CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014375	Brevundimonas subvibrioides ATCC 15264, complete sequence	1 crisprs	DEDDh,csa3,WYL,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014375_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014375_1

2755945-2756059

Orphan

Consensus_repeat	Method
TCGGCGGAGGCGGCGATGTAGTCGCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014375_1

>merge|NC_014375|1|2755945-2756059|CRISPRCasFinder
TCGGCGGAGGCGGCGATGTAGTCGCCTCGGAAGTTCGTGTCAACCAGTTCCTCGAAGGAACTTTCGACGTCGTCACCGGCCCGGGGGTCGGCGGAGGCGGCGATTTAGTCGCCTC

>NC_014375|1|1|2755945-2756059|CRISPRCasFinder
TCGGCGGAGGCGGCGATGTAGTCGCCTC	GGAAGTTCGTGTCAACCAGTTCCTCGAAGGAACTTTCGACGTCGTCACCGGCCCGGGGG
TCGGCGGAGGCGGCGATTTAGTCGCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014375.1\|WP_013270159.1\|2765331_2765859_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_014375.1\|WP_050762512.1\|2757010_2757637_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NC_014375.1\|WP_156796168.1\|2760707_2763602_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_014375.1\|WP_013270145.1\|2745248_2746268_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NC_014375.1\|WP_013270153.1\|2757962_2758397_+\|holdfast-anchoring-protein-HfaA	unknown	unknown	unknown
NC_014375.1\|WP_013270146.1\|2746264_2746711_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368044
NC_014375.1\|WP_041762655.1\|2763738_2764419_-\|hypothetical-protein	unknown	unknown	unknown
NC_014375.1\|WP_013270154.1\|2758396_2759407_+\|holdfast-anchoring-protein-HfaB	unknown	unknown	gnl\|CDD\|224379
NC_014375.1\|WP_013270147.1\|2746744_2747797_-\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NC_014375.1\|WP_013270143.1\|2743876_2744203_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
NC_014375.1\|WP_013270144.1\|2744338_2745157_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NC_014375.1\|WP_013270160.1\|2766162_2766939_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|376820
NC_014375.1\|WP_013270148.1\|2747793_2748114_-\|barstar-family-protein	unknown	unknown	gnl\|CDD\|376530
NC_014375.1\|WP_013270150.1\|2749347_2750265_-\|DUF4232-domain-containing-protein	unknown	unknown	gnl\|CDD\|379419
NC_014375.1\|WP_013270158.1\|2764807_2765335_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|284676
NC_014375.1\|WP_050762513.1\|2759333_2760590_+\|holdfast-anchor-protein-HfaD	unknown	unknown	unknown
NC_014375.1\|WP_013270142.1\|2743086_2743815_-\|GMP-synthase	unknown	unknown	gnl\|CDD\|168162
NC_014375.1\|WP_050762577.1\|2742561_2742885_-\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NC_014375.1\|WP_013270151.1\|2756486_2756915_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341391
NC_014375.1\|WP_013270149.1\|2748114_2749308_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893

Protein	Function_ID	Function_description	E-value
NC_014375.1\|WP_013270159.1\|2765331_2765859_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	4.91516e-81
NC_014375.1\|WP_050762512.1\|2757010_2757637_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	7.5261e-20
NC_014375.1\|WP_156796168.1\|2760707_2763602_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.1701e-52
NC_014375.1\|WP_013270145.1\|2745248_2746268_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	4.49359e-105
NC_014375.1\|WP_013270160.1\|2766162_2766939_+\|PhoH-family-protein	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	1.01583e-104
NC_014375.1\|WP_013270146.1\|2746264_2746711_-\|hypothetical-protein	gnl\|CDD\|368044	pfam04664, OGFr_N, Opioid growth factor receptor (OGFr) conserved region. Opioid peptides act as growth factors in neural and non-neural cells and tissues, in addition to serving in neurotransmission/neuromodulation in the nervous system. The Opioid growth factor receptor is an integral membrane protein associated with the nucleus. The conserved region is situated at the N-terminus of the member proteins with a series of imperfect repeats lying immediately to its C-terminus.	8.58654e-11
NC_014375.1\|WP_013270154.1\|2758396_2759407_+\|holdfast-anchoring-protein-HfaB	gnl\|CDD\|224379	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane].	4.42918e-34
NC_014375.1\|WP_013270147.1\|2746744_2747797_-\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
NC_014375.1\|WP_013270143.1\|2743876_2744203_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	3.63808e-11
NC_014375.1\|WP_013270144.1\|2744338_2745157_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	3.38545e-83
NC_014375.1\|WP_013270148.1\|2747793_2748114_-\|barstar-family-protein	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	2.50016e-17
NC_014375.1\|WP_013270150.1\|2749347_2750265_-\|DUF4232-domain-containing-protein	gnl\|CDD\|379419	pfam14016, DUF4232, Protein of unknown function (DUF4232). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.	5.31455e-15
NC_014375.1\|WP_013270158.1\|2764807_2765335_+\|PAS-domain-containing-protein	gnl\|CDD\|284676	pfam07310, PAS_5, PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.	1.49746e-22
NC_014375.1\|WP_013270142.1\|2743086_2743815_-\|GMP-synthase	gnl\|CDD\|168162	PRK05665, PRK05665, amidotransferase; Provisional.	3.80503e-51
NC_014375.1\|WP_050762577.1\|2742561_2742885_-\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	3.55768e-33
NC_014375.1\|WP_013270151.1\|2756486_2756915_-\|CBS-domain-containing-protein	gnl\|CDD\|341391	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.0557e-47
NC_014375.1\|WP_013270149.1\|2748114_2749308_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0

>NC_014375.1|WP_013270150.1|2749347_2750265_-|DUF4232-domain-containing-protein
MSAHRYVAFGLMGAMSLSSCNRPDEPVEPATPVTAAPAPAGPTAPAIGYACESGQTVSLQYPDTATAQLTYKGQLYPLRLVPSGSGARYAGSGVEWWIATRDGQESATLSRLGPNDDVGVAVLERCSRPSANPALPVPGPSPLPQPAPGGVLPAATPCQASNLRLGAAGGDAGAGNRVGIVSVLNTGPAACGLAGYPALSLLGAQGRPITTLRVDQNPNTATPVSIPPNGRAYFDVAWTVVPDEGAGQTVCPSVAQIAVRIAGSPTPLTMAMAFQPCGARIRVNPYRASADPADAPAPIPASATT
>NC_014375.1|WP_013270149.1|2748114_2749308_-|glycine-C-acetyltransferase
MQTATFHDRIAAELSDIDAQGLTKPERVIQSRQGPVIEVGGRQVLNFCANNYLGLGGDDRVVAAANAATDRRGAGTASVRFICGTLDIHKELERAIADYLGFEDSILFAAAFDANGGLFEPLFGAEDAIVSDSLNHASIIDGVRLCKAKRYRFATSDMADLEAQLKAARADGARDIVIATDGAFSMDGYIAKLDEIRVLADRYGALIMVDDCHATGFLGPQGKGSYAHHGVKVDFVTGTFGKALGGAMGGFICATSEVVQLLKQRARPYLFSNALAPSICGASLEAIRIAQGPEGDTLRTQLTANAARFRSAMTEAGFDLLPGQHPIVPVMLGDARLAQTMAARMLELGVYVIGFSFPVVPRGAARIRTQMSAAHTFDHIDQAVAAFTTAGRELGVI
>NC_014375.1|WP_013270148.1|2747793_2748114_-|barstar-family-protein
MSETTHRVRIDGRSILTRADFYAAVESVEGTPDWMGRNLDALFDVLVALWPKPTVLEWTHAAFSARAIGPDFEIITGVLRDAQTEPCSRFTLRVFDGEADLQEQTQ
>NC_014375.1|WP_013270147.1|2746744_2747797_-|L-threonine-3-dehydrogenase
MTDTMKALAKTGPGIGLELIDAPIPVAGPEDVLIRVHRTAVCGTDIHIWNWDEWSQKNVPTPMITGHEFSGEIVAIGSDVNRPLKIGQRVSAEGHVIDLNSEAARAGHFHLDPHTRGIGVNRQGAFAEFVVAPAFNVIELPDDVSYEVASMLDPFGNAVHTAQQFDLLGEDVLVTGAGPIGMMAAAVARHAGARTVVLTDINDFRLELAQKVAPGVRTVNTMNEDLRDVMKELGLKVGFDVALEMSGSPIAFKQCVDTLIMGGGMALLGIPSKPMETDWGAIILKALTIKGVYGREMFTTWRKMLGLLKAGLDLEPLITHRLAYDQYREGFDAMKSGQSGKVILDWDKAA
>NC_014375.1|WP_013270146.1|2746264_2746711_-|hypothetical-protein
MSAIVDFLKGAGTDGAGRTVFEVVAMDDRTIERSHDFIQWLFPLDAPSGANRNAPVLGPGDVAAIHDCGMAQIALAAATDRMSVFYQRNTHWLVVHDHNHLRITRIIKSLRLLRGPGEAEDFHSLILRLDEAAGRPVSVGSRRYWAEA
>NC_014375.1|WP_013270145.1|2745248_2746268_+|DNA-topoisomerase-IB
MPDGSHTFTAAVEVPRGLTYCSDAHPGLARLRSGKGFSIRDADGKVIRDKAVLDRIRMLAIPPAWTDVWICPRASGHIQATGRDVKGRKQYRYHNDWSTHRSGNKFDKMSAFAKALPRLRDQVEADLGKRGATREKVLATAVRLLEITLIRVGNAQYARQNRSYGLTTLHKRHLEVDGAGLSFAFRGKSGVDHKVSVKDRRLATVVRSLRDLPGQQLFKYRDAEGDLVAITSDDVNAYIREAMGDEFSAKDFRTWAGTVSAARALRDMEPPTSPTDAKRKITQCCKAVSGLLGNTPTVCRGSYIHPEVFELFETGRIADVLPGPDTKSFEPALIKLLKA
>NC_014375.1|WP_013270144.1|2744338_2745157_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHSFHAGNFADLVKHALMLWLLRTRQAAGPVVVLDTHAGAGLYDLTGDATRSREAEAGVERLMATAERPPLIEALASEVATLNPGGGVRFYPGSPVLVARRLGADDAYVGFELREEVAGLLRESLTGFARVRGEIGDGYDLVRAEARRTKAPLVLIDPPFERPDDYLRAADTAAAIVTADPGAIVAIWTPLKDLETFDGFLRRLAAGTKAPTLVAEARLRPLTNPMKMNGCAMVVVNPPAGADAAAAEICGWVARTLGDAGAKGEVWRV
>NC_014375.1|WP_013270143.1|2743876_2744203_+|antibiotic-biosynthesis-monooxygenase
MTDTDATIDPDPVPVVLINVFKVQPDRQDALIDLLTAMTRAQVGLPGFVSATLHRGLNGKTVANHAVWRSVADWKAMTRNPAVAAAMSPIMAIATFEPNLYEAGEVIE
>NC_014375.1|WP_013270142.1|2743086_2743815_-|GMP-synthase
MKPIAILETGKPPEALADAFDDYPARFRALLGEGVATVRFDVQAGRLPADPEAFQGAIVTGSAAGVYDDLPWIPPLMDWLRGARGRTRLVGICFGHQAMAHAFGGRVQKSDKGWGIGLHRYAVTAHEPWMFPKAASIAIPVSHQDQVLTPPADARVIAASEFTPYAGLAWDDAMSFQCHPEFQPEYAAALVESRRGSRIPEALADEAVASLGRANDRAVLTAWIRAFLMLTPPPVEGEGSGI
>NC_014375.1|WP_050762577.1|2742561_2742885_-|endonuclease-domain-containing-protein
MRRVMTPPEARLWACLRGSRFRNLKYRRQHPVGPYILDFYCAAARLGVEIDGMGHASDEQAAHDRRRTAWLGGQGIKVIRLRAEDVRTELDGVLTFIGEAVRARLRD
>NC_014375.1|WP_013270151.1|2756486_2756915_-|CBS-domain-containing-protein
MLVAEILKSKGGDVFSIAPDMTLARACGELDRCRVGALIVCDGERVVGVFSERDLVKAVAADGAPGLERPVSHYMTKDVIFAEPGETVAILMGRMTDRRIRHLPVLKDNRLSGVISIGDVVKCQIAEATQEADSLRTYIAAG
>NC_014375.1|WP_050762512.1|2757010_2757637_-|rhomboid-family-intramembrane-serine-protease
MFNAPLPAVLLAASMPALYFFQARAHTYWLELSFAPIDLSQGRYAGLLTSMLVHGGWAHAAMNAVAALTFGTPVARLFRGGVGLVVFLSLYIVSGVVATLGYGLVHWGSSDPLVGASGAVFGLIGAATRLTGGGGRVQPLTNRAVITMSIAWMAVNVVLGLIGFAPGSEGARIAWEAHAFGFLFGILAIGPLARWFAPLPNRTDAGKV
>NC_014375.1|WP_013270153.1|2757962_2758397_+|holdfast-anchoring-protein-HfaA
MAVRRKILAGGGLALAVIAAPALAQTTGSGGMASFQNGYGGARQSVTTAQTGSTRDQNGNRLIVDGIIQAGASAYSAQSGGVSQTWSGSGNASGGSAIGGSTAIGNNLNVVVQGSHNTVIVNSRQTNTGNVSARTDLTGTLTGF
>NC_014375.1|WP_013270154.1|2758396_2759407_+|holdfast-anchoring-protein-HfaB
MRTTTLSRRLKIGGVTMAVTALLGACVSPVAGPNGRYATPIGNAPVTANPTPYSSALYCLADYARRYNLPSPRMAVGRISDYTGTVSSDGGRQVTGGASLMAFSALAKSGAQMVERYDTSISEMELRYANNRLIGDQGGTPEDPNYRRILAGQVPGSDFYLVGGITEVNYNIRSAGFDAGVGETDTDVPGSGILQGKVFVMNIAIDLRLVQTTTLEVVDVVSYQKQIIGREISAGVFDFLNGNVFDISAGTGGMEPVQLAVRALIERATVEFMANLYGAPGPEVCLNASNDPLNTVGPTGGYYPAYDNTGTNNGQTRADPSRWNDRRDSAVRRSRY
>NC_014375.1|WP_050762513.1|2759333_2760590_+|holdfast-anchor-protein-HfaD
MARPAPIRLAGTIAATALCVAAATSAFARTPPQDGVIVLNNQLRLGDVIAGQTLNVEGASDEVGATTSASGNIVSATAQDRDIQVSSTQTSNGDVRSTTTLNLDGDLEGPVNATTQSRGNYLAAAAYGGDVAIEATQDVGPSEITAGSTLNGPTARLLGGASIGVTAIGNTASMAASASHVSGTVIQRSEAGVRAENFAETQYIPATAEFISQSIANTTALNSGLASSQNLTIRQRSAGDAVTASTSANAANAWDLAGRARATANQTLLYNDGGSVVATTDQSNLSQVRASATVTSYDWGGAVAVAAGTGNEVVAGNNDIYLEIDNSQVNSGGIEVTAEFAGTNGYDAYVSADAVGNAVTGYVCSTCQGNLIATNSQTNSGPVSATSTTTINGTGRTIASSATAVGNTATFYVSRPGS
>NC_014375.1|WP_156796168.1|2760707_2763602_+|insulinase-family-protein
MAAPPSPGAVMTPRRLLLAAVSGLALLAGPLSGAALAQTAATAQPSDPWPQAASDIPADPAVRFGQLPNGMRYAILRNATPPGQASLRLRIDAGSLMENEDQLGLAHFMEHMAFNGTTNIPENELLRILERLGLAFGADTNAATSWDQTFYQLELPRTNDETVDTGLRIMREQVSEALMEADDIDAERGVIEGEERTRNTPGLRSAKAQFALLAPGQRVSQRFPIGDLEVIRTAPRQRFVDFYNAYYRPSRATMFAVGDFDVDVMEQKIRSAFEGWEPKAPDGPEPDLGQVAPREEETRILVEPGVQSSVQLNWVANPDRDPDTVAERRSRILRGLGLAVLNRRLGEIARADNPPFIAAGASSNTLFDSIDISTLTANFNPGGLQRALETAEQEQRRLIQFGVTEAELQREITDTRTSLENAVAAAATRSTPGLVNGLLTATNDDRVFSTPQTNLEIFNAAVDGLTPAQVDAAVKPVFEGQGPLALVVTPEEIEGGEAAVTAMLQASEATAVTARVAQAAAEWPYASFGTPAQPTERRELTEVGATLVTFANGTTLVVKPTTFRDEQILMTVRTGIGELGMPTNQVQAQTLAGFTFAAGGLGKLTADELARVLSGRIFGASFSTDGDAYQLAGATRPQDLALEMQLLTAYLTDPGLRPAPFEQIKAVFPQIIAQQSATPGGAFAIQSSGLLASGDARQTFPTAEQVAGFTNDQLKAQVTSGLSQGPISVVMVGDVTVDDAIAAVGSTLAALPARPAAPAPLPGSDALRFPAGTSTPVALTHNGPPEQALGYIAWPTTDQIADRTEARTVGILADVMELRVLDEIRERQALAYSPGVESSASEVYPGYGSIFVNAQTTPENLGAYFTAIDVIAASLRDTPIDEDELNRARAPTIEALRRSQAGNEYWLGQLEDVAARPETIQQTLTHISDLEALTPADIQAAARKYLVPEKAWRAQVTSANAAAQ
>NC_014375.1|WP_041762655.1|2763738_2764419_-|hypothetical-protein
MNVNVNVNANANANAGATAAARAGINARLNSYGNVRGGGGGGAYFSVEQPYPTVIQGLNVEAGAVAQVIRVPYEARRRWEKRVVIQAFCIDDRDVPHPASQVTGGRDVYDGYEGELYRCIAGTRLQVTWSEWTGQVSFEGGQTFACQKGEALWRDRAGDLRCKTQLVERDCNERSLLRRYGAGIKVLVWVKEEIYTEYREEVVQAQGISITGASMMLDGGVGGRVF
>NC_014375.1|WP_013270158.1|2764807_2765335_+|PAS-domain-containing-protein
MFHPGTQTLIDHWAALPAAGPIPPRARFEPMRLGRLVPQLFTADRSPDGATFRLAGAWIETLHGRPMRGVSWLDLWAPESRALVAAALVQTFREARPVVMVAEAARLRGVLEIVIAPLRGPDGEADRLLGLYQSAQEQERRREAVGPLSARLSVGVGVAGRPPLTLAAIDGRRIA
>NC_014375.1|WP_013270159.1|2765331_2765859_-|gamma-carbonic-anhydrase-family-protein
MTIYSLADKKPQLPPEGEYWIADNAVVIGDVILRSGASVWFGVTVRGDNDPITIGRNTNIQDGSVLHSDPGEPLTIGDNVTVGHMAMLHSCTIGDNTLIGIGAVVLGRAVIGKNCLIGANALITEGKVIPDGSLVMGQPGKVVRSLDEGQIAALAASADHYVQNWKRYAQGLTEV
>NC_014375.1|WP_013270160.1|2766162_2766939_+|PhoH-family-protein
MTKRAALKRQSREGGAFDGPDYGQDAKVRRLPTPQSRGAWSPHPSNDDREQGYLKTLKPKSEGQAQLLNAIDTHNLTLALGPAGTGKTYLAVAKAVEALEAGKVGRIVLSRPAVEAGESIGFLPGAMEDKLAPYLRPLYDALSDRLSMKRVGALMAEGLIEIAPVGYMRGRTLNNAFIVIDEAQNCTYVQLKMLLTRLGWHSNMVVTGDPGQTDLLPSLSGLADIATRLEAVPEIAVVRLAEGDIVRHPLVASMIGVL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1220806 : 1276884

Rhodobacter_phage(16.67%)

portal,protease,tail,head,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041761353.1\|1220806_1221370_-\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
WP_013268626.1\|1221504_1221675_+	hypothetical protein	NA	NA	NA	NA
WP_013268627.1\|1221773_1222412_+	heme-binding protein	NA	NA	NA	NA
WP_013268628.1\|1222498_1223212_-	response regulator transcription factor	F4YXP8	Roseobacter_phage	8.8e-17	52.7
WP_013268629.1\|1223499_1223877_+	replication initiation factor DnaA	NA	NA	NA	NA
WP_013268630.1\|1223873_1224620_+	hypothetical protein	NA	NA	NA	NA
WP_013268631.1\|1224733_1225156_+	hypothetical protein	NA	NA	NA	NA
WP_013268632.1\|1225152_1226268_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_013268633.1\|1226264_1227161_-	hypothetical protein	NA	NA	NA	NA
WP_013268634.1\|1227238_1228000_-	ABC transporter permease	NA	NA	NA	NA
WP_013268635.1\|1227996_1228746_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-18	31.5
WP_013268636.1\|1228738_1229773_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013268637.1\|1230419_1232240_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	3.7e-27	26.0
WP_083777583.1\|1232437_1232698_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_013268639.1\|1232779_1233229_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_013268640.1\|1233298_1236046_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	4.4e-48	32.8
WP_013268641.1\|1236042_1236426_+	response regulator	NA	NA	NA	NA
WP_156796119.1\|1236500_1236959_-	hypothetical protein	NA	NA	NA	NA
WP_041762172.1\|1237023_1238166_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	2.9e-62	41.2
WP_013268643.1\|1238188_1238470_+	hypothetical protein	NA	NA	NA	NA
WP_013268644.1\|1238495_1238678_+	hypothetical protein	NA	NA	NA	NA
WP_013268645.1\|1238680_1239400_+	hypothetical protein	M9MUN9	Rhodococcus_phage	9.5e-11	31.8
WP_156796257.1\|1239629_1240154_-	hypothetical protein	A0A2K9L181	Tupanvirus	1.7e-09	28.7
WP_013268648.1\|1240359_1240539_-	hypothetical protein	NA	NA	NA	NA
WP_013268649.1\|1240772_1240952_-	hypothetical protein	NA	NA	NA	NA
WP_013268651.1\|1241356_1242526_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	5.4e-72	39.7
WP_013268652.1\|1242525_1242753_+	hypothetical protein	NA	NA	NA	NA
WP_041761362.1\|1242815_1243208_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.2e-20	44.7
WP_013268654.1\|1243225_1244929_+	recombinase family protein	Q3HQV4	Burkholderia_phage	8.0e-32	31.1
WP_013268655.1\|1245181_1245541_+	hypothetical protein	NA	NA	NA	NA
WP_013268656.1\|1245744_1245984_+	hypothetical protein	NA	NA	NA	NA
WP_041761368.1\|1245991_1246450_+	hypothetical protein	NA	NA	NA	NA
WP_083777531.1\|1246721_1247294_+	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_013268659.1\|1247536_1249114_+	hypothetical protein	A0A2D2W215	Stenotrophomonas_phage	7.6e-37	30.5
WP_156796120.1\|1249438_1249714_-	hypothetical protein	NA	NA	NA	NA
WP_013268660.1\|1249860_1250433_+	recombinase family protein	M9Q1K0	Clostridium_phage	2.9e-26	41.8
WP_013268661.1\|1250834_1251803_-	hypothetical protein	NA	NA	NA	NA
WP_041761376.1\|1251763_1252069_-	hypothetical protein	NA	NA	NA	NA
WP_156796122.1\|1252120_1252393_+	hypothetical protein	NA	NA	NA	NA
WP_013268663.1\|1252690_1253749_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	3.0e-21	28.4
WP_013268664.1\|1253754_1254372_+	hypothetical protein	NA	NA	NA	NA
WP_013268665.1\|1254683_1255880_-	TDT family transporter	NA	NA	NA	NA
WP_013268666.1\|1256018_1256897_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041762180.1\|1257029_1257413_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.6e-12	46.7
WP_013268668.1\|1257416_1258856_+	YncE family protein	NA	NA	NA	NA
WP_013268669.1\|1258866_1259535_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_156796123.1\|1259845_1260910_+	hypothetical protein	NA	NA	NA	NA
WP_169308013.1\|1260924_1261239_+	DUF4325 domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	6.6e-09	36.5
WP_156796258.1\|1261728_1262151_-	hypothetical protein	NA	NA	NA	NA
WP_013268673.1\|1262440_1263703_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	1.1e-78	42.6
WP_013268674.1\|1263905_1264172_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_156796259.1\|1264186_1264480_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013268676.1\|1264476_1264884_+	DUF3168 domain-containing protein	I3UM06	Rhodobacter_phage	3.1e-06	35.7
WP_013268677.1\|1265041_1265452_+\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	2.3e-17	38.7
WP_013268678.1\|1265448_1265808_-	hypothetical protein	NA	NA	NA	NA
WP_013268679.1\|1265818_1266133_+	gene transfer agent family protein	NA	NA	NA	NA
WP_156796260.1\|1266149_1266302_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_013268682.1\|1266454_1266991_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_013268683.1\|1266997_1267684_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_013268684.1\|1267773_1268412_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.0e-48	46.4
WP_013268685.1\|1268546_1269188_+	DUF2163 domain-containing protein	A0A0K1Y6Z2	Rhodobacter_phage	2.9e-19	36.3
WP_156796261.1\|1269070_1269643_+	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.2e-32	48.6
WP_013268687.1\|1269642_1273332_+\|tail	glycoside hydrolase/phage tail family protein	A0A0K1Y6G6	Rhodobacter_phage	6.1e-202	37.7
WP_041761380.1\|1273433_1274351_+	DnaJ domain-containing protein	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	1.8e-09	25.7
WP_156796124.1\|1274347_1275508_+	phosphoserine transaminase	NA	NA	NA	NA
WP_013268690.1\|1275588_1276884_+	adenylosuccinate synthase	A0A291AUF9	Pandoravirus	1.1e-57	33.5

DBSCAN-SWA_2

1350917 : 1377880

Sinorhizobium_phage(22.22%)

portal,head,tail,integrase,terminase,capsid

attL 1350208:1350226|attR 1358383:1358401

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1350208:1350226	attL	NA	NA	NA	NA
WP_013268766.1\|1350917_1352126_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013268767.1\|1352107_1352482_-	hypothetical protein	NA	NA	NA	NA
WP_013268768.1\|1352705_1352975_-	hypothetical protein	NA	NA	NA	NA
WP_013268769.1\|1352971_1353247_-	hypothetical protein	NA	NA	NA	NA
WP_013268770.1\|1353243_1354371_-	phage Gp37/Gp68 family protein	A0A291AUR0	Sinorhizobium_phage	5.2e-96	46.1
WP_013268771.1\|1354370_1354640_-	hypothetical protein	NA	NA	NA	NA
WP_041761394.1\|1354632_1354887_-	hypothetical protein	NA	NA	NA	NA
WP_013268773.1\|1354954_1355101_-	hypothetical protein	NA	NA	NA	NA
WP_013268774.1\|1355097_1355433_-	hypothetical protein	NA	NA	NA	NA
WP_013268775.1\|1355525_1357955_-	ParB domain-containing protein nuclease	NA	NA	NA	NA
WP_013268777.1\|1358058_1358610_-	hypothetical protein	NA	NA	NA	NA
1358383:1358401	attR	NA	NA	NA	NA
WP_013268778.1\|1358606_1359041_-	hypothetical protein	NA	NA	NA	NA
WP_013268779.1\|1359245_1360316_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	6.1e-54	39.0
WP_083777534.1\|1360312_1360972_-	peptidase S24	NA	NA	NA	NA
WP_013268781.1\|1361478_1361718_-	hypothetical protein	NA	NA	NA	NA
WP_013268782.1\|1361771_1362224_+	hypothetical protein	NA	NA	NA	NA
WP_013268783.1\|1362220_1362565_+	hypothetical protein	NA	NA	NA	NA
WP_041761395.1\|1362924_1363596_+	hypothetical protein	NA	NA	NA	NA
WP_041761398.1\|1363664_1364411_+	hypothetical protein	NA	NA	NA	NA
WP_013268787.1\|1364410_1364803_+	hypothetical protein	NA	NA	NA	NA
WP_013268788.1\|1364802_1366044_+	hypothetical protein	NA	NA	NA	NA
WP_013268789.1\|1366040_1367885_+	hypothetical protein	A0A291LAR9	Bordetella_phage	7.1e-18	25.8
WP_013268790.1\|1368128_1368695_+	NGN domain-containing protein	NA	NA	NA	NA
WP_013268791.1\|1368920_1369553_+	hypothetical protein	NA	NA	NA	NA
WP_013268792.1\|1369555_1371643_+\|terminase	phage terminase large subunit family protein	G8DH41	Emiliania_huxleyi_virus	1.2e-69	31.5
WP_013268793.1\|1371642_1371855_+\|head,tail	head-to-tail joining protein	NA	NA	NA	NA
WP_013268794.1\|1371863_1373540_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	3.3e-78	36.2
WP_013268795.1\|1373549_1375112_+	S49 family peptidase	G0YPK2	Erwinia_phage	3.1e-14	29.9
WP_013268796.1\|1375168_1375567_+\|head	head decoration protein	R9TP46	Rhizobium_phage	3.0e-06	33.3
WP_013268797.1\|1375666_1376746_+\|capsid	major capsid protein	A0A2H4EW45	Aeromonas_phage	3.3e-07	22.4
WP_013268798.1\|1376810_1377155_+	hypothetical protein	NA	NA	NA	NA
WP_013268799.1\|1377151_1377880_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	7.1e-14	36.7

DBSCAN-SWA_3

1863516 : 1869605

Orpheovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013269293.1\|1863516_1864743_+	5-aminolevulinate synthase	V5LQ39	Emiliania_huxleyi_virus	6.1e-34	28.1
WP_013269294.1\|1864742_1864922_+	hypothetical protein	NA	NA	NA	NA
WP_013269295.1\|1864987_1866283_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.3e-94	51.7
WP_013269296.1\|1866292_1866769_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_013269297.1\|1866768_1867401_+	RibD family protein	A0A2I2L4R9	Orpheovirus	1.7e-16	32.2
WP_013269298.1\|1867405_1867996_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.3e-29	39.7
WP_156796284.1\|1867995_1869147_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	7.2e-53	37.6
WP_041761501.1\|1869143_1869605_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	5.0e-05	28.8

DBSCAN-SWA_4

1898856 : 1906744

Cafeteria_roenbergensis_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013269333.1\|1898856_1900416_+	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	2.3e-46	31.0
WP_013269334.1\|1900402_1901623_-	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	1.1e-38	30.9
WP_083777593.1\|1901656_1903159_-	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	9.5e-53	31.7
WP_013269336.1\|1903246_1904113_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.9e-50	45.1
WP_013269338.1\|1904285_1905746_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	A0A1B1IUK5	uncultured_Mediterranean_phage	3.3e-34	30.1
WP_041762362.1\|1905754_1906744_+	ADP-glyceromanno-heptose 6-epimerase	A0A1D8KJQ4	Synechococcus_phage	2.5e-22	29.5

DBSCAN-SWA_5

1968046 : 1975243

Acidithiobacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013269405.1\|1968046_1969027_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	9.6e-06	30.4
WP_013269406.1\|1969023_1969650_-	dTMP kinase	Q2Z0N0	Pseudomonas_phage	6.3e-27	40.2
WP_013269407.1\|1969698_1970535_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.6e-17	50.6
WP_013269408.1\|1971087_1972725_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	8.4e-87	46.7
WP_156796140.1\|1972721_1973114_-	DUF2924 domain-containing protein	NA	NA	NA	NA
WP_013269410.1\|1973149_1973413_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	4.4e-06	54.7
WP_013269411.1\|1973806_1975243_+	ParB N-terminal domain-containing protein	A0A2H4JGF1	uncultured_Caudovirales_phage	1.3e-64	37.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage