CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014330	Brachyspira pilosicoli 95/1000, complete sequence	2 crisprs	cas4,DinG,csa3	1	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014330_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014330_1

950336-950488

Orphan

Consensus_repeat	Method
GATATAAATGTAACAAATGAGGATGGAGAAACACCTTTAATGTATGCTTCCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014330_1

>merge|NC_014330|1|950336-950488|CRISPRCasFinder
GATATAAATGTAACAAATGAGGATGGAGAAACACCTTTAATGTATGCTTCCAAACTTCATAATATAAAAGTGGTAGAACTTCTAATACAAAAAGGTGCTGATATAAATGTAACAAATGAGGATGGAGAGACACCTTTAATGTATGCTTCCAAA

>NC_014330|1|1|950336-950488|CRISPRCasFinder
GATATAAATGTAACAAATGAGGATGGAGAAACACCTTTAATGTATGCTTCCAAA	CTTCATAATATAAAAGTGGTAGAACTTCTAATACAAAAAGGTGCT
GATATAAATGTAACAAATGAGGATGGAGAGACACCTTTAATGTATGCTTCCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014330.1\|WP_013243805.1\|951335_952370_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NC_014330.1\|WP_013243795.1\|939866_940127_+\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	unknown	unknown	gnl\|CDD\|235569
NC_014330.1\|WP_013243800.1\|942857_943787_-\|hypothetical-protein	unknown	unknown	unknown
NC_014330.1\|WP_013243813.1\|962382_964662_-\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NC_014330.1\|WP_013243808.1\|955108_955900_-\|prohibitin-family-protein	unknown	unknown	gnl\|CDD\|259799
NC_014330.1\|WP_013243793.1\|938154_938820_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NC_014330.1\|WP_013243811.1\|959749_962119_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293749
NC_014330.1\|WP_015274886.1\|940137_941367_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NC_014330.1\|WP_013243799.1\|941889_942861_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182814
NC_014330.1\|WP_013243802.1\|945629_946484_+\|DUF4261-domain-containing-protein	unknown	unknown	gnl\|CDD\|379456
NC_014330.1\|WP_013243797.1\|941367_941733_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NC_014330.1\|WP_013243807.1\|953569_955003_-\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NC_014330.1\|WP_013243794.1\|938821_939883_+\|hypothetical-protein	unknown	unknown	unknown
NC_014330.1\|WP_041747628.1\|946758_948738_+\|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|273947
NC_014330.1\|WP_041747626.1\|943808_945272_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|211988
NC_014330.1\|WP_049765976.1\|952381_953500_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_014330.1\|WP_013243815.1\|966034_966799_-\|hypothetical-protein	unknown	unknown	unknown
NC_014330.1\|WP_013243814.1\|965032_965965_-\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NC_014330.1\|WP_013243809.1\|955962_957198_-\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
NC_014330.1\|WP_041747633.1\|957354_959721_-\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749

Protein	Function_ID	Function_description	E-value
NC_014330.1\|WP_013243805.1\|951335_952370_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NC_014330.1\|WP_013243793.1\|938154_938820_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	7.38187e-92
NC_014330.1\|WP_013243799.1\|941889_942861_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	gnl\|CDD\|182814	PRK10892, PRK10892, arabinose-5-phosphate isomerase KdsD.	3.04583e-102
NC_014330.1\|WP_013243813.1\|962382_964662_-\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NC_014330.1\|WP_013243808.1\|955108_955900_-\|prohibitin-family-protein	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	6.21894e-65
NC_014330.1\|WP_013243811.1\|959749_962119_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	3.18485e-179
NC_014330.1\|WP_015274886.1\|940137_941367_+\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	2.1792e-50
NC_014330.1\|WP_049765976.1\|952381_953500_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.51772e-46
NC_014330.1\|WP_013243802.1\|945629_946484_+\|DUF4261-domain-containing-protein	gnl\|CDD\|379456	pfam14080, DUF4261, Domain of unknown function (DUF4261). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.	2.0312e-19
NC_014330.1\|WP_013243797.1\|941367_941733_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	3.12017e-40
NC_014330.1\|WP_013243807.1\|953569_955003_-\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	1.40447e-96
NC_014330.1\|WP_041747628.1\|946758_948738_+\|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	2.13172e-174
NC_014330.1\|WP_041747626.1\|943808_945272_-\|cardiolipin-synthase	gnl\|CDD\|211988	TIGR04265, bac_cardiolipin, cardiolipin synthase. This model is based on experimentally characterized bacterial cardiolipin synthases (cls) from E. coli, Staphylococcus aureus (two), and Bacillus pseudofirmus OF4. This model describes just one of several homologous but non-orthologous forms of cls. The cutoff score is set arbitrarily high to avoid false-positives. Note that there are two enzymatic activites called cardiolipin synthase. This model represents type 1, which does not rely on a CDP-linked donor, but instead does a reversible transfer of a phosphatidyl group from one phosphatidylglycerol molecule to another.	7.20307e-146
NC_014330.1\|WP_013243795.1\|939866_940127_+\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	1.12129e-18
NC_014330.1\|WP_013243814.1\|965032_965965_-\|DNA-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.20867e-55
NC_014330.1\|WP_013243809.1\|955962_957198_-\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	0
NC_014330.1\|WP_041747633.1\|957354_959721_-\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0

>NC_014330.1|WP_041747628.1|946758_948738_+|VacB/RNase-II-family-3'-5'-exoribonuclease
MKVIKLLRRIDKKGQVSIKDYKAEYVENKKDKLRFDKMLHKASSMGLIIKKGDILKLTKEGKYYLDSSSNERDERQSSKKQEFKKSSSKKTSKKENSTKTNVIEKPDIKVEINNAKKDAEIVANAYNIPTDFPKKCLEEAKILPDSMENVGLEFDRIDLRNIRTVTIDGADSKDFDDAISVEKLNDGYKIGVHIADVSFFVAEGSALDREARKRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKSSRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKLDTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMKQAIYDINNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEGAQNMKPSMQKMFDNCAKWCSRTERVAVECERSLYKVKAARFMKEKVGKEYNGIISGITKFGIFVEIEDRGIEGLIRYADLRHHYHYDENEQAAYSNEEAKWYTLGDKIRIVVHRVNIEELFIDFLPASEFDNALDDRDIIDSRDFLKKKKGSKNKKEIYSRKSKPFKNKSRKEKKKSKKKR
>NC_014330.1|WP_013243802.1|945629_946484_+|DUF4261-domain-containing-protein
MDNKKLESTEEALFSHVYFYKILFKEKPQLPNIELIKQKLRALYNNIEAISEDKNLYSIMINDLKVKFQDDKELGVQVFMYEPIEFDYNGISDEVYNQAWDIKDAKELLKECKYQVMLSDFLAGGLDYKDRTTLLNNWLNIALNIFPDAIAVYNEQSGKILLREQLLKNQYPKNLRFLYSGLNIRFFKVQNTNDMIVDTFGLYSIGLSDIQYHFHDLNPNNIIQHAMNIAAYIFENGNIIKSNDEIESIFNGVKWLCRYEKSLTKPYREVLDINTLEYASGKRN
>NC_014330.1|WP_041747626.1|943808_945272_-|cardiolipin-synthase
MFIYILTIIFFLYVILIAIKMLLENRPPYSFIAWLTVLVFLPYVGAIFYLFLGVNWKKSRKKLSARLPEDMIRKHFSSLLEEQMNIIDNMGGNYAKHTNLVKLAIKSGYSPITVQNQVYVFDEGKDLFDDLINNLKLAEKTIHMEYFIWRSDELGNKIKDILIKKSKEGVKVRLIFDGLGSMLRISRKYKRELKKNGIEFLYYHDPFSIFWTRYVNYRNHRKIVVIDGIVSYMGGMNLGQEYIDGGKRFASWRDTHMRIVGDACNLIQNVFVCDWHNAGGRDLDNLMDNGSSLMQELFPSSTTDKYLPMQIISSGPDSKWDSIQKIYSKMIADAKESIYIESPYFVPDDGFLHDLENAALSGINVNLMITGKPDKLVAWWVAQTYFETLLKAGVNIYLYESGFLHSKFCAIDGRIVSCGTCNMDIRSFYLHYEMNAVIYDIDTALKFERIFKDDVSRSHKITMEEYKKQSILIRLRNSACRIIAPVL
>NC_014330.1|WP_013243800.1|942857_943787_-|hypothetical-protein
MKNVKISSLNENDLLELKTSKERISLFIDNSGISKDMIPFLNDVLKERPDFFLNISSEKDSGSNLSGEDIIKFIPEVRNLIFYASLKNPISNLNLFSRLGNLISLHINGNIDKDVALSPLDSIETLSSFYLENGFSLKHSVYIESRKSFCDIGASNIRVEHFTKMSQLKKLSILSSATHIDEIPKRMPNLEEIYIEKGKGINTLDFLNELKNLRVIELNSISELKYIPDLSKLENLEKVILRNLRSLEDLEPIFNNKKIKILILENVRGFNIEKLSSMDSLKYITVTTDDKLETNKIKKSLLDKGYLEA
>NC_014330.1|WP_013243799.1|941889_942861_+|KpsF/GutQ-family-sugar-phosphate-isomerase
MNIIDRGKLTLLLESESLKLLSEKLDDNFEKAVNELFNIKGRVITSGVGKSGHIARKAASTFASTGTPSFFVDPNECLHGDFGMITKNDYLVLYSKGGESREIIELVNWSCRQNIPYIAITNDEFSTLSKNAKITLLTHVKEEACPLKLAPTVSTTASLALSDALATALMELRGFKAEDFAIFHPGGSLGRQLAKVKTIMHTDNLPIINLETSLYDALFKIIECKLGIAIITDDNGILKGIIVDGDLKRLLVKDKQIENILKIKVKDIMNNNPKVIYQDTLIGEALHLMEGKITNLVVVEDTKDGKKPIGIVHIHDILKIKAF
>NC_014330.1|WP_013243797.1|941367_941733_+|YraN-family-protein
MKSKKEIGNLGEDIALNYLENLGYELLERNYKSSITRGEIDLIMTKGVVIVFVEVKYRRQGSFGYAADAITERKKQKLYETAEEYLIKKGLSLSQKCSFGAVLIDDTNYSREISFVEDIFI
>NC_014330.1|WP_015274886.1|940137_941367_+|HD-domain-containing-protein
MDKITSIKVDDIKTKIDKQDIYIYNGFMAISKYIKSIDEDIKRLKKWDIEEVFIKDSDANADGYQTPEDFEKFARECIVYKNIYMGILEKVKTSLGDFRYNNIVNISNLKSIIDSILDLINKNMNAAIALLNIENLSRDDYYYIRSLNVSMISLMLGKVMKFPEDKLQKLGLGAILYDIGLIRIQDKVLNKHEQFTPEEYIEIKKHTVFGYKIIKTNFRLEEEIAVIPLEHHEHYNGKGYPRGISGNQIHLYPKIVAVAHSLEKILKPIRISKDSKRTPTYAKIVNGVKTVENKTLSDAVREIIKGANIKFDPIIAKLVVGTFSVYPVGTVVVLNDNRKGLVFATNISYPIRPIIKIVSDENDNFIEDGEVINLIETNKLLISGVDKDSNILEEVKSRLLDKKENNDGN
>NC_014330.1|WP_013243795.1|939866_940127_+|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein
MKKEIENAVALLYEREIHNAPIVISKGEKLLAKRMIEIAKKNKVPIVSDEDTVKELMHLEIGEEIPYSVYEAVSIILKYVYKLKAE
>NC_014330.1|WP_013243794.1|938821_939883_+|hypothetical-protein
MLNINNKYSNIIINSKNSQNIKDGDIVRYSLMRKLDNNKAIINIMGNKVVALFKDGMQDKGFAVINKENGKIVLKLLKDVNSIKEAREAINNNAMKDTLVLNSNKENNTEISSILLKNSIKQSPENITYLERIIKYIPQLDDKKMKFILHSMSNGIYFSIDELEMFENIFSKFNNLHSIIKNSNKNIEKTEILLTLLKEINDTDKSLKNYISSNGNLSVWLMLFDMLQDELSSDSSNMLNLLLKILSSNRRNKTFREGSFLIPIPFMVNNELKEVLLYINRKDNKAKNLEFIAYDNNKELCKIEIVKDNKYIINLFLFDKKLFLKCQNIKTNIDKELEKFDNIELEINYEKRD
>NC_014330.1|WP_013243793.1|938154_938820_+|ribonuclease-HII
MYFFDNEENEEIDKLHYEKYYLDLGYKYICGIDEVGRGSLFGEVTACAVIMPLDDDIIKEANDSKKLTAKKREELYKIIIQKALSYSVYSVAANTIDKINIYNATKLAMLKAVEGLSIKPDILLIDAMKIDTEIKQESIIKGDLKSYSIACASIVAKVSRDKAMNILSEKNKEYDKYKISKNKGYGTKEHIEAIKKYGASDLHRLSFEPIKSIKEENSFFI
>NC_014330.1|WP_013243805.1|951335_952370_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MDKESITNSNENSYDVNNSSIRPKGFNDFIGQENIKSKLKVFIDSAKKRDVSLDHILFYGPPGLGKTTLAQIIAEELGSNIKATSAPVIERPGDLASILTTLGEKDILFIDEIHRLRTVVEEVLYSAMEDFFVDIKVGEGTSAKSFRVKLPKFTLIGATTRSGLLSTPLYDRFGIVERLEFYTNEDLADIVKRSSKFLNIDITDSAAISIASRSRGTPRIVNRLLRRVFDFATVSDVLKIDEKFASESLEKLGVDKNGFEALDKQYLDTIIKNYNGGPVGVDTISVSLSEQIETIEDVIEPYLIQSGFIKRTPKGRVATIKAYSYLNINVKNNDNYKENTLFDL
>NC_014330.1|WP_049765976.1|952381_953500_+|M23-family-metallopeptidase
MIQTRDTFETKSNIKLDEYYIQETSKDKSKVANKFVNNFKSNNKKQAAKYPKYYNKKTTYKKNHNKLYHLKISISKIYDSTLPIRNFFNKIISAIMKKGNHERSILIFYNNEEKGLSLPINNFMILFFVLIFASLIYTGFDAYYKQKEARDFYNTLSATEAKTYSLITEYKDSLNRYSKSLKDYNDTIKNISYLIDYNNNSSFNNNSNNDNDINKTLNEIDRYQKNILTFMDVSSIIHKEIPVGWPVAGGGRISSGFGARLSPFTQEKSYHYGVDIAGPYGTPILAAADGKVVFAGWKNGYGWFVLIEHANGYQTGYGHNSELLVHGGQQVKRGQKIAMIGNTGRTTGIHCHFEVRIAGDHKNPMPYLNARF
>NC_014330.1|WP_013243807.1|953569_955003_-|sodium:solute-symporter-family-protein
MGQAIVIVIVIVYLIAMLFIGVYSSKKISNSNDFALAGRNLGPILLAGTLAATNIGGGTSLGLAEQAFGKWGFSAVWYVITASLAYLVLAFLAQRFRNAMVTTVSEYFYNRYGKANALVTSIIMGLPMIGITAAQIIASASILTVMTGWNYKVSVVIVTVVVTAYSSMGGLWGVAFTDLIQGSLVFIGSLVAIPFALNYAGGFEHVISNLTPAQKSLTAGMGWPTIISLTIMYIASYSVGPEISQRFFSARDSKSLMIGSLMGGLVCILYSLFPAFLGLIASSVVKDGLLTSELLTSEGSRYILPVLAIHTMPPVIVGLLFSALISATMSSADSDMLAVSVIATNDIYKKYINKDATDKQLLFLGRACMVVVGLISMFIAFRAANLITILMFSFSLRAAGVFIPYLFGNYTKKKLSAVASMGSLIAGSVVTIFFQYNKNINLFGVDPIIPGIVASLIVFLILSTLIQPKPNASNINN
>NC_014330.1|WP_013243808.1|955108_955900_-|prohibitin-family-protein
MRIININTNKLHSILFILLPIVLIVGFLIFSSVTIVSTGEVGIRSRLGKAISEEEPGLHFRIPFIDSIRTMEVREQTVEKTYAVSSKDMQTISMTLNVQYSITGDALELYKKFGTDYKNKLVNPRISESLNAVSARYTIEEFITKRNEMAGELLKEVMADFQNYGITVAACSIIEHDFSDEFDQAIERKLIASQNALTAQNDLEKVKYEAEAEITKAKGIAEANRIMQESLTPLLIQRMYIEKWDGKMPQVSGSGVTPMIQVK
>NC_014330.1|WP_013243809.1|955962_957198_-|anaerobic-sulfatase-maturase
MNRGYHLMAKPFGPICNIKCEYCFYLEKKSLFQENEKYKMSYEVLENYIKKYIETQDIPEISFVWQGGEPMLASLDFYKDVVKLQKKYSGNKKITNSLQTNGLLIDDDWCKFLKENNFLVGLSLDGNKDIHDKYRKDILGNGTFDRVFNSLKLLQDYNIDFNVLSSVSKYSSKYPLEIYNFFKENKIKYIQFSPIVERLPDEEAKKLSLTHSIPNSSSNEKVTDYSVEPESYGDFLISIFDEWVKKDVGEIFVMNFEWALTSWLGLENTICLFTKECSGCTVVEHNGDIYSCDHYVYPDYKIGNIITDNPRSIIDSDKQKTFGLKKTNLPKNCLRCDCLFACQGECPKNRFDKFYDGEEGKNYLCEGYKKYFYHIHPYMKAMRELLENNIDIREIMRIKESPIVIVKNNKL
>NC_014330.1|WP_041747633.1|957354_959721_-|arylsulfatase
MTNKFKKGFCFSTSLMVAASAVSCSTETQSEKPNIVYIVLDDMGFGDLGCYGSSISTPNIDALANNGIRYVNYFTSPLSSPSRASLLTGCEANKVGMGVVSDVDFGELAPNITGRIKKEHAPFTHTLQANGYNTYAIGKWHLGPYDEFTPDGDKYHWPSGKGFDKNYNFVASQANQNQPGGIIEGDEFIVPDTSDPNYHLSQDIVDKTLEYIDESKNEPFFAYVAFGAMHGPFNVAKKYIDKYKGKFDHGWDVEREKIFERQKELGIIPADAVFSPRNEDVPAWDSLTDKEKAVAARHMETYAGFLEHTDEQIGRLISEMKKRGVYDNTIFIIVSDNGANYNGGRNGSLMAHANENLYVHDIDTQYNLMDEFGSAVYGTEYNMGWANVSNTPLRYFKTKAHYGGVKTFCIASWANGIADKGRISKEMIAVFDISPTMLDVLGFEPLTEVNGVKQEKMQGISFKESFESSAPMTNPRKEIALMMMLDRTYADGSGYIIVTNPKTQEWELYDINNDPTQMKNLASSMPDKVKEMAAKYEESVKRDFNGAQNLLIDFAHRVDSKILIERYGQLAKDVLTSMQTGKAVSKEAEEYMRLYRFFSFVPEGIGYAGVGSVWYRPPSSKLRATNYTYKKDDGYFFSLSAAHTGAVSHNINVDIEIDDNSKGVIYANGGLDGGYALYVNDDGNLVYEYNYLGERQKVISPEALSKGNHNIMMSYKKDNVNSGVIDMIIDGNAVASSTIKMLPIMISYDYFSIGEDVGSKVSLDYKDNYAFNGKVGDVNINLGDDLLK
>NC_014330.1|WP_013243811.1|959749_962119_-|sulfatase-like-hydrolase/transferase
MRKNNNLKKGFCIGSSVLMAASAVSCSTETQSEKPNIVYIVLDDMGFGDLGCYGSSISTPNIDALAQNGIRYVNYFTSPLSSPSRASLLTGCEANKVGMGAVSQVDFGDLAPNMSGRIKPEHAPITHTLKANGYNTYAIGKWHLGPYDEFTPDGDKYHWPSGKGFDKNYNFIAGQANQFQPGGIIEGDEFIVPDTSDPNYHLSRDIVDRTLKYIDESKNKPFFAYVAFGAMHGPFNVAKKYIDKYKGKFDHGWDVEREKIFERQKELGIMPTDAVLSERNDEVPAWDSLTEKEKAVAIRHMETYAGFLEHTDEQIGYLISEMKKRGVYDNTIFIIVSDNGANYNGGRNGSIMNHANENLYVHDLDTQYSLLDEFGSALYGTEYNKGWANVSNTPLRYFKTKTHYGGVKTFCIASWANGIADKGRISKDMIAVFDVTPTMLDIIGIEPLSQVNGVKQENMHGISFKESFESSNPMTNPRKEIALLMMLDRTYADGSGYIIVTNPKTQEWELYDIENDPTQMNNLASSMPDKVKEMALKYETVRREFHDSENLLMDIVHKTSPETLTKRYGQLASDVLTSLKTGKAVSKDAEEYLRLYKFFSYTPEGAGYTGVGSVWYYPSTSKFRATNYTYKKEDGYFFSLSAARTGPVSHKINVDIELPNNAKGVIYANGGLDGGYALYINDNGNLVYEYNYLGERQKVISPEIMKEGKYNIVMDYKKDKVNSGVIDMIIDGNIVASSPVKMLPIMISYDYFSIGEDVGSKVSLDYKDDYVFNGKVDEVNIVLGDDLLK
>NC_014330.1|WP_013243813.1|962382_964662_-|arylsulfatase
MNKENIVSKSLLFTGALSSSMISVSCNNNAVADNSVVLANNNIEKPNIVYIVIDDMGFSDLGCYGSEISTPNIDKLAENGLRYNNFCVTPLSSPTRAALLSGRNSHSVGMGRLANYTLDAPHSTAQITNTAALTPRLLKDNNYNTYAVGKWHVAPLWETSSIGPYNNWPLGRGFDKFYGFMDGETDQFNPELVDGNTHVDTVYDDNYHLTEDITDRAIYYIKSHKSISKEKPFMLYYATGAAHSPHQVPEEYVKKYENVYNVGWDKIREERLKKQKELGIVPMDAELSPLNENVKPWNELDEDTKRLFIEYEKHYAAFIEHTDAQIGRLIKALEDMGELDNTVIFLIADNGPSPSGKATGTLNTVNIKNGIMSDIEKDVKRINEFSKLAPNYPQGWAQVSATPFRYYKESANYLGGIRVPLIIHYPKGIDKSQNGSIRTQFSFVTDIAKTVLDITGIKEPKTVDGIEQMPLHGYSLVPTFNDANADTKRTTQYFELYGNRGLYDNGYFLSVSHKKGDSFDNDNFALYDLNTDFSQLKDISKENESKLKEMKNLWDKEAEKYGVNPLDDRVHVELIAKQLSANIEKKNSLTLYPNTSSINVNISAIPTALNRSYDITAYLNRKSESEEGVLLAFGNHYGGYSLYIINNKLNYEYIYDDAKYHIEINEPLPLGELVIKVKYSKTGKDSGEATLLVNDKEVGKLALPKVYPMTANTTDGMSAGRDLQGNVSERYEGRGHFEYSGDLEKVTVEGHNDYNKIAM
>NC_014330.1|WP_013243814.1|965032_965965_-|DNA-binding-transcriptional-regulator
MNIFDDLSLLYKVAKYYYIEDYSQGDIGKLLNISRPQISRILKRARELEIVKIEISMPNNLKDDDTEEKIKQHLGLKDVLIVDDSNDNKLLYVKSSEYLSSIIEKNKKIGIGWNETLYNISIELKYNDSDKEKIFYPLVGNLGNNNNPYLQINNIVDRFAEKFNSRAYFNNYPAITEKKYLNNNDMEKLEEFKKFWTDLDVAVIGLSSRHESYNSYIKDIPKVDKLNIDNIEGMVLGSFFMNDGKTFKYPDKYYINCIMLSELKKIKNIVCVVTGNQKIDIIKFAAINKYFNILITDKTTADYIVSSFKI
>NC_014330.1|WP_013243815.1|966034_966799_-|hypothetical-protein
MKFVKYFLLINIFIITITYSAFASLEINFQGHYGIAFPFNSIKVNDNYKNTIYDSVDGTLGFEGTLFFQIGNYFQLFEDDYTRIIKGVSLFGDIGFSINALMSDYKENNNKYTEVLGFYSMLVGATVKLNFSKMSIGLGTGIIAPLYAMVASSKYGGVMSAPDDLDNWNVNDMRNLFKAPIMPYIKLTIEGFLYLVPNFAVTLGGYMMYNFGMQYKTDVVNNNLGGNIYNQYNFSDFSIGLILGISFGRSDGYN

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Crispr_ID: NC_014330_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014330_2

2008853-2009476

Orphan

Consensus_repeat	Method
TTTAATCAGCCTTTAAATAAATGG	CRISPRCasFinder

8 spacers

The CRISPR arrays of NC_014330_2

>merge|NC_014330|2|2008853-2009476|CRISPRCasFinder
TTTAATTCTAATTTAAATAATTGGAATGTATCAAAAGTGAAAAACATGATTTATATGTTTGCTGGTTGTACATATTTTAATCAGCCTTTAAATAAATGGGACGTTTCAAATGTGGAAAATATGTCTGGCATGTTTTTTGGTGCTAAAAAGTTTAATCAGCCTTTAAATAATTGGAATGTATCTAAAGTGAAAGATATGAGCGATATGTTTCATAACTGTGAAGCATTTAATAGACCTTTGGACAAATGGGATGTTTCTAATGTTAAAGATATGTCTAATATGTTTAATGTGGCTTTGAAATTTAATCAGAATATAAATAATTGGAATGTATCTAATGTTGAAGATTTATCAAAGACTTTTCGTTATTGTAAAGCTTTTGATCAGCCTCTTAATGATTGGGACGTATCTAATGTGAAAAATATGCAACATATATTTGAGGACTGTGAAAATTTTAATCAGCCTTTAGATAAATGGGATACTTCTAATGTTGAAAGTATGGAATTTGCATTTAGAGCATGCGGTAAATTTAATCAGCCTTTAAATAGCTGGAATATGTCTAAAGTAACAAATATAGAGCATATGTTTGCTTTTACAGAAGAATTTAATCAGCCTCTTGATAAATGG

>NC_014330|2|2|2008853-2009476|CRISPRCasFinder
TTTAATTCTAATTTAAATAATTGG	AATGTATCAAAAGTGAAAAACATGATTTATATGTTTGCTGGTTGTACATAT
TTTAATCAGCCTTTAAATAAATGG	GACGTTTCAAATGTGGAAAATATGTCTGGCATGTTTTTTGGTGCTAAAAAG
TTTAATCAGCCTTTAAATAATTGG	AATGTATCTAAAGTGAAAGATATGAGCGATATGTTTCATAACTGTGAAGCA
TTTAATAGACCTTTGGACAAATGG	GATGTTTCTAATGTTAAAGATATGTCTAATATGTTTAATGTGGCTTTGAAA
TTTAATCAGAATATAAATAATTGG	AATGTATCTAATGTTGAAGATTTATCAAAGACTTTTCGTTATTGTAAAGCT
TTTGATCAGCCTCTTAATGATTGG	GACGTATCTAATGTGAAAAATATGCAACATATATTTGAGGACTGTGAAAAT
TTTAATCAGCCTTTAGATAAATGG	GATACTTCTAATGTTGAAAGTATGGAATTTGCATTTAGAGCATGCGGTAAA
TTTAATCAGCCTTTAAATAGCTGG	AATATGTCTAAAGTAACAAATATAGAGCATATGTTTGCTTTTACAGAAGAA
TTTAATCAGCCTCTTGATAAATGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014330.1\|WP_013244765.1\|2011245_2013795_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_014330.1\|WP_013244762.1\|2004910_2007478_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NC_014330.1\|WP_013244774.1\|2024133_2024589_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NC_014330.1\|WP_013244763.1\|2007571_2008474_+\|family-8-glycosyltransferase	unknown	unknown	gnl\|CDD\|279798
NC_014330.1\|WP_013244769.1\|2016165_2017185_-\|DUF2806-domain-containing-protein	unknown	unknown	gnl\|CDD\|371326
NC_014330.1\|WP_013244756.1\|1998402_1998933_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NC_014330.1\|WP_013244768.1\|2015833_2016100_+\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NC_014330.1\|WP_013244754.1\|1994968_1995988_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_014330.1\|WP_013244759.1\|2000835_2002989_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|227061
NC_014330.1\|WP_041747820.1\|2017318_2019973_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_014330.1\|WP_013244775.1\|2024644_2026033_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240539
NC_014330.1\|WP_013244766.1\|2014084_2015428_+\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|240548
NC_014330.1\|WP_013244760.1\|2003069_2003897_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NC_014330.1\|WP_013244758.1\|1999760_2000816_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277319
NC_014330.1\|WP_014932575.1\|2022186_2024130_+\|methyl-accepting-chemotaxis-sensory-transducer	unknown	unknown	gnl\|CDD\|214599
NC_014330.1\|WP_013244761.1\|2003983_2004619_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|377320
NC_014330.1\|WP_041747822.1\|2020234_2022172_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_014330.1\|WP_013244757.1\|1998949_1999627_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|234924
NC_014330.1\|WP_013244767.1\|2015562_2015841_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NC_014330.1\|WP_013244755.1\|1996166_1997912_+\|cation-transporter	unknown	unknown	gnl\|CDD\|273349

Protein	Function_ID	Function_description	E-value
NC_014330.1\|WP_013244765.1\|2011245_2013795_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	6.4401e-54
NC_014330.1\|WP_013244762.1\|2004910_2007478_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	2.0476e-54
NC_014330.1\|WP_013244774.1\|2024133_2024589_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	3.80251e-06
NC_014330.1\|WP_013244763.1\|2007571_2008474_+\|family-8-glycosyltransferase	gnl\|CDD\|279798	pfam01501, Glyco_transf_8, Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase.	7.83711e-15
NC_014330.1\|WP_013244769.1\|2016165_2017185_-\|DUF2806-domain-containing-protein	gnl\|CDD\|371326	pfam10987, DUF2806, Protein of unknown function (DUF2806). This bacterial family of proteins has no known function.	3.04898e-36
NC_014330.1\|WP_013244756.1\|1998402_1998933_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	4.05444e-23
NC_014330.1\|WP_013244768.1\|2015833_2016100_+\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	1.05003e-33
NC_014330.1\|WP_013244754.1\|1994968_1995988_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_014330.1\|WP_013244759.1\|2000835_2002989_+\|AAA-family-ATPase	gnl\|CDD\|227061	COG4717, COG4717, Uncharacterized conserved protein [Function unknown].	1.09926e-10
NC_014330.1\|WP_041747820.1\|2017318_2019973_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_014330.1\|WP_013244775.1\|2024644_2026033_-\|MATE-family-efflux-transporter	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	5.7952e-62
NC_014330.1\|WP_013244766.1\|2014084_2015428_+\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	7.25508e-91
NC_014330.1\|WP_013244760.1\|2003069_2003897_-\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	2.90232e-13
NC_014330.1\|WP_013244758.1\|1999760_2000816_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.79252e-16
NC_014330.1\|WP_014932575.1\|2022186_2024130_+\|methyl-accepting-chemotaxis-sensory-transducer	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	6.67373e-11
NC_014330.1\|WP_013244761.1\|2003983_2004619_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|377320	pfam04347, FliO, Flagellar biosynthesis protein, FliO. FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.	1.21312e-13
NC_014330.1\|WP_041747822.1\|2020234_2022172_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.07328e-12
NC_014330.1\|WP_013244757.1\|1998949_1999627_-\|transcriptional-regulator	gnl\|CDD\|234924	PRK01229, PRK01229, N-glycosylase/DNA lyase; Provisional.	1.26642e-47
NC_014330.1\|WP_013244767.1\|2015562_2015841_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	8.94191e-12
NC_014330.1\|WP_013244755.1\|1996166_1997912_+\|cation-transporter	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	4.77898e-71

>NC_014330.1|WP_013244763.1|2007571_2008474_+|family-8-glycosyltransferase
MKKLGILLCSTANQIFAVGNVLIGLKKHFSLPEDEYDVILYIDKDMPKRNEKALKKIYKNIIINNFNKIFSNEYSQSNAIRYFTIMAHARYEAFDLLNEYDKVLYLDTDVIIQKDIIEILDMNEHDMYAAFEKIPIRMNLENKNFITISDKELKYNIEKIVFNSGVLLFNKKMIKNKNGIKEWCYNKSDEWKAADQIILNLMVQEFNVDIADFTDKYNRYVLDNLEDAIIIHSYTWNLKFWDGIYNKDWEENNKVWISFGGLKYKQKFKKKIINSIVWWIPNKSLRDKVRSYFYQKNYIR
>NC_014330.1|WP_013244762.1|2004910_2007478_+|BspA-family-leucine-rich-repeat-surface-protein
MPKYKPKTKQELEKLVYTDGIKLYDIDTSLITDMSELFYKSSRKDFEGIEDWDVSNVEDMSYMFAYMSYDSFESRSKAKFNRNLNNWNVSKVKHMSFMFYYCNDFNQPLDKWDVSNVEDMFRMFDNCKKFNQPLNNWNVSNVTNMSGMFQVAESFNQPLDKWDVSNVTTMRAMFNYAKAFNQDISNWNVIKVEDMGYMFSICVNFNQSLNDWDVSKVKTMEGMFRSAFKFNQPLDKWNTSKVENMHEMFNEALKFNQPLNSWNVSNVKTMECMFRGTESFNQPLDKWDTKKLKTMFGMFDFAKGYNCFDSLSNWDLSKVSEMSNLCFGRYEELPLRIKAYLQAFYGSYKDYLTITKENVREVYNAISKDTNKKVLSLKKRLESEFSEELSSVTNNYNFKTIEEAEKYVEDNYNKKDDKKVSFINDYKVVIKDKSREVDNKVLKYIYLEYLLLKRDVKKLVQIDNIINLLDKDSFIEFIKNVYDENNKETAAFIYGIYGGDEALYNIYKKEQDTKLSLLIIKLNSESKYALRLLYKIYTSTKKSEVRYEADKLIDEVMEKMDIDYDEFQLRYSSDLGFNAKGEKVLNKNYKLVLNSDYSLSLFDIKNNKELKKIPQNFDENLKEEIKSLRKEVADFIKNTSHILSVLVIEGKTYSYDFYKDVFVDNTMMNKFASTLIWNLYDKDYKFLTTFRYSGDGSYSNFNDEEIKIDNNSFVGLASPVEMDDETISKWRKQLEDYELSQPLEQLSLIKLDKDNLQKEIEKIQNAEISYITFKNFGSRYDMDADFLGYKVIKSYSFESDDGDSFLITADVNANTNYSDKVKINVYFENGEETSKRFIYSLLILMIHDFRLTDLF
>NC_014330.1|WP_013244761.1|2003983_2004619_-|flagellar-biosynthetic-protein-FliO
MIKKILLFTILTISLLYSQDTNNITNDTTQSNYFNIQENTINNTNNEPAILQDIRNIENRANVSTTSMFIRAIIGFIVTLVGIYIVFVYLKNKSKKVSGSNEIIKVLATTAIASNRYVSIIEIANEMYLISVSDHNINLLSKIEDKEMKDQIKMMYVNSKENTVEDSFKNILDQTLTIFKQPKMKKEDALKTTSDIREKLKSLNENNNNKE
>NC_014330.1|WP_013244760.1|2003069_2003897_-|thioredoxin-family-protein
MNKNIMMIISLIVIAFTISCNDSYAAIKWEKDLASAVKKAKDKDLPIMIDVYTDWCSWCKELDKNTYANKEVIDAAKKMVSVKLNPETSKEGADIAQKYGVQGFPTILFISHDGFVLENVGGYVEGEKFVPYMKNAQEKLKKIRIVLQSKEPSLEKLDLYMESGNEEESSKIFNALLEKKAISKEAMSKYILGFGLMRAQKNDYDTANSYFDRIIKEYPNSQEVYIAHYYKAVTMVLAGEKEEPKKYLEKLLDDPKIPEDMKVQYNTLLSYINEN
>NC_014330.1|WP_013244759.1|2000835_2002989_+|AAA-family-ATPase
MLLKLNNFGKFKNKSFEISDFITLFYGANESGKTTIFDSLMYLFSENKKNLGFSKMIKNRYGDEIDVESVPAIDDSIKLHPDSYNNLYAIRQSEIIFNMSDNKKDSKEWESEIKKKLFSSDIDIGKMISEIRAEYSGRAQSSIPYQINLMENKKNSIKEELNILYDKINNESSKKEKIKELNDKLNFNANLMREKIKEHDEIFKTFDLKKKAQLKNYKLDLLSLINNFYKKNNFLSENKILQNDYSNEIKSITNNIDELKNKESYLNGKIESLKKNIEERKSIDYNSIKIRIENAIKKIDDVVNKNKKVPKFVFILVVAFISILLSVYFKNAFWLVIILPSLPFLFIKENTNTKIIKDILDTLPELNINDDINDYNYLRDLLNKELAKIELIINSKDNEEIDKYLEELETVKKSYEEENSKLENLLNKLNAKNIEHYYSMKRDYDALYKETSELYNKLMQEAKKNSLKDINMLEADCNRIIKELETIGYDDFNEAEFRGLENQLKGLEKEIELIKENINKIEKEISYTSGELNNFDNIHNTIVNLESDLSKLDDEIININKRKKALQLLEDILSNINQKNDNVFESLSNEAKVLYNHITGKNLHDDGITMSGFDKNKIIVLDRQNEKRNIEFLSSATRDAVYIAMRLSILTKIHKQGRLILLDDPFITFDNNRILEALKFIVEYSKDYNIPIVIFTKDVFIRDVLKEFEAVNIHELS
>NC_014330.1|WP_013244758.1|1999760_2000816_+|metallophosphoesterase-family-protein
MPKLLIASDLHLSVSEREYSFNVLREIIEISKDYDALFLLGDTFDTFEDLKELKEEFINIIEENKIYLLKGNHENLKSKGISLSQLNFSSNITVLEEISAFSIDDLDIVALPYNDKYSVNNEFLELVDSLKNEKRILLAHGIVEGTLWAIEENEASASIPIDIIKKSNADLAIVGHIHKQMDTRIENIEIVYPGSSRVWRRSKAEIGIRRCLALEIKNNKIKKEYINIESAGEYRVYECNSYDIETKIESLSVNWKKNDIISINIYGIIEDENELEKTKKSIINKYSKNVRDINLKNSQLYFLENAYNERIIKEFLDVVNSYEFDINNKDNLEILELAKRLGIEKIYNALQ
>NC_014330.1|WP_013244757.1|1998949_1999627_-|transcriptional-regulator
MDKEYAKHLMGIYKDKILHDRMKRRLEYFERVYKRENDKRLFAELAFCICTPQTKARSGAAAIIDLYNHNLLFKGSEESIANILIKHVRFHNMKARNIVLARKLYFPKEKFILRERIDDAIKNDSIVSLRNELAKEVKGYGLKEASHFLRNIGFGQKIAILDRHIMRVMSKLDILPESMTPKTSLTKNNYMSCEANLVEYSKKEKIPMEYLDFVFWYDATNDIFK
>NC_014330.1|WP_013244756.1|1998402_1998933_-|RNA-2',3'-cyclic-phosphodiesterase
MRAFLALNIDENIKNKYHNLLLKKIDDNIAEVKFVNKNKMHITLVFFENINESDIEKIKSSLEKTSNVIKPFNILFEKLSYFTNKFNDINVLFVKANCKELDEYVKHLRDNINIKYDKKDFKSHLTLARVKKVHDNDKLKEIVNNISFEKSSFLANSITLYESDFVNYREIFTLTF
>NC_014330.1|WP_013244755.1|1996166_1997912_+|cation-transporter
MRKDILNDIFNNKKKSILQSLDEILRRLSNLIAIAGSIFAIFVLLMQVRQITVYNFYIYYYDKIINIITVCFIIILIDQIRIAPRKLYIIVPIIQIIGLLLLNFFSRKYYGIYANRVIWTIAGSILFFLIIVINWLRLSYSKFTLYQMIIASFIFIITLGALLLYLPLSTISGRLPFIDALFTATSAVCVTGLSVIDISKEFTFFGQIVVLILIQIGGLGIMSISAIVILFSINKGSVQDRIRTLEMFNTKNKDIIRSTVKAIFLATFLVELIGAILLFTVMDNNRIGERIFYSLFHSISAFCNAGFALYTDSLHRFSDSVIVSITVSLLIVLGGIGYPVFVSVYTAIISKIKGKRYVIDVQTIIILLTTAFLLLFGTLFIFFNEYSNALEGMPLKEKILTSIFQSVSTRTAGFETIAYNSMNSVTIGVVIFLMFIGASPSSTGGGVKTTTFFVFIASIITAITNRPFIIVKGRKIKDDAVNKSIAIFTLAIAISVFGALLIFYIDGHKAMMPVIFETVSAISTVGLSLGITAGLSVWSKIIVIALMFIGRVGYLTLFMSIGSVDSRYGLIDLPTAEVNIG
>NC_014330.1|WP_013244754.1|1994968_1995988_-|phenylalanine--tRNA-ligase-subunit-alpha
MDNLDSIRELFEQNISNAKNQLEIDEIRINFLGRKGKITELLKNMSSIESIEEKKEFGKKINELKFYCENTLTEKKKLLADKEFLESLEKNKIDITMPGRRPKSASVNLLTKVEEEIVGILTEIGFRVVEGNEIEDDFHNFEALNIPSYHPARDSHDSFFVSKEHVLRTHTSGMQIRTMMETEPPIAVVSPGKCARRDAIDSKHSPIFHQIEGLLVDKNVSFNDLKGILELFCKKMFGDKTQIRLRPDFFPFVEPGADLSATCVICGGKGCKTCGGEGWLELMGAGMIHPNVFKHVGYDANKYTGFAFGMGIERVAMIKYGITDIRMFYDNDIDFLKQW
>NC_014330.1|WP_013244765.1|2011245_2013795_+|BspA-family-leucine-rich-repeat-surface-protein
MKKYKPTTKTELKKLVFTDGIKLYDVDTSLITDMSKLFYESKRKDFEGIEDWDVSNVTNMDMMFAYMGYNMLVRYSSIDFDHDLSNWNVSKVTSMNNMFAYCSNFDQPLDNWDVSNVEDMSFMFCGAKEFNQPLNSWNTSKVKNMRGMFQECEFFNQPLDKWDTSNVEDMSNMFIRAKRFNKPLNTWNINKVKDLSSMFAYCDAFNQNLNDWDVSNVTNMDSLFRQCDKLNQPFDKWDTSNVVNMEKTFFSCTKFNQPLNSWNVSNVENMDMMFYMAQSFNQPLDKWNTQKLITAAGLFRFAYKYDCYESLENWNLDNLQEVGTFCDDEDKLHTRLKVYMQVFYPKENYITITNNNAKEIYNLILKDKNKKIVRLRKKIESDFREELSISEDNFATIEDAENYIKNNYKEDKRLKFINNTNVLIKDKSREVNIKVIKYIYSEYLSLSNIIRLKRIDDIVNLLDMETFVKQIKEFYLENKGDAACLIYGIYGGDEALKDIYELKFDSNFFLSLIKLNIKHKYALKLLYEIYTTTKKRDIKKEASKIIDEVLEKMNISYSEFKLKCMPNLGFNSKGEREFNKDYKLILNSDYSLSLFDIKNDKILKSMPKKINEDLKKEIQNLEKEIHKFMRANSYLLSIILIDGEIYSYDLFREYFIDNILMNKFASTLIWNLYDKNKKIITTFRYLGKDKYIDSENKEIKIDADSFVGLASPVEMDDKTINKWIKHLKDYKLLQPLEQLKLVKLNKNSLQKEVKKLSTIEGTYGAFKDFAKRYEMYAHDKFGETYTFQSNDDDIFSISADIDEDIEHDDIIEIKLSFGNQNYNKISSRFIYTFLVFIICSFKLNDFIID
>NC_014330.1|WP_013244766.1|2014084_2015428_+|polysaccharide-biosynthesis-C-terminal-domain-containing-protein
MYLNNKVLKENSSKKIFINYAIPSMLGMLTESSAVFIDGLFVANFISSKAFSAIGIVWPITALSFSLYVMLTLGSIAIAGKCIGENNMRRASLIFTQTLIMVFTLTTPILILIYIFRETLLPLFGAHGEIYNFSLEYINGVIVAVFFWGMAYVFSQFIRLNGSPKFASLMFIISSLFNIILDALFIVVLKLGISGAAWATAFSYIISFIIGISYFFNTKCKIKIIKVYGGWSNIFKAILNGFSEFLSNISSGIIPWLFNITAYKILGNNGILIYSAANYIITFFIMIASDIGEILSSLISVSYGAKNKNKMKDFLRMGIIFVSSISILASIVLLINPNILVNVLLKNIDSKTNEDAIFFVRASIPIFICVGINIIMSAYYTSIQKAGASALIAALRTLILPVLLVLTLPNILGFLGLVLVLPISEIITLIVSIALYKNRSIDVLIRA
>NC_014330.1|WP_013244767.1|2015562_2015841_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MSEITIKIDDKLKNEADKLFNDLGLDFNTAINIFLRTSINTQSIPFKIEKTKQLDINNEEDNFYNEENIKFLKEGYLELKSGLGHKRELLNE
>NC_014330.1|WP_013244768.1|2015833_2016100_+|Txe/YoeB-family-addiction-module-toxin
MNKIFYDKAWEDYLYFQKNDKKILQKINDLIKDIERNGLLIGTGKPERLKGELNGLYSRRINHEHRLVYYIEDNNLFIVGCKTHYKNN
>NC_014330.1|WP_013244769.1|2016165_2017185_-|DUF2806-domain-containing-protein
MEIKDLAGLSEPLKKLVETISNAIGKLYEPTHIKRIAKAKSFKRDSELKDKLKEINEISNVVEKKEIVNINYYTDNVSLDNKPILERTYNRLLYQEIERTNNIDNIVIKVIEKLKDEEKVSDDPVNKDWSKKFFNIAENISDDYMQELWSRVLAGEIKQPNSFSLRTLETLKNISKEEAELFVKISKFLFYSINNEYFLFKNMTLLEKYNIKFLDILKLMDAGLFVSIERLFINLSENNTTILNNGYYFQIKLINGINIFDIKNNINSSQIPIYKVSEAGKEILKLVDEKCSNNDFFIDNIKYIKKNYWNVELILREVERIDFENGLIHTKNNNLINSI
>NC_014330.1|WP_041747820.1|2017318_2019973_-|valine--tRNA-ligase
MKHTLEGPYTPKNIEDKLYNFWKTSGFFHAVMDKNKEPYSIVIPPPNVTGVLHMGHGLNNTLQDILIRFHRMLGKCTLWMPGTDHAGIATQNVVERRLKAEGKNKHDLGREAFVKKTWEVANEHHSIIVKQLEKIGCSCDWERERFTLDEGLSNAVREVFVELYNQGLIYRGKYLINYCPSCGTALANDEVEHEEVAGALYHVKYQIEGKDEYIEIATTRPETILADVAIAVHPDDERYAHLTEQDVLILPIVGRKLRLVKDTYVDKEFGTGALKITPAHDPNDFAIAQRHNLEIINILNADGTFNENTPANYQGKNVKEARDLIIKELEEIGAFVGKDNIKHQVGHCYRCHNVVEPYYSDQWFVKMKPLAEKAYKAVNDGNTKIYPERWINTYNHWMTDIRDWCISRQLWWGHRIPVWYCDDCGEMMVSKTDVTECSKCKSKNIHQDEDVLDTWFSSWLWPFSTFGWPEVNEELKYFYPTTALVTGYDILFFWVARMIMAGTHFMNDVPFKDVYLNGLIRDKIGRKMSKSLGNGIDPIEIIDEHGADAFRFTLSFITSLGGQDIWLDRELFKMGGKFANKIYNSAKYIFGNIEDNANIKDLDTYTLENKDKWILSRLQKAIESTTQKLKEYRFDEASQTIYKFYWNEFCDWYIEISKFDLKDESKKEKTIAVLLYVLEESMAMIHPFMPFITEEIYSNLPKHNIDSKALMIREYPKSNAKYIFEDIEKDFNLIQDIVSGIRNSRSSFNLPPNKKLDVIIRYTSDYFKNTAESYKDIISALSLTESLNIISSKDSERNKGSFVKVFEGGEINVNLVGIIDLEAEKKRLEKEAAGYKKDLEAVNKKLSNENFMSKAKQEAIDTENRKKKEFEDKLKGIEEVLASL
>NC_014330.1|WP_041747822.1|2020234_2022172_+|methyl-accepting-chemotaxis-protein
MNYFFHSVIIELGVSTIAAVIAFVAIIVHFYIFFKLYEETQLIALFLSILCFIFTLSETINIIVSLSIQNVKLSLLMYKIEQIAISLTILPWIRYTKNTLKLNDKLHSFLDKAESVAIFLFMVILVIALIYSQLFVSTTEVTATLNSSAVNSVKVRGAIGPIYIFRDFIFSVYSVIIICMFLYEIFVNKIYKVNIGTLVLISMISLAFFDDFNGISTYSKYSSNYLLLPSFSFSRFSLVYMVFNIFSVYGYIVNFIDAVYKRSDTKYYDLESIKAQDAVIINTAMNTSSKLLELREHFNSLVGTLVDKVKNTNLSVNNLKTDISKIIDNTNEFITIENFQVNDGNTNIEKIEQLIETYPNLQVSSEMQKNMLEEYINILQESVKEVYILQSESVNILKSFEEFQLNIEKERNDIIKILDKTLVFNQLSFQINKILSFMTNMQDKVKTLSINSSIQASKSGEWYHNFNVVSKEVSELVVETGNITQKMQKLLFQIEEIFKNYNYASNSIKAGTMELMRETSSYHNRLTKFNNSMERQNDYNINIIKSTDKMYNSISDMSTIIVNEENDFMNIKTKIEEFNDYISDISQNANNQNIEIKNIMKDMNKLLATSEDFEDITNKLDEETKKLLEYSDNLKKVINEYSKVI
>NC_014330.1|WP_014932575.1|2022186_2024130_+|methyl-accepting-chemotaxis-sensory-transducer
MNILTNFIPGYNVSIIELLVPIIGTSMVFIFIMLYTILIVKTRQRTYIMVALALLLLLLYNIISFIIIFLGMSGNDVVLASNLYIINHIIFLLIIALLPINNRVFLKNEKIVGNISNLIIFITILIIASLVVVSIINKNTFFSTTLKSFPDNAFTVLGNGTFFVYLTYLSLIIYAMAFVPMVIDIFLGYSIVGNSIIILSNLLSFVLVITNIEFFNIRKDIYFDKLDLAVILSYLISSVAIFSSFTRNALESIRKDTILNNRLKSNLNIVTEINNISEKLNNIDRNFMDSSMFVLEVDKENKDALNIIENKINTVIDSKNKLGDTKESKKHLIRDGIKFTNTIFTFFDKYKNQMQEHFRALSQTMSNMNVSNLSYEQISSLNEDLKEIKKNIEESSNNTIADIKQHFENFKDVNKVTEDIYDTIEYIKNMTNKTNLLSINAGIQASKAGVLGKSFSVVSKEIGVLSFEISKGTASIESMLTDIFGGLVLIENSSFYIDEHCKNIENETKKIVENIDAYIKNIEERISKISTEFENFKLLEKYNNVMYNIVEEQSDIVSSVRENIVAMLDIQNSLNLKIDSQGADIIKILGSFSRIIEVKDELNDVIKKIGNYSSASHTYIETLSNIISTHRNKSSMAFKPIITLLKK
>NC_014330.1|WP_013244774.1|2024133_2024589_+|CvpA-family-protein
MFNNIDIVVIIFLVFIFIYGFYRGIISITIPVIAIISTFIIAPIIYNHASKYFDHSIILKIVSFLISYSVIRIILSKAADSIKKVLKMIFLSWVDRILGAIVMLFIVSLIISLVSYFVLNMTEYGSIIYSSKVLMFIYNIFNTNNYMNNFV
>NC_014330.1|WP_013244775.1|2024644_2026033_-|MATE-family-efflux-transporter
MNNNHLIKNKLFGNLDFYKLCISIAVPVMLQQLIMGMVSLIDNFMVAELGDIKMAAVNVSNQLNFIYLVILNTCYGAGGIYMAQNAGADNKEGMQQAFRFKVILPFTISAIYMILMLINPEIFMRLMTNGNNSQEAILASSTKYMSIIAFTFIPISISGAIGTSYREIGKPHIPLIISVIATFCNTFGNYILIYGNFGAPRLEETGAAIATLIARIIEMILFIVYIKLHKEKFYVRTREILKVKLNVFYSMLKKSSLIFLSEISWGLSEMFMTALYNSRGGAETVAGMASGFTIANIFYLVFQGIFVSTMVVVGGTLGRGELEDAKNKARWILNGSVIAGAVVGLVQMSSTLLIPFIFSKLTPDAQGITRSLVILIASYMPVWTYINAQFAVSRAGGDTVFGFAVDVPVSLLMFAPLALILAKFTTVGPVAMFGIAKLTDFAKITIGVIMLKKERWVRKLTE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014330_1	1.1\|950390\|45\|NC_014330\|CRISPRCasFinder	950390-950434	45	NC_014330.1	814973-815017	1	0.978

1. spacer 1.1|950390|45|NC_014330|CRISPRCasFinder matches to position: 814973-815017, mismatch: 1, identity: 0.978

cttcataatataaaagtggtagaacttctaatacaaaaaggtgct	CRISPR spacer
cttcataatataaaagtgatagaacttctaatacaaaaaggtgct	Protospacer
******************.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1574388 : 1637339

Pseudomonas_phage(20.0%)

tail,protease,portal,integrase,capsid,tRNA,terminase,head

attL 1574317:1574334|attR 1637930:1637947

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1574317:1574334	attL	NA	NA	NA	NA
WP_013244377.1\|1574388_1575750_+\|terminase	terminase	A0A0U1SZM0	Pseudomonas_phage	6.2e-27	33.6
1574317:1574334	attL	NA	NA	NA	NA
WP_013244378.1\|1575969_1577079_+	hypothetical protein	NA	NA	NA	NA
WP_013244379.1\|1577129_1578539_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_013244380.1\|1578823_1580785_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013244381.1\|1580979_1582743_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_013244382.1\|1583056_1584220_+	DUF819 family protein	NA	NA	NA	NA
WP_013244383.1\|1584280_1584838_+	class IV adenylate cyclase	NA	NA	NA	NA
WP_013244384.1\|1585074_1586169_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_013244385.1\|1586785_1587937_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	5.0e-46	33.2
WP_013244386.1\|1587956_1588343_+	VOC family protein	NA	NA	NA	NA
WP_013244387.1\|1588428_1589805_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_041747748.1\|1590794_1591958_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013244389.1\|1592127_1592571_+	hypothetical protein	NA	NA	NA	NA
1592151:1592168	attR	NA	NA	NA	NA
WP_013244390.1\|1593197_1593422_-	hypothetical protein	NA	NA	NA	NA
1592151:1592168	attR	NA	NA	NA	NA
WP_015274184.1\|1593447_1593657_-	hypothetical protein	NA	NA	NA	NA
WP_013244391.1\|1593668_1595477_-	hypothetical protein	NA	NA	NA	NA
WP_041747919.1\|1595514_1596051_-	hypothetical protein	NA	NA	NA	NA
WP_013244393.1\|1596075_1596501_-	hypothetical protein	NA	NA	NA	NA
WP_013244395.1\|1597105_1597447_-	hypothetical protein	NA	NA	NA	NA
WP_041747750.1\|1597500_1597896_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_041747753.1\|1597892_1598090_-	hypothetical protein	NA	NA	NA	NA
WP_013244398.1\|1598107_1600027_-	hypothetical protein	NA	NA	NA	NA
WP_013244399.1\|1600036_1601122_-	hypothetical protein	NA	NA	NA	NA
WP_013244400.1\|1601121_1601574_-	hypothetical protein	NA	NA	NA	NA
WP_013244401.1\|1601575_1602394_-	hypothetical protein	NA	NA	NA	NA
WP_013244402.1\|1602390_1605864_-\|tail	phage tail tape measure protein	A0A1L6BY19	Clostridium_phage	3.0e-62	39.0
WP_041747756.1\|1605888_1606074_-	hypothetical protein	NA	NA	NA	NA
WP_013244404.1\|1606136_1606481_-	hypothetical protein	NA	NA	NA	NA
WP_013244405.1\|1606505_1607594_-	hypothetical protein	NA	NA	NA	NA
WP_013244406.1\|1607605_1607974_-	hypothetical protein	NA	NA	NA	NA
WP_013244407.1\|1607970_1608441_-	hypothetical protein	NA	NA	NA	NA
WP_013244408.1\|1608442_1608784_-\|head	phage head closure protein	NA	NA	NA	NA
WP_013244409.1\|1608780_1609146_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_013244410.1\|1609172_1610474_-\|capsid	phage major capsid protein	A0A142K632	Streptomyces_phage	4.3e-54	35.4
WP_013244411.1\|1610483_1611107_-\|head,protease	HK97 family phage prohead protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	3.7e-27	42.2
WP_013244412.1\|1611090_1612389_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.5e-75	39.0
WP_041747760.1\|1612459_1613371_-	site-specific DNA-methyltransferase	D6PSV9	Lactobacillus_phage	5.7e-53	42.3
WP_013244414.1\|1613468_1613897_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_013244415.1\|1613902_1615675_+\|terminase	terminase large subunit	A6M948	Geobacillus_virus	1.5e-81	33.7
WP_013244416.1\|1615731_1616094_-	hypothetical protein	NA	NA	NA	NA
WP_013244417.1\|1616256_1616466_-	hypothetical protein	NA	NA	NA	NA
WP_013244418.1\|1616575_1616782_-	hypothetical protein	NA	NA	NA	NA
WP_041747762.1\|1616946_1617216_+	hypothetical protein	NA	NA	NA	NA
WP_041747920.1\|1617449_1620752_-	hypothetical protein	NA	NA	NA	NA
WP_013244421.1\|1621345_1621537_-	hypothetical protein	NA	NA	NA	NA
WP_013244422.1\|1621751_1623317_+	hypothetical protein	NA	NA	NA	NA
WP_013244423.1\|1623397_1624330_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013244424.1\|1624452_1624620_-	hypothetical protein	NA	NA	NA	NA
WP_013244425.1\|1624662_1625148_-	hypothetical protein	NA	NA	NA	NA
WP_013244426.1\|1625140_1625353_-	hypothetical protein	NA	NA	NA	NA
WP_013244427.1\|1625426_1625867_-	hypothetical protein	NA	NA	NA	NA
WP_013244429.1\|1626027_1626273_-	hypothetical protein	NA	NA	NA	NA
WP_013244430.1\|1626284_1626554_-	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	6.7e-10	51.4
WP_013244431.1\|1626611_1626890_-	hypothetical protein	NA	NA	NA	NA
WP_041747764.1\|1626892_1627219_-	hypothetical protein	NA	NA	NA	NA
WP_041747766.1\|1627275_1628136_-	ATP-binding protein	NA	NA	NA	NA
WP_013244434.1\|1628101_1629052_-	hypothetical protein	NA	NA	NA	NA
WP_013244435.1\|1629041_1629410_-	hypothetical protein	NA	NA	NA	NA
WP_013244436.1\|1630335_1630926_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_013244437.1\|1630956_1631979_-	diguanylate cyclase	NA	NA	NA	NA
WP_013244438.1\|1632182_1632776_+	OmpA family protein	NA	NA	NA	NA
WP_013244439.1\|1632772_1634329_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_041747769.1\|1634337_1635909_-	hypothetical protein	NA	NA	NA	NA
WP_013244441.1\|1636130_1637339_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.4e-112	52.1
1637930:1637947	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014330

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection