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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014388 Butyrivibrio proteoclasticus B316 chromosome 2, complete sequence 0 crisprs cas14k,WYL,RT 0 0 1 0
NC_014390 Butyrivibrio proteoclasticus B316 plasmid pCY186, complete sequence 0 crisprs WYL,DEDDh 0 0 0 0
NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 1 crisprs PD-DExK,cas14j,DEDDh,cas14k,c2c10_CAS-V-U3,cas12a 0 10 1 0
NC_014387 Butyrivibrio proteoclasticus B316 chromosome 1, complete sequence 5 crisprs c2c10_CAS-V-U3,DEDDh,RT,csa3,WYL,DinG 0 1 1 0

Results visualization

1. NC_014387
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014387_1 270736-270836 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014387_2 359304-359422 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014387_3 785462-785544 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014387_4 1123903-1123993 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014387_5 2264584-2264686 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014387_3 3.1|785491|25|NC_014387|CRISPRCasFinder 785491-785515 25 NZ_CP033038 Agrobacterium fabrum strain 12D13 plasmid pAt12D13c, complete sequence 27838-27862 2 0.92
NC_014387_3 3.1|785491|25|NC_014387|CRISPRCasFinder 785491-785515 25 NC_015724 Cupriavidus necator N-1 plasmid pBB2, complete sequence 416678-416702 3 0.88

1. spacer 3.1|785491|25|NC_014387|CRISPRCasFinder matches to NZ_CP033038 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13c, complete sequence) position: , mismatch: 2, identity: 0.92

tgcggcttgcggaagcgcttgcggg	CRISPR spacer
tgcggcttgcggaagcgcttgcgtc	Protospacer
***********************  

2. spacer 3.1|785491|25|NC_014387|CRISPRCasFinder matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 3, identity: 0.88

tgcggcttgcggaagcgcttgcggg	CRISPR spacer
ttcagctcgcggaagcgcttgcggg	Protospacer
* *.***.*****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1385734 : 1458193 54 Tupanvirus(22.22%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_014389
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014389_1 336109-336644 TypeV-A NA
8 spacers
c2c10_CAS-V-U3,cas12a

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014389_1 1.1|336127|49|NC_014389|CRT 336127-336175 49 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336127-336175 0 1.0
NC_014389_1 1.2|336194|48|NC_014389|CRT 336194-336241 48 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336194-336241 0 1.0
NC_014389_1 1.3|336260|43|NC_014389|CRT 336260-336302 43 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336260-336302 0 1.0
NC_014389_1 1.3|336260|43|NC_014389|CRT 336260-336302 43 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336453-336495 0 1.0
NC_014389_1 1.4|336321|47|NC_014389|CRT 336321-336367 47 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336321-336367 0 1.0
NC_014389_1 1.4|336321|47|NC_014389|CRT 336321-336367 47 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336514-336560 0 1.0
NC_014389_1 1.5|336386|49|NC_014389|CRT 336386-336434 49 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336386-336434 0 1.0
NC_014389_1 1.6|336453|43|NC_014389|CRT 336453-336495 43 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336260-336302 0 1.0
NC_014389_1 1.6|336453|43|NC_014389|CRT 336453-336495 43 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336453-336495 0 1.0
NC_014389_1 1.7|336514|47|NC_014389|CRT 336514-336560 47 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336321-336367 0 1.0
NC_014389_1 1.7|336514|47|NC_014389|CRT 336514-336560 47 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336514-336560 0 1.0
NC_014389_1 1.8|336579|48|NC_014389|CRT 336579-336626 48 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336579-336626 0 1.0
NC_014389_1 1.9|336215|30|NC_014389|PILER-CR 336215-336244 30 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336194-336223 0 1.0
NC_014389_1 1.10|336284|25|NC_014389|PILER-CR 336284-336308 25 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336260-336284 0 1.0
NC_014389_1 1.10|336284|25|NC_014389|PILER-CR 336284-336308 25 NC_014389 Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence 336453-336477 0 1.0
NC_014389_1 1.10|336284|25|NC_014389|PILER-CR 336284-336308 25 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 86189-86213 4 0.84
NC_014389_1 1.10|336284|25|NC_014389|PILER-CR 336284-336308 25 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 25946-25970 4 0.84

1. spacer 1.1|336127|49|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

gccatgcatttggtaatcctcacgaatcgcacctaacaagcaggtatta	CRISPR spacer
gccatgcatttggtaatcctcacgaatcgcacctaacaagcaggtatta	Protospacer
*************************************************

2. spacer 1.2|336194|48|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

acaaaaaagaatgccagatgtcaagcacctacctaattactaggtaat	CRISPR spacer
acaaaaaagaatgccagatgtcaagcacctacctaattactaggtaat	Protospacer
************************************************

3. spacer 1.3|336260|43|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacaattgaaaggagaaacgtacacctaattactaggtaa	CRISPR spacer
aacaacaattgaaaggagaaacgtacacctaattactaggtaa	Protospacer
*******************************************

4. spacer 1.3|336260|43|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacaattgaaaggagaaacgtacacctaattactaggtaa	CRISPR spacer
aacaacaattgaaaggagaaacgtacacctaattactaggtaa	Protospacer
*******************************************

5. spacer 1.4|336321|47|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	CRISPR spacer
gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	Protospacer
***********************************************

6. spacer 1.4|336321|47|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	CRISPR spacer
gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	Protospacer
***********************************************

7. spacer 1.5|336386|49|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

agtccttgaatggctaatcaacttgccacaacctaattactaggtaatt	CRISPR spacer
agtccttgaatggctaatcaacttgccacaacctaattactaggtaatt	Protospacer
*************************************************

8. spacer 1.6|336453|43|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacaattgaaaggagaaacgtacacctaattactaggtaa	CRISPR spacer
aacaacaattgaaaggagaaacgtacacctaattactaggtaa	Protospacer
*******************************************

9. spacer 1.6|336453|43|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacaattgaaaggagaaacgtacacctaattactaggtaa	CRISPR spacer
aacaacaattgaaaggagaaacgtacacctaattactaggtaa	Protospacer
*******************************************

10. spacer 1.7|336514|47|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	CRISPR spacer
gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	Protospacer
***********************************************

11. spacer 1.7|336514|47|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	CRISPR spacer
gcttccgaccaagaatgggtcgcctggaatacctaacaagtaggtat	Protospacer
***********************************************

12. spacer 1.8|336579|48|NC_014389|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

tcattgcgatctcatctcctttctgcgacgacctaacaagtaggtatt	CRISPR spacer
tcattgcgatctcatctcctttctgcgacgacctaacaagtaggtatt	Protospacer
************************************************

13. spacer 1.9|336215|30|NC_014389|PILER-CR matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

acaaaaaagaatgccagatgtcaagcacct	CRISPR spacer
acaaaaaagaatgccagatgtcaagcacct	Protospacer
******************************

14. spacer 1.10|336284|25|NC_014389|PILER-CR matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacaattgaaaggagaaacgta	CRISPR spacer
aacaacaattgaaaggagaaacgta	Protospacer
*************************

15. spacer 1.10|336284|25|NC_014389|PILER-CR matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 0, identity: 1.0

aacaacaattgaaaggagaaacgta	CRISPR spacer
aacaacaattgaaaggagaaacgta	Protospacer
*************************

16. spacer 1.10|336284|25|NC_014389|PILER-CR matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 4, identity: 0.84

aacaacaattgaaaggagaaacgta	CRISPR spacer
aacaactattgaaaggagaaatctt	Protospacer
****** **************. * 

17. spacer 1.10|336284|25|NC_014389|PILER-CR matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 4, identity: 0.84

aacaacaattgaaaggagaaacgta	CRISPR spacer
aacaactattgaaaggagaaatctt	Protospacer
****** **************. * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 296861 : 345064 55 Bacteriophage(33.33%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_014388
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 71646 : 111667 33 Tupanvirus(14.29%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage