150103340.1\|1155340_1157329_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.1e-69	39.0
WP_041921563.1\|1157338_1157740_+	hypothetical protein	NA	NA	NA	NA
WP_013215138.1\|1158559_1158979_+	hypothetical protein	NA	NA	NA	NA
WP_013215139.1\|1159143_1159848_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	4.9e-36	49.0
WP_013215140.1\|1160021_1161263_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	4.9e-71	41.2
WP_013215141.1\|1161519_1162095_+	hypothetical protein	NA	NA	NA	NA
WP_013215142.1\|1162091_1162424_+\|head	phage head closure protein	NA	NA	NA	NA
WP_013215143.1\|1162420_1162591_+	hypothetical protein	NA	NA	NA	NA
WP_013215144.1\|1162590_1163004_+	DUF3168 domain-containing protein	A1BU61	Staphylococcus_virus	1.2e-05	31.0
WP_013215145.1\|1163162_1163576_+\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	2.7e-18	39.4
WP_013215146.1\|1163737_1164118_+	gene transfer agent family protein	NA	NA	NA	NA
WP_013215147.1\|1164117_1164291_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_013215148.1\|1164295_1164889_+\|tail	phage tail tape measure protein	G9JXH3	Shigella_phage	1.4e-07	35.7
WP_013215149.1\|1164901_1165540_+	DUF2460 domain-containing protein	A0A0K1Y6G4	Rhodobacter_phage	1.2e-46	47.5
WP_013215150.1\|1165536_1166397_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	8.9e-72	50.4
WP_013215151.1\|1166400_1166850_+	C40 family peptidase	F4YXU4	Roseobacter_phage	3.4e-30	44.4
WP_013215152.1\|1166853_1170801_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0K1LL82	Rhodobacter_phage	1.1e-252	42.7
WP_013215153.1\|1171171_1172485_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	2.4e-28	44.9

DBSCAN-SWA_3

1214330 : 1252924

Vibrio_phage(20.0%)

head,terminase,tail,capsid,portal,integrase

attL 1208302:1208317|attR 1227713:1227728

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1208302:1208317	attL	NA	NA	NA	NA
WP_169305478.1\|1214330_1215383_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013215190.1\|1215438_1215771_-	transcriptional regulator	NA	NA	NA	NA
WP_013215191.1\|1215790_1216147_-	hypothetical protein	NA	NA	NA	NA
WP_013215192.1\|1216150_1216372_-	hypothetical protein	NA	NA	NA	NA
WP_013215193.1\|1216368_1216620_-	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_013215194.1\|1216831_1217590_-	hypothetical protein	A0A0E3M3Z6	Verrucomicrobia_phage	2.1e-45	45.6
WP_013215195.1\|1217592_1218057_-	hypothetical protein	NA	NA	NA	NA
WP_013215199.1\|1218808_1219285_-	hypothetical protein	NA	NA	NA	NA
WP_150103203.1\|1219287_1219698_-	hypothetical protein	NA	NA	NA	NA
WP_013215201.1\|1220035_1220656_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_169305479.1\|1221274_1221913_+	hypothetical protein	NA	NA	NA	NA
WP_013215204.1\|1222152_1222977_+	hypothetical protein	NA	NA	NA	NA
WP_013215205.1\|1222973_1223381_+	hypothetical protein	NA	NA	NA	NA
WP_041921880.1\|1223599_1224298_+	hypothetical protein	A0A076GD02	Sinorhizobium_phage	7.2e-48	49.3
WP_013215208.1\|1224294_1224648_+	hypothetical protein	NA	NA	NA	NA
WP_150103344.1\|1224740_1226399_+	ATP-dependent helicase	A0A1X9HX80	Ruegeria_phage	5.8e-120	44.3
WP_013215210.1\|1226409_1226637_+	hypothetical protein	NA	NA	NA	NA
WP_013215211.1\|1226633_1227158_+	hypothetical protein	NA	NA	NA	NA
WP_013215212.1\|1227150_1227537_+	DUF2312 domain-containing protein	NA	NA	NA	NA
WP_013215213.1\|1227546_1227882_+	hypothetical protein	NA	NA	NA	NA
1227713:1227728	attR	NA	NA	NA	NA
WP_150103205.1\|1228181_1229036_+	hypothetical protein	NA	NA	NA	NA
WP_013215215.1\|1229019_1229412_+	hypothetical protein	NA	NA	NA	NA
WP_013215216.1\|1229408_1229948_+	hypothetical protein	NA	NA	NA	NA
WP_013215217.1\|1229944_1230826_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	9.7e-82	55.1
WP_041921570.1\|1230919_1231255_+	hypothetical protein	A0A2I7S754	Vibrio_phage	2.8e-21	52.7
WP_013215220.1\|1231404_1231725_+	hypothetical protein	NA	NA	NA	NA
WP_013215222.1\|1232025_1232298_+	hypothetical protein	NA	NA	NA	NA
WP_013215223.1\|1232859_1234128_-	hypothetical protein	NA	NA	NA	NA
WP_013215224.1\|1234263_1234521_-	hypothetical protein	NA	NA	NA	NA
WP_013215225.1\|1234531_1234747_-	hypothetical protein	NA	NA	NA	NA
WP_013215226.1\|1234879_1235086_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_150103206.1\|1235088_1235301_+	hypothetical protein	NA	NA	NA	NA
WP_013215228.1\|1235304_1235463_+	hypothetical protein	NA	NA	NA	NA
WP_013215229.1\|1235459_1235717_+	hypothetical protein	NA	NA	NA	NA
WP_041921574.1\|1235706_1235913_+	hypothetical protein	NA	NA	NA	NA
WP_013215230.1\|1236123_1236351_+	hypothetical protein	NA	NA	NA	NA
WP_013215231.1\|1236347_1236623_+	hypothetical protein	NA	NA	NA	NA
WP_013215232.1\|1236726_1237008_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013215233.1\|1237007_1237250_+	hypothetical protein	NA	NA	NA	NA
WP_013215234.1\|1237915_1238056_+	hypothetical protein	NA	NA	NA	NA
WP_013215235.1\|1238145_1238298_+	hypothetical protein	NA	NA	NA	NA
WP_013215237.1\|1238491_1238707_+	hypothetical protein	NA	NA	NA	NA
WP_041921576.1\|1238717_1239134_+	hypothetical protein	NA	NA	NA	NA
WP_013215239.1\|1239146_1240457_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_013215241.1\|1240639_1240828_+	hypothetical protein	NA	NA	NA	NA
WP_013215242.1\|1240820_1241726_+	hypothetical protein	NA	NA	NA	NA
WP_013215243.1\|1241978_1242590_+	hypothetical protein	NA	NA	NA	NA
WP_013215244.1\|1242589_1244461_+\|terminase	phage terminase large subunit family protein	A0A059WKL6	Vibrio_phage	2.2e-99	36.9
WP_169305480.1\|1244479_1244710_+	hypothetical protein	NA	NA	NA	NA
WP_013215246.1\|1244719_1246345_+\|portal	phage portal protein	A0A2D1GMV5	Marinobacter_phage	1.4e-65	34.1
WP_013215247.1\|1246350_1247640_+	S49 family peptidase	A0A2D1GN02	Marinobacter_phage	5.4e-49	35.2
WP_013215248.1\|1247691_1248366_+\|head	head decoration protein	NA	NA	NA	NA
WP_013215249.1\|1248483_1249557_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	1.8e-58	40.8
WP_013215250.1\|1249558_1249924_+	hypothetical protein	NA	NA	NA	NA
WP_013215251.1\|1249923_1250322_+	hypothetical protein	NA	NA	NA	NA
WP_013215252.1\|1250325_1251123_+	hypothetical protein	NA	NA	NA	NA
WP_013215253.1\|1251144_1251354_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_013215254.1\|1251388_1252924_+\|tail	Mu tail sheath family protein	B5TK67	Pseudomonas_phage	2.6e-66	35.6

DBSCAN-SWA_4

1287724 : 1295397

uncultured_Mediterranean_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150103346.1\|1287724_1288495_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-30	33.7
WP_013215288.1\|1288534_1289392_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.0e-43	50.0
WP_013215289.1\|1289570_1289780_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.5e-06	47.4
WP_013215290.1\|1289814_1290198_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_013215291.1\|1290201_1291032_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.4e-50	45.2
WP_013215292.1\|1291120_1292509_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.9e-103	45.3
WP_013215293.1\|1292508_1292760_+	hypothetical protein	NA	NA	NA	NA
WP_013215294.1\|1292761_1293526_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.7e-37	37.8
WP_013215296.1\|1293810_1295397_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	Q8SBN9	Clostridium_phage	1.7e-20	43.6

DBSCAN-SWA_5

1762049 : 1769605

Klosneuvirus(16.67%)

tRNA,integrase

attL 1768188:1768206|attR 1781218:1781236

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013215695.1\|1762049_1763612_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.6e-98	37.9
WP_013215696.1\|1763661_1764783_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	5.1e-11	25.7
WP_013215697.1\|1764782_1765412_-	dTMP kinase	A0A1L2BX49	Bacteriophage	1.4e-29	36.8
WP_013215698.1\|1765441_1766635_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.2e-44	34.1
WP_013215699.1\|1766743_1767877_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.3e-18	52.4
1768188:1768206	attL	NA	NA	NA	NA
WP_013215700.1\|1768348_1769605_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	8.0e-106	49.2
WP_013215700.1\|1768348_1769605_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	8.0e-106	49.2
1781218:1781236	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3065270 : 3077339

Azospirillum_phage(60.0%)

head,protease,tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013216920.1\|3065270_3067382_-\|tail	phage tail tape measure protein, conserved region	NA	NA	NA	NA
WP_013216921.1\|3067374_3067608_-	hypothetical protein	NA	NA	NA	NA
WP_013216922.1\|3067604_3067985_-	hypothetical protein	NA	NA	NA	NA
WP_013216923.1\|3068003_3068474_-	hypothetical protein	NA	NA	NA	NA
WP_013216924.1\|3068486_3068882_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013216925.1\|3068968_3069484_-	phage protein, HK97 gp10 family	NA	NA	NA	NA
WP_013216926.1\|3069480_3069816_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013216927.1\|3069815_3070391_-\|head,tail	phage head-tail connector protein	A0A141GEW4	Brucella_phage	9.0e-12	30.6
WP_013216928.1\|3070394_3070772_-	hypothetical protein	NA	NA	NA	NA
WP_013216929.1\|3070803_3071217_-	hypothetical protein	NA	NA	NA	NA
WP_013216930.1\|3071258_3071735_-	hypothetical protein	NA	NA	NA	NA
WP_013216931.1\|3071852_3072305_-	hypothetical protein	B0VK34	Azospirillum_phage	5.2e-31	53.1
WP_013216932.1\|3072408_3073911_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.1e-36	34.3
WP_013216933.1\|3073957_3074572_-\|head,protease	HK97 family phage prohead protease	B0VK32	Azospirillum_phage	1.5e-25	41.1
WP_013216934.1\|3074607_3075441_-	hypothetical protein	NA	NA	NA	NA
WP_013216935.1\|3075463_3075742_-	hypothetical protein	NA	NA	NA	NA
WP_013216936.1\|3075723_3075996_-	hypothetical protein	NA	NA	NA	NA
WP_013216937.1\|3075992_3077339_-\|portal	phage portal protein	G3EN97	Psychrobacter_phage	1.8e-34	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014313

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection