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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047261 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047260 Pseudomonas syringae pv. maculicola str. ES4326 chromosome, complete genome 4 crisprs DEDDh,csa3,cas3,DinG,PD-DExK 1 0 16 0
NZ_CP047262 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047264 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326E, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047263 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326B, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP047260
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047260_1 920306-920398 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047260_2 3298294-3298396 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047260_3 4777526-4777591 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047260_4 4777676-4777767 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047260_3 3.1|4777549|19|NZ_CP047260|CRISPRCasFinder 4777549-4777567 19 NZ_CP047260.1 6036985-6037003 2 0.895

1. spacer 3.1|4777549|19|NZ_CP047260|CRISPRCasFinder matches to position: 6036985-6037003, mismatch: 2, identity: 0.895

cgaggttgtcgagggtgcc	CRISPR spacer
cgaagttgttgagggtgcc	Protospacer
***.*****.*********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 52853 : 97051 41 Planktothrix_phage(28.57%) transposase NA
DBSCAN-SWA_2 362159 : 447566 58 Bacillus_virus(25.0%) holin,transposase NA
DBSCAN-SWA_3 540155 : 633130 86 uncultured_Caudovirales_phage(28.57%) integrase,tRNA,transposase attL 546809:546826|attR 630699:631898
DBSCAN-SWA_4 1001133 : 1060439 50 Pseudomonas_phage(46.15%) tail,tRNA,transposase NA
DBSCAN-SWA_5 2024315 : 2065986 60 Pseudomonas_phage(50.0%) integrase attL 2022388:2022403|attR 2044536:2044551
DBSCAN-SWA_6 2071841 : 2080008 10 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_7 2235456 : 2296587 50 Leptospira_phage(33.33%) plate,transposase NA
DBSCAN-SWA_8 3120207 : 3126429 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_9 3436074 : 3487101 32 Leptospira_phage(28.57%) integrase,transposase attL 3432589:3432603|attR 3498452:3498466
DBSCAN-SWA_10 3907742 : 3953037 44 Leptospira_phage(20.0%) protease,tRNA,integrase,head,transposase attL 3943970:3944029|attR 3951458:3952658
DBSCAN-SWA_11 4676049 : 4737108 56 Pseudomonas_phage(33.33%) tail,tRNA,protease,transposase NA
DBSCAN-SWA_12 5091702 : 5159348 58 Vibrio_phage(20.0%) tRNA,protease,transposase NA
DBSCAN-SWA_13 5262559 : 5295675 42 Pseudomonas_phage(61.54%) tail,tRNA,lysis,plate NA
DBSCAN-SWA_14 5687053 : 5735221 53 uncultured_Caudovirales_phage(33.33%) capsid,protease,tail,integrase,head attL 5700103:5700119|attR 5709657:5709673
DBSCAN-SWA_15 5756803 : 5827802 53 Paramecium_bursaria_Chlorella_virus(20.0%) protease,plate,transposase NA
DBSCAN-SWA_16 5939543 : 5989363 37 uncultured_Caudovirales_phage(57.14%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage