CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014328	Clostridium ljungdahlii DSM 13528, complete sequence	3 crisprs	csa3,cas3,WYL,DEDDh,cas8b1,DinG,PD-DExK,cas3HD	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014328_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014328_1

2791988-2792177

Orphan

Consensus_repeat	Method
GAATAAGTGATTCACACCAAATCGAAGATTTGGGTTCTAATTTAGGTAACT	PILER-CR

2 spacers

The CRISPR arrays of NC_014328_1

>merge|NC_014328|1|2791988-2792177|PILER-CR
TAAGTGATTCACACCAAATCGAAGATTTGGGTTCTAATTTGCGTAACTCTTTCTCCTTTCAGTCGAATGAATAAGTGATTCACGCCAAATCGAAGATTTGGGTTCTAATTTAGGTAACTCTTTCTCCTTTCAGTCGAATGAATAAGTGATTCACACCAAATCAAAGATTTGGGTTCTAATTTAGGTAACT

>NC_014328|1|1|2791988-2792177|PILER-CR
TAAGTGATTCACACCAAATCGAAGATTTGGGTTCTAATTTGCGTAACTCTTTC	TCCTTTCAGTCGAATGAATA
AGTGATTCACGCCAAATCGAAGATTTGGGTTCTAATTTAGGTAACTCTTTCTC	CTTTCAGTCGAATGAATA
AGTGATTCACACCAAATCAAAGATTTGGGTTCTAATTTAGGTAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014328.1\|WP_013239172.1\|2799684_2800587_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_014328.1\|WP_035787729.1\|2789835_2790939_-\|amidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|378910
NC_014328.1\|WP_013239160.1\|2785108_2785804_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_014328.1\|WP_013239173.1\|2800633_2801257_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_014328.1\|WP_013239163.1\|2786995_2787667_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224103
NC_014328.1\|WP_013239174.1\|2801308_2803477_-\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NC_014328.1\|WP_013239170.1\|2797312_2798377_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_014328.1\|WP_013239175.1\|2803525_2803984_-\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239168.1\|2792694_2793831_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|224370
NC_014328.1\|WP_013239176.1\|2804069_2804366_+\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239162.1\|2786361_2786814_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NC_014328.1\|WP_013239177.1\|2804442_2804958_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|377135
NC_014328.1\|WP_013239159.1\|2784323_2785109_-\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239171.1\|2798391_2799393_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NC_014328.1\|WP_013239164.1\|2787846_2788221_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_014328.1\|WP_013239158.1\|2783178_2783862_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_014328.1\|WP_013239167.1\|2791058_2791964_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|379247
NC_014328.1\|WP_013239169.1\|2794062_2797269_-\|carbamoyl-phosphate-synthase-(glutamine-hydrolyzing)-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_014328.1\|WP_013239165.1\|2788232_2789759_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|310280
NC_014328.1\|WP_013239161.1\|2785806_2786175_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639

Protein	Function_ID	Function_description	E-value
NC_014328.1\|WP_013239172.1\|2799684_2800587_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	7.92704e-96
NC_014328.1\|WP_035787729.1\|2789835_2790939_-\|amidase-domain-containing-protein	gnl\|CDD\|378910	pfam12671, Amidase_6, Putative amidase domain.	1.29099e-53
NC_014328.1\|WP_013239160.1\|2785108_2785804_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.13517e-62
NC_014328.1\|WP_013239173.1\|2800633_2801257_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.93413e-23
NC_014328.1\|WP_013239163.1\|2786995_2787667_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	3.58608e-56
NC_014328.1\|WP_013239174.1\|2801308_2803477_-\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_014328.1\|WP_013239170.1\|2797312_2798377_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_014328.1\|WP_013239168.1\|2792694_2793831_+\|aldo/keto-reductase	gnl\|CDD\|224370	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only].	4.41593e-164
NC_014328.1\|WP_013239162.1\|2786361_2786814_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	6.31523e-08
NC_014328.1\|WP_013239177.1\|2804442_2804958_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|377135	pfam03802, CitX, Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.	1.61268e-81
NC_014328.1\|WP_013239171.1\|2798391_2799393_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NC_014328.1\|WP_013239164.1\|2787846_2788221_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.28386e-41
NC_014328.1\|WP_013239158.1\|2783178_2783862_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.24904e-82
NC_014328.1\|WP_013239167.1\|2791058_2791964_-\|M15-family-metallopeptidase	gnl\|CDD\|379247	pfam13539, Peptidase_M15_4, D-alanyl-D-alanine carboxypeptidase. This family resembles VanY, pfam02557, which is part of the peptidase M15 family.	2.12721e-21
NC_014328.1\|WP_013239169.1\|2794062_2797269_-\|carbamoyl-phosphate-synthase-(glutamine-hydrolyzing)-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_014328.1\|WP_013239165.1\|2788232_2789759_+\|M56-family-metallopeptidase	gnl\|CDD\|310280	pfam05569, Peptidase_M56, BlaR1 peptidase M56. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. homologs to this peptidase domain, which corresponds to Merops family M56, are also found in a number of other bacterial genome sequences.	1.02844e-54
NC_014328.1\|WP_013239161.1\|2785806_2786175_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	3.2356e-37

>NC_014328.1|WP_013239167.1|2791058_2791964_-|M15-family-metallopeptidase
MKKKIIIIALLLICVCVSPVKALTDDYYTTMKQDILCLMMAYPEYITDLEKSNDGKVYVVTKSGKRILYDDKDSKNFQEKMYNTDLQDMLEQTYPIGTINGVMEKDFDPGRVRTYRLLKEVYGCDRKAIESNLKMANLGYRRFQFNGNNNAAKSLESAVKELMPISQRNPKVYKALFPSSGTFNYRCISGTSLLSPHSFGIAIDLARDRRDYWKWVTKEEGDKRIQEYPKEIVDVFEKNGFVWGGKWSHFDILHFEYRPEIILKSKYFGQKNSNNKFWYSQAPYNDKLVNGYIQKIDEKLK
>NC_014328.1|WP_035787729.1|2789835_2790939_-|amidase-domain-containing-protein
MAMKNSLKKRLYQVAIIILFIFLIFPFYRAKCEEADSKEEAVNSIQNIFENRNKAILNGDLKLIEGNYDKNTRYGTWAYEHEEKKMKYLKNWEEKQNVKFIQISPDIMIKRIRGKDNKYSVNLICSTEYSYIYENDPKLINKFRIGTSHILNIAKRSEGWIITKEWYKDPFADSLNLNNLKVDNVNQYIQSQNKRDFSNIGDRRKGAVEYADKYCGIASEKEYGYSYNRKYRNYNSQGGDCANFASQILHEGSKFRKTSSWNYDKTGATASWINAGGFKDYMIYSGRASLIAHGSYEKVYKASYKLLPGDFVAYEKKGDITHISVVTGADSKGYSLVSCHNTDRNRVPWDLGWSDKNIKFWLVHVNY
>NC_014328.1|WP_013239165.1|2788232_2789759_+|M56-family-metallopeptidase
MSTLMKSIFTASLNGSILVILILLIKNLLKERLKAEFHYILWFLLIIKLIIPYGPESNLSIFNIYNSVSEKNSTVSSKYYLKTSNTSKNKLKDSNVPVNLSKNKNIESSNKKINYKSILFFIWLIGMVFFIANTLYEIRKVQLIKKNAISNKSSNFNNILNNCLNIMNINKSVSLIYPYKSIGPCLCGLIKPTIFIPQNIIENISEDEFKHIIIHELCHLKRKDLLINWIIIILNTVYWFNPIIRYGFYKMKQDCETSCDAYAIRYLGIDRNINYGNTIIKILQLENHTPSLITSAPMAVNNSEIKRRITMISKHKKNSLKNIICGILVIAAVTTIGLTSGISKANPNSDNLNSKPYYESIMDYLINSVKGHSSLYNMNSNENNNFTSNNSLGFNGTGEFQFKELNFIGYKKYWSSNFENNIFAAEFDLFNGMESYKITSSKPTCSIKINTDIKKGSVAISIYNNKKVLFEKANPTDKTITISKEDAKNIKLQCIGVKASGNIRFELN
>NC_014328.1|WP_013239164.1|2787846_2788221_+|BlaI/MecI/CopY-family-transcriptional-regulator
MKETSSISDAELTIMKIIWKNPNITANKIIEQLSDKTKWKPNTVKTLINRLLKKNVIGFNKEGKEYFYYAVVQEESYINAESNSFLNKIFNGSVISMVLNFVDNKKLSKNEIKELKDILNKNRE
>NC_014328.1|WP_013239163.1|2786995_2787667_+|NAD(P)H-dependent-oxidoreductase
MKKLLYITANTKPEDLSVSKTVGRSFVKEFLSKNADYMVEELDLYNENIPEINHRIFKGRAELVSGNDYNTLSDEDKKIVDRINELCNQFLSADTYVIAAPMWSVSYPARLKSYLDCIIINNRLIKISEEDIKGLLDDKKRNMVYIQSSAAVYPKIFNSKFNHAIDYFRDVFKFLGVNKFDYILVEGTEDSSVGKAKAIGNVQNNIKSVVNKFTENIPLMDRM
>NC_014328.1|WP_013239162.1|2786361_2786814_-|MBL-fold-metallo-hydrolase
MLFKLSKTQQITGNIYVVRSLISNFFIYSDFRTTICFDTGFIPSVVNRELKKINIEPKSVSHVFLTYPSFYHAGCIKLFKNADIYFSAETSLKKSGKGMFSCKSDENEKYKKLKDGDVVDVDGIRIKSIVFPKHKLGSISYMVNDDILFI
>NC_014328.1|WP_013239161.1|2785806_2786175_-|GntR-family-transcriptional-regulator
MDVEFDSNVPIYMQIIDIVKRKIVKEELKPGDKLLSVREMSSKLKVNPNTIQRAYQELERNDIAYKQRGTGTFIKEDISMVEKLKEEMAQKIIYSFIIGMKELGFSSDEIIKIVEEKVQGGK
>NC_014328.1|WP_013239160.1|2785108_2785804_-|ABC-transporter-ATP-binding-protein
MEPLLKSTDLKKLYFRKQALDGLNLEIQKGKITGLLGPNGSGKTTFLKIAAGILRQSSGEILINGNKPGTKTKAEVSYLPDKDYLFKWMRIEDAVNFFKDMYADFDGDKAQDMLKFMNLDPDSKVKTLSKGMSEKLYLSLVLSRKAKLYILDEPLGGVDPTTREKILDAILENYTENSSVLITTHLVSDIERLFDDVAFISEGKIVLFGNAEELRNERKMSIDEIYREVFK
>NC_014328.1|WP_013239159.1|2784323_2785109_-|hypothetical-protein
MFKLVKYDLQGYFKDFLIMISAIVILNVALFTRVNVWNSGSILALNMAIGFAAEIIVVIWNVKLFSRDIREDTSILLFTLPKSGKNILMNKIVTALIQMVVVQFVIFIFTAMWIQIFKVVQGGVIDIKISFIQFIKNINPKFALFTFLAILVIYVTFLLTVYISITLSKVAIKNRKFGKLGSFIIFVILCIAQGKIAEIFSEAFPQTFKLKVLNLDIPSVDPNNVVANGIDINIVSIFVSVAVLIGLFYATAYLIENKLDL
>NC_014328.1|WP_013239158.1|2783178_2783862_-|response-regulator-transcription-factor
MNKTILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIMMPVMDGWTACKELRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYSEEENQNKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAIWGIDYYGDLRTVDTHVKRLREKLGVKSYLIATVRGVGYKFEVKKQ
>NC_014328.1|WP_013239168.1|2792694_2793831_+|aldo/keto-reductase
MQYRKFCKDGFKVSTLGFGCMRLPIINNDPSKINEKEALKIIRHAIDNGVNYLDTAYPYHGGNSEVLVGKVLKDGYREKVRIATKMPVWLVEKYEDFDKYLNEQLERLDVDYIDYYLLHAMTKDRMDKMENLGVFKFLNKALEDGKINHVGFSFHDNLMAFKHIINLFPWEFCQIQFNYLDEDYQAGIDGLEYAADKGLSVVVMEPLKGGLLSGNLPEDINNIFNKSKIKKSPVDWALSWVLNHPEVSVLLSGMNSLEQVNENISIASKTLPNSISEEDMDLIEQAKEKFNALMKIKCTRCGYCSPCKVDLDIPNIFSMYNNYFMYKSKESIFNKYNNMPKKSKASSCISCGKCEDNCPQHLPIRALLRQVKSTFEEK
>NC_014328.1|WP_013239169.1|2794062_2797269_-|carbamoyl-phosphate-synthase-(glutamine-hydrolyzing)-large-subunit
MPLRENLKKVLIIGSGPIIIGQAAEFDYSGTQACEAIKKEGIQTVLVNSNPATIMTDKNIADKTYIEPLTVESLEAIIGREKPDGVLAGFGGQTALNLAMELNEIGVFKKYNVELLGIKTESIKNAEDRESFKNLMNEIDEPIAVSEIATNLEECKKFLNKVSLPIIIRPAYTLGGTGGGIASTYEEYMEICENGLEESPINQILLEQSLAGWKELEYEIMRDKKDNCMVVCNMENLDPVGIHTGDSIVVAPSQTLNDREYQMLRRSAIKIIRTLKIEGGCNIQFALDPNSNRYMVIEVNPRVSRSSALASKAAGYPIAKIAAKIALGYTLDELKNYVTGNSSALFEPALDYCVVKMPKWPFDKFKTANRTLKTQMKATGEVMAIDRSFESALLKAVISLEGKIIGLKLDKFENISKDEIIEKINNQDDERLFALAEALRKGMTIDELHELTKIDEWFLGGIENIVNMENELISNVPNVETIQKAEIMGFTDEYICKLIGMKLEDLKKLREVNGIKSVYKMVDTCSGEFEAKTSYYYSCYDLESDNVVSNNKKILVIGSGPIRIGQGIEFDYCCVNGVWAIKKAGYEAIIINNNPETVSTDFDISDKLYFEPLYIDDVMNVINEEKVDGVIVQFGGQTALNLSKKLNDRGVNLLGTSFESIDLAEDREKFRVLLKELDINSPVGGSVTSLEEADNLVAEIGYPVIVRPSYVIGGRAMKVVYNYEELCKYLKDAVNLSKEHPVLVDKYIVGKEIEVDAISDGEDLIIPGIMEHIEKTGVHSGDSIAVYPASDLPENVLKKIEDYTVKIAKKLNVKGLLNVQYAFDGDKVYVIEVNPRASRTVPILSKVTNIPMVEIAVEVMLGKKIKDFHYKQDMYKYSNIYAVKMPIFSNKKLSGVDVALGPEMKSTGEVLGVDFDKDKAIYKAFKASGVKILQEGNLYASVNDIDKKTSLNVIKKYGELGFSISASSGTYKFLSENGVKCSELDLDTAVEYIKDKKIDVVINTATQGYNTTRQGFILRHTALAHDKIVFTCLDTANAYINAILTEKNKENIEYRTMGEYLQEPAIRS
>NC_014328.1|WP_013239170.1|2797312_2798377_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MNSILYLEDGTVFMGKAIGHKAITAGELVFNTSMTGYQEILTDPSYRGQIITMCYPYIGNYGINYNFSQSDDIQAKGMVIKNMYNNTSHYLSENSFENFLKENKVVGISGIDTRSITKKIRSSGTMKCVICSENESISEIKRMLNSYENKDLVSQVSTNSIKYISGNGPKVALLDFGSKKNIIENLKDRDCDITIFPYNASYESIMSINPKGILLSNGPGDPKDLGEIMDIIKKLIGNLPIFGICLGHQLLSLALGGDTYKMKFGHRGGNHGVYDKDIDKAFITSQNHGYAVKRESLNKDSIEVTHFNLNDHTVEGIKHKTLPIFSAQFHPEGSPGPTDTDYLFDKFLRLMTLV
>NC_014328.1|WP_013239171.1|2798391_2799393_-|ornithine-carbamoyltransferase
MIDLKGKSFLTLKDFTKEEIKYFIDLAKKLKEEKYSGTEKKRLQGKNIALIFEKDSLRTRCSFEVSAYDEGANVVYIGAQGSHMGKKESVKDTARVMGRMFHGIEYRGFSQRDMEVLAEYSKVPVWNGLSDEDHPTQVLADFLTIEEHIAKPLKDVNFVYIGDGRNNMANALMIGASKVGMNFKIAAPKELFPEEELVKECKKVAEESGGTITITEDLYKAVEGADVLYTDVWLSMGEEKELWKKRIETLMPYQINSKLIEACKNENVKFMHCLPAFHNTETKVGEEIYKKFGYEALEVTEEVFEGPHSIVFDEAENRLHTIKAVMVATLSNI
>NC_014328.1|WP_013239172.1|2799684_2800587_-|fumarylacetoacetate-hydrolase-family-protein
MKFLTYLYKEKESIGILKNNSVIDFDNIFKNMGEKNPPKTMLELIDYLDDSKLNIIKECIDKKGIETIPINNIKIEAPIPYPRRNVFCLGKNYIEHAREIKITRIAGNGIPEVPIYFTKAASPAVGTVDNIEFSRKITNQVDYEVELAVIIGKDGKNIKKEDAEEYIFGYTIINDVSARDLQGKHIQWFKGKSLDTFCPMGPYIIHKTEVPFPVNLDISCTVNGEVRQKSNTKNLIFDIPYIISDLSKGITLKTGDIISTGTPSGVGMGFTPIKVLKQGDIVECSIEKIGTLVNRVVELH
>NC_014328.1|WP_013239173.1|2800633_2801257_-|class-I-SAM-dependent-methyltransferase
MSELSRRLNQCRKPTGEVGKFIASSMNKDHFEVTTWGLNKISIKQEDIILDIGCGGGRTINRLANIAKKGKVIGVDYSMDCVNWSKEFNKELIDEKRVEVYNANVEKLPFEDDKFNVVTAVETIYFWPDLLKSFKEVKRVLKSNGIFTVINEMYISDKFKEKNDEYMDKMTMHTPEQLKQLFVDAGYEDVSINVCEENNWMCCSGRA
>NC_014328.1|WP_013239174.1|2801308_2803477_-|DNA-helicase-RecQ
MLSSALEILHKYYGYSDFRKDQGKVIESILKGKDTLAVMPTGGGKSICYQIPAVLFKGVTVVISPLISLMKDQVDNIKDLGIGAAYINSSISHQDILHICESLIAGNIKMLYVAPERLESSEFCQIIKSIEVSQIAVDEAHCVSQWGHDFRTSYTYIWKFIESFSKRPVVTAFTATATKEVREDIVNQIKLNKPEVFISGFDRENLKIGCLKIGNRLGYMLKYIKTNEEQSGIVYAATRKEVDSIYERLKENNIAVARYHAGLSDKERKNNQEDFVYDRVNVIVATNAFGMGIDKSNVRYVIHYNMPKNIESYYQEIGRAGRDGEKSDCILMFAPQDVITQKYLIETSIQSPERRLNEYKKLQQMIDFVHYNGCLRKYILNYFGEQVDYEECGNCSNCVSEGEYVDKTIDCQKVLSCIYRMKREFGVNMIVDVLRGSSQRKVIQYGFDKLSTHGIMKNYSKEELSNFINTLIAHGYISLKEGEYPTVILNPRSIKVLKGEEKVTLKEIVKAKKITLNNDLFEILRVLRREIAGEESIPPYLIFPDTTLKELSSRCPINFEQMMDVSGVGQLKLKKYGERFLEAIKNYMDESKIKPQWIFKNELKNDKNVKEGKNLKLKTHEITAEMIKEHKDLEQIAKDRQITVSTVLSHITKYAEEKGVLDLNINFGGIFTDEEENQILKVTKKIGISKLKPIKEKLSEDISYDKIKAVILKDYILLDKNA
>NC_014328.1|WP_013239175.1|2803525_2803984_-|hypothetical-protein
MNENENMLHKFIKNYTENKQNRVQDLGTKKEKLEIQLKKEEEKLDKLSAIKEKLIAKEKSYDEVYSYLLQILKSRGILFDIPKSAVEIEEWDNLYIKKEQGAYSLIDKNQQVVYSIDKKYYDSIEHIVTNYKYSAVVVRKDAYFLKVQIRIL
>NC_014328.1|WP_013239176.1|2804069_2804366_+|hypothetical-protein
MDKVYTLILKYIKKIKKSIIFGMQNLNLFFDKKKTIDTAYKPMLDEKLKEVKDLKDKLNVMQNNNASFEKQIKHLRGSMMKKEKLIKNLQDIISQRQN
>NC_014328.1|WP_013239177.1|2804442_2804958_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MKNASNILDEILKAKEKRAQIQKELLNIFKTTLISFTLNIPGAEKNNESFAKLHKKGICLLEEELKENNIDILHKMLNSSAAGDEAFLNVDADAISVKKITVSIEENHELGRIFDFDVFTKAGKQISRTDLGVSERKCLLCGENAKVCGRSRRHSVEDLLNKIYLLMDKFL

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Click the colored protein region to show detailed information

Crispr_ID: NC_014328_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014328_2

3533683-3533774

Orphan

Consensus_repeat	Method
ACCAATGATTGCTATAATAAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014328_2

>merge|NC_014328|2|3533683-3533774|CRISPRCasFinder
ACCAATGATTGCTATAATAAATATAGCCACCGCAGTTGCCTGTCCTGCTACATAAGCATTTGTAACAAAACCAATGATTGCTATAATTAATA

>NC_014328|2|1|3533683-3533774|CRISPRCasFinder
ACCAATGATTGCTATAATAAATA	TAGCCACCGCAGTTGCCTGTCCTGCTACATAAGCATTTGTAACAAA
ACCAATGATTGCTATAATTAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014328.1\|WP_023162159.1\|3532565_3532736_+\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_122058589.1\|3541788_3542127_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|227160
NC_014328.1\|WP_013239851.1\|3526509_3527265_+\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239852.1\|3527320_3527932_-\|DUF975-family-protein	unknown	unknown	gnl\|CDD\|283754
NC_014328.1\|WP_013239867.1\|3538643_3538868_+\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_014328.1\|WP_013239864.1\|3536583_3537354_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|128898
NC_014328.1\|WP_013239863.1\|3536114_3536543_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NC_014328.1\|WP_013239856.1\|3530779_3531196_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226389
NC_014328.1\|WP_144289727.1\|3537956_3538178_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	unknown
NC_014328.1\|WP_013239862.1\|3535589_3536030_+\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239850.1\|3525889_3526117_-\|DUF3892-domain-containing-protein	unknown	unknown	gnl\|CDD\|379026
NC_014328.1\|WP_013239855.1\|3530334_3530691_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_014328.1\|WP_013239858.1\|3532052_3532349_+\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239869.1\|3539175_3539481_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NC_014328.1\|WP_081442083.1\|3534768_3535071_+\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|377797
NC_014328.1\|WP_023162158.1\|3528125_3529346_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NC_014328.1\|WP_013239854.1\|3529391_3529952_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239489
NC_014328.1\|WP_013239849.1\|3524788_3525769_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|240661
NC_014328.1\|WP_013239870.1\|3540174_3541074_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_014328.1\|WP_023162161.1\|3538395_3538560_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969

Protein	Function_ID	Function_description	E-value
NC_014328.1\|WP_013239867.1\|3538643_3538868_+\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	1.64228e-10
NC_014328.1\|WP_122058589.1\|3541788_3542127_-\|Abi-family-protein	gnl\|CDD\|227160	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].	1.8864e-10
NC_014328.1\|WP_013239870.1\|3540174_3541074_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.20237e-18
NC_014328.1\|WP_013239852.1\|3527320_3527932_-\|DUF975-family-protein	gnl\|CDD\|283754	pfam06161, DUF975, Protein of unknown function (DUF975). Family of uncharacterized bacterial proteins.	1.29698e-36
NC_014328.1\|WP_013239869.1\|3539175_3539481_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	0.00251902
NC_014328.1\|WP_081442083.1\|3534768_3535071_+\|DnaD-domain-protein	gnl\|CDD\|377797	pfam07261, DnaB_2, Replication initiation and membrane attachment. This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261.	5.97559e-13
NC_014328.1\|WP_013239856.1\|3530779_3531196_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	8.83049e-29
NC_014328.1\|WP_013239864.1\|3536583_3537354_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	1.82174e-11
NC_014328.1\|WP_013239850.1\|3525889_3526117_-\|DUF3892-domain-containing-protein	gnl\|CDD\|379026	pfam13031, DUF3892, Protein of unknown function (DUF3892). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 87 and 104 amino acids in length.	5.76692e-15
NC_014328.1\|WP_013239855.1\|3530334_3530691_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	9.91799e-26
NC_014328.1\|WP_023162161.1\|3538395_3538560_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	4.59812e-12
NC_014328.1\|WP_013239863.1\|3536114_3536543_+\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	8.635e-41
NC_014328.1\|WP_023162158.1\|3528125_3529346_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.35707e-166
NC_014328.1\|WP_013239854.1\|3529391_3529952_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	7.23932e-28
NC_014328.1\|WP_013239849.1\|3524788_3525769_+\|lactate-dehydrogenase	gnl\|CDD\|240661	cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains. This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0

>NC_014328.1|WP_023162159.1|3532565_3532736_+|hypothetical-protein
MHVCVNKYRESPDTPFPGSGHLKPEDEKLRRLTKELVINALNDAYQRGGRPKFHIY
>NC_014328.1|WP_013239858.1|3532052_3532349_+|hypothetical-protein
MVEMTNSKKWGIGSLSLIIAIFSIMFSFTFINGKYIGEHILNGLGVSFPIGIISLALFCASILIGHKYKNDYLAKSGKIVSIIFILLIIILSIISSLF
>NC_014328.1|WP_013239856.1|3530779_3531196_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MKNPEKTIGNLIDKSNVTIISYIDNGGFPISKAMLSPREREGIKTFWFSTNTSSNKVRYFRKNPKASVYFVNKRFFRGVSLVGIVEVLETLEAKERLWQDGDTIYYKQGATDPDYCVLKFTAKKGRYYSNFKSEDFDI
>NC_014328.1|WP_013239855.1|3530334_3530691_+|helix-turn-helix-transcriptional-regulator
MKLRNEYTCPLELTHDIIRGKWKPIILWQLGKGASSLAYLQEDIKGIGQKMLLQHLSELQDFGMVQKKQFSGYPLKVEYSLTEKGKRMLDVVVTMQKIGIELMKEDGKEAFLKEKGLI
>NC_014328.1|WP_013239854.1|3529391_3529952_-|phosphatase-PAP2-family-protein
MVTLIYKFDEYILSYIANNMHNQILDKVMIAFTSLGNKGLIWIAISIVLIASKKYRKVGIMVLTAIIIGSILGEGLIKHIVKRTRPFYFDPTIKLLVAKPASYSFPSGHTTASFAAASILSRYFKKYAPVIFTVAILIAFSRIYLYVHYPTDVLAGIVLGLVSSKITIYLFKRIKSYLLKKLKSSI
>NC_014328.1|WP_023162158.1|3528125_3529346_+|multidrug-efflux-MFS-transporter
MKIWKRNLIVCWLGAFVTALGLSQIAPIMPLYIKQLGIHDISTIEQISGVAFGVTFVVLAIFSPIWGYAADKIGRKPMLLRASIGMSIVISTMGLAQNIYQLIGLRMLQGVVAGYSTACMTLIATQTEKEHSGWALGVLSTASISGSLLGPLIGGYLDEILGLQFTFFFTGILMLIVFILTLIFVKENFIKSNKKVLSTKEVWKQLPDCHLTIVLFATSFILQLAFYSIEPIITVYISQLSRSSAHIALISGMAFSASGLASIIAAPRLGKLSDKIGPQKVMLASLIIAGLIFIPQAFVKNSWQLIILRFSLGFVTAGLAPSINTLVKKITPEALTGRMFGFNMSAFYLGTFSGSLLGGQIASYFGMKYVFFITSALLLLNGLLVYEKICKKLDSNAAAPLKEHMV
>NC_014328.1|WP_013239852.1|3527320_3527932_-|DUF975-family-protein
MSNASVRTSYQLRKVSRDQLKGNWGKCVLVCLVYSLIIIGINFIPHAGIIISFLIVGPLTLGVVGCFIKLVKSEKFQVEDLFDGFKNLGSAIILYIIMSIFIFLWSLLLIIPGLIASLRYSMAMYVLSENPDIPVLEALDESKKMMYGHKWELFCLLISFLGWIILSVVTFGIGFIFVCPYMQAATANFYQDVKLVPILNNQE
>NC_014328.1|WP_013239851.1|3526509_3527265_+|hypothetical-protein
MKKNIIKSSIVFMVIFALFFIASDKSTVHALNCYTVSLSNFKEVSQNIYVQPNTSDKDINNILSTISKSKNIVANLYGSFNAKPVFIISKDSTALKKFGVENKTGATQKTILGSYIVLGPEGLNTNVISHELTHSELAYRIHKSKSTKIPVWFDEGMAMQVDNRPKYSEGQWIKETQNGTKIPDMKTLNSYTQFYAADLDTRVLNYTLAKHEVHRWLSIVGQKGLSQLIDDVNNGNDFYKSYNTIEKENSK
>NC_014328.1|WP_013239850.1|3525889_3526117_-|DUF3892-domain-containing-protein
MKNSKIIKVRKDHEGKITDVLLENGEVLPLNHAIMMAREHIIEGVGVFKGKDGGEYLVADPDVMDVENLKDLPRF
>NC_014328.1|WP_013239849.1|3524788_3525769_+|lactate-dehydrogenase
MKVLAYSHRQDETEYFKKFSKKYDVEVVLCDDPPTMENADLAKGFDCISIITTKISDKLVEKFHEIGVKFISTRTIGYDHIDIKKAKELGVHIGNVNYSPNSVADYTIMMILMAIRKTKAIIERSNVQDYSLKGVQGKELHNLTVGVIGTGRIGRAVISRLSGFGCKILAYDLYENEEIKKYVTYVTLEDLFKNSDIITMHAPATDDNYHMINKDSIALMKDGTFIINIARGSLINTEDLIDAIENKKIGGAAIDVIENEFGLCYNDLKCEILDKREMAILKSFPNVIVTPHTAFYTDQAVSDMVEHSILSCVLFMEGKENPWQIE
>NC_014328.1|WP_081442083.1|3534768_3535071_+|DnaD-domain-protein
MLAFFEENIYPVGEAVREKIRMWSGVIDCDVIILAVEEALKYNVRNINYVDRILQSWSKKGLKTANDVKRYKSIWESRNTEHREKYRQYDFKELERKLFG
>NC_014328.1|WP_013239862.1|3535589_3536030_+|hypothetical-protein
MESVSELIERLYSKDNKAAYQALQILESESEKSNAVYKFFDRFAEMIENSNSYIRTRGIVLISVNAKWDTENKVDEIIDDYLKHILDEKPITARQCIKSLPSIAKYKSDLVECIREALLKVDVTIYGDSMQTLIYKDISSSLKKIK
>NC_014328.1|WP_013239863.1|3536114_3536543_+|N-acetyltransferase
MIRDFRTTDIDRVMHLWLSTNILAHNFIDSEYWQNNFESVKEMMPKASIYVYEQNGEIQAFIGLMKSFIAGIFVSSDFQSKGIGKLLLDYSKGKHNELSLCVYKKNDRALRFYLKEGFTASAEQVDENTGEIEFVMRWKNSV
>NC_014328.1|WP_013239864.1|3536583_3537354_+|methyltransferase-domain-containing-protein
MDLRLKFNEDEYNYDKYRPTYPEELFSDIINYSRISSGYEALEIGIGTGQATLPILQSGCRVTAIELGNNLTRYVKNKFKNYMNFNVINADFIEYTIKTEAFNLVYCATAFHWIPLEQGYVKVRNILKDDGTIALFWNHPFPNRQDDISNIVNRKIYNKYRPSDKEVREFNESDCQRRINELERFGFKDIIYRLYHRKRTLTSNGYIHLLNTYSDHRVLPVEVKNNFEMDMKNAIDEIGGKINIYDTIDLYLAKKK
>NC_014328.1|WP_144289727.1|3537956_3538178_+|sigma-70-family-RNA-polymerase-sigma-factor
MEDIILELCEVKPIKLSELVKLLNRNDVGLRSNYLNKMEGRTLKETAEILNIKYRHAIEIKKSALNKLKKYLK
>NC_014328.1|WP_023162161.1|3538395_3538560_+|YvrJ-family-protein
MYDQLVSLISTIGFPIAVSIYLLIRFENKIDLLVKSIEDLREDISAVIKNQEKK
>NC_014328.1|WP_013239867.1|3538643_3538868_+|DUF1659-domain-containing-protein
MAAKSIKLSSTLSIVEKTGLNKQGKEILKKVTLGKIAMDAADQDVYDVVKTVGDILTYPVNEIQKVDNTVITNA
>NC_014328.1|WP_013239869.1|3539175_3539481_-|DUF3267-domain-containing-protein
MNMSEFIIILSIINSVIHEILHGLAYKLFGVKIRFEFKLPYAYTMETSGLPIDIFKFTIILLLPLLLISLTCLFLPTWLGEIFFIINLLGSAGYIHVTVSS
>NC_014328.1|WP_013239870.1|3540174_3541074_+|EamA-family-transporter
MKLKIYFILSMMIFGTIGIFVRYIDLASSEIALLRGFIGSLFLLTITIVNKQKISWTNIKNNIPVLLLSSFALGFNWIFLFQAYKHTTIANASSSYYFAPVFVIVMSPIVLKEKISLKKAACISISVFGMFLIVQNRGNGGTEYNHLLGICYGITAAVFYATLMLTNKFIKNMNGLEITLLQLSLATVMLIPYVFVTERVNLFQITGLSVACIIILGIIHTGLGFYLFFYGMKGLRGQSIAALSYIDPITSLFTSFIIFGENMTVFQIIGAVLLLGSTFISEISKNYDCSSKKNKGYIE
>NC_014328.1|WP_122058589.1|3541788_3542127_-|Abi-family-protein
MANDFIGVNHKIVVSWLRSSSILRNICAHYGRLYNRKFNLVPAIHEDLSNYKIEKNKLFANVVAIKYLLPYKDELDRLINDLDKAIQKWARFIDLSKKPSFYFFNCSKDDED

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Crispr_ID: NC_014328_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014328_3

3581508-3581592

Orphan

Consensus_repeat	Method
CGGTTCGCATTGTTAAGAGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014328_3

>merge|NC_014328|3|3581508-3581592|CRISPRCasFinder
CGGTTCGCATTGTTAAGAGGCGCGGTGGATTTACAATAATATAACAAGTTTAATGACTTACACGTTTCGCATTGTTAAGAGGCGC

>NC_014328|3|2|3581508-3581592|CRISPRCasFinder
CGGTTCGCATTGTTAAGAGGCGC	GGTGGATTTACAATAATATAACAAGTTTAATGACTTACA
CGTTTCGCATTGTTAAGAGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014328.1\|WP_013239908.1\|3585423_3586866_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_014328.1\|WP_013239911.1\|3588229_3588655_-\|YjdF-family-protein	unknown	unknown	gnl\|CDD\|378596
NC_014328.1\|WP_013239900.1\|3575484_3579051_-\|BREX-system-P-loop-protein-BrxC	unknown	unknown	gnl\|CDD\|380283
NC_014328.1\|WP_013239905.1\|3583220_3583862_-\|DUF3786-domain-containing-protein	unknown	unknown	gnl\|CDD\|372241
NC_014328.1\|WP_013239914.1\|3591829_3592372_-\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239906.1\|3584004_3584370_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_014328.1\|WP_013239895.1\|3566255_3566501_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_014328.1\|WP_013239903.1\|3580565_3581477_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|227160
NC_014328.1\|WP_013239894.1\|3565881_3566259_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NC_014328.1\|WP_029702213.1\|3590235_3591780_-\|aromatic-amino-acid-lyase	unknown	unknown	gnl\|CDD\|376303
NC_014328.1\|WP_013239910.1\|3587626_3587842_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NC_014328.1\|WP_013239898.1\|3569250_3571812_-\|BREX-1-system-phosphatase-PglZ-type-A	unknown	unknown	gnl\|CDD\|274259
NC_014328.1\|WP_013239902.1\|3579742_3580351_-\|DUF1819-family-protein	unknown	unknown	gnl\|CDD\|378066
NC_014328.1\|WP_013239912.1\|3588831_3589980_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340891
NC_014328.1\|WP_013239899.1\|3571876_3575419_-\|BREX-1-system-adenine-specific-DNA-methyltransferase-PglX	unknown	unknown	gnl\|CDD\|380294
NC_014328.1\|WP_013239904.1\|3582089_3583121_-\|epoxyqueuosine-reductase	unknown	unknown	gnl\|CDD\|224516
NC_014328.1\|WP_013239901.1\|3579077_3579662_-\|DUF1788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378040
NC_014328.1\|WP_013239897.1\|3568727_3569228_-\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_029169887.1\|3587259_3587526_-\|hypothetical-protein	unknown	unknown	unknown
NC_014328.1\|WP_013239896.1\|3566677_3568708_-\|protease-Lon-related-BREX-system-protein-BrxL	unknown	unknown	gnl\|CDD\|131701

Protein	Function_ID	Function_description	E-value
NC_014328.1\|WP_013239908.1\|3585423_3586866_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.26626e-72
NC_014328.1\|WP_013239911.1\|3588229_3588655_-\|YjdF-family-protein	gnl\|CDD\|378596	pfam11208, DUF2992, Protein of unknown function (DUF2992). This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologs of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesize nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches.	2.02042e-61
NC_014328.1\|WP_013239900.1\|3575484_3579051_-\|BREX-system-P-loop-protein-BrxC	gnl\|CDD\|380283	NF033441, BREX_BrxC, BREX system P-loop protein BrxC. BrxC is a P-loop-containing protein, and probable ATPase, from BREX (bacteriophage exclusion) systems of type 1.	0
NC_014328.1\|WP_013239905.1\|3583220_3583862_-\|DUF3786-domain-containing-protein	gnl\|CDD\|372241	pfam12654, DUF3786, Domain of unknown function (DUF3786). This presumed domain is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 201 and 257 amino acids in length. Some proteins also contains an iron-sulfur cluster.	1.11959e-59
NC_014328.1\|WP_013239906.1\|3584004_3584370_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.66065e-12
NC_014328.1\|WP_013239895.1\|3566255_3566501_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	7.24638e-06
NC_014328.1\|WP_013239903.1\|3580565_3581477_-\|Abi-family-protein	gnl\|CDD\|227160	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].	1.85148e-55
NC_014328.1\|WP_013239894.1\|3565881_3566259_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	1.66278e-28
NC_014328.1\|WP_029702213.1\|3590235_3591780_-\|aromatic-amino-acid-lyase	gnl\|CDD\|376303	pfam00221, Lyase_aromatic, Aromatic amino acid lyase. This family includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, histidine ammonia-lyase, EC:4.3.1.3, and tyrosine aminomutase, EC:5.4.3.6, activities.	0
NC_014328.1\|WP_013239910.1\|3587626_3587842_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	2.34835e-26
NC_014328.1\|WP_013239898.1\|3569250_3571812_-\|BREX-1-system-phosphatase-PglZ-type-A	gnl\|CDD\|274259	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.	0
NC_014328.1\|WP_013239902.1\|3579742_3580351_-\|DUF1819-family-protein	gnl\|CDD\|378066	pfam08849, DUF1819, Putative inner membrane protein (DUF1819). These proteins are functionally uncharacterized. Several are annotated as putative inner membrane proteins.	1.07821e-62
NC_014328.1\|WP_013239912.1\|3588831_3589980_-\|MFS-transporter	gnl\|CDD\|340891	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins. This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70611e-26
NC_014328.1\|WP_013239899.1\|3571876_3575419_-\|BREX-1-system-adenine-specific-DNA-methyltransferase-PglX	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	0
NC_014328.1\|WP_013239904.1\|3582089_3583121_-\|epoxyqueuosine-reductase	gnl\|CDD\|224516	COG1600, COG1600, Uncharacterized Fe-S protein [Energy production and conversion].	1.23374e-84
NC_014328.1\|WP_013239901.1\|3579077_3579662_-\|DUF1788-domain-containing-protein	gnl\|CDD\|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	3.28786e-52
NC_014328.1\|WP_013239896.1\|3566677_3568708_-\|protease-Lon-related-BREX-system-protein-BrxL	gnl\|CDD\|131701	TIGR02653, putative_ATP-dependent_Lon_protease, conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]. [Hypothetical proteins, Conserved].	0

>NC_014328.1|WP_013239903.1|3580565_3581477_-|Abi-family-protein
MEDEIKLKEPRTFEEQLEILKDKHMKIDNDDKAINVLKITNYYRLTAYALQFNKNDDYAYKISFTDMYKLYEFDKALRSLILDILEDIEIAFRTYMAYSLSIKYGTEAYKNSDLFKDERFYNGYDDVAGKHHKGLIDEIKLEIHNNRKELFVKHHLIKYKGRFPIWVLVEIFSFGMLSRTYSNLNTADQKDISRNCFNINNQLLESWAENLSYIRNICAHYGRLYNKKMAIIPKLHNRYNEYKESINSNRLFISILGIKELTKNGSKWGIFQNKLKKLLNEYKDVIDLRLIGFPENWVEILSK
>NC_014328.1|WP_013239902.1|3579742_3580351_-|DUF1819-family-protein
MTKQLEYKSTIKSMPYLYIETKKAASLILKGFNDYEIKNMSIKENIFQMKSEARKKEIASITLKRLKSLDEFLLDKLVNGDLETSKQIVIYMIMKTDRLFFEFMSEVYRNKNILREKYITDSDFNVYFQRKCEQSDTVASWKEYTFYKLKQVLTRILFEAGFIKNQKGDKEITIPIVDCDLAQHLKEIGDGIYLEVMLGHKS
>NC_014328.1|WP_013239901.1|3579077_3579662_-|DUF1788-domain-containing-protein
MKTIYQRLDGIIPKITDKSFRENKGLGNEISYYIFDYEPKYELLVRDHIQFIKQKISDEYSNIHIKEFDLYEIILETMDKKGYLQKNIEMEKKKGSKYVFNAIRKSLRLTLKNDMVLDYIVNRVEPNDIVFITGVGKAWPIMRSHTVLNNLHNAIDQVPVVMFFPGEYDGLELILFNEIKDDNYYRAFQLIDKY
>NC_014328.1|WP_013239900.1|3575484_3579051_-|BREX-system-P-loop-protein-BrxC
MELKKMFLKDIERDIKGVIKVGQDDDSDIFQELDEYVVTNELLGHFGDFFEAYKKGILDHTDKMGVWISGFFGSGKSHFLKILSYLLENRVVNGKKSIEYFDNKVYDPMVVADMKQAGDITADVILFNIDSKSESDSKADKDSILKVFNKVFNEMQGFCGSIPWVADLERQMVKDEVYEDFKAEFEKISGSSWEDSREDFFYEEDSIVEALSKTTKMSEETARDWYNKAEENYSLSIEKFAQRVKEYIETKGKNHHVLFLVDEIGQYIGSDSQLMLNLQTVVEDLGTYCGGKAWVIVTSQQDIDSVTKVKGNDFSKIQGRFNTRLSLSSANVDEVIKKRILQKKPGAADSLKLLYEDKCSILKNLITFSNDTAEMKVYENENDFAEVYPFIPYQFNLLQSVFTGIRIHGASGKHLAEGERSLLSAFQESSIKYENEEMGVLIPFSAFYDTIESFLDANIKTVIIHAKNNSKLNEEDVEVLKLLFMIKYVKEIPSNLENISTLLVKHIDDDKLEIKKKVEESLKKLVRQTLIQKNGEEYIFLTHEEQDVNREIKSITIDMGEVIQKVGGTIFEEIYTEKKYRYSSKYDFPYNAMIDDIPRGQQNNEIGLKVITPYFETGIDLTHQELKLMSARENNVIIKLPNDTTFLEEMEEILKIQAYLRVKSGTASTQVIEDIKTRKSREVSERKDRVKNLLIEGLKTAEMFANSELLDIKEKNPVERINDAFKTLIDTLYSKLNYIKEYIDSSRELQDILLNNNVQGSFIEEKNKLAIDEVNSYIERNTSRNIPMTMKGIIGLYSKAPYGWVELDIAAIIIKLFKAQEIKIEYNSQYLTTDDRDVVKYLTKRDYLDKVLVKKRAKTPVKYITNVKELCKELFNYSAVPADEDGLMSRFKDLTQGEIASIRELLVYYKQANYPGKDILEEGKRIFDEVISIKDTMEFYEKCYELKDDFLDYADYSEDVKKFFKNQKKFFDDALEKIEIYNKNKTYVLDEQAIDLIQKINEIVRSKEPYSKIPQLPGLIEEFSNRFTDLLEVECEPVRKVIQLDCEKVLNELSLYEFKDELSAKFQKRFDDLISRLDRANNFYEAIAMKEESDRLKMRSFEEISKEVERRKPPVVPNPEPVVGGGADIIRGEKPPVYKIKKTKNISIANILHGAKTIETEADIDELLKDIKAKLKQELNEDTRIKLV
>NC_014328.1|WP_013239899.1|3571876_3575419_-|BREX-1-system-adenine-specific-DNA-methyltransferase-PglX
MDKSAIKNFAVNARVKLKEQIEQKAYTFGITKNEIKSVETFEDAFEVNGNRYDKRLLKHRESLVKKINEKGFDQVIEEVAYTWFNRLIAIRFMEVNEYLPSGIRVLSSTDSNKAEPDIIREAANLDFENLNVDLIYKFQDENNTEELFKYLLIKQCNELGKIMHVVFEEIEDYTELLLPDNLLQEGSIIRDLVTSITEEDFKEQVEIIGWLYQYYISQKKDEVFADLKKNKKITKENIPAATQLFTPDWIVKYMVENSLGRLWLESHPDDELKAKWKYYLEEAKQEPEVMKQLQVIRDKNKDLKPEDIKFLDPCMGSGHILVYAFDVLYDIYKSAGYSEREIPKLILEKNIYGLDIDDRAAQLSYFAVMMKARSYSRRIFRKKIDLNVCSIQESNGFSKEAIDFFASGNELLKEDVEYLINVFDDAKEYGSILEVKGIDFDVIERRVEEIRNSGTNDLFELQYKNIILERIPDLIKQGKILSQKYDVVCTNPPYMGKKSINDRLSDYLNKNYPDTKSDLGTVFMELCINLADRLGYISMINIPSWMFLTSYEKLRKKIINNHTIINMLHNGRGVFGSDFGTTAFVIRNNFIDKYVSYYKKLFQKQGEVDSITEKEKIFFSNKGIYINNQQDFKVVDGNPIAYWLSKDMKEAFKRGIKLANIAEVKQGLATSDNDRFVRMWMEVNYNKIGFNIKDRKENNYKSSKWFPYNKGGQFRKWYGNNIYIVNWENDGYEIKNFKKSVVRNENYYFREGITWTLISSSLFGVRISPNGYVFDVNGMTLFIDKSKIYYVLSFMTSKVCFEVLRIINSTMAFQVGDISRLPIILNESYVSIVNVLCEENINISKNDWNMFETSWNFQLHPIISHRNVSKTLKDAFYNWSVFSNEQFNIIKSNEEELNRIFIDIYGLQDELTPDVEEKNVTIRKADKIRDIKSFISYSVGCMFGRYSLDEEGLIYAGGEFSQDRYKTFKVDIDNVIPITDDEYFEDDIVSRFIEFVKITFSEETLEENLDYIADTLGKKGNETSRQTIRRYFLKDFYKDHLKTYQKRPIYWLFDSGKNDGFKALIYMHRYDVGTVARVRTDYLHLLQRKYEAEVNRLDMIMENANVSTREKNEARKKKEKIQKQILECIQYDQVIAHVANQKISIDLDDGVKVNYAKFQGVEVPQGEGKKPLKANLLAKI
>NC_014328.1|WP_013239898.1|3569250_3571812_-|BREX-1-system-phosphatase-PglZ-type-A
MNLKEIKNVLTETFNKELDCGKKRHIVFWYDEEGEFAEDIDELSPDNVRVLKLTENNSYAIKYEIEKVDKISHFLIYANMQKPSPRENYLLDILKYSTEFSTDKTTAIMRELGVNDDSLKGVFKRYLKFFNNKERYASFMKYEIENYTEEKIDIAVLSVLCKLDVCDIESVIKALFAEELKDNNKYLEAIEKFGDVKAFWRLAEKYYGFNLEDKNLEKLILFFMVTNLSYTLDEAIPRTWGKYVSSKKSDCIVFMSHFMSHSVDSKIYDALSNKFEDKLNIQLYIKEWDIDNYIKCDVFKAFDKAIISKLVEQLLDDIGEYDKYTEIISARRTTHFFNDFEQEYEAINAAVELFKVKKNIGEFIRQYKVQEFFEKYTNENYVIDKAYRRFYAAFDKLEDKEALVELREKVENTYVNWFVDELSVKWSNAISDELQDNWNIPLITEQKDFYNTFIRQHVIKGERVFVIISDALRYEAAKEFSDILNIERKGFTEIYAMQGVIPSYTKLGMASLLPNDKIEIDDKAEIIVDGINSAGTDNREKVLLKYSENSVAIQYKDLIEMSRSEFRKTFNGKKLIYIYHNSIDAVGDHAATEREVFNAVDETFKELKTLINDLINNVSASNIYITSDHGFIYKRGLITESDKTSKNAEDAAVEKRRFIISDKKQNMEGTICFSMDYILGKDSGKYVTVPRGSNRFKVQGEGANFVHGGATLQEIVVPVIKFKNDRSKNGKSDTRKVEVKLTNISRKITSVITYLEFFQTEKVEDKKIPVRLKIYFTDEEGNRISNENIIIADSKSTKPEDRSYKEKFILKSMTYDKKKKYYLIMEDEEEAVENIYEKIPFIIDIAISNDFEF
>NC_014328.1|WP_013239897.1|3568727_3569228_-|hypothetical-protein
MEHILITYSAECAEEGHVDPNFTQLVYGNSRKNGDIIKEHIIPGSYIFFNANIEQKRFITAYFEVEKILIKGQHDSEINALKCDAKVDEVVVIGDRNHSKILTAPLLLDRALMGKLTTYGADDAYFNRKLAAGCSELEAIKDKTLNPRVITEQEKELLINLCMNRG
>NC_014328.1|WP_013239896.1|3566677_3568708_-|protease-Lon-related-BREX-system-protein-BrxL
MDELSKKLNTYFQGRVVRKDLTKKIKEGANVPVYVLEYLLGMYCATYDEDSINDGVERVKKILADNFVRPDEAEKIKSKIKELGRYTVIDKVSVKLNEKKDVYEAEFSNLGLKGVVISSHYVREFEKLLSGGIWNIVKISYFYDETARDVSPFNIDSLTPIQMPNLDIDEIMEGRKNFTKEEWIDILIRSIGMEPTQLDYSVKWHMLERIVPLVENNYNLCELGPRGTGKSHIYKEISPNSILISGGQTTVANLFYNMASRKIGLVGMWDAVAFDEVAGITFKDNDGIQIMKDYMASGSFARGREEKNASASMIFVGNINQSVEVLLKTSHLFEPFPEAMANDSAFFDRMHYYLPGWEVPKMRPEFLTDEYGYITDYLSEWCREMRKHSFTDAFDKYFKLGNNLNQRDVIAVRKTVSGLTKLIYPNGEYNKDDIAEILRYALVGRRRVKEQLKKIGGMEFYDVNFSYIDNETMEEEFVSVPEQGGGKIIPEGIGKAGHLYTIGRGRSGMIGAYKIETKVVNGSGKFEKTGLGSDREAKEAIETAFRFFKANSKNISGTISTGTKDYLMHVQDIHGVGLTSELALTAFIALCSAAMNRPAQSQIVVLGSMSIGGTISKVEELANVLQVCFDSGAKKILIPMSSAVDIGIVPPELFAKFQISFYQTPEDAVFKALGVE
>NC_014328.1|WP_013239895.1|3566255_3566501_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MLVNTQKIISMSEANQNFSKVAKLVDESKSVVIMKNNKPKYVLLDFDEFSKEASSEEENLDKIADKILKENMYAFKELADR
>NC_014328.1|WP_013239894.1|3565881_3566259_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MKYISVEYILKLHEKMINTTGGSHGIRDINLLKSAIENSKATFDGQDLYPEIQDKCANICFNIINNHPFVDCNKRTGLYVMLILLEYNKIKIKFTQGELIDMGLDIAKGELKQEGIVLWIKSHVV
>NC_014328.1|WP_013239904.1|3582089_3583121_-|epoxyqueuosine-reductase
MNIIEQMIQKKAYELGYEKCGIIPIGLMDGYAKKFEERIEKVPKSKMFYQNQQRLVNTLATYPWAKSVVVLAVQYGKYKIPEVVKGHIGKSYLFDIRVDKNTKEYQNNRALEKYMQELGLKVETNQKFGVVGMRWAALQAGIGIVRRNNFLYTESGSWVHLEAWVTDREMELKETNDVLQCPKNCNRCMASCPTKSLSDPYTMSPTTCISFLTTFGGRNLPQEPLSRTFGNCIYGCDICQDVCPMDKGKWKEEEEFPGLAELSSVLTPENILNMEEGFYRKKVQPKFFYLSSEELWKWKVDVLCYMRNNYKETYRPLIINACNNENYKVREMAYSICKELCLQ
>NC_014328.1|WP_013239905.1|3583220_3583862_-|DUF3786-domain-containing-protein
MQNYNKNNYDLCYENLCIEFAKHDPEEMANKSGAKYNFEKKEFTLTYLNREYIISYPQGRIVLKNDTQRNLFRDNVMKKMLIISYFHRCTKATHQNKWVPYRELDGAVLYNVSGGITTNKLSQFFGHKGDLFLKVGHILGAKKISYGDIALKIDVFPNIPIILVLWLADDELEANSNMLYDPSVVKELHPEDVALLSSLLIDEVIEIAKQISE
>NC_014328.1|WP_013239906.1|3584004_3584370_-|MarR-family-transcriptional-regulator
MTKVYDEFLVPSNLKISQLALLRHINQLGPVSVSDLAVVIRLDRTTLVRNLKPLEKSGFVEDISTEKTRNRQLRLTDKGIETYKYSEELWEKAQSFLEEYLGKDNISTFTTLLSKIEALVS
>NC_014328.1|WP_013239908.1|3585423_3586866_-|MFS-transporter
MKKIESEMNKKKWLILITVVSATFMSTLDGSIVNVALPDMASKLNVGMSGITWVVTSFLITVAATILIFGRLGDMIGKTKVFKFGVVLFTMGSLLCGLTSSLPLLVTARVIQAVGASATMATNQGIITHVFPANERGRALGVLGTFVALGSMAGPPIGGIIVSAISWEYIFLINIPIGIIVFILTLKIFPKAHTTSDEKLDIKGALLFVVTTVSLFGALGQGQVKGYDNIFIILAFVISFITFVLFIILEHKISMPILQLSIFKNSLFSISIICAFISFIAISASNIILPFYFQDTLKFSPAASGMLMMVSPIVLSVVAPFSGYMSDKIGSEILTLFGLSFTSLGLFFLSSLNERSSVLLIIGYIVIMTLGNGMFQSPNNSLVMSTVSRDKLGIAGSVNALIRNLGFVLGTSLSTLLLYNRMSHKIGYRVVDYIKGRDDVFIYGMRSVYISVGIMCLFGVLITALRLYYSKKLRGLYMKG
>NC_014328.1|WP_029169887.1|3587259_3587526_-|hypothetical-protein
MAMAVASITNGIYHKFLVKEKDKDERNIAIENRAKAKAFDIMEIVFGILVISYVFLRVNLLTIFLAIAAYLVIFASYMVSFSKYHKEM
>NC_014328.1|WP_013239910.1|3587626_3587842_-|helix-turn-helix-transcriptional-regulator
MKNRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIFIYEESSENENF
>NC_014328.1|WP_013239911.1|3588229_3588655_-|YjdF-family-protein
MTANIKLTVFFEEPFWVGVFKRWDSDTIYLSRVVFGAEPKDYEVYDYILKNFNDLKFSKPLDINYSDKSIDKKINPKRLQRKIKKETKDNGIGTKAQIAMKQQYEDFKLKIKKVSREKKEEEKEKKFKLRQQKKLMKHRGH
>NC_014328.1|WP_013239912.1|3588831_3589980_-|MFS-transporter
MEKNFKAMVTIFIGYFLLSLFSNTLSPFITTIKSTYNVSSYVIAFIPSVVYCAALITNIVGAKLMPWLGIKNGLYLGIVFEIFASLIIVFSKSFYVILTGYFMAGLATGMACLYLSTMLSLLPQKYQKFSFANACFGLGGILILPIDRFILKMGIKFNYTYIIHILLISFYIILVSKMDRRTFYKSNSKCNTSFSILKNPMILLLCIAVFFYVGAEISTTNWTGTFLKKYYGISKIEVPNILLSFWILFTIGRSLGDKFLERVGQLRFLSISPLISILGIIILLFGKSKLQALTGFAIIGISISIMYPALQGYIVQHVTEKNIPSASAVTMIFNNLGATFLTYIIGFAGGIKITYVFIIQILFYIYIALISVYYRIFKPGKV
>NC_014328.1|WP_029702213.1|3590235_3591780_-|aromatic-amino-acid-lyase
MQYAKKLKQVVIGCKDITLEEFIAISRYKATVILSDAFRERVTKSRGLVEKFLKEKRVIYGLTTGFGDNCDKIIEPEDAIILQKNILRSHACSIGEALEGECVRAILLMMILNMGQGYSGVKLDTIETIASILNSNIVPFAPCHGSVGYLSVEAHISLVLIGEGKAFYNGKLIDGYEALQLEGIKPVELGCKEGLALVSGTTSVTALAALAIYDGIKAAKTADIIGAISLEALRGTTRAFDPRLQSVRPHEEQNMTARNILRILKDSEIAIKYKDYRLQDALSLRCIPQLHGAAKKTLKDAAKTIITEINSCCDNPVIYPIKDDGVALMGCNADGSYVGIEADSSCIAMTSIAKMSERRIDRLVNHHISELPAFLIEKTGLNNGFMIPQYTAAGLLGEMRILSTPASIDNTPTCANQEDYVSMGYNASRKAYKCVGLLENILSIELLNALQAVEFLKPLKMSTATKSVYDLIRKVVPKIEDDEHLYPYIEYINNQIHEGNILEEVEDVIGVLEI
>NC_014328.1|WP_013239914.1|3591829_3592372_-|hypothetical-protein
MDIRAFPIKVEKQEAEKRAQAMGGVLWKVIFLNKKLSEVRKHFVEFKLVTLEIIHKPTVIERMVSKKAHEKKQTITLLANGSTGSVSWVDSMPDIIELKEVDSNAIQLSDKDDDYLILKARKLALKVVHRHVGGIPEFKVLKIESVFRPYWVALYGDVAEGNKVRYMPIAADGCGSHRSM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

351367 : 381439

Erysipelothrix_phage(42.86%)

head,tail,terminase,portal,protease,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041705000.1\|351367_351709_+	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	7.9e-24	63.7
WP_013237019.1\|351701_352865_+	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	7.1e-173	76.5
WP_013237020.1\|352842_353391_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	6.0e-90	89.4
WP_013237021.1\|353468_355418_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	1.2e-268	67.6
WP_013237022.1\|355533_356307_+	phage repressor protein/antirepressor Ant	A0A2H4PQV4	Staphylococcus_phage	1.0e-79	56.1
WP_013237023.1\|356308_356743_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	8.2e-50	63.9
WP_013237024.1\|356739_359103_+	phage-like protein	A0A1W6JQ82	Corynebacterium_phage	1.3e-234	50.7
WP_013237025.1\|359323_359605_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	6.1e-30	71.1
WP_013237026.1\|359585_360947_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	9.8e-174	75.4
WP_013237027.1\|360939_361161_+	hypothetical protein	NA	NA	NA	NA
WP_013237028.1\|361162_361591_+	hypothetical protein	A0A2K5B275	Erysipelothrix_phage	4.2e-14	34.5
WP_013237029.1\|361705_362083_+	HNH endonuclease	Q38456	Bacillus_phage	3.4e-28	50.4
WP_013237030.1\|362359_363604_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	8.7e-145	59.9
WP_013237031.1\|363672_363984_+	hypothetical protein	A0A2K5B282	Erysipelothrix_phage	5.2e-30	61.8
WP_013237032.1\|364223_364940_+	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	5.6e-19	31.7
WP_013237033.1\|365098_365365_+	hypothetical protein	NA	NA	NA	NA
WP_013237034.1\|365412_365883_+\|terminase	phage terminase small subunit P27 family	Q6DMU4	Streptococcus_phage	4.0e-58	70.5
WP_013237035.1\|365885_367436_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	8.7e-227	72.3
WP_013237036.1\|367447_368728_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	1.4e-68	39.6
WP_013237037.1\|368720_369560_+\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	4.2e-58	52.7
WP_013237038.1\|369556_370840_+\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	7.6e-51	33.7
WP_013237039.1\|371005_371488_+	hypothetical protein	NA	NA	NA	NA
WP_013237041.1\|371607_372060_+	hypothetical protein	NA	NA	NA	NA
WP_013237042.1\|372127_372700_+\|head,tail	phage head-tail connector protein	C7BGH1	Burkholderia_phage	1.4e-09	29.6
WP_013237043.1\|372696_373023_+\|head	phage head closure protein	A6M954	Geobacillus_virus	1.6e-13	40.8
WP_013237044.1\|373015_373396_+	HK97 gp10 family phage protein	W8CZ44	Bacillus_phage	4.4e-15	32.8
WP_013237045.1\|373392_373716_+	hypothetical protein	A0A0K2CZA4	Paenibacillus_phage	1.4e-17	45.5
WP_013237046.1\|373733_374564_+	phage protein	A0A2H4J8F3	uncultured_Caudovirales_phage	2.4e-29	43.5
WP_013237047.1\|374610_374895_+	hypothetical protein	A0A288WGA9	Bacillus_phage	6.2e-06	37.5
WP_013237048.1\|375096_377862_+\|tail	phage tail tape measure protein	Q9G097	Lactococcus_phage	3.1e-86	60.1
WP_013237049.1\|377863_378571_+\|tail	phage tail family protein	Q8W5Z6	Listeria_phage	2.0e-16	28.8
WP_013237050.1\|378649_379477_+	hypothetical protein	NA	NA	NA	NA
WP_013237051.1\|379585_381439_+\|tail	phage tail protein	A0A1B1P7P0	Bacillus_phage	9.6e-39	34.6

DBSCAN-SWA_2

576494 : 584950

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013237213.1\|576494_577874_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.1e-66	34.9
WP_013237214.1\|577933_578989_+	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	3.6e-75	44.0
WP_013237215.1\|579127_580006_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	4.2e-93	58.2
WP_013237216.1\|580026_580914_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.6e-36	35.8
WP_041705260.1\|581099_581648_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	5.7e-48	54.2
WP_013237218.1\|581834_582038_-	hypothetical protein	NA	NA	NA	NA
WP_148222365.1\|582237_582921_+	hypothetical protein	NA	NA	NA	NA
WP_013237220.1\|582964_584506_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.9e-72	36.2
WP_013237221.1\|584593_584950_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.2e-20	46.7

DBSCAN-SWA_3

1226303 : 1233632

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013237791.1\|1226303_1227182_+	tyrosine recombinase XerD	A0A1B1IQT7	uncultured_Mediterranean_phage	4.7e-12	26.3
WP_029170125.1\|1227316_1228528_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	7.4e-32	32.0
WP_013237793.1\|1228686_1229853_+\|tRNA	CCA tRNA nucleotidyltransferase	A0A219YCT8	Aeromonas_phage	6.1e-23	35.9
WP_013237794.1\|1229853_1230609_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.1e-12	28.2
WP_013237795.1\|1230598_1231174_+	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	6.9e-20	36.0
WP_013237796.1\|1231228_1231669_-	GerW family sporulation protein	NA	NA	NA	NA
WP_013237797.1\|1231736_1232237_-	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_013237798.1\|1232528_1233632_+	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	1.2e-07	29.9

DBSCAN-SWA_4

3431565 : 3479425

Clostridium_phage(72.09%)

tail,terminase,portal,capsid,integrase

attL 3462380:3462395|attR 3479609:3479624

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013239739.1\|3431565_3432327_-	N-acetylmuramoyl-L-alanine amidase	A0A1B4XWW6	Tenacibaculum_phage	1.3e-05	30.6
WP_013239740.1\|3432344_3432662_-	hypothetical protein	NA	NA	NA	NA
WP_013239741.1\|3432709_3433363_-	hypothetical protein	NA	NA	NA	NA
WP_013239742.1\|3433378_3434464_-	hypothetical protein	A0A0A7RU66	Clostridium_phage	4.1e-106	54.3
WP_013239743.1\|3434477_3435473_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	2.6e-123	63.0
WP_013239744.1\|3435484_3435748_-	hypothetical protein	A0A0A7S0T0	Clostridium_phage	3.0e-23	60.2
WP_148222385.1\|3435753_3436197_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	6.0e-64	71.9
WP_013239746.1\|3436494_3437688_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	6.2e-15	44.0
WP_041705171.1\|3437699_3438947_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	3.3e-168	71.7
WP_013239748.1\|3438953_3439964_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	1.3e-98	53.3
WP_013239749.1\|3439960_3440524_-	hypothetical protein	A0A0A7RW86	Clostridium_phage	2.7e-61	63.0
WP_013239750.1\|3440535_3440880_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	2.5e-17	47.2
WP_148222403.1\|3440882_3441995_-	hypothetical protein	NA	NA	NA	NA
WP_013239752.1\|3441984_3442419_-	hypothetical protein	NA	NA	NA	NA
WP_013239753.1\|3442432_3444628_-\|tail	phage tail tape measure protein	D9ZNE6	Clostridium_phage	1.0e-111	53.5
WP_013239754.1\|3444709_3445321_-	hypothetical protein	NA	NA	NA	NA
WP_041705172.1\|3445417_3445630_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	5.1e-13	47.1
WP_013239755.1\|3445577_3446033_-	hypothetical protein	A0A0A7S0S0	Clostridium_phage	4.4e-22	41.4
WP_148222404.1\|3446045_3446948_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	1.9e-56	42.9
WP_013239757.1\|3446965_3447397_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	4.3e-27	42.8
WP_013239758.1\|3447405_3447840_-	hypothetical protein	NA	NA	NA	NA
WP_013239759.1\|3447845_3448220_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	3.4e-20	47.0
WP_013239760.1\|3448216_3448492_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	7.5e-25	56.0
WP_013239761.1\|3448506_3448728_-	hypothetical protein	NA	NA	NA	NA
WP_013239762.1\|3448778_3449816_-\|capsid	major capsid protein	D9ZND6	Clostridium_phage	5.6e-129	67.4
WP_013239763.1\|3449832_3450165_-	hypothetical protein	D9ZND5	Clostridium_phage	3.0e-28	58.2
WP_041705174.1\|3450177_3450792_-	phage scaffolding protein	A0A0A7RW68	Clostridium_phage	7.1e-31	41.6
WP_013239765.1\|3450838_3451123_-	hypothetical protein	A0A0K2CZ01	Paenibacillus_phage	3.9e-08	37.9
WP_013239766.1\|3451173_3451371_-	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_013239767.1\|3451375_3452734_-	hypothetical protein	A0A0A7RU06	Clostridium_phage	1.9e-84	47.4
WP_041705176.1\|3452726_3454208_-\|portal	phage portal protein	D9ZNC8	Clostridium_phage	7.4e-159	57.1
WP_013239770.1\|3455512_3456106_-	HNH endonuclease	E5DV63	Deep-sea_thermophilic_phage	3.8e-21	48.5
WP_013239771.1\|3456211_3457036_-\|terminase	terminase small subunit	A0A0A7AR21	Bacillus_phage	6.3e-51	42.8
WP_013239772.1\|3457112_3458009_-	hypothetical protein	NA	NA	NA	NA
WP_013239773.1\|3458111_3458321_+	KTSC domain-containing protein	NA	NA	NA	NA
WP_013239774.1\|3458322_3458466_-	BC1881 family protein	NA	NA	NA	NA
WP_013239775.1\|3458456_3458657_-	hypothetical protein	A0A0A7S0Q0	Clostridium_phage	3.2e-09	56.9
WP_013239776.1\|3458758_3458941_+	type II toxin-antitoxin system HicA family toxin	A0A0A7RWW9	Clostridium_phage	4.5e-10	56.7
WP_013239777.1\|3458992_3459394_+	type II toxin-antitoxin system HicB family antitoxin	A0A0A7S1E5	Clostridium_phage	4.9e-49	69.2
WP_013239778.1\|3459574_3460369_-	hypothetical protein	NA	NA	NA	NA
WP_013239779.1\|3460398_3461577_-	SPOR domain-containing protein	A0A2H4J270	uncultured_Caudovirales_phage	1.3e-12	32.8
WP_013239780.1\|3461795_3461996_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
3462380:3462395	attL	NA	NA	NA	NA
WP_013239781.1\|3462610_3463276_-	hypothetical protein	NA	NA	NA	NA
WP_013239782.1\|3463301_3464507_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	2.2e-153	69.2
WP_013239783.1\|3464533_3465307_-	hypothetical protein	A0A0A7RTW7	Clostridium_phage	1.3e-37	39.5
WP_013239784.1\|3465402_3465939_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	2.1e-39	50.6
WP_063562579.1\|3465963_3466212_-	hypothetical protein	NA	NA	NA	NA
WP_013239785.1\|3466186_3466330_-	hypothetical protein	NA	NA	NA	NA
WP_013239786.1\|3466599_3466815_+	helix-turn-helix transcriptional regulator	A0A1V0E021	Clostridioides_phage	4.2e-15	68.7
WP_013239787.1\|3466817_3467159_+	hypothetical protein	NA	NA	NA	NA
WP_013239788.1\|3467611_3468304_-	hypothetical protein	NA	NA	NA	NA
WP_013239789.1\|3468553_3469195_-	hypothetical protein	A0A0A7RW43	Clostridium_phage	3.1e-69	62.2
WP_013239790.1\|3469187_3469604_-	DUF1064 domain-containing protein	A0A0A7RTV9	Clostridium_phage	5.3e-38	58.4
WP_013239791.1\|3469750_3470161_-	hypothetical protein	NA	NA	NA	NA
WP_013239792.1\|3470204_3471161_-	phage replisome organizer N-terminal domain-containing protein	Q7Y4K5	Streptococcus_phage	5.1e-44	38.8
WP_013239793.1\|3471173_3471902_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	1.5e-64	50.6
WP_013239794.1\|3471901_3472855_-	recombinase RecT	A0A1L2JY28	Aeribacillus_phage	1.9e-59	46.8
WP_013239795.1\|3472881_3474867_-	AAA family ATPase	A0A1L2K2K3	Aeribacillus_phage	7.0e-88	35.9
WP_013239796.1\|3474921_3475155_-	hypothetical protein	NA	NA	NA	NA
WP_148222405.1\|3475170_3475350_-	hypothetical protein	A0A0A7RTR9	Clostridium_phage	1.9e-05	46.4
WP_013239798.1\|3475368_3475581_-	hypothetical protein	NA	NA	NA	NA
WP_013239799.1\|3475573_3475972_-	hypothetical protein	NA	NA	NA	NA
WP_013239800.1\|3476021_3476303_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_013239801.1\|3476280_3476799_-	hypothetical protein	A0A2K9V3J3	Faecalibacterium_phage	3.7e-25	43.6
WP_013239802.1\|3476858_3477089_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013239804.1\|3477659_3478118_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RVV2	Clostridium_phage	1.3e-40	53.3
WP_013239805.1\|3478243_3479425_+\|integrase	site-specific integrase	A0A1C8E994	Bacillus_phage	3.8e-25	30.1
3479609:3479624	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3970843 : 3991532

Clostridium_phage(44.44%)

integrase

attL 3958731:3958774|attR 3991622:3991665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3958731:3958774	attL	NA	NA	NA	NA
WP_013240270.1\|3970843_3972805_-	C40 family peptidase	A0A0M4QX01	Salmonella_phage	1.5e-13	25.5
WP_156496159.1\|3972817_3972976_-	hypothetical protein	NA	NA	NA	NA
WP_013240271.1\|3972997_3973618_-	hypothetical protein	NA	NA	NA	NA
WP_013240272.1\|3973787_3974192_-	helix-turn-helix domain-containing protein	A0A2H4J863	uncultured_Caudovirales_phage	4.5e-26	47.7
WP_013240273.1\|3974324_3974840_-	sigma-70 region 4 domain-containing protein	I2E8Y5	Clostridium_phage	5.9e-23	38.2
WP_013240274.1\|3974843_3976175_-	DEAD/DEAH box helicase	A0A1S7FYY5	Listeria_phage	1.0e-151	62.7
WP_148222389.1\|3976134_3976230_-	helicase	A0A0A7S069	Clostridium_phage	1.4e-07	77.4
WP_013240275.1\|3976259_3976670_-	HNH endonuclease	A0A0N9ENE5	Pseudomonas_phage	9.0e-06	40.6
WP_013240276.1\|3976670_3976946_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	6.6e-21	55.6
WP_013240277.1\|3977220_3979644_-	phage-like protein	A0A0A7RTG3	Clostridium_phage	0.0e+00	78.8
WP_041705200.1\|3979687_3979906_-	hypothetical protein	NA	NA	NA	NA
WP_013240278.1\|3980048_3981395_-	SIR2 family protein	A0A1S5SA14	Streptococcus_phage	2.8e-19	26.2
WP_013240279.1\|3981610_3983563_-	hypothetical protein	A0A0A7RTL3	Clostridium_phage	2.5e-287	73.1
WP_013240280.1\|3983562_3984123_-	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	8.9e-89	86.6
WP_013240281.1\|3984155_3985307_-	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	1.1e-154	70.4
WP_013240282.1\|3985306_3985726_-	hypothetical protein	A0A0A7RTD8	Clostridium_phage	2.8e-10	39.2
WP_013240283.1\|3985754_3986030_-	hypothetical protein	NA	NA	NA	NA
WP_049781931.1\|3986029_3986233_-	hypothetical protein	A0A0A7RTK9	Clostridium_phage	2.8e-16	57.6
WP_013240285.1\|3986270_3986744_-	hypothetical protein	NA	NA	NA	NA
WP_041705202.1\|3986956_3987493_-	sigma-70 family RNA polymerase sigma factor	A0A0A0RUJ6	Bacillus_phage	2.1e-07	23.6
WP_041705203.1\|3987509_3987692_-	hypothetical protein	NA	NA	NA	NA
WP_081442090.1\|3987698_3987866_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013240288.1\|3987866_3988121_-	hypothetical protein	NA	NA	NA	NA
WP_041705205.1\|3988133_3988958_-	Rha family transcriptional regulator	R9QMZ3	Lactococcus_phage	7.5e-44	41.9
WP_013240290.1\|3988972_3989173_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013240291.1\|3989374_3990319_+	helix-turn-helix domain-containing protein	Q4ZB06	Staphylococcus_virus	4.4e-24	42.3
WP_013240292.1\|3990356_3991532_+\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	4.2e-40	32.2
3991622:3991665	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014328

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection