CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042805	Pseudomonas amygdali pv. tabaci str. ATCC 11528 plasmid pTab1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP042804	Pseudomonas amygdali pv. tabaci str. ATCC 11528 chromosome, complete genome	4 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042804_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042804_1

853104-853268

Orphan

Consensus_repeat	Method
CTGAGTTCGGATTCCGAACTC	CRT
GACTGAGTTCGGATTCCGAACTCAG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP042804_1

>merge|NZ_CP042804|1|853104-853268|CRT,PILER-CR
ATGAGTTCGGAATCCGAACTGTGCCGTATGACGCTGATTTTAGACTGAGTTCGGATTCCGAACTCGGTCTGTCGAGATTCGCTTGCTCACTGATTTCACTGAGTTCGGATTCCGAACTCAGTGCCGGAGGCTCGCTTTCTTGCTGAGTTCGGATTCCGAACTCAG

>NZ_CP042804|1|1|853104-853266|CRT
ATGAGTTCGGAATCCGAACTG	TGCCGTATGACGCTGATTTTAGA
CTGAGTTCGGATTCCGAACTC	GGTCTGTCGAGATTCGCTTGCTCACTGATTTCA
CTGAGTTCGGATTCCGAACTC	AGTGCCGGAGGCTCGCTTTCTTG
CTGAGTTCGGATTCCGAACTC

>NZ_CP042804|1|1|853146-853268|PILER-CR
GACTGAGTTCGGATTCCGAACTCGGTCTGT	CGAGATTCGCTTGCTCACTGATTT
CACTGAGTTCGGATTCCGAACTCAGTGCCG	GAGGCTCGCTTTCTTGCTGA
GTTCGGATTCCGAACTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042804.1\|WP_147232459.1\|856519_856783_-\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
NZ_CP042804.1\|WP_122234767.1\|845250_846384_-\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP042804.1\|WP_004396423.1\|851223_852003_-\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP042804.1\|WP_004396435.1\|849727_849970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_147232460.1\|857761_859108_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP042804.1\|WP_147232456.1\|846588_846837_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_005782633.1\|860562_861423_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP042804.1\|WP_025991958.1\|856772_857018_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_004396429.1\|850173_850641_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|169261
NZ_CP042804.1\|WP_005783321.1\|857423_857765_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_020304254.1\|849464_849665_-\|CrpP-family-protein	unknown	unknown	gnl\|CDD\|225672
NZ_CP042804.1\|WP_147232503.1\|852151_852613_+\|mucin-17-like-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_010196143.1\|859107_859809_-\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP042804.1\|WP_005783325.1\|854762_856517_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
NZ_CP042804.1\|WP_005783334.1\|848891_849245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_010196147.1\|859805_860561_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370635
NZ_CP042804.1\|WP_005783322.1\|857014_857422_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_147232458.1\|850642_851227_-\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NZ_CP042804.1\|WP_147232457.1\|846936_848889_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350677
NZ_CP042804.1\|WP_005783327.1\|853988_854726_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591

Protein	Function_ID	Function_description	E-value
NZ_CP042804.1\|WP_147232459.1\|856519_856783_-\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	2.43594e-08
NZ_CP042804.1\|WP_122234767.1\|845250_846384_-\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	2.61943e-57
NZ_CP042804.1\|WP_004396423.1\|851223_852003_-\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	4.34986e-113
NZ_CP042804.1\|WP_005783327.1\|853988_854726_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	6.48824e-42
NZ_CP042804.1\|WP_147232460.1\|857761_859108_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP042804.1\|WP_005782633.1\|860562_861423_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.5187e-37
NZ_CP042804.1\|WP_004396429.1\|850173_850641_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|169261	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional.	2.74483e-68
NZ_CP042804.1\|WP_020304254.1\|849464_849665_-\|CrpP-family-protein	gnl\|CDD\|225672	COG3130, Rmf, Ribosome modulation factor [Translation, ribosomal structure and biogenesis].	0.0071242
NZ_CP042804.1\|WP_005783325.1\|854762_856517_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	2.63121e-147
NZ_CP042804.1\|WP_010196143.1\|859107_859809_-\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	4.26282e-08
NZ_CP042804.1\|WP_147232458.1\|850642_851227_-\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	6.79535e-68
NZ_CP042804.1\|WP_147232457.1\|846936_848889_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.97711e-42
NZ_CP042804.1\|WP_010196147.1\|859805_860561_-\|hypothetical-protein	gnl\|CDD\|370635	pfam09726, Macoilin, Macoilin family. The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.	0.00363746

>NZ_CP042804.1|WP_147232503.1|852151_852613_+|mucin-17-like-protein
MTGVRSDSSGITLVGAQSDSSGITLVGAQSDSSGITLVGAQSDSSGITLTGVRSDSSGITLTGVRSDSSGITLVGAQSDSSGITVIGAQSDSSGITLVGARSDSRGITLTGVRSDSSGITVVGAKSDSRGITQTGVQGDSSGVTVIAVMAAFS
>NZ_CP042804.1|WP_004396423.1|851223_852003_-|TIGR03761-family-integrating-conjugative-element-protein
MADNFQLNLGSLRSSVNLTLHTHHASRLWFGRQRTEGKPGMIGLSGFANILNRIKRGCEQDDPYSDWFLILIEEKIEASEQEMKDIDARLDEVMASLPPMLSIGQNLSVQPVTLPLFLSTPLAFKAVFLLTAYDELVRRILLASHVGLIDNNAKGQWLDEGAAILRRLFGLSQRWKFSGASRDDFAAKNARSEQAREMYASFGEIPQDILEGTRKSSFAPSAAATSTTTINDDDHEDGFEETITLGLPHQDMPDPESDK
>NZ_CP042804.1|WP_147232458.1|850642_851227_-|DUF3158-family-protein
MSSVTTNTAYQTQEGHSLQQGAFQPLQQDAFIGLQHAPFLKGLLKPFKGKGGMLQLAELCRSLEGDLNALAEDQVLAQANRHPYTLLPVRMVRQRTSAGTVFLRWQEMGTRQMGVNVWSNLLADPRTPESLLQDLHSMEQQRVALNMQISLVHTIGRQAAECAEKMAQADAVYSGRLQQISLSSGTTPHTPKES
>NZ_CP042804.1|WP_004396429.1|850173_850641_-|single-stranded-DNA-binding-protein
MGTSVDWEGNIGSVPEFKEFANGNKDPRRLLRLNVYFDNSIPKADGSGYEDRGGFWANVELWHKDAEHYANIYQKGMRVLIHGRAVMDTWTKDGEEVTALKVQASRVAILPARIEAVHLTQSQTQQAARAQQTQPARPAQNDHDALLDFDDDIPV
>NZ_CP042804.1|WP_004396435.1|849727_849970_-|hypothetical-protein
MSLNNFVTYVIRMPNDIAARTALTTELNEAVIRNGGELTGTSLEDEITLNELFEARMNDLDVQEARRAAQELATAEYLED
>NZ_CP042804.1|WP_020304254.1|849464_849665_-|CrpP-family-protein
MRTAPTATHETSDRRRFNNPHHAVMLAGAEAALKGIPLHECPYRHPAMRASWLKGFAQEQQQSFNF
>NZ_CP042804.1|WP_005783334.1|848891_849245_-|hypothetical-protein
MDSRVVSDIGPSWTKLQPEVQLWASRMADLARSKMDGSISAILRPYRHLSGEYLSVEMVGQKSGSMSVTIAVGAVRTNFGFDDLERTCFDFSDMTEALTMVGLLLRDTDAHVSLGSF
>NZ_CP042804.1|WP_147232457.1|846936_848889_-|DEAD/DEAH-box-helicase
MAASRLMNKRPVLLRKAVFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVPKDKLLDDLDVLYRELAELADGQHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEGGVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTAELVRSNLILELGLAEEQFEILDTLQELLADGSVKAVSEVTSIRLGGHSPESTKSEEEISDSGIYLASVPSIKNTELTSAEIDEALQGFSLMDHQPAGIRHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFPQAQIAMQTFDANAGWIVVNYERLGDFVMHANRFAVMVIDEAHRLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGHPIGQLPLNEFCERFAGSPEFRKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQVERDEYNQIMRSDQHRFARLGALRQLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRVVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEESSKKALAEIL
>NZ_CP042804.1|WP_147232456.1|846588_846837_-|hypothetical-protein
MLKSIVSNLEPVLLRISKVGNGCGFLLIVGYVLLSMVSLMQDPNFDQPRLAQEFAPLIVCAFGAGTLSMALQMMIRTNARSS
>NZ_CP042804.1|WP_122234767.1|845250_846384_-|pilus-assembly-protein-PilL
MIRQLSTLSILALFAGCTSVADKPVGPAFDSSQNPELLSPDLYSSGAKSGQEPMVRYGRYALVNTAPEAEQRDLMAQIIDVSIPANMHPSVQDAMQYVVSRSGYTLCPPSTGHVNILFTRPLPAAQYKLGPMSLRNTLQVLAGPAWQVKVNEVTRGVCFVLRPGYQLPETSKPMALAQPAQPASTGSTSVASTSPAVTVVTAPATGTPFSKDTSPAGQPQTTVVTQAKAQPAASISTPAKEGTPTQQKPTPVSAAPAKATSQTTVTKSIASTSQAPTKPEPAAKPVATVAPQQTWNAPVGSTLRKSVEDWAKRAGWQVIWVPEDLDYPIEAPLSFTGSFTSAVRQIFPLYDNAKRSFVVDGNEGNGQQVLHVSERKK
>NZ_CP042804.1|WP_005783327.1|853988_854726_-|DUF2857-domain-containing-protein
MSKKHNPLNEAMVAQILHHLRNGEVRRCLDMGLDPEILALLQQPSSQSVLLNSAVIWCRVAVDPDMVKRLLANKERTDQENRIVQRALRLGATTPMLQEFFGMSPQEVSLQRVLVGVPGRPGRFRDIPDDAPLWHRFVQLMEEYSVDHTDGVALLDIAMMLTEEINVPPEEPHSLPTDQITLGLVWNKIQGWLAQDLYPNGKKRKSASLVMLGESRQQSTANANRSRPGQSQANKSVGKVEGDRM
>NZ_CP042804.1|WP_005783325.1|854762_856517_-|chromosome-partitioning-protein-ParB
MASKLTADQISGKLLQGSFSRSGPTVDQLPDPIVDTPMVLTLDEMKAFEQNPRTVTNAKYKEIKDSIRQRGLDHRPSVTRRPGEIKFTINNGGNTRLQILRELYSETGEDRFYRHNVLFRPWDSARGEIIALTGHLSENDLRGSLMFIERAVGIENARAIYEKEAGEPISQRELVRKLSADGYPVSQSHISKMQDTVRCLLPVIPSALYSGLGKPQIERLLSLRKAAGQTWLTHTEGKEHIPDFEGLFQDVLSLFDGDASEFVYERVQDELISHMQSGTGLSYEQLLLTLSENQNQARRSSVIDTPVSLTPAQQPRPDGLPPEGDDPGSDQQQEPGIQPPPPESGKNKGKQDVSPKSSKNEADKPPPHAPELSEEERAARLAGHIVSPISTTERVEDVKRQLAALDGENLPDFKTNALISIPVQAGGLHPISDVWYIERILDQPDELRPVIAQLAREIAHLSGINPDSVIDVPGGLGFLCQDPPEDVDLSDLANNVLTLLQSISGIYAIALIKESPEQPLDVSEFQFTAALAQLLLGSPRYEDREAILEGRLDDTCLVKLFRLIRLGRRLVELEMGSVSVVQTP
>NZ_CP042804.1|WP_147232459.1|856519_856783_-|Arc-family-DNA-binding-protein
MLSNEAVNIREDDKDEKFVIRLPIGMRGRVRGAAKANHRSMNSEIISRLDATLRQDQEIARLKAVIDVLLKAETSTGNVVQLPEVGQ
>NZ_CP042804.1|WP_025991958.1|856772_857018_-|hypothetical-protein
MSNTSTSLRGRKKSLQDLADFAISQGWAVHRTHGGHIKFTKGGCSPIFTSFTPSDHRAGLNARAQLRRAQNPSQIGDRHVE
>NZ_CP042804.1|WP_005783322.1|857014_857422_-|hypothetical-protein
MQLYHTTEEDLPVQSDREKERLRSDIEKAMADYLSRGGAINQVEASQRSNDSSFIINSEKTAQLKADTSAHGRKKTNDLTDTELARLLKAHCTAGASLASAASALNQTRKRCEAIARRYQIPFRSAAFTKARARS
>NZ_CP042804.1|WP_005783321.1|857423_857765_-|hypothetical-protein
MSARNKPLCITHECRTCGHHHPFTAVMPAGNRAPECPSCHSGEVVELELVHPQWSVVASSKAPDSKEYTVVFRMSPSTSRKAFMTKLTDTFVDHEVEILEIQSGDKLGGSGGQ
>NZ_CP042804.1|WP_147232460.1|857761_859108_-|replicative-DNA-helicase
MDISHMSPPHSVEAEQAVLGGLMLDNESWDLIADRIKADDFYRAEHRLIFQSIAGLAESNRPFDVVTVSDSIPAIDAAGGLAYLSELAKNTPSVANIKAYAETVSNRAHLRRLIAHGYGCTREASDPQADATVVQDVLEQQLFALGQGRQTSDFVDVNQMLMQVVDKIDHRFNAGESVVGVPTGIDDLDELTGGLRPADLIILAARPSMGKTSLALNFVDPALQKKPESTVQIYSIEMPAEAIMFRLISILGHLNLEKLIRGQLDDEDWPKLSMAVAKINSYGNRLVIDDQADLTPSSIRARARRGARRFGEPSLILIDYLQLMKCPGKENRANEISEISRSLKALAKEFDCPVVALSQLNRELERRPNKRPINADLRDSGALEQDADLILFVYRDEVYNADTDHKGIAELILGKHRNGPLGTVRTAFIAQHTRFENLSAAAWQGARS
>NZ_CP042804.1|WP_010196143.1|859107_859809_-|DUF2786-domain-containing-protein
MSIDRQRIIDKVIKCFALARSAGASPNEAETALRQGRKLMEQYNLEELEVDAHLACEASATAGTKRAPASWLHSLASTCASAFDCDCIAYQARPGDWHFKFIGLGVSPDLASYAYSALHLQLVSARRQHVSQLKRCNPTTKRRRGRIFAEAWINAVATNVYKFAGRQNAEAQQAITAYLSLHHPTVVEKELEPTSVKGHDLKSQHQGWTQGSRAALHRGVDQHSQSPARIGRA
>NZ_CP042804.1|WP_010196147.1|859805_860561_-|hypothetical-protein
MGTPHLTDASGITPELMRKMNEQYNSSQLRAAQTKLTNTSRELRNLSSGHQMGRGLISRLGDYLSVEQRELLTQAAQLLESVNSHVEHAKEKRVRDEKAAKRRQDARNARAKLLIAATYPLPTESLDQKLELLKTALLFNRIGAYDSFYSAVELNSEIRSTLLTPFSRLIGWGSLTAYRVSCLGSLRIRLVEALTNDISYDDGSEVEDRLAALQSKVREENAKAQLTSDEHETLRLWKEALALEAVPEVRP
>NZ_CP042804.1|WP_005782633.1|860562_861423_-|ParA-family-protein
MYITSLLSTKGGVGKTTLAANIGGFCADAGLRVLLIDMDPVQPSLSSYYPMAQEVSGGIFDLIAHNLTDPERIISRTSIPNLSLILSNDPNNQLISLLLQAADGRLRLASLLKAFEGHFDLILIDTQGARSVMLEMVVLASDLAVSPLPPNMLSAREFNRGTLQMLDGLRPYSRLGLHVPQIKVVVNCLDQTVDARQIHDAIRVTFADSKEIEVLQSTVPASVVFRQASTSGMSAHRIEYKQPSNRRAPSALQIIRELATEVFPQWNDLFEAMTESAVAKIVKEDR

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Crispr_ID: NZ_CP042804_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042804_2

923674-923785

Orphan

Consensus_repeat	Method
CGACGCTCTGCATCGCAAAGAGGACGCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042804_2

>merge|NZ_CP042804|2|923674-923785|CRISPRCasFinder
CGACGCTCTGCATCGCAAAGAGGACGCAGAAGAGCGATAGTTGATGATCGTTCCGCACGCTCCAGCGTGGGAATGCAGTTCTCGACGCTCTGCGTCGCAAAGAGGACGCAGA

>NZ_CP042804|2|1|923674-923785|CRISPRCasFinder
CGACGCTCTGCATCGCAAAGAGGACGCAGA	AGAGCGATAGTTGATGATCGTTCCGCACGCTCCAGCGTGGGAATGCAGTTCT
CGACGCTCTGCGTCGCAAAGAGGACGCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042804.1\|WP_005782721.1\|923934_925176_-\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|378410
NZ_CP042804.1\|WP_011167740.1\|925236_925971_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP042804.1\|WP_010196269.1\|916161_917256_+\|cysteine-protease-StiP-family-protein	unknown	unknown	gnl\|CDD\|378594
NZ_CP042804.1\|WP_005745508.1\|936453_937395_+\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP042804.1\|WP_005782705.1\|915410_916169_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319822
NZ_CP042804.1\|WP_002552038.1\|922373_922949_+\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP042804.1\|WP_010196293.1\|927570_929823_+\|DUF1631-domain-containing-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP042804.1\|WP_057404270.1\|919590_920784_+\|tellurium-resistance-protein-TerA	unknown	unknown	gnl\|CDD\|226595
NZ_CP042804.1\|WP_002552034.1\|919000_919594_+\|tellurium-resistance-protein-TerZ	unknown	unknown	gnl\|CDD\|225192
NZ_CP042804.1\|WP_004663703.1\|921311_922346_+\|TerC/Alx-family-metal-homeostasis-membrane-protein	unknown	unknown	gnl\|CDD\|274743
NZ_CP042804.1\|WP_004658638.1\|930004_930553_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP042804.1\|WP_004658635.1\|932236_933232_-\|catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
NZ_CP042804.1\|WP_002552042.1\|926370_927219_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|180230
NZ_CP042804.1\|WP_080725953.1\|931439_932234_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NZ_CP042804.1\|WP_002552036.1\|920835_921285_+\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|226316
NZ_CP042804.1\|WP_002552039.1\|922986_923565_+\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NZ_CP042804.1\|WP_005782713.1\|918206_918953_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP042804.1\|WP_046832870.1\|933586_936454_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP042804.1\|WP_010196296.1\|930568_931405_+\|regulatory-signaling-modulator-protein-AmpE	unknown	unknown	gnl\|CDD\|226248
NZ_CP042804.1\|WP_005782711.1\|917255_918206_+\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	unknown	unknown	gnl\|CDD\|379744

Protein	Function_ID	Function_description	E-value
NZ_CP042804.1\|WP_005782721.1\|923934_925176_-\|tellurium-resistance-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	6.46751e-111
NZ_CP042804.1\|WP_011167740.1\|925236_925971_-\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.49537e-81
NZ_CP042804.1\|WP_010196269.1\|916161_917256_+\|cysteine-protease-StiP-family-protein	gnl\|CDD\|378594	pfam11202, PRTase_1, Phosphoribosyl transferase (PRTase). This PRTase family is fused to a C-terminal RNA binding Pelota domain, pfam01248. These genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	9.65685e-119
NZ_CP042804.1\|WP_005745508.1\|936453_937395_+\|1-phosphofructokinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	1.67341e-119
NZ_CP042804.1\|WP_005782705.1\|915410_916169_+\|hypothetical-protein	gnl\|CDD\|319822	cd07520, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.12144e-54
NZ_CP042804.1\|WP_002552038.1\|922373_922949_+\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	6.4952e-119
NZ_CP042804.1\|WP_010196293.1\|927570_929823_+\|DUF1631-domain-containing-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_CP042804.1\|WP_057404270.1\|919590_920784_+\|tellurium-resistance-protein-TerA	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	1.63165e-94
NZ_CP042804.1\|WP_002552034.1\|919000_919594_+\|tellurium-resistance-protein-TerZ	gnl\|CDD\|225192	COG2310, TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms].	2.88516e-64
NZ_CP042804.1\|WP_004663703.1\|921311_922346_+\|TerC/Alx-family-metal-homeostasis-membrane-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	1.81338e-114
NZ_CP042804.1\|WP_004658638.1\|930004_930553_+\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	1.59788e-129
NZ_CP042804.1\|WP_004658635.1\|932236_933232_-\|catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
NZ_CP042804.1\|WP_002552042.1\|926370_927219_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|180230	PRK05742, PRK05742, carboxylating nicotinate-nucleotide diphosphorylase.	0
NZ_CP042804.1\|WP_080725953.1\|931439_932234_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	1.04466e-98
NZ_CP042804.1\|WP_002552036.1\|920835_921285_+\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|226316	COG3793, TerB, Tellurite resistance protein [Inorganic ion transport and metabolism].	1.51385e-36
NZ_CP042804.1\|WP_002552039.1\|922986_923565_+\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	2.30162e-111
NZ_CP042804.1\|WP_005782713.1\|918206_918953_+\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.66096e-40
NZ_CP042804.1\|WP_046832870.1\|933586_936454_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP042804.1\|WP_010196296.1\|930568_931405_+\|regulatory-signaling-modulator-protein-AmpE	gnl\|CDD\|226248	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms].	8.52132e-54
NZ_CP042804.1\|WP_005782711.1\|917255_918206_+\|HpcH/HpaI-aldolase/citrate-lyase-family-protein	gnl\|CDD\|379744	pfam15617, C-C_Bond_Lyase, C-C_Bond_Lyase of the TIM-Barrel fold. This family of TIM-Barrel fold C-C bond lyase is related to citrate-lyase. These genes are found in the biosynthetic operon, with other enzymatic domains, associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	1.22291e-133

>NZ_CP042804.1|WP_002552039.1|922986_923565_+|TerD-family-protein
MAVSLSKGGNVSLSKEAPGLTEITVGLGWDPRVTDGTEFDLDASVFIVGESGKVLDDNSFIFYNNKKSADGSVEHLGDNRSGAGDGDDESVNVKLTGLAAAVKKLVFAVTIHSAEERKQSFGQVSNAYIRVVNKADGKEIARYDLSEDASTETAMIFGELYRNGDEFKFKAIGQGFAGGLKPLAEAHGVAIG
>NZ_CP042804.1|WP_002552038.1|922373_922949_+|TerD-family-protein
MALTLQKGGNLSLSKTDPTLTNVLIGLGWDPRATDGQEFDLDASAFLLGANGKVRSEADFIFYNQLKSADGSVEHTGDNRTGAGDGDDEVLKVNLTSVPADVDKIVFVVTIHDADSRKQNFGQVGGSFIRVLNEKSSSEIVRYDLAEDASTETAMIFAELYRNNGEWKFRAVGSGFAGGLKAVANSFGMNF
>NZ_CP042804.1|WP_004663703.1|921311_922346_+|TerC/Alx-family-metal-homeostasis-membrane-protein
MESTSLGFPPLTMAVFVGLAITAMAIDMFSHRGNKPITLAQASAWSIFWVAISLAFAGFLYVQHGSEVATLFVTGYALEKVLSVDNLFVFMALFSWFKIPDGLRHRVLYWGIIGAIVFRGIFVAIGTGLLALGPWVEVVFAVIVAWTAIMMLRAGDDDDEEVDYSQHMAYRFAKKLFPVWPKLHGSNFFVRRSVLEEEVKKPENAGITLAAKGALFATPLFLCLVVAEISDVLFAFDSVPAIIAVSREPLIVFSAMLFAILGLRTLYFVLEALKRYLVHLEKAVIALLFFIAIKLGLNATNHLFHHGYEISANTSLLVVVVVLIIGIVASLLFPGKEEPAEEKA
>NZ_CP042804.1|WP_002552036.1|920835_921285_+|tellurite-resistance-TerB-family-protein
MLDWLKTNATAARDKLASEVSKFKNREFMEAVVSGCALVSAADGDISSSEKQKMAGFIQNSQELKVFDMKEVIQGFQEACSKFEFDFEIGRAEALKTIGKIKKKEDAARLLVRVCCAIGGADGSFDEKEREVCRTICRELGLNPSDFDL
>NZ_CP042804.1|WP_057404270.1|919590_920784_+|tellurium-resistance-protein-TerA
MTQLVPGANAPVAAGPLTVEVSYSPLADADIDVSAFLLTASGKVRGDQDMCFYGQKSVNGGAVQQTEASAGRAVFSLDPSRLDSVIEKVALTATIYENKASFGSVSRLALSITGGIEADIPTSGMKETALILGEFYLRQGAWKFRCVAQGFAGGLEPLAKNFGVEVAAPQDQPAPAPAPAPAPAPAPAPAPKSTVSLSKITLDKTRASISLEKSSAGFGEIRVNLNWNRRSDSKGGGFFSMKKSNAIDLDVGCLFELQDGLKGAVQALGNSFGSLNTEPFIKLMGDDRTGSISDGEWLHINGAHWSKIRRILVYAFIYEGAPNWKETDGVVTIHAPGQPPIEVRLNEEGGRQGMCAIALLENDNGAVKVTRRVDFHNGHSNMDKAYGWGMRWAAGSK
>NZ_CP042804.1|WP_002552034.1|919000_919594_+|tellurium-resistance-protein-TerZ
MALTLAKNQTISLEKTAGTGLKKVSMGLGWDPEKASGFFGKLLGGGGGDIDLDASCIMLDADKKPLDLVWFRQLQSRDGAIQHSGDNRTGEGAGDDETISVDLEKLPATVKYLVFTVNSFTGQNFEKVANAYCRIVDLGSRNELGRFDLSEKGQHTGVVMSYLARTPAGWDFTAVGQVTNGRTADDLVELAIGAVRA
>NZ_CP042804.1|WP_005782713.1|918206_918953_+|HAD-IB-family-hydrolase
MIEPDLETVEPDLEPVGPDLEIEVEQRLLAVFDFDGTITRHDSFVPFLKFAFGQRAFSVRMARLVLPSIGYLAKRVTRDELKGRLIKAFLSGVEVQWLQQKAEAFCQSHWNRLMRPAALESIAAEIEKGAIVTLCSASPAMVLQPFADRLKVELIGTNLEVIDGKLTGLIEGSNCRCDSKVARLESVYGPLTQFRVRAWGDTRGDHELLAAAQDAHWRLFHPTWRRGRYKGPVNAKLHNPDGKDGPTR
>NZ_CP042804.1|WP_005782711.1|917255_918206_+|HpcH/HpaI-aldolase/citrate-lyase-family-protein
MALFSPYALGATLYMPATRDDIVDVVFGEKIPELRSLVVCLEDAVALIDVDTALVNLRQVLTRIQDRGGRPANGPLLFVRPRDAAMARILNDWPLMAHVDGFVVPKLSLKSLTSWEQSVTNPALALMPTLETPEVFDPTAMVELGQALKASLYERIIALRIGGNDLMGCLGLRRNPAMTLYSTPMGYVIPMLAGVMGSQGFALTAPVFEQLATPDILEHELALDITNGLVGKTAIHPSQVNIIQNALRVSLEDMNSARMILNSVAPAVFKYNDAMCEPATHYKWATHIMERAKWHGVLSAPASIMDASIRLAEAVS
>NZ_CP042804.1|WP_010196269.1|916161_917256_+|cysteine-protease-StiP-family-protein
MSDPVHGLDTVGSGSYLYDDVHFLLRSVAMQTTSVVEKERLIQTRQKHYSEMISEESAPSAAHKALYERALSQNGLRMADDVQALAQALDRECTGAEIVLVSFVRAGLPLGVLLRRALIDLHREAHHYGISIVRDRGIDKVALEAIILAHGAQNIVFVDGWTGKGAISGEIRRSLAGDTRFPKEPRLVVLADPCGSAWLAASAEDWVIPSGILGATVSGLVSRSIWPTDGGLHGCVVYEQLQGHDVTQSFIEHIDSQRRQNSSTLTLTPWTLTQRAGLKYAASQVVDRLAERFDITNFNRIKPGIAEATRAVMRRVPDHVLVRNRADSDVQLLLHLTEKAGIPVEEVGDVLGPYRAVTIIRSLS
>NZ_CP042804.1|WP_005782705.1|915410_916169_+|hypothetical-protein
MSNDRPLIFVDLDDTLFQTARKTPANIEKHVATLDISGNANGYMTNVQKSFAHWLLAHSDVVPVTARSVEAYSRVKLPFTAGAICSHGGVMLDVMGRLDQDWNEQMKNTLASYQSRLHELSAATLAIGEELGFSLRGWVVEEAQLFHYVVTKHNESDDNVLSKVLAEVQARGLLDGMHIHGNGNNLAFLPEGLAKRYAVQEWLRRDKAINGERPVLGFGDSITDLGFMDECHWWATPARSQLAKMFVGAEHE
>NZ_CP042804.1|WP_005782721.1|923934_925176_-|tellurium-resistance-protein
MQITQGQRVPLSGLIQGSDLTLSIAIKSAQVIDYVCFGVDANGKLSDDRYMVFFNQPSSPCNSVKQVNGGDFQLSLAGLPASIERLVFTASIDGAGTMSEIQASHFSIHSQGREVARGEFSGATFTAEKAIMVADIYRKNGEWRIASNLQGYNAGLDALVMHFGGEVADAPAPAPAAPPRISLEKKIADAAPQLISLAKKAQVSLEKARLTDTKARVGLVLDASGSMNPQYTRGHVQEVVDRLIPLAVHFDDDGALDCWAFGAKPQQLNAVTLSNFQNFIRTDHGGWKDWELGARINDEPKAMRMVIDYYKKSGDKTPVYILFISDGGVHQDREITRLMTEAAKLPIFWQFVGLGGRGYGILEKLDDLGGRVVDNCNFFALDRLDEIPEEKLYDLLMEEFPDWLKAAKGAGIL
>NZ_CP042804.1|WP_011167740.1|925236_925971_-|TIGR00266-family-protein
MDFKLYGAETQFVELELDPGESAVAEAGAMMYKTCDVQMETIFGDGSNQSSGLLGSLFGAGKRMLTGESLFTTVFSQQGSGKGRVAFAAPYPGTILPLNLRDFGGKLICQKDSFLAGAKGVSIGIQFQKKILTGLFGGEGFILQKLEGDGWVFVHMGGTVRKIELAAGESLDVDTGCLAAMTQTVDYDIRMVGGGIKSMLFGGEGVFFARLTGPGTVWLQSLPFSRLAGRMLAAGPAGVGRSER
>NZ_CP042804.1|WP_002552042.1|926370_927219_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MPNLRIADLTAEIEANVRRALLEDVGSGDITAQLIPAERLAKATIISRDAAVIAGTAWVDTVFRQLDPRVAVHWQVTDGDRVSPNQALFHLEGPARSLLTGERSALNFLQMLSGVATRAQYFADMVSGTQVKLLDTRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENHIAACGGIAQAVEAAHRIAPGKPVEVEVESLSELKQALDAGADIIMLDELSLDDMREAVRLTAGRARLEASGGINDDTLRVIAETGVDYISIGAMTKDVKAVDLSMRLSL
>NZ_CP042804.1|WP_010196293.1|927570_929823_+|DUF1631-domain-containing-protein
MPNDEKVVPLSKLLPAQGAGTPLARLPVVLLQVRDKAAQQLKDALQALFDNADDTLFEMADRARSNTDQNIFFEAMRDLRLKRKSIERGFLDKFYESFLALGQYQIHEPVLPTAVSFDKLALVHNDDLEKTVAVDAMVSKVMSRDSLALGQLTARLNVLIPQTIAEDANPLGPAMLCRFFLDAGRSLGVEIKVKLIILKLFEKYVLANTDHLYSEANQLLIATGVLPDMKALPARRSSDRAAPRNRVSEMSDPGLNEAADKLDKGVQEVFSALQELLLQVRGNLAPRHEPNAEVRPISSRDLLRLLSHLQQYVPSQDTADDFDLRNQLEQLLTRVNVKTGKSRIVGGGDEDVINLIAMLFEFILDDRNLTPSLRALIGRLQIPMLKVAVLDKSFFSRGSHPARRLLNEIATAALGWGSRDDYQRDSLYQRVEQIVQRLLNDFVDDPAIFSELLADFLAFTSDERRRSELLEQRTRDAEEGRARAELARQQVQHELNQRLLGRTLPEVVVRLLQEAWSKVLLLTCLKHGEESSEWQAGLATMDELIWSVEQHDDPQALQRLLDLVPGLLKSLRDGLTSAAFDPFATSEFFSQLESLHVQAFQHFSRLQEGGDAQGGETSLTGAQLVESPPMMAVVEEIVLVTPEERMLNEPTVQLPADDAGLQMVDKLRVGCWVEIQEDEEHKLRCKLTAIVEPTGRYVFVNRTGMKVLEKTRTGLAIEFRRGAVRILDDALLFDRALESVISNLRKLKGA
>NZ_CP042804.1|WP_004658638.1|930004_930553_+|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MQLDSASGWCDGVQHCPSPNFNARPEGEISLLVIHNISLPPAQFKTGKVQAFFQNQLDSTEHPYFVGIADLRVSAHFLIERDGEVIQFVSCLDRAWHAGVSSFQGREGCNDFSVGIELEGTDEQPFTEAQYDALIELTRQLRRAFVAITPERICGHSDIAPGRKTDPGPFFDWARFQAALLD
>NZ_CP042804.1|WP_010196296.1|930568_931405_+|regulatory-signaling-modulator-protein-AmpE
MSFLVLLLAVLVEKFSALRQRVQRDGPWLKELARLEASPRTATRPWVMLALLVLVPVLLLQLALTIIGSVAYGWLVLPIHLLVLIYSLGRVDLIAVLGPFRDACRRGDTQAAVHVAGRDMGVQADNGEQLLHGVQGYMLWQAFQSFFAVIFWYFVLGPVAALAYRLLALAAEQGTTPALVERAGQLRHAFEWVPVRLLAASFALVGNFVAVSRVMLHELLNWNISAAQLITRVGCAASEVPPPVIGPQGVTGLDMLWELLVRAAIVWYAGFALWTLLR
>NZ_CP042804.1|WP_080725953.1|931439_932234_-|TatD-family-hydrolase
MTLIDTHTHLDFADFDADRAQVLDSCLSLGVQRIVVLGVYQRNWQRLWELTEANPALHAAFGLHPVYIDEHRTEHLNELADWLTRLQGHPQLCAVGEIGLDYYVEHPDKPRQQELFEAQLQLASDFNLPALLHVRRSHADVIAALKRHKLKRSGIVHAFAGSREEAREYIKLGFKLGLGGAATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYTRNSPQHLPDICQALADLMKIPSERLAQASTENACELFGWPRTASA
>NZ_CP042804.1|WP_004658635.1|932236_933232_-|catabolite-repressor/activator
MKLSDIARLAGVSVTTASYVINGKAEQQRISPATVERVKAVVEQHDFRPNPQAAGLRSRHSKTLGFILPDLENPSYARIAKLLEQGARSLGYQLLIASSDDDPVSELQLLQLFRARRCDALLVASCLPPDDDSYRDLQLKGMPIIAIDREMNPEFFCSVVSDDHDASLQLTRSLLQTRPRHIALIGARPELSISRARAAGFEHALDGFTGATIIEHGEAFSRQCGQRLMTEMLQREGHFPDALITTSYVLLQGVFDVLQSQALQSTQLHLGTFGDTQLLDFLPLPVNAMAQQHQLIADTALRLALAAIEKDTYQPGVHAIARAFKQRIHEV
>NZ_CP042804.1|WP_046832870.1|933586_936454_+|phosphoenolpyruvate--protein-phosphotransferase
MLELTLEQISMARSAVDKTAALKLIADHLVADGLVAEGYLTGLMSREQQGSTFLGQGIAIPHGTPETRDLVVTTGVRLMQFPEGVDWGDGQMVYLAIGIAAKSDEHLRLLQLLTRALGEEDLGQALREARTPEDLLKLLQGAPQELALDAQMISLGVSADDFEELVWRGARLLRKADCVSNGFAAVLQQVEALSLGDGLWWLHSEQTVKRPGLAFVTPDKPIRYLGQPLTGLFCLASLGEAHQALLERLCLLLIEGRGHELGHATNSRVVLEALGGEVPAEWPTQRVQLANAHGLHARPAKILAQLAKEFDGEIRMRVLESGESAVSAKSLSKLLSLGARRGQTLEFIAEPTIANDALPALIAAVEQGLGEEVEPLPVASEAQAAPAPAAVAKPLNAPAAGSVLQAVPASPGIAIGPAHVQVLQSFDYPQQGESVAAERERLHKAIGEVRSDIENLIQRSKSKAIREIFITHQEMLEDPELTNEVEARLNNDESAAAAWAMVIETAAVQQEQLQDALLAERAADLRDVGRRVLAQICGVETVAAPDEPYILVMDEVGPSDVARLDPAQVAGILTARGGATAHSAIVARALGIPALVGAGDEVLLFKPGTVLLLDSQRGRLTVAPDEATLQRAAQDRDAREERLKAAAAARMEPAVTRDGHAVEVFANIGDSTGTPAAVEQGAEGVGLLRTELLFMAHSQAPDEATQEAEYRRVLTDLGGRPLVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLTLQRPDVMESQLRALLRAADSGPLRIMFPMIGTLEEWRQAREMTERLREEIPVSDLQLGIMIEVPSAALIAPVLAKEVDFFSIGTNDLTQYTMAIDRGHPTLSAQADGLHPSVLQLIDMTVRAAHANGKWVGVCGELAADPLAVPILVGLGVDELSVSARSIGEVKACVRELTLSSAQQLAQNALTAGSAAEVRALVEAV
>NZ_CP042804.1|WP_005745508.1|936453_937395_+|1-phosphofructokinase
MAKILTLTMNPALDLTVQLGQLELGQVNRSNAMLTHAAGKGLNVAQVLADLGHDLTVAGFLGVDNQQAFEALFERRNFVDEFVRVPGETRSNIKLAEGSGRITDLNGPGPQVSEEAQQALFARVQQIASGFDVVVVAGSLPRGVTPEWLHKLLVMLKDLGLKVALDSSGLALRAGLTAGPWLIKPNTEELADALDAPIISIAAQAEVAARLHTQGIEHVVISQGSEGVHWFSPSVALHSLPPKVTVASTVGAGDSLLAGMVHGLITGQEPQKTLRTATAIAAMAVTQIGFGITDAAQLKRLEGGVTVRSLSEQ

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Crispr_ID: NZ_CP042804_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042804_3

3990590-3990906

Orphan

Consensus_repeat	Method
AGAGCGGACGCAGAGCGCCCGGAACGGCATGCGA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP042804_3

>merge|NZ_CP042804|3|3990590-3990906|PILER-CR
AGAGCGGACGCAGAGCGTCCAGAACGGCATGCGACGCGGAGCGTCGCACGATAGTTGAGATGATCGCTCCTCATGCTCCGGCGTGGGAATCGCACAGAGCGGACGCAGAGCGCCCGGAACGGCATGCGACGCGGAGCGTCGCACGATAGTTGAGATGATCGCTCCTCACGCTCTGCGTGGGAATCGCACAGAGCGGACGCAGAGCGCCCGGAACGGCATGCGACGCGGAGCGTCGCACGATAGTTGAGATGATCGCTCCTCACGCTCTGCGTGGGAATCGCACAGAGCGGACGCAGAGCGCCCGGAACGGCTTGCAA

>NZ_CP042804|3|2|3990590-3990906|PILER-CR
AGAGCGGACGCAGAGCGTCCAGAACGGCATGCGA	CGCGGAGCGTCGCACGATAGTTGAGATGATCGCTCCTCATGCTCCGGCGTGGGAATCGCAC
AGAGCGGACGCAGAGCGCCCGGAACGGCATGCGA	CGCGGAGCGTCGCACGATAGTTGAGATGATCGCTCCTCACGCTCTGCGTGGGAATCGCAC
AGAGCGGACGCAGAGCGCCCGGAACGGCATGCGA	CGCGGAGCGTCGCACGATAGTTGAGATGATCGCTCCTCACGCTCTGCGTGGGAATCGCAC
AGAGCGGACGCAGAGCGCCCGGAACGGCTTGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042804.1\|WP_003412391.1\|3986007_3986841_-\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP042804.1\|WP_002554269.1\|3983838_3984624_-\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|377318
NZ_CP042804.1\|WP_002554280.1\|3994513_3994972_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189
NZ_CP042804.1\|WP_010198142.1\|3978680_3979568_-\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP042804.1\|WP_082303361.1\|3996903_3997233_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_002554273.1\|3986956_3988285_-\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|235570
NZ_CP042804.1\|WP_002554267.1\|3980314_3981478_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP042804.1\|WP_002554281.1\|3995033_3996002_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP042804.1\|WP_002554271.1\|3985270_3986011_-\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP042804.1\|WP_002554274.1\|3988296_3990426_-\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP042804.1\|WP_005780458.1\|3981528_3983805_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP042804.1\|WP_002554282.1\|3996011_3996512_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP042804.1\|WP_002554277.1\|3993025_3993295_-\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP042804.1\|WP_002554276.1\|3992233_3993019_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP042804.1\|WP_002554278.1\|3993320_3994073_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP042804.1\|WP_002554266.1\|3979574_3980315_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP042804.1\|WP_005731570.1\|3997289_3998693_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|225686
NZ_CP042804.1\|WP_002554275.1\|3991095_3992232_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP042804.1\|WP_002554270.1\|3984643_3985030_-\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|381150
NZ_CP042804.1\|WP_004664467.1\|3994072_3994513_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|225731

Protein	Function_ID	Function_description	E-value
NZ_CP042804.1\|WP_003412391.1\|3986007_3986841_-\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	8.53755e-120
NZ_CP042804.1\|WP_002554269.1\|3983838_3984624_-\|protein-phosphatase-CheZ	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	6.67528e-96
NZ_CP042804.1\|WP_002554280.1\|3994513_3994972_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	3.55906e-95
NZ_CP042804.1\|WP_010198142.1\|3978680_3979568_-\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	1.01556e-173
NZ_CP042804.1\|WP_002554273.1\|3986956_3988285_-\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|235570	PRK05703, flhF, flagellar biosynthesis protein FlhF.	0
NZ_CP042804.1\|WP_002554267.1\|3980314_3981478_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP042804.1\|WP_002554281.1\|3995033_3996002_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	1.87298e-165
NZ_CP042804.1\|WP_002554271.1\|3985270_3986011_-\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	2.41676e-130
NZ_CP042804.1\|WP_002554274.1\|3988296_3990426_-\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP042804.1\|WP_005780458.1\|3981528_3983805_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP042804.1\|WP_002554282.1\|3996011_3996512_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	6.24107e-78
NZ_CP042804.1\|WP_002554277.1\|3993025_3993295_-\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	2.59222e-30
NZ_CP042804.1\|WP_002554276.1\|3992233_3993019_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	7.07062e-78
NZ_CP042804.1\|WP_002554278.1\|3993320_3994073_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	9.21072e-125
NZ_CP042804.1\|WP_002554266.1\|3979574_3980315_-\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	5.64099e-161
NZ_CP042804.1\|WP_005731570.1\|3997289_3998693_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|225686	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion].	3.59161e-22
NZ_CP042804.1\|WP_002554275.1\|3991095_3992232_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP042804.1\|WP_002554270.1\|3984643_3985030_-\|chemotaxis-protein-CheY	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.71348e-72
NZ_CP042804.1\|WP_004664467.1\|3994072_3994513_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|225731	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion].	6.06518e-24

>NZ_CP042804.1|WP_002554274.1|3988296_3990426_-|flagellar-biosynthesis-protein-FlhA
MDRSQIFSSARSNITGLGRGQLGVPLLLLVMMAMMMLPMPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFSVFPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVITKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPEAKRRRAEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMLVGILQHNMTFADAGRVYTLLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEEMGKLINRQMFASPKALAVSAAIMIVMGLVPGMPHFSFISLGLVAAGGAYLLWKKENQVKVEALAEVQRQQDLLPSPTRVQDAKELGWDDVTPIDIIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQELGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITARDPAFGLEAVWIEISQRSQAQSLGYTVVDASTVVATHLNQILYKHSHELIGHEEVQQLMQLLAKSSPKLAEELVPGVLSLSSLLNVLQALLAEHVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLSRAIVQSIVGVEPELPVITLEPRLEQILLNSLQKAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGLPVILLVAGPVRAMLSRFGRLAVPNMHVLAYQEIPDNKQVTIVATVGPNG
>NZ_CP042804.1|WP_002554273.1|3986956_3988285_-|flagellar-biosynthesis-protein-FlhF
MQVKRFFAADMRQAMKLVRDELGAEAAIIGNRRIAGGVELTAALDYKLSALAPRVPNMELEDELRKTQSRIVSAQAELNNRSDSDASINLQLFSGKPVSAVDTHIEPTLEEPPRPFAYTPPAPAEPAVGQRAYDSMRSELNGLRELLEVQLGSLAWNQLQGSRPQQANLWRRLQRVGLSGPLSRDLLSMIPEIDEPRQAWRMLLAHLARMIAVPDIEPLEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHVDPGQSLVQALEPLLRKRVVLIDTAGLQASDPALRMQLESLAGRGIKSRNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPDDLHTPRRHQLVSRAVSVQMQDEPSEEAMADMFADLYHTPGKRVG
>NZ_CP042804.1|WP_003412391.1|3986007_3986841_-|MinD/ParA-family-protein
MGSMHPVQVIAVTGGKGGVGKTNVSVNLSLALAELGRRVMLLDADLGLANVDVLLGLTPKRTLADVIEGRCELRDVLLQGPGGVRIVPAASGTQSMVHLSPAQHAGLIQAFSEIGDNLDVLVIDTAAGIGESVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDYGMNRFRVLANMAQSPQEGRNLFAKLTKVTDRFLDVALQYVGAVPYDECVRKAVQKQRAVYEAFPRSKCALAFKAIAQKVDTWPLPANPRGHLEFFVERLVHQTSAGPVQ
>NZ_CP042804.1|WP_002554271.1|3985270_3986011_-|RNA-polymerase-sigma-factor-FliA
MTASGYQMYSKASRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDERFQAALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEWRAR
>NZ_CP042804.1|WP_002554270.1|3984643_3985030_-|chemotaxis-protein-CheY
MDKNMKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGAFDFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKIFERVNS
>NZ_CP042804.1|WP_002554269.1|3983838_3984624_-|protein-phosphatase-CheZ
MDNNDSMADFESTLKRHAQELVTSLEKGRFGDAVQLIHELNQTRDRGLYQEVGKLTRELHSAIVNFHIDPHMPQAEEVSQITDATERLSYVVRLTENAANRTMDLVEESTPLMSGLSSDAKALSDDWGRFMRREIGAEEFRELAKRVDGFLTRTEQEADRVSGHLNDILLAQDYQDLTGQVIKRVTQLVTEVESNLLKLVLMASHVDRFAGIEHDEESILAEKDPKKHLAKGEGPQIHADKREDVVSGQDDVDDLLSSLGF
>NZ_CP042804.1|WP_005780458.1|3981528_3983805_-|chemotaxis-protein-CheA
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLHELVECCHIAENVFDILRKGERRVDSELMDVVLEALDTVNSMFGQVRERTDVTAATPELLAALSRLAEPQSADEVAAPEPEPVVEAEAPAPVAEQAASDDITDDEFEQLLDSLHGTSPVSAAPSAAPAVAPAGDEITDQEFESLLDQLHGKGKFAADAVAAPAPAPAAQSKGAAPAGDEITDDEFEALLDQLHGKGSFDGAIAATAAPAPAPAPAAVAAKAPSAAAASDEITDHEFESLLDELHGKGKFEPDAVVAKAPAPAAAIAAAPPPAAKPAAAPVPAAKAEPAKPAPAPARAPAPTGEKPVATEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGIETPEEREASGKSRGGKVILSAEQEGDHILLSISDDGKGMDPNVLRSIAVKRGVMDKDAADRLSDTDCYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSINIYSTKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLNLSTTNVVDGQEVVIVRDKALPLFYLKRWLVSSAAHEEQREGHVVILTVGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLKRYAARRI
>NZ_CP042804.1|WP_002554267.1|3980314_3981478_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MAVKVLVVDDSGFFRRRVTEILSSDPNIVVVGTATNGKEAIEQALALKPDVITMDYEMPMMDGITAVRHIMQRIPTPVLMFSSLTHEGARVTLDALDAGAVDFLPKNFEDISRNPQKVKQLLCEKINSISRSNRRSSGFGAASAASAAAPAAPTSSSRAPAPTTAPARAVPTRTAAPATAPAAHAHHAPAHPTTSGTPKRKAYKLVAIGTSTGGPVALQRVLTQLPASFPAPLVLIQHMPAAFTKAFAERLDKLCKISVKEAEDGDVLRPGLALLAPGGKQMMVDARGTVKILPGDERLNYKPCVDITFGSAAKSYGDKVLSVVLTGMGADGREGARLLKQAGSTVWAQDEASCVIYGMPMAIVKAELADAIYSLDDIGRHLVEACL
>NZ_CP042804.1|WP_002554266.1|3979574_3980315_-|flagellar-motor-protein
MDVLSLIGLILAFVAIIGGNFLEGGHLGALLNGPAALIVLGGTLGASLLQSPMSAFMRAMKIIRWIIFPPRIDLPGGVDRVIGWSMTARKEGLLGLETVADSEPDSYARKGLQLLVDGAEPAAIRSILEVDFITQETRDIQAAKVFESMGGYAPTVGIIGAVMGLIHVMGNLADPSQLGSGIAVAFVATIYGVAMANLILLPVANKLKGIAHRQSRYREMLLEGLLSIAEGENPRSIELKLQGFME
>NZ_CP042804.1|WP_010198142.1|3978680_3979568_-|flagellar-motor-protein-MotD
MARRRQAEEHENHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKILSQALVGVFNDTERTMKPIPIGDQRPVSVKPAEPLVKDSEQTDAGIGQASDDPLQTIAQDVRDAFGDLIKSDQMTVRGNELWIEIELNSSLLFVSGDAIPSDKAFTIIEKVSGIVKRFDNPIHVEGFTDDQPISTAQFPTNWELSSARSASIVRMLAMDGVNPARLASVGYGEFQPIAPNTTAAGRAKNRRVVLVISRNLDVRRSLTSSGSANVQPDAALRRAGTQTAPVPAKPPVRANAVNSPSPAP
>NZ_CP042804.1|WP_002554275.1|3991095_3992232_-|flagellar-biosynthesis-protein-FlhB
MAENENGQDKTEDPTEKKVKDSRADGQIARSKELTTLVVMLMGAGGLLMFGSGIAQMMSELMRDNFTISRETLMDQSYMGKALLSSGLHALVVMLPFLIAMLVAALVGPIMLGGWLFATKSLMPKFSRMNPAAGLKRMFSPHALVELLKSFGKFLIILAVALVVLSNERNDLVAIAHEPLEQAMIHSLLVVGWSSFWMACGLIFIAAADVPFVLYEAHKKLLMTKQEVRDEHKNSEGSPEVKQRIRQLQREMSQRRMMASIPEADVIITNPTHFAVALKYDPEQGGAPMLLAKGTDLVALKIREIGAHNQILILESAALARSIYYSTELDQEIPAGLYLAVAQVLAYVYQIRQFRAGQGKRPDPLGDIKIPPDLQRDA
>NZ_CP042804.1|WP_002554276.1|3992233_3993019_-|flagellar-type-III-secretion-system-protein-FliR
MQPMLALTDIQISTWVASFMLPMFRIVALLMTMPVIGTTLVPRRVRLYLAFAITVVVAPALPAMPPVQALDLSGLLLIGEQIIIGAGMGLSLQMFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSAVIGQFFTMLVTLLFLSMNGHLVVLEVLVESFTTMPVGGGLLVNNFWELANGLGWALSSGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMSMGDILNQYQPIASQALQSLRDMVRAR
>NZ_CP042804.1|WP_002554277.1|3993025_3993295_-|flagellar-biosynthetic-protein-FliQ
MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVIGPWLLKIFMEYMLSLYTSIPTLIG
>NZ_CP042804.1|WP_002554278.1|3993320_3994073_-|flagellar-type-III-secretion-system-pore-protein-FliP
MGALRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSFGGV
>NZ_CP042804.1|WP_004664467.1|3994072_3994513_-|flagellar-biosynthetic-protein-FliO
MRRWLSVLLTLPSLAWAAEPAAQAAPAQVANTVSGGMGGQVVQLLFGLILVIGLIFVLAWLMRRVQRVGPNNGQVIELVSSRALGPRDRLVLVQIGSEQILLGITPGRITPLHVLKEPVQVPVREQATPEFAQRLMELMGKDKDKK
>NZ_CP042804.1|WP_002554280.1|3994513_3994972_-|flagellar-motor-switch-protein-FliN
MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMTMEEFGSVPKSTGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>NZ_CP042804.1|WP_002554281.1|3995033_3996002_-|flagellar-motor-switch-protein-FliM
MAVQDLLSQDEIDALLHGVDDGMVQTDTVSEPGSVKSYDLTSQDRIVRGRMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVNFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSESLVMRANGVPSFKVKLGSHKGKMALQVIEPIARR
>NZ_CP042804.1|WP_002554282.1|3996011_3996512_-|flagellar-basal-body-associated-protein-FliL
MAKSEEVKDPATKGKLKLIILAVVALLLAVGLSVGATWFLMHKSESTPDPAAAAAAANVKPVAVFEPMTPAFVVNFNSNGRQRYMQVSITMLARNAADMEALKAHMPLIRNNLVMLFAAIPFESLASPIGQEMLRQKATASIQEVAQKELGKTVIEQLLFTNFVLQ
>NZ_CP042804.1|WP_082303361.1|3996903_3997233_+|hypothetical-protein
MPFVTLCVTQRFCYVSYVCVRLRLPFRPSATYFDGAKVGKSPRSCFRPDFVGFLRPVTDPGVAATGHPWPGAASLASCQATPGSAPGLSRHQGRNLRRLYHRDRKAFLP
>NZ_CP042804.1|WP_005731570.1|3997289_3998693_-|flagellar-hook-length-control-protein-FliK
MPLATNALLQATSTATSRSGTANNAVKSADSSKDGASSFSNVYAKQAKDAVPSRDDAPVKPARDKAAPDKDKVAAGKDKPASDQANAADTSSVADSGNDLPTRSTAAEDDAASAGSKQDDAQASADSALTEGLAIVDPVLDPALQAMAAQAPALPVARPQSPDATAAPVATVLTVTQAAPPAATEEAFNPDADPLDGLDAVQLALENANAKTQLAAQNTHAANKATPTNAEADPNQNLVNNLSALSEQLPSEESSTESSDKSFSGLIGEGLKDVKSAAGDTRVDNFADRLAALSQAAQPARVAAAPAAAPLMNQPLAMHQSGWTEGIVDRVMYLSSQNLKTADIKLEPAELGRLDIRINMAPEQQTQVTFMSAHMGVRDALESQMSRLRESFVQQGLGNVDVNVSDQSQQQAQQQAQEQASRAQRNGRGNGVSSGDTPDEIAGVDAAVPVSQPAARVIGSSEIDYYA

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Crispr_ID: NZ_CP042804_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042804_4

4380039-4380127

Orphan

Consensus_repeat	Method
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042804_4

>merge|NZ_CP042804|4|4380039-4380127|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGGCCAACAAGCCGAATGCTGACTTGTAGACTCCTGTAGGAGCGGACTTGTCCGCGAAGAGG

>NZ_CP042804|4|2|4380039-4380127|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CCAACAAGCCGAATGCTGACTTGTAGACT
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042804.1\|WP_016980803.1\|4372534_4373269_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NZ_CP042804.1\|WP_002554629.1\|4369077_4369755_-\|response-regulator	unknown	unknown	gnl\|CDD\|182755
NZ_CP042804.1\|WP_147232482.1\|4371024_4371282_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_005779604.1\|4391358_4394364_-\|autotransporter-serine-protease	unknown	unknown	gnl\|CDD\|226973
NZ_CP042804.1\|WP_005779611.1\|4386852_4387428_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_CP042804.1\|WP_005746236.1\|4395311_4396877_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042804.1\|WP_005779624.1\|4373269_4374028_-\|siderophore-iron-reductase-FhuF	unknown	unknown	gnl\|CDD\|274875
NZ_CP042804.1\|WP_005772408.1\|4371286_4371820_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NZ_CP042804.1\|WP_005779627.1\|4370305_4371094_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP042804.1\|WP_002554630.1\|4369782_4370133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_005779615.1\|4383605_4384871_-\|McrC-family-protein	unknown	unknown	gnl\|CDD\|370821
NZ_CP042804.1\|WP_080395603.1\|4375600_4376344_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP042804.1\|WP_005779609.1\|4387480_4387771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_080953416.1\|4388128_4391299_-\|autotransporter-serine-protease	unknown	unknown	gnl\|CDD\|226973
NZ_CP042804.1\|WP_005779622.1\|4373985_4375596_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236724
NZ_CP042804.1\|WP_005779619.1\|4377053_4379966_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
NZ_CP042804.1\|WP_002554639.1\|4380290_4381538_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NZ_CP042804.1\|WP_147232483.1\|4387874_4388075_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042804.1\|WP_005779613.1\|4384867_4386421_-\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|183088
NZ_CP042804.1\|WP_005779617.1\|4381623_4383420_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238613

Protein	Function_ID	Function_description	E-value
NZ_CP042804.1\|WP_016980803.1\|4372534_4373269_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	1.62254e-64
NZ_CP042804.1\|WP_002554629.1\|4369077_4369755_-\|response-regulator	gnl\|CDD\|182755	PRK10816, PRK10816, two-component system response regulator PhoP.	2.72873e-81
NZ_CP042804.1\|WP_005779604.1\|4391358_4394364_-\|autotransporter-serine-protease	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	5.27952e-94
NZ_CP042804.1\|WP_005779611.1\|4386852_4387428_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.47452e-24
NZ_CP042804.1\|WP_005746236.1\|4395311_4396877_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.46947e-64
NZ_CP042804.1\|WP_005779624.1\|4373269_4374028_-\|siderophore-iron-reductase-FhuF	gnl\|CDD\|274875	TIGR03951, Fe_III_red_FhuF, siderophore-iron reductase FhuF. Members of this protein family, including FhuF of E. coli, are siderophore ferric iron reductases that appear to play a role in iron removal from certain hydroxamate-type siderophores, including coprogen, ferrichrome, ferrioxamine B, and aerobactin. Genes occur in regularly in siderophore transport and/or biosynthesis clusters. The C-terminus includes four Cys residues in a C-C-10(X)-C-X-X-C motif that binds a 2Fe-2S cluster. Family TIGR03950 is similar, but especially in the C-terminal region, but likely acts on a different panel of siderophores. [Energy metabolism, Electron transport, Transport and binding proteins, Cations and iron carrying compounds].	4.9701e-67
NZ_CP042804.1\|WP_005772408.1\|4371286_4371820_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00363321
NZ_CP042804.1\|WP_005779627.1\|4370305_4371094_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.67623e-58
NZ_CP042804.1\|WP_005779615.1\|4383605_4384871_-\|McrC-family-protein	gnl\|CDD\|370821	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component. Members of this family of bacterial proteins modify the specificity of mcrB restriction by expanding the range of modified sequences restricted.	9.47066e-144
NZ_CP042804.1\|WP_080395603.1\|4375600_4376344_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.01325e-82
NZ_CP042804.1\|WP_080953416.1\|4388128_4391299_-\|autotransporter-serine-protease	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	5.43752e-85
NZ_CP042804.1\|WP_005779622.1\|4373985_4375596_-\|HAMP-domain-containing-protein	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	2.03449e-85
NZ_CP042804.1\|WP_005779619.1\|4377053_4379966_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP042804.1\|WP_002554639.1\|4380290_4381538_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NZ_CP042804.1\|WP_005779613.1\|4384867_4386421_-\|AAA-domain-containing-protein	gnl\|CDD\|183088	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.	1.13078e-28
NZ_CP042804.1\|WP_005779617.1\|4381623_4383420_-\|hypothetical-protein	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	2.41109e-25

>NZ_CP042804.1|WP_005779619.1|4377053_4379966_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MQTDTTRENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRTPEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ
>NZ_CP042804.1|WP_080395603.1|4375600_4376344_-|response-regulator
MALEPHTWHVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALATARIIAEQPDLVILDLMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQDMSGHVFSG
>NZ_CP042804.1|WP_005779622.1|4373985_4375596_-|HAMP-domain-containing-protein
MNSIFLRIYGGMLGVLVLVALLGVFALHVLNQSRGEQYRERLAHGTFTVMADNLVPLNDIERRRALAIWERLLGIPLSLQSIEQAGLDSGARGRLARGQVVVEQIGPHAARVYRQLSDKEPLLLNGEVQQITEQLARATIYLLIDELVRFPVDEQPARLQALRIDKGFGFDLHLLALDQADLDDDQRRRIYEGDTVMALGKGGDSIRVLAGIVDTNWVLEIGPLYQMNPYPLHWLLVIALMGLCFIGLVVYLLVRRLERRVLELEAAATQIARGSLQTRVPTEGSDSVGRVAAAFNSMAEHLQRSLMIQRELVRAVSHELRTPVARLRFGLEMVSDATTPEARRKYMRGMDSDIQDLDKLVDEMLTYARLEQGAPTLNFQRVDLDALIDQVIAELAPLRADVRVSRGECLTSEEGEAAWVEAEPRYLHRAVQNLVSNAMRHAENEVRISYRLEAQQCRIDVDDDGPGVPEEAWEQIFTPFMRIDDSRTRASGGHGLGLSIVRRIIHWHEGRALIGHSGSLGGACFSLSWPRTQVPR
>NZ_CP042804.1|WP_005779624.1|4373269_4374028_-|siderophore-iron-reductase-FhuF
MFQPVLAAYAGAALSAQLFSGPLERFGQTLLAADDSRPDSRPVVALPDLLQTERLDQLLLSIYGPQLMPSQLPVLVSQWAKFYFMQIVPPVLVASLVHGWHWPLALEQVALAVDKRGLPNGVRLAGEGEAWRGIPADPFQRFAGLLDDNLQPFIAALSAYGGLPCAVLWSSAGDYLEGCLVQLATCSTASLVPGLALLSERKMPDGRANPLFQAVRYVAQAQGDEPRRQRRVCCLSHRVEWVGRCEHCPLSG
>NZ_CP042804.1|WP_016980803.1|4372534_4373269_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MPPMTRLSDLSICCPELIRHWPLPQALPGAMLVSGRFDPLKLVDGDFQRCAVQMPASIQRSVAKRQAEFLAGRLCAREAMRQLDGRLHVPAVGEDRAPVWPADVCGSITHSTGWAAAVVANKRQWRGLGLDTENLLSHERASRLAGEILTAAELADMAAGPQDQIALRVTLTFSIKEALFKALYPIVQKRFYFEDAQLLEWSADGNARLRLLIDLSSEWHADKELDGQFSVLGDHLLSLVAVEG
>NZ_CP042804.1|WP_005772408.1|4371286_4371820_-|hypothetical-protein
MGRSRYTITEPEKPHFLTCTVVEWLPLFTRPALVDVLLNAWRYQQAHQGLQLFGYVVLENHLHFVAQAPELDKCVNSFKSFTARQIIHVLEKANAQSALQRLRFVKPMHKTDRVYQVWQEGSHAELVWNEAVMRQKLDYIHHNPVKRGYVDIGEHWRYSSARDYEGQRGLIDIQRWY
>NZ_CP042804.1|WP_147232482.1|4371024_4371282_-|hypothetical-protein
MMRRRACGTRIQLSCDALRRMPFRTLRVLLTTQSVETCIPTLERGNDDRNYRATLRAEGASATQPNIFLKNTCMSDQERSSAALS
>NZ_CP042804.1|WP_005779627.1|4370305_4371094_+|dienelactone-hydrolase-family-protein
MRVWIAMIMMGLTGLAQAAIKTEQIDYKSADGTKLVGYYAYDDAVKGPRPGVLVVHEWWGLNDYAKRRARDLAALGYSAMAIDMYGEGKNTEHPKDAMAFMQAALKDSDAADKRFDAGLEQLKKQPQTDPKKIAAIGYCFGGKIVLDAARRGEPLLGVVSFHGALVTNTPAKPGIKVPMLVEHGAKDSMVTAENVAAFKKEMDDAKADYKFVSIDGAKHGFTNPDADRLSHGDHGGPDIGYDKAADERSWSDMQVFFKKIFG
>NZ_CP042804.1|WP_002554630.1|4369782_4370133_-|hypothetical-protein
MLNLNKFFLALAFLGGSAAAQAGDGRLDVARIEFGKTSERLDDANSWGHALGEQAHTNVSVGTLYSPPVYGTLTGTHNGVPVSREILLGSYDVTQHVPVSARLLSTDATMSFHSLS
>NZ_CP042804.1|WP_002554629.1|4369077_4369755_-|response-regulator
MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGLDLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNERCT
>NZ_CP042804.1|WP_002554639.1|4380290_4381538_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLSWDEFDKEDGEVVAKATNAGHANEANMDRLDSAGGLAAQEARAVTAADSAALIRAKKALDALDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD
>NZ_CP042804.1|WP_005779617.1|4381623_4383420_-|hypothetical-protein
MSATTLAIENIYHETKEFLIVGLTGRTGSGCTTAAQKLASPSFGIPSDGYDGLSINEIKKHKIIKKYIDSISWTPFYKLEVSGLITFHLLLLSDLELDSYLRGVSLTDASVVKISELFSVEFSEVRKAVVERMSHGYTFVADFATDWYRLYFQDIPAVTSSFRQILTDSEFTKLYQKTGDNIRSSGRANDNVFNSAEIFNFPKHINLIIKVAHAHARLRKVECRVVIDAIRNPYEAFYLKRRYANFYLVSINTDNSQRLLSLRAVRGFSDAQIKELDEKEYPQKLSGANRFIAQNIQECIENSDIHIHNSKVSNFTHNDLVSQLAWYVTLMIHPGLVMPTSAENCMQIAYSAKHSSGCISRQVGAVVTDASYSIKAVGWNSTPQGQTPCLLRSASDLLDRVNPEDYSDYELNDKVFHNAMELKYKDLSLIAKDNGRNLAYCFKSVQNEIEGEKNQVHTRSLHAEENAFLQISKHGGQKVSGGILFTTASPCELCAKKAYQLGIKKIFFIDPYPGIATDHVISVGIDRPVLELFRGAVGRAFYQLYQPVMPYKDELELVFEIPKYSNPDKKSRSVLQSENEKLQERIRVLESELDSRKI
>NZ_CP042804.1|WP_005779615.1|4383605_4384871_-|McrC-family-protein
MKTTVTVREYARLTTSNIPNPTLDVAQVSTTAFDWLCETSSRFSKAGAALVQVEGRRWLKLDNYVGALETPCGTRIEILPKHFEQGDCIQQSRALLRRMIQKSLDLPTRKVGATALQRFDAPLTEWVMSRFLEALDHLIKRGLRFDYQRVEEEQHYLRGQLNTARQMRQPPGRQHHFQIRHDIFLPDRPENRLLKTALDIVCKTTQDPSNWRLSHELRSLLLEIPSSQDTAQDFKQWRHDRLMAHYQPVKPWCELIIQQQTPLAIAGEWQGMSLLFPMEKLFERYVAACLKDSLPPDATLYTQRSSEYLCTHQGKKVFQLRPDLMITQGEKSWVLDTKWKRLDSELGSKNYGLSQADFYQLFAYGQKYLGRQGDLVLIYPKRGAFQEALPVFEFSEGLRLWVVPFDLISEKTIVIEKITRQ
>NZ_CP042804.1|WP_005779613.1|4384867_4386421_-|AAA-domain-containing-protein
MPSLNQIFFGPPGTGKTYATVEATLQILDQPFLVKNAGSRSALKARFDELLAAGDVRFVTFHQSFSYEDFVEGLRATTDEQGQIRYEVVSGVFKSLCESIASELSGKYRAFKVGDRYGTGYKVTRATPDVVEIEKPQGKHLPIGMSLLNTLASYVDAGTFTIEELGNGRWDKKVPGSVLDPFLVNGYKNFLPSMVEHMLGKNEEGLFEPAPIQHSDAKVLIIDEINRGNVSRIFGELITLIEPSKRAGADEALEVMLPYSKERFSIPGNIHLIGTMNTADRSLAALDIALRRRFTFIEVPPNPELLDEVEVDGIAIDELLSVMNQRIAALLDRDHCLGHAYFMPLKDEPTLERLEGIFREQILPLLQEYFFEDWQRIQWVLNDQRKAPENSFLIQPSQDLIALFGDTATVGQSNERWELNLPAFQKIESYLGVIDHNLKVGALLEAKNVRTDGVDIRQSADGRIDVYRGGQHIKPAKPLLRELASKHGISITSALGTALNTRSLGRKIIKFLSEQQG
>NZ_CP042804.1|WP_005779611.1|4386852_4387428_+|Bro-N-domain-containing-protein
MLSNLFQNSAREPREVCAGFTPTPFHRHNRQLLALLLENQPWFSARDLGRMIGWPLNERTLRKLDADQHRMITLDLHGEAQPELMVSESGAYAMMVHHYHAENRGLRQWITNEVVPALRDGQVPFDDCTPQLSMLQWPGLSVSMLHWHGEPWIRLRDMPMVLAHPQMQVDARPHRLAKSWWRAVLPVSRLG
>NZ_CP042804.1|WP_005779609.1|4387480_4387771_-|hypothetical-protein
MKKTGTGFVAILAFLSAFSANAREAQVTDASIVKAIIQESIDSYPGNCPCPYNSARNGSQCGKRSAYSRKGGYAPICYKEDVTKEMISDYRRRLKD
>NZ_CP042804.1|WP_147232483.1|4387874_4388075_-|hypothetical-protein
MPMLRVGTHLVTLCVTSKPSRECWITHKSKLLPGGRGSELVSDLPGTGSKTYVCGTSFANQISGSA
>NZ_CP042804.1|WP_080953416.1|4388128_4391299_-|autotransporter-serine-protease
MQMHARGDSCALTKDGRFMKDASTTRHTSVKPLGQAIRAINRASCGALACYLATLGVAHAAPYVEAGQAGNAASWRSAEFNADWGLGAINADQAYAAGYSGKGIKLGIFDQPVYAPHPEFSSANKVINLVTSGIREYTDPYIPVKAGDAFRYDGAPTLDSGGKLGNHGTHVGGIAGGDRDGGPMHGVAYNAQIISADNGDPGPEDGIVLGNDGAVYQAGWNALVNSGARVINNSWGIGITDRFSKGGRDPAFPHFTVQDAQVQFDQIRQILGTRPGGAYQGAIDAARSGVVTIFAAGNDYNLNNPDAMAGLGYFVPEIAPNWLTVAALQQNPDATAAATTPYTLSTFSSRCGYTASFCVSAPGTRIYSSVLNGTSLADLTVGWANKNGTSMAAPHVAGSMAVLMERFPYMTGAQVADVLKTTATDLGAPGVDALYGWGMINLGKAVNGPSMFVTEADIPAEFRIDGAYGDSQFVADLPGVGAIVDAGKPTQRTCTGPQCGLDVWSNGISGHGGLTKQGIGTLVLTGANSYSGPTLVNQGRLAINGSLASAVTVNNGGILGGNGSVASLTANRGGTVAPGNSIGTLQVAGDLNLAPGSTYAVEFSPTASDRIVVGGTATVSGANMALSLENDNPALLSSSQTRSVLGQQFNVLQASGGIQGQFGSVTDNFAFLDGNLAYSGTGVTLALERNGDSFASAAQTSNQRSVAQAIEQLSAGNSVYESIILSQDAASARRAFTQLSGEVHPAIATQLINDSRQLRDAVGDRLRVEGLYDQPAPGTEDNSVWVKALGAWGKNSGSSDSASSTSSLGGLLAGVDGLISEHTRLGAMAGYSDTSLSLGDDTHSRASADSYHLGAYIGHEQGALRLTAGASHSWHRIDVKRDLQFGAFSDRQKVKRDAQSSQVFTEAAYRLNLQPLALEPFANLAYVHFDSDSFTEKGGATALKGSDDIRDTVLSTLGMRAGNRFNLNDTQKLDVSATLGWQHNLSDTSSEQHLAFASAGNSFNVQSVSMDRDAAVVGARASLALGKDARINLDYNGLLGARDKTHGVGLSLDWQF
>NZ_CP042804.1|WP_005779604.1|4391358_4394364_-|autotransporter-serine-protease
MRKSKRLGAVRYSFKPVASGALCALSFTFGCSAYADYVEQGKPGDAASWRSAEFQSDWGLGRIQADQAYAAGITGAGVKIGALDSGFDSSHPEATSSRYHAVTATGTYVDGSPFSITGAINPNNDTHGTHVTGTMGAARDGVGVHGVAYNAQIYVGNTNQNDSFLFGPSPDPQYFKAVYGALADAGVRAINNSWGSQPSDVTYATEAGVRAAYAQHYNRGTWLDEAANVSRKGVINVFSAGNSGYANASVRASLPYFEPDLEGHWLAVSGLDSSNGQRYNQCGLSKYWCITTPGRLINGTVPGGGYGIKSGTSMSAPHATGALALVMERFPYLNNEQALQVLLTTATQLDGSVTQAPTNSVGWGVADLERAMRGPGQLLGTFDANLGAGVSDVWSNDISDQALLQRQAEDTAEQATWQQTLISKGWQNGVASTASQQDQADYATGTARAAAAAQRQYQGSLVKSGAGRLILQGANTYRGDTLVNGGVLSVNGSLVSAVQVNAGGTLGGNGQIGGLTARNGGIVAPGNSIGTLQVNGDVTLQPGSTYAVELSPTASDRIVATGSATVSGANMTLALENATPVALSSAPIQSVVGRQYNVLQAANGVNGQFGSVTSNYAFLGGRLDYAATGVALNVEQTSAFSSVAQTPNQSAVATAAEQLGAGNAVYENLLLTQSAAAARDSFQQLSGEIYPAIGSVLINDSRQIRDAVGERLGTSVFGTDGNRAAQDHVWIKALGAWGKTDSRDDTAGYTTSIGGLLAGVDGNLTDDTRLGVVAGYSDSSLNMGSGTHSRASVDSYHLGAYLGHEIGALRLTLGGAHSWHRIDAQRDVQVGGAAGKEKTKHDAQSTQVFTEAAYRIHLQPATLEPFANLAYVHLNTDSFTEKGDAAALSAGSDNRDVVLSTLGVRALKTIAISDRQKIDLSGSLGWQHNLSNTDSEQHLAFASGGGSFGIESSPLVRDAALVGAHASVALSKDARVSLDYSGQLASREKSHGVGLSLNWQF
>NZ_CP042804.1|WP_005746236.1|4395311_4396877_-|methyl-accepting-chemotaxis-protein
MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVALSGFTREELVGQPHNLVRHPDMPASVFAHMWETIKQGKPWMGVVKNRSKQGDYYWVSAYVTAVYENGRIVGYESVRSLPTRDQVRRAEALYARLRAGKSAVSATSSAAYHLVRQLPMILCALALAVGVYLLDDLPSIIMIPIVMVVLGGFLEMRQRRSIRNTLEEHPKAFTSSLVALTYSDNRGPQAQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMANSVTDIGNAVGELASATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGADRAVQTANKGEQISQESVASVEAVQKALDGISQSVTRITGMSQQMASASEEQSHVAENISQQITRIAQLCDESASQAQQGSQISGELEEMAQYLHSLAERFSR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3675119 : 3685588

uncultured_Caudovirales_phage(75.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002553978.1\|3675119_3675791_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8
WP_005745689.1\|3676144_3677053_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005780041.1\|3677038_3677818_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005745692.1\|3677832_3679134_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-61	36.1
WP_002553985.1\|3679368_3679761_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.2e-57	82.3
WP_005745693.1\|3679762_3680125_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.1e-35	62.8
WP_005745694.1\|3680124_3680424_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.9e-30	62.6
WP_005745695.1\|3680420_3680756_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	9.8e-43	76.6
WP_004659528.1\|3680752_3681754_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.0e-163	83.2
WP_005780036.1\|3681862_3682861_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_005745699.1\|3682912_3684307_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_002553992.1\|3684307_3685588_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	45.8

DBSCAN-SWA_2

5428164 : 5462645

Pseudomonas_phage(62.96%)

lysis,tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010194979.1\|5428164_5429376_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_011103218.1\|5429479_5429581_+	hypothetical protein	NA	NA	NA	NA
WP_005743959.1\|5429577_5430996_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_002551954.1\|5430999_5432094_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5432156_5432507_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_004663836.1\|5432606_5433641_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_004660765.1\|5433774_5434203_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_005743960.1\|5434311_5435220_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_005743961.1\|5435283_5436060_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_004660762.1\|5436163_5436502_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_004660761.1\|5436624_5437272_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_002551946.1\|5437348_5438143_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_005743963.1\|5438385_5438808_-	OsmC family protein	NA	NA	NA	NA
WP_005743964.1\|5439017_5439662_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_005743965.1\|5439673_5440369_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_005781013.1\|5440398_5441235_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.1e-69	55.8
WP_004663830.1\|5441231_5442281_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	6.9e-111	57.7
WP_002551940.1\|5442302_5442902_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.5e-73	64.7
WP_080164944.1\|5443314_5443809_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	5.0e-27	47.8
WP_005781015.1\|5443820_5444366_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.6e-69	72.2
WP_010194967.1\|5444463_5445465_-	hypothetical protein	NA	NA	NA	NA
WP_005743970.1\|5445770_5446337_-\|tail	phage tail protein	B5TK80	Pseudomonas_phage	2.7e-45	46.9
WP_080164945.1\|5446344_5447667_-\|tail	phage tail protein	B5TK79	Pseudomonas_phage	3.0e-71	49.3
WP_005743972.1\|5447815_5448415_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	7.5e-86	72.4
WP_005781020.1\|5448402_5449443_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-131	69.8
WP_004663819.1\|5449432_5449831_-	hypothetical protein	B5TK74	Pseudomonas_phage	6.8e-43	64.4
WP_004660748.1\|5449827_5450340_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	9.6e-66	75.0
WP_004660747.1\|5450336_5451464_-	hypothetical protein	B5TK72	Pseudomonas_phage	7.2e-114	60.8
WP_005781022.1\|5451467_5452853_-	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	5.9e-110	45.8
WP_005781024.1\|5452849_5454994_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	3.0e-76	39.1
WP_002551919.1\|5454993_5455200_-	hypothetical protein	NA	NA	NA	NA
WP_002551918.1\|5455124_5455421_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	77.4
WP_003316279.1\|5455417_5455765_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
WP_005781026.1\|5455825_5457322_-\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	6.4e-235	80.7
WP_005781028.1\|5457340_5457529_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-13	72.3
WP_005743983.1\|5457525_5458116_-	hypothetical protein	B5TK65	Pseudomonas_phage	6.3e-53	52.6
WP_003372736.1\|5458162_5458501_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-20	59.2
WP_003411734.1\|5458481_5458871_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_010194964.1\|5458993_5460166_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_005733278.1\|5460168_5460363_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	2.7e-13	92.1
WP_004642425.1\|5460635_5461079_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	6.0e-24	45.8
WP_016982693.1\|5461190_5461880_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.4e-51	47.6
WP_005781038.1\|5462032_5462281_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_004415824.1\|5462378_5462645_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042804

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection