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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014410 Thermoanaerobacterium thermosaccharolyticum DSM 571, complete genome 5 crisprs cas3,cas14j,cas4,csa3,WYL,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh,cas2,cas1,cas5,cas7,cas8b1,cas6,csm2gr11,csm3gr7,csx10gr5,csx20,cas8a4 0 13 8 0

Results visualization

1. NC_014410
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014410_1 309414-312133 Orphan NA
40 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014410_2 315799-316092 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014410_3 318047-319079 Orphan NA
15 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014410_4 2643518-2647416 TypeIII NA
58 spacers
cas4,cas1,cas2,csx1,cas3,cas5,cas7,cas8b1,cas6,csm2gr11,csm3gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014410_5 2723692-2726373 Unclear I-A,II-B,III-A
40 spacers
cas6,cas2,cas1,cas4,cas5,cas7,cas8a4,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014410_5 5.35|2725976|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2725976-2726010 35 CP003186 Thermoanaerobacterium phage THSA-485A, complete genome 35350-35384 1 0.971
NC_014410_1 1.18|310582|39|NC_014410|PILER-CR,CRISPRCasFinder,CRT 310582-310620 39 CP003186 Thermoanaerobacterium phage THSA-485A, complete genome 30773-30811 2 0.949
NC_014410_4 4.3|2643682|35|NC_014410|CRISPRCasFinder,CRT 2643682-2643716 35 CP003186 Thermoanaerobacterium phage THSA-485A, complete genome 38266-38300 2 0.943
NC_014410_4 4.24|2645075|37|NC_014410|CRISPRCasFinder,CRT 2645075-2645111 37 NZ_CP006906 Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence 114997-115033 5 0.865
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 FN667788 Campylobacter phage CP220, complete genome 166761-166795 8 0.771
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_LR135375 Enterococcus faecium isolate E8172 plasmid 4 15892-15928 8 0.784
NC_014410_5 5.31|2725710|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2725710-2725744 35 MN694578 Marine virus AFVG_250M492, complete genome 13942-13976 8 0.771
NC_014410_5 5.31|2725710|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2725710-2725744 35 MN693901 Marine virus AFVG_250M491, complete genome 27732-27766 8 0.771
NC_014410_5 5.31|2725710|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2725710-2725744 35 MN694641 Marine virus AFVG_250M490, complete genome 27736-27770 8 0.771
NC_014410_3 3.6|318416|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 318416-318452 37 NZ_CP040783 Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence 244117-244153 9 0.757
NC_014410_4 4.19|2644744|37|NC_014410|CRISPRCasFinder,CRT 2644744-2644780 37 NZ_CP050184 Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence 272540-272576 9 0.757
NC_014410_4 4.19|2644744|37|NC_014410|CRISPRCasFinder,CRT 2644744-2644780 37 NZ_CP007513 Bacillus bombysepticus plasmid pBb, complete genome 150658-150694 9 0.757
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 NZ_CP010112 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence 304027-304061 9 0.743
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 NZ_CP009636 Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence 218353-218387 9 0.743
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 NZ_CP053962 Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence 43796-43830 9 0.743
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 NZ_CP016596 Bacillus cereus strain K8 plasmid pBCM301, complete sequence 138974-139008 9 0.743
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 NC_019507 Campylobacter phage CP21, complete genome 80834-80868 9 0.743
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 HE815464 Campylobacter phage CP21 complete sequence 80834-80868 9 0.743
NC_014410_4 4.36|2645885|36|NC_014410|CRISPRCasFinder,CRT,PILER-CR 2645885-2645920 36 NZ_CP009047 Staphylococcus epidermidis strain SEI plasmid unnamed, complete sequence 34194-34229 9 0.75
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NC_002137 Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence 10539-10575 9 0.757
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP014901 Lactobacillus backii strain TMW 1.2002 plasmid pL12002-2, complete sequence 4136-4172 9 0.757
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP016751 Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence 10693-10729 9 0.757
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NC_015864 Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence 28257-28293 9 0.757
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP014875 Lactobacillus backii strain TMW 1.1989 plasmid pL11989-2, complete sequence 7466-7502 9 0.757
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP016710 Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109D, complete sequence 11020-11056 9 0.757
NC_014410_4 4.14|2644414|35|NC_014410|CRISPRCasFinder,CRT 2644414-2644448 35 KF669662 Bacillus phage Spock, complete genome 83390-83424 10 0.714
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 NC_041831 Campylobacter phage vB_CcoM-IBB_35 clone Contig3, complete sequence 4186-4220 10 0.714
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP031543 Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107E, complete sequence 13262-13298 10 0.73
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NC_016042 Lactococcus lactis subsp. lactis plasmid pKP1, complete sequence 284-320 10 0.73
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NC_004959 Lactococcus lactis W-37 plasmid pSRQ900, complete sequence 10791-10827 10 0.73
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NC_004960 Lactococcus lactis W-1 plasmid pSRQ800, complete sequence 7814-7850 10 0.73
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NC_016971 Lactococcus garvieae 21881 plasmid pGL4 complete sequence 458-494 10 0.73
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP032127 Acinetobacter chinensis strain WCHAc010005 plasmid p1_010005, complete sequence 12085-12121 10 0.73
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_AP017399 Lactococcus garvieae plasmid pNALG-1 DNA, complete sequence, strain: 122061 1321-1357 10 0.73
NC_014410_3 3.6|318416|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 318416-318452 37 NC_008387 Roseobacter denitrificans OCh 114 plasmid pTB2, complete sequence 56273-56309 11 0.703
NC_014410_3 3.6|318416|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 318416-318452 37 NZ_CP027408 Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed2, complete sequence 36132-36168 11 0.703
NC_014410_4 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT 2644811-2644845 35 MT774383 CrAssphage cr11_1, complete genome 44315-44349 11 0.686
NC_014410_4 4.47|2646622|36|NC_014410|CRISPRCasFinder,CRT,PILER-CR 2646622-2646657 36 NC_010895 Bacillus thuringiensis serovar tenebrionis plasmid pBMB175, complete sequence 4141-4176 11 0.694
NC_014410_5 5.10|2724318|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724318-2724352 35 AP014086 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C3-MedDCM-OCT-S45-C97, *** SEQUENCING IN PROGRESS *** 9100-9134 11 0.686
NC_014410_5 5.10|2724318|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724318-2724352 35 AP014087 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C3-MedDCM-OCT-S46-C100, *** SEQUENCING IN PROGRESS *** 7494-7528 11 0.686
NC_014410_5 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT 2724715-2724751 37 NZ_CP015179 Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB57, complete sequence 31000-31036 12 0.676

1. spacer 5.35|2725976|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 1, identity: 0.971

tcaatagattcagtgataaatttagtaagagcaaa	CRISPR spacer
tcaatagattcagtgataaatttagtaagaacaaa	Protospacer
******************************.****

2. spacer 1.18|310582|39|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 2, identity: 0.949

aatgttctaattgtttaattttgtcattcataacattaa	CRISPR spacer
gatattctaattgtttaattttgtcattcataacattaa	Protospacer
.**.***********************************

3. spacer 4.3|2643682|35|NC_014410|CRISPRCasFinder,CRT matches to CP003186 (Thermoanaerobacterium phage THSA-485A, complete genome) position: , mismatch: 2, identity: 0.943

ttactttgcctacaaatgtaaacattctgtatgga	CRISPR spacer
ttactttgcctacaaatgtaaacattctatatggg	Protospacer
****************************.*****.

4. spacer 4.24|2645075|37|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 5, identity: 0.865

ctttttcacgaaatggtacattcaacaggacatgaaa	CRISPR spacer
gcttttcacgaaatggtacattcaacaggtcataaag	Protospacer
 .*************************** ***.**.

5. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 8, identity: 0.771

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
tttccatttatcaccaatattaattttgttattga	Protospacer
     ******************* ******* .*

6. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135375 (Enterococcus faecium isolate E8172 plasmid 4) position: , mismatch: 8, identity: 0.784

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
tattttttatttttttcaaaaatgtaaaagtaacgat	Protospacer
* ********* **** ***********..**   **

7. spacer 5.31|2725710|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to MN694578 (Marine virus AFVG_250M492, complete genome) position: , mismatch: 8, identity: 0.771

----gaacctgtagtagaagataacacaagtacaaaaga	CRISPR spacer
tggggaa----tagtagaagataatacaattacaaaact	Protospacer
    ***    *************.**** *******  

8. spacer 5.31|2725710|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to MN693901 (Marine virus AFVG_250M491, complete genome) position: , mismatch: 8, identity: 0.771

----gaacctgtagtagaagataacacaagtacaaaaga	CRISPR spacer
tggggaa----tagtagaagataatacaattacaaaact	Protospacer
    ***    *************.**** *******  

9. spacer 5.31|2725710|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to MN694641 (Marine virus AFVG_250M490, complete genome) position: , mismatch: 8, identity: 0.771

----gaacctgtagtagaagataacacaagtacaaaaga	CRISPR spacer
tggggaa----tagtagaagataatacaattacaaaact	Protospacer
    ***    *************.**** *******  

10. spacer 3.6|318416|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.757

caattatatgttatgtttagttacaagtcaattttaa	CRISPR spacer
taattatatgtaatctttagttacaagatctttctat	Protospacer
.********** ** ************ .  **.** 

11. spacer 4.19|2644744|37|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 9, identity: 0.757

tagaagaaaacataaaagaaaaatttaataaattcta	CRISPR spacer
aagaaaaaaacataaaagaaaaagttagaattttaca	Protospacer
 ****.***************** ***. *  ** .*

12. spacer 4.19|2644744|37|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 9, identity: 0.757

tagaagaaaacataaaagaaaaatttaataaattcta	CRISPR spacer
aagaaaaaaacataaaagaaaaagttagaattttaca	Protospacer
 ****.***************** ***. *  ** .*

13. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 9, identity: 0.743

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
cataattttttcaccaatattaatattgttcatat	Protospacer
 . ** *** ********************   * 

14. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 9, identity: 0.743

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
cataattttttcaccaatattaatattgttcatat	Protospacer
 . ** *** ********************   * 

15. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
cataattttttcaccaatattaatattgttcatat	Protospacer
 . ** *** ********************   * 

16. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 9, identity: 0.743

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
cataattttttcaccaatattaatattgttcatat	Protospacer
 . ** *** ********************   * 

17. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 9, identity: 0.743

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
tttccatttatcaccaatattaatttttttattga	Protospacer
     ******************* ** **** .*

18. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 9, identity: 0.743

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
tttccatttatcaccaatattaatttttttattga	Protospacer
     ******************* ** **** .*

19. spacer 4.36|2645885|36|NC_014410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009047 (Staphylococcus epidermidis strain SEI plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

agttaatcccaccaattctttatatatttttttaaa	CRISPR spacer
aattctattaaccaattctttatatactttattaaa	Protospacer
*.**   .. ****************.*** *****

20. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_002137 (Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence) position: , mismatch: 9, identity: 0.757

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ttttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
*.********* **** ***********. .* * .*

21. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014901 (Lactobacillus backii strain TMW 1.2002 plasmid pL12002-2, complete sequence) position: , mismatch: 9, identity: 0.757

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ttttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
*.********* **** ***********. .* * .*

22. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016751 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence) position: , mismatch: 9, identity: 0.757

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ttttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
*.********* **** ***********. .* * .*

23. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 9, identity: 0.757

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ctttttttatttttttcaaaaatgtaaaactaaaggt	Protospacer
..********* **** ***********. ** * .*

24. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014875 (Lactobacillus backii strain TMW 1.1989 plasmid pL11989-2, complete sequence) position: , mismatch: 9, identity: 0.757

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ttttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
*.********* **** ***********. .* * .*

25. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016710 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109D, complete sequence) position: , mismatch: 9, identity: 0.757

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ttttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
*.********* **** ***********. .* * .*

26. spacer 4.14|2644414|35|NC_014410|CRISPRCasFinder,CRT matches to KF669662 (Bacillus phage Spock, complete genome) position: , mismatch: 10, identity: 0.714

gggaatcagtagaagtataagaaacaagattacct	CRISPR spacer
gggaataagtataagtataagaaacctgcggaatc	Protospacer
****** **** *************  *   * ..

27. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to NC_041831 (Campylobacter phage vB_CcoM-IBB_35 clone Contig3, complete sequence) position: , mismatch: 10, identity: 0.714

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
tttccacttatcaccaatattaatttttttattga	Protospacer
     *.***************** ** **** .*

28. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031543 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107E, complete sequence) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ctttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
..********* **** ***********. .* * .*

29. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_016042 (Lactococcus lactis subsp. lactis plasmid pKP1, complete sequence) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
tattttttatttttttcaaaaatgtaaaatccaaagt	Protospacer
* ********* **** ***********. .  * .*

30. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_004959 (Lactococcus lactis W-37 plasmid pSRQ900, complete sequence) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
tattttttatttttttcaaaaatgtaaaatccaaagt	Protospacer
* ********* **** ***********. .  * .*

31. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_004960 (Lactococcus lactis W-1 plasmid pSRQ800, complete sequence) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ctttttttatttttttcaaaaatgtaaaaccaaaggt	Protospacer
..********* **** ***********. .* * .*

32. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_016971 (Lactococcus garvieae 21881 plasmid pGL4 complete sequence) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
tattttttatttttttcaaaaatgtaaaatccaaagt	Protospacer
* ********* **** ***********. .  * .*

33. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032127 (Acinetobacter chinensis strain WCHAc010005 plasmid p1_010005, complete sequence) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ctttacttattgttttgaaaaatttgaagataaaagc	Protospacer
..** .***************** *.****** * ..

34. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017399 (Lactococcus garvieae plasmid pNALG-1 DNA, complete sequence, strain: 122061) position: , mismatch: 10, identity: 0.73

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
tattttttatttttttcaaaaatgtaaaatccaaagt	Protospacer
* ********* **** ***********. .  * .*

35. spacer 3.6|318416|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NC_008387 (Roseobacter denitrificans OCh 114 plasmid pTB2, complete sequence) position: , mismatch: 11, identity: 0.703

caattatatgttatgtttagttacaagtcaattttaa	CRISPR spacer
taattatatgttattattagttacaagaactatgtgg	Protospacer
.*************  ***********     * *..

36. spacer 3.6|318416|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027408 (Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.703

caattatatgttatgtttagttacaagtcaattttaa	CRISPR spacer
taattatatgttattattagttacaagaactatgtgg	Protospacer
.*************  ***********     * *..

37. spacer 4.20|2644811|35|NC_014410|CRISPRCasFinder,CRT matches to MT774383 (CrAssphage cr11_1, complete genome) position: , mismatch: 11, identity: 0.686

aggaaatttatcaccaatattaatattgttatgaa	CRISPR spacer
atttgtcttattactaatattaatattgttattcc	Protospacer
*   . .****.**.*****************   

38. spacer 4.47|2646622|36|NC_014410|CRISPRCasFinder,CRT,PILER-CR matches to NC_010895 (Bacillus thuringiensis serovar tenebrionis plasmid pBMB175, complete sequence) position: , mismatch: 11, identity: 0.694

gcctttctttaattcctaattcctttgctgtatctc	CRISPR spacer
tatccttactaattcctaattcctttgctacatcta	Protospacer
  ...*. .********************..**** 

39. spacer 5.10|2724318|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to AP014086 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C3-MedDCM-OCT-S45-C97, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.686

agaacgttaaaaacttgttatcaattaatggcgga	CRISPR spacer
caattcttaaaaacttattatcaatttatggaatc	Protospacer
 .* . **********.********* **** .  

40. spacer 5.10|2724318|35|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to AP014087 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C3-MedDCM-OCT-S46-C100, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.686

agaacgttaaaaacttgttatcaattaatggcgga	CRISPR spacer
caattcttaaaaacttattatcaatttatggaatc	Protospacer
 .* . **********.********* **** .  

41. spacer 5.16|2724715|37|NC_014410|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015179 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB57, complete sequence) position: , mismatch: 12, identity: 0.676

tcttttttattgttttgaaaaatgtaaagatatatat	CRISPR spacer
ctgtaacgattgttttgaaaaacgtaaagacatagta	Protospacer
.. *  . **************.*******.***   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 19857 : 28775 8 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_2 187275 : 194829 7 Hokovirus(33.33%) NA NA
DBSCAN-SWA_3 294583 : 347929 46 Staphylococcus_phage(33.33%) holin,integrase,transposase attL 286221:286236|attR 308736:308751
DBSCAN-SWA_4 803933 : 870786 69 Erysipelothrix_phage(75.86%) transposase,coat,holin,terminase,portal,protease,tail,capsid,head NA
DBSCAN-SWA_5 1374756 : 1384501 10 Wolbachia_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1944730 : 1953161 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_7 2103171 : 2112671 7 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_8 2705012 : 2757478 39 Bacillus_phage(33.33%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage