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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_021025 Mycoplasma mycoides subsp. mycoides SC str. Gladysdale, complete sequence 2 crisprs NA 0 2 9 0

Results visualization

1. NC_021025
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021025_1 996482-996618 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021025_2 1011648-1011784 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 KX550065 Streptococcus phage SpGS-1, complete genome 1780-1813 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 KT337348 Streptococcus phage phiARI0378, partial genome 35768-35801 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 KY065487 Streptococcus phage IPP48, complete genome 1573-1606 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 AJ400629 Streptococcus pneumoniae bacteriophage MM1 attachment site attP 78-111 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 KT337358 Streptococcus phage phiARI0468-4, complete genome 35716-35749 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 KT337347 Streptococcus phage phiARI0285-3, partial genome 37766-37799 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 KY065491 Streptococcus phage IPP53, complete genome 1572-1605 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 DQ113772 Streptococcus pneumoniae bacteriophage MM1 1998, complete genome 1660-1693 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 AJ302074 Streptococcus pneumoniae bacteriophage MM1 complete genome 1660-1693 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 NC_022791 Streptococcus phage phiBHN167 complete genome 30134-30167 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 KX550065 Streptococcus phage SpGS-1, complete genome 1780-1813 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 KT337348 Streptococcus phage phiARI0378, partial genome 35768-35801 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 KY065487 Streptococcus phage IPP48, complete genome 1573-1606 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 AJ400629 Streptococcus pneumoniae bacteriophage MM1 attachment site attP 78-111 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 KT337358 Streptococcus phage phiARI0468-4, complete genome 35716-35749 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 KT337347 Streptococcus phage phiARI0285-3, partial genome 37766-37799 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 KY065491 Streptococcus phage IPP53, complete genome 1572-1605 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 DQ113772 Streptococcus pneumoniae bacteriophage MM1 1998, complete genome 1660-1693 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 AJ302074 Streptococcus pneumoniae bacteriophage MM1 complete genome 1660-1693 7 0.794
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 NC_022791 Streptococcus phage phiBHN167 complete genome 30134-30167 7 0.794
NC_021025_1 1.1|996505|34|NC_021025|PILER-CR 996505-996538 34 NZ_CP009064 Borreliella afzelii K78 plasmid lp28-3, complete sequence 3129-3162 10 0.706
NC_021025_2 2.1|1011671|34|NC_021025|PILER-CR 1011671-1011704 34 NZ_CP009064 Borreliella afzelii K78 plasmid lp28-3, complete sequence 3129-3162 10 0.706

1. spacer 1.1|996505|34|NC_021025|PILER-CR matches to KX550065 (Streptococcus phage SpGS-1, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

2. spacer 1.1|996505|34|NC_021025|PILER-CR matches to KT337348 (Streptococcus phage phiARI0378, partial genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

3. spacer 1.1|996505|34|NC_021025|PILER-CR matches to KY065487 (Streptococcus phage IPP48, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

4. spacer 1.1|996505|34|NC_021025|PILER-CR matches to AJ400629 (Streptococcus pneumoniae bacteriophage MM1 attachment site attP) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

5. spacer 1.1|996505|34|NC_021025|PILER-CR matches to KT337358 (Streptococcus phage phiARI0468-4, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

6. spacer 1.1|996505|34|NC_021025|PILER-CR matches to KT337347 (Streptococcus phage phiARI0285-3, partial genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

7. spacer 1.1|996505|34|NC_021025|PILER-CR matches to KY065491 (Streptococcus phage IPP53, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

8. spacer 1.1|996505|34|NC_021025|PILER-CR matches to DQ113772 (Streptococcus pneumoniae bacteriophage MM1 1998, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

9. spacer 1.1|996505|34|NC_021025|PILER-CR matches to AJ302074 (Streptococcus pneumoniae bacteriophage MM1 complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

10. spacer 1.1|996505|34|NC_021025|PILER-CR matches to NC_022791 (Streptococcus phage phiBHN167 complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

11. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to KX550065 (Streptococcus phage SpGS-1, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

12. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to KT337348 (Streptococcus phage phiARI0378, partial genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

13. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to KY065487 (Streptococcus phage IPP48, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

14. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to AJ400629 (Streptococcus pneumoniae bacteriophage MM1 attachment site attP) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

15. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to KT337358 (Streptococcus phage phiARI0468-4, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

16. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to KT337347 (Streptococcus phage phiARI0285-3, partial genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

17. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to KY065491 (Streptococcus phage IPP53, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

18. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to DQ113772 (Streptococcus pneumoniae bacteriophage MM1 1998, complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

19. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to AJ302074 (Streptococcus pneumoniae bacteriophage MM1 complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

20. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to NC_022791 (Streptococcus phage phiBHN167 complete genome) position: , mismatch: 7, identity: 0.794

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
caacaaaaataacaattatgataatagcaattat	Protospacer
.****************** ***** .  *.***

21. spacer 1.1|996505|34|NC_021025|PILER-CR matches to NZ_CP009064 (Borreliella afzelii K78 plasmid lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
aaacaagactaacaattatcataatataaaaaac	Protospacer
 *****.* ****************  . *  *.

22. spacer 2.1|1011671|34|NC_021025|PILER-CR matches to NZ_CP009064 (Borreliella afzelii K78 plasmid lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

taacaaaaataacaattatcataatcagtactat	CRISPR spacer
aaacaagactaacaattatcataatataaaaaac	Protospacer
 *****.* ****************  . *  *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 16997 : 81546 47 Bacillus_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_2 88745 : 173278 59 Bacillus_phage(23.08%) transposase,tRNA NA
DBSCAN-SWA_3 204882 : 284511 58 Bacillus_phage(18.75%) transposase,tRNA NA
DBSCAN-SWA_4 355873 : 444392 58 Tupanvirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_5 622326 : 699526 57 Bodo_saltans_virus(20.0%) protease,transposase,tRNA NA
DBSCAN-SWA_6 710302 : 801769 50 Bacillus_phage(57.14%) transposase,tRNA NA
DBSCAN-SWA_7 867250 : 925115 38 Planktothrix_phage(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_8 928732 : 1014417 59 Lactococcus_phage(16.67%) transposase NA
DBSCAN-SWA_9 1051503 : 1135417 53 Bacillus_virus(18.18%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage