CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	33 crisprs	csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas3,cas5,cas7b,cas8b1,DinG	3	20	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020449_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_1

13802-13936

Orphan

Consensus_repeat	Method
AGTTCCGTAGGAACGACAGATACTAACAACGGGTTTCAACCCGGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_1

>merge|NC_020449|1|13802-13936|CRISPRCasFinder
AGTTCCGTAGGAACGACAGATACTAACAACGGGTTTCAACCCGGTGAAAAAGAACATAAGAGAGACATTATCTCTTTTTCCGAGAATGAGTTCCGTAGGAACGACAGATACTAACAACGGGTTTCAACCCGGTGA

>NC_020449|1|1|13802-13936|CRISPRCasFinder
AGTTCCGTAGGAACGACAGATACTAACAACGGGTTTCAACCCGGTGA	AAAAGAACATAAGAGAGACATTATCTCTTTTTCCGAGAATG
AGTTCCGTAGGAACGACAGATACTAACAACGGGTTTCAACCCGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015423791.1\|11709_12717_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|367788
NC_020449.1\|WP_015423785.1\|5542_5884_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_020449.1\|WP_015423790.1\|8979_11703_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277347
NC_020449.1\|WP_015423783.1\|3783_5040_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NC_020449.1\|WP_015423789.1\|8146_8983_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_020449.1\|WP_015423802.1\|24510_25014_+\|fumarate-hydratase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|180724
NC_020449.1\|WP_015423794.1\|16551_17442_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|226785
NC_020449.1\|WP_044278730.1\|12883_13672_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239488
NC_020449.1\|WP_015423798.1\|21713_22538_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_020449.1\|WP_044278731.1\|14348_14564_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423801.1\|23655_24507_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|377546
NC_020449.1\|WP_015423784.1\|5036_5534_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|133477
NC_020449.1\|WP_015423786.1\|5880_6441_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NC_020449.1\|WP_044278732.1\|22773_23652_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_020449.1\|WP_015423787.1\|6440_7385_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|223301
NC_020449.1\|WP_015423799.1\|22571_22772_+\|signal-peptide	unknown	unknown	gnl\|CDD\|378629
NC_020449.1\|WP_015423788.1\|7381_8134_+\|DUF116-domain-containing-protein	unknown	unknown	gnl\|CDD\|376696
NC_020449.1\|WP_015423793.1\|14875_16219_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223609
NC_020449.1\|WP_015423795.1\|17438_18275_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349966
NC_020449.1\|WP_015423797.1\|18296_21026_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|376535

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015423791.1\|11709_12717_+\|radical-SAM-protein	gnl\|CDD\|367788	pfam04055, Radical_SAM, Radical SAM superfamily. Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.	1.22872e-17
NC_020449.1\|WP_015423785.1\|5542_5884_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	2.43911e-28
NC_020449.1\|WP_015423790.1\|8979_11703_+\|metallophosphoesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.29781e-19
NC_020449.1\|WP_015423783.1\|3783_5040_+\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	4.17195e-31
NC_020449.1\|WP_015423789.1\|8146_8983_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.36725e-77
NC_020449.1\|WP_015423802.1\|24510_25014_+\|fumarate-hydratase-C-terminal-domain-containing-protein	gnl\|CDD\|180724	PRK06842, PRK06842, Fe-S-containing hydro-lyase.	1.11403e-59
NC_020449.1\|WP_015423794.1\|16551_17442_+\|DNA-alkylation-repair-protein	gnl\|CDD\|226785	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair].	0.000130734
NC_020449.1\|WP_044278730.1\|12883_13672_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239488	cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.55394e-25
NC_020449.1\|WP_015423798.1\|21713_22538_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.8315e-36
NC_020449.1\|WP_015423801.1\|23655_24507_+\|fumarate-hydratase	gnl\|CDD\|377546	pfam05681, Fumerase, Fumarate hydratase (Fumerase). This family consists of several bacterial fumarate hydratase proteins FumA and FumB. Fumarase, or fumarate hydratase (EC 4.2.1.2), is a component of the citric acid cycle. In facultative anaerobes such as Escherichia coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre.	2.08209e-132
NC_020449.1\|WP_015423784.1\|5036_5534_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|133477	cd06971, PgpA, Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism. Phosphatidylglycerophosphatase A domain represents a family of bacterial membrane-associated enzymes involved in lipid metabolism. The prototype of this CD is a putative Phosphatidylglycerophosphatase A (PGPase A) from Listeria monocytogenes. PGPase A (EC: 3.1.3.27), encoded by the gene pgpA, specifically catalyzes the formation of phosphatidylglycerol from phosphatidyl glycerophosphate (PGP). It requires Mg2+ for activity and is inhibited by sulfhydryl agents and freezing/thawing. PGPase B encoded from pgpB is not included in this family, which also acts on phosphatidic acid (PA) and lysophosphatidic acid (LPA). Aside from PGPase A and B, evidence shows that there is another PGPase existing in E. coli. Thus, PGPase A is not essential for PGPase activity in E. coli.	1.07483e-40
NC_020449.1\|WP_015423786.1\|5880_6441_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.04494e-59
NC_020449.1\|WP_044278732.1\|22773_23652_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	7.4986e-28
NC_020449.1\|WP_015423787.1\|6440_7385_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|223301	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis].	6.54083e-115
NC_020449.1\|WP_015423799.1\|22571_22772_+\|signal-peptide	gnl\|CDD\|378629	pfam11297, DUF3098, Protein of unknown function (DUF3098). This bacterial family of proteins has no known function.	5.47404e-06
NC_020449.1\|WP_015423788.1\|7381_8134_+\|DUF116-domain-containing-protein	gnl\|CDD\|376696	pfam01976, DUF116, Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.	3.45739e-57
NC_020449.1\|WP_015423793.1\|14875_16219_+\|radical-SAM-protein	gnl\|CDD\|223609	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only].	3.15485e-28
NC_020449.1\|WP_015423795.1\|17438_18275_+\|RNA-methyltransferase	gnl\|CDD\|349966	cd18093, SpoU-like_TrmJ, SAM-dependent tRNA methylase related to TrmJ. tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.89566e-56
NC_020449.1\|WP_015423797.1\|18296_21026_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|376535	pfam01364, Peptidase_C25, Peptidase family C25.	5.75227e-45

>NC_020449.1|WP_044278730.1|12883_13672_-|phosphatase-PAP2-family-protein
MSKFYPFCFAVVLVLMAVPLFSAEEDNFLQDYLLSYPETIYAGATAPFSWQKDNWLQASAIVITGGCLYFLDDDLRDCFQRNRNEVTDDIFTVAKQFGEVKIMFPVMALTALGGYLTKDEKTIDTSLLCLKSSLLSLAVTQTLKLASQRQKPYKEEGKEFWNGKGISFSRDSFPSGHTTLVWSLAPVLAEQYKNSRWVPPTVYTIATLTSLSRLNDDQHWSSDVFAGAVIGYVTARLVLKNTPRLMLNAQPEINGISFKYKF
>NC_020449.1|WP_015423791.1|11709_12717_+|radical-SAM-protein
MPQKRPQTSKLLYLPWIIKHLSYYLKLNTHILKKGVPLKEILILKYPFWFKDAKNPPLLSVDITDACNLRCIYCNNPFFPYPRTMMNQDVFKALIERLKRHPVSRIRISGGEPTLHPQFDTMLKEMSYYCKYLSIITNGQWQNPEVNEKLLNCGLSFIELSMDAVGKDIYEKSRPGADYDLFFQNLKQLYKLRNQYKVDLIIRIRLMVRPSTMDKEKEDSRFLRQFCDCVLPQHILQHPETPSQEDVFIQNSILQNSLPVCTVPYRDLQIRPDGLVPLCPAKGCAINPEDRIFIGDIQKDEILDLWNAPLLKQMRDAHRNRKGEILKLCRNCHYS
>NC_020449.1|WP_015423790.1|8979_11703_+|metallophosphoesterase
MNRKYTLFLLILLSCGLLFAQTALSCYDIQYNPEGGGDSPYLDQIVTVQGIVSGVTYYSGSGYNNYGFFISDPTGGPWSGLFIYNQTYHPALGDFVRVTGTVKEYYGLTEISQVSSLLVLSQGNPLPAPTEINTGSLDNFSSGEQWESVLVKVVNVTVTVEPNSYQEFYVDDGSGQCQIDNQFFGSNHSWNNITLGQVYSEIIGIVDYSYSYYAINPRSETDMISGANTVTLAIPHQSVGLHSSVSVPINAYRIETAQNYQSYSFSISFNPHILNYESINTAGTLSQAGNVIASAESGVLSVSYQSNSSLSGQGILLKLNFYAANTGTTALTFSDVIFGTDVIQSCINGSVTVNSSYNSPGDTLTVIQRPLLNIPEIVVPGETLKITCLAPQNTSNWNAWLRHNNKRLNLLITNSQWLTLPNRWELTTTVPSVPVYELYDLEVSASGGISDITANAVQVIPSRKNNYYFVHITDSHMPNRLYYPNAGFDADSTAVEDFRAVMDDINIIHPEFVLFTGDLVNEGELEGFANQYWFGWTQKLLTEFEVPVYVTAGNHDIGGWNQTPPPAGSARKNWWKYFGWSWLNNEDLSFPYHTQDYYFTYNNTVFIGLESYDNYDYWRPAIYGETSYTDQQIAWLNNTLSLFPNYKKVLFHHYDFKEQLFLSSLGIDLSLWGHIHSNNGSIYTYPYNLATRSVCDGNRAYRVIRVNNEQLTPYATIYAGATGNNLSVQFYPSNYGVADSVKAIIINNQPLAFENAQLKFIMPQRDTGYNVSGGTLTQVDKSGNYNICYVRVSLSANSTSTVTVTENGVEISDPVQVPVVFTIKSVYPNPLVKQGNLQVISDKTFPELHLQLFNLRGQLVYQECLKGISQGESHLSFTLPDSLASGIYFLRFREDKTQIHKILILQR
>NC_020449.1|WP_015423789.1|8146_8983_+|trypsin-like-peptidase-domain-containing-protein
MKRINLFTIILILLLNAFITMALINKYGNKTPETDTFVSQGTSQPSKASSAKRINSITEAVKAVEPAVVSINVIKTEYVRAVSPFGLGFFDFFGSIPLLRQIESIGSGVIYDPKGYIVTNAHVVSGATQIKVILPDKREFSGTVAGIDEIHDVAKVKITGNNLPVAEMGNSNDLIIGEWSIALGNPYGFLMNDSKPSVSVGVISAVNRNFAARQDRHEYKSMIQTDAAINPGNSGGPLVNINGEVVGINTFIFSENGGNIGIGFAIPINSVKTILAKI
>NC_020449.1|WP_015423788.1|7381_8134_+|DUF116-domain-containing-protein
MRKEYFSIIKFPVLVSFSLLIITLIFFFIVLGSYHRLGLSVWGNVLYTILFMVIVILIGTWILALVSTHKKIKPLWLRHYLSWMLVNIYYPLARVFGRICFQKMDTIQESFLYFNNEIVVTNYQGMHSSNLLLLLPHCLQSSNCKIRINNNIVECQECGGCDMAKMKALTKDYQIKTAVASGGSLARKLVNDTHPDIIIAVACNRDLTEGVRESWRYPVYAVLNERPKGPCFETTVSPAVIDFAIHKFVQ
>NC_020449.1|WP_015423787.1|6440_7385_+|methionyl-tRNA-formyltransferase
MRYLFIGSSDYGLPALNKLRQNGYEPSLIISQPAKPAGRNLHLTPTPISQYAIEQKLPLFTPMDINSAESITKMAEQKADIIVTAAFGEFINKKIRNLCPFGAVNLHPSLLPKYRGASPIQSAILNGETETGTTISLVSAKMDAGPILAQTKLSIAENETYSELKERLAEQAGDLLLQFWKKLITEKSLCGTKQDESKATYCYKITNKTCQIDWNKRTEEIHNQIRAFSLTPGAWTLFRYNKLKILCSEKTVEPANGEPGLICKIDKKRGFFVNCLDFKLLITKVQPAGKKVMEAVAFINGARLREKEKLGGEK
>NC_020449.1|WP_015423786.1|5880_6441_+|peptide-deformylase
MKYKPKILPVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVIDPEQDNKLNKKSPIVMINPVIENKEGEVVYEEGCISLPDIFADVSRSKKITYSYTDRMGNRITETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKLQARAVNGQNILEGLTL
>NC_020449.1|WP_015423785.1|5542_5884_+|preprotein-translocase-subunit-YajC
MNYILLQAAQKGTTQQGGAGTTLIFMIIMFVILYLLLIRPQQKKAKETQKMQDSLKVNDKVITSSGIYGRVVSIKPDKGIVVLEIDDTNKVRIDIQKNAIIGVVTTSEPEPEK
>NC_020449.1|WP_015423784.1|5036_5534_+|phosphatidylglycerophosphatase-A
MTAEKPQKLNIYTFLATLCGIGFIPVMPGTFGSLLAYGIYMLFSGSPFQGKALFYALPALIALCLIAVFLSTKAEKTLGKDNGSIVIDEFCGYYVSVLCLPHSWLIGLYAFALFRVFDIAKPFPIKKVQELPGGWGVITDDIIAGIYTNILIQILTKIYPKFFGL
>NC_020449.1|WP_015423783.1|3783_5040_+|peptidylprolyl-isomerase
MRKLAITLILLVLTLFLSAELIDKIVAKVGTDIILLSDLQKEMVQMQSVGLLEEDTDPRDVLDEMINQKLIIQKAKDLNITVNDEEIKVMAENYLKKVKAQYPSSSAFAADLKKSKLTESDLLQLYRDILTEQALSDQILKKEIINKVSVTEAEVINFYNATKDSLAVKPVSWDLGIIFREIKPNQKSKEAKLAEIKEIQTRLKNGEDFATLASTESDCPSKEVGGDLGFFKRGQMVKPFEDAAFALQLGEISDIVESEYGYHIIRLEEKRGNEIRARHILKALTPTAEDSLRERQLMEEIRNRYAKGESFASLAREYSMDQESREDGGSLGEFTERDLPSLFATQILQTPVGEMTPVLENQGMLYIFCRLKEYPPRIYKYEEVKDQAREMVLKRKQIDAFNAWIENLRREAYVQITL
>NC_020449.1|WP_044278731.1|14348_14564_-|hypothetical-protein
MIPTFSGMTSIGIPSFVGMTSIGISAFVGMTSIGISAFVGMTSIGISAFVGMTSIGISAFVGKIKDFSLQK
>NC_020449.1|WP_015423793.1|14875_16219_+|radical-SAM-protein
MKNVKTIALNQLINYIANDPLNKLPKIMELAKKLDRKGTYLKLFTVITDALSDETSHWHKFVENLFNNVDSKVIHKLAECFAINTTLVGRPIREKYKAKYSIQVPWAILMDPTSACNLSCTGCWAALYGKQHNLPFEVMDSICKQGKKLGIYWYLFSGGEPLIRKNDIIKLCKKHQDCFFLSFTNGTLVDEKFCEEVLNAGNLTLCFSIEGNEPATDMRRGKGGYKRVIEAMEIMKKYRLFFGYSTCYHRYNTESVASDEFVDDMIARGCFYAWNFTYIPIGKNAQPDLIATPEQRAYMYKRVNEIRTHKPILALDFWNDGELANGCIAGGRSYFHINAAGDVEPCAFVHYSNVNIKEVSLLEALQSPIFKAYQKRHPFNQNLLQPCPMLDNPEKIMEIVNEANAKSTDIEAPESIEELCAKTKPAAEKWAPVAKELWENREKNSST
>NC_020449.1|WP_015423794.1|16551_17442_+|DNA-alkylation-repair-protein
MIKEVGRLNLDDYKILDTEVEKIFRNIEKGKDALAEKQITDLGNTANYFVREELGKRLAQYSGNGEMDAICGRLLDHFIYGVRATALFYFYYKHQDHPEIIIKTVEKTFESVPWESETICFELWKKAPAVMQEYMPTWAESDNEKKRAISMHGMENIASRHPQYVLSFVSNLLDDESEEVQKKVCHILTQVGRQKPLQCYNSIRRWLIEGDEKRIRILWQAMKKLANIYAQRSRRDKTNEFMNVTQKTIAEWRNDPDPKVATMGAKLSGIIAKKKKRENQNQKAANSENNYYSRQI
>NC_020449.1|WP_015423795.1|17438_18275_+|RNA-methyltransferase
MNIRQDFSRIAVILVEPIYGGNVGAIARIMHNFCFSDLRIVGKVPEKNDFYLAMHSEEILENVNIYSTLEDAINGLDRVIAFSRRLGKNKPVDFTPGQMAKYVHSLPDSNIGLVFGRETYGLTDSEAELCPLRCHFMANPSFPSLNLAQAVALALWEIYSLPWEEKQKGKKYYNSASGKELDEIRNYILEVMRQCGFFQRRETINWDTFLAKMLAQLNPDKNMLYRLRQMFNRFNVLVTGKGLGYELPNSSSEKEENKKNSELDNSCSTASRPCNPDT
>NC_020449.1|WP_015423797.1|18296_21026_+|T9SS-type-A-sorting-domain-containing-protein
MKRTLCLVLLCLPLLILATTLKTPIQFPVPQEGLSQSALFKQGYGFSSAPGTLQLPVKQINILLPKDAVVDNWQVILEAEATFTEEPPEFNSAFSNGEEILTSPVNRNIYSRYRYMGLRKWGELNYACFNVLPAIYNGSHWLWSPSCQITINYTSSAKAKGIIPPTFTDAGFFANPQYLSQWYTDSKEQNNHLLVITTPELYTALDWLVTFRQSQGVDVSFCDIAIALASGTGTDNAEKLRNYLQNTYASTPFSYLLLVGDYDTVPVAYVTPEPNGQETVPTDFFYSDLSSNWDTDNDGKRGEYSTGYMNEDYGIDFTPEVFVGRISTNSAANVTEIANRIVNYEQSSQPWKEKNLLAGAFLNYQGEPESAYLQTDGATFMEFMRNTCLAEQENFTMYEQEGVVLSYPCDLPVNYDNFRNKINSESQGFINWSAHGSSISSSRKVWINDNNENNFPDPNEMQWMNLVNRQSFDDLENTNGTVIYAASCYNGMVDYNNPCLAEYALIKKAVGVIAATRTGWYKIGWQNPGWGGLASYNYHFVENFRQAKLDLGSAHSWANLLHTQYYLFGDPVDNGGIIYPELQNVYTYMLFGDPMVGWTPNQISPAGEILVWEPEGNGGLAVVNALRKISNFNVIYSDKLIPDYDYLNNFEAVFYLAGNSLPETELEPTSYEYSYLNNYLEAGGKLYCENYIDDSYGELYTKMGVQMADNNPLNITSIFYPSSNLAWNYNGADSSIYPIIPAQTTAQGIFFASSDNTNNPIIGILNTTDNYSVLTSSFRTTQIESGEYTLNNMIGIILSELNVMDYNPVGNNDPIMVPVIQSVSVYPNPASQSSSIRFNLTKSAPVSIAIYNIKGQKVKDLIGSELKSGNYQFTWNGKDNNGRYCSSGVYYYRIVTPEKNITKKMLLFK
>NC_020449.1|WP_015423798.1|21713_22538_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MILRKIKCILWHIYLISEFFLVSALIRIFSADSKLCRKRLVKNNTRISKRFIRAFNIKLTINNSESLQKLQDIPYLAVSNHTTYLDIILLSAVENFVFITSVEMRKNPFLGRITKSGGCLYTNRKKYISLPAEIEKFASAIHQGFKVVLFPEGTSTNGITVQPFRRSLFQVAIEAKCPILPVCIKYKAIDGKKIEKKNRDLIYWYGDMPFLIHYLKIIGHSLEAQIDILTIIPYQEGKTRQELANQVYGQILSSYLEQESSVDKQSSSLSMVLK
>NC_020449.1|WP_015423799.1|22571_22772_+|signal-peptide
MNNKDDEKNKLHLNRTNFILLLVAAIVLVVGYIIMSFNEITISPILLVIAYAVIVPFALLYHPKKK
>NC_020449.1|WP_044278732.1|22773_23652_+|DUF58-domain-containing-protein
MPLLSEEALVRLNKFQLTAKSIVEGFLVGLHKSPYHGFSAEFSDHRQYNPGEPLKDLDWKILAKTERYYVKRYEEETNLRSYILLDHSKSMFFSSGKSTKIEYATQLAGALAWLMISQKDAAGLYTFNNKITSAFPPKAIRSYTSQLFAALLDLKAEDQTDLLTPLHQIAELVKKRSLIIIISDLLDEPERIMEALKHFRARKHEVLVFHIIDPKEEKFDYKREAQFIDSETGEKITVSPWQIRKEYVENFHQFAEYLKRECYKNQIEYNPVDTYTPIEDLLLKYLIKRQKG
>NC_020449.1|WP_015423801.1|23655_24507_+|fumarate-hydratase
MAYRYVSHETIRSELANALKHITFNPDPELPALLKSALANETSEISKDILKCMLKNIELAPKIEIPLCQDTGSLVVFAEIGNHCIINGPPLPEIINETLIKTSAELYLRPSILKDPLLQRENTGNNAPAVIHISIVEGDKLKLQIAQKGGGAENMSQLKMFTPSAKVDAIKNFVVETVTLAKGNACPPLIIGIGIGGNFETCALLAKKALFQTLTAKNPIEQYAILEQEILKSVNETGIGVQGLGGKTTALAVHILNAPCHIASLPVAVNLQCHSHRHIEIVI
>NC_020449.1|WP_015423802.1|24510_25014_+|fumarate-hydratase-C-terminal-domain-containing-protein
MKTYRFTLPLCPADIAPLHISDKVLLTGCLFTARDVAHKRMVDILKRGEKLPLNLAETTLFYCGPSPARPGNICGAIGPTTSSRMDIYTPLLIQNGLRVMIGKGERSIEVQKAIMDFGAIYFVMPGGISAYLSQHIVSCETFLWQELGPEAIHKLWVQDIPVYVAIK

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Crispr_ID: NC_020449_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_2

78926-79013

Orphan

Consensus_repeat	Method
ATGCACCCGTTATGAATACCTATAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_2

>merge|NC_020449|2|78926-79013|CRISPRCasFinder
ATGCACCCGTTATGAATACCTATATTAAAAAAAATGGTTGCCATCTCGACAGGATATCGGGATATGCAACCGTTATGAATACCTATAT

>NC_020449|2|2|78926-79013|CRISPRCasFinder
ATGCACCCGTTATGAATACCTATAT	TAAAAAAAATGGTTGCCATCTCGACAGGATATCGGGAT
ATGCAACCGTTATGAATACCTATAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278742.1\|78147_78456_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423847.1\|80281_80719_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_052293563.1\|80708_81455_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423855.1\|90058_92857_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_020449.1\|WP_044278744.1\|89398_90010_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423858.1\|95682_95853_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274938
NC_020449.1\|WP_015423839.1\|73542_74310_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_020449.1\|WP_015423835.1\|66973_68341_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225191
NC_020449.1\|WP_015423841.1\|76661_77177_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379282
NC_020449.1\|WP_015423853.1\|87405_88662_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279153.1\|77785_78145_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423859.1\|96006_97224_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_020449.1\|WP_044278739.1\|61197_62178_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NC_020449.1\|WP_015423840.1\|74320_76471_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_020449.1\|WP_015423856.1\|92953_95518_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|238020
NC_020449.1\|WP_044278741.1\|77158_77719_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_020449.1\|WP_015423849.1\|82262_84260_+\|signal-peptide	unknown	unknown	unknown
NC_020449.1\|WP_015423836.1\|68356_71617_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|379396
NC_020449.1\|WP_044278743.1\|84294_86628_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_020449.1\|WP_015423833.1\|62427_65625_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015423855.1\|90058_92857_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	7.65456e-53
NC_020449.1\|WP_044278743.1\|84294_86628_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	7.40668e-37
NC_020449.1\|WP_015423858.1\|95682_95853_-\|4Fe-4S-binding-protein	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	1.30661e-12
NC_020449.1\|WP_015423841.1\|76661_77177_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|379282	pfam13592, HTH_33, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.10353e-11
NC_020449.1\|WP_044278741.1\|77158_77719_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.98717e-20
NC_020449.1\|WP_015423859.1\|96006_97224_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	4.51838e-82
NC_020449.1\|WP_044278739.1\|61197_62178_+\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	1.55963e-81
NC_020449.1\|WP_015423840.1\|74320_76471_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.53293e-43
NC_020449.1\|WP_015423856.1\|92953_95518_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|238020	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.	1.13988e-05
NC_020449.1\|WP_015423839.1\|73542_74310_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	4.74615e-108
NC_020449.1\|WP_015423836.1\|68356_71617_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|379396	pfam13861, FLgD_tudor, FlgD Tudor-like domain. This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.	1.75215e-10
NC_020449.1\|WP_015423835.1\|66973_68341_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	4.50591e-11
NC_020449.1\|WP_015423833.1\|62427_65625_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	3.04852e-101

>NC_020449.1|WP_044278742.1|78147_78456_-|hypothetical-protein
MPAIPKDYLKQIKSIVEDIVADIERSNGHYPTDVIDRVFLEIENNYMQEYDSWITLPNGASNEHSVNPYIGSLVSRITGLKVLAYPVKPNSRLIKGYSTLGY
>NC_020449.1|WP_044279153.1|77785_78145_+|hypothetical-protein
MKTNRYLGIYEKTHDHNRWNFNQDKAMILLKEVEATKHRNVRTIAKAIGKSRQWVYIYLEALASIGAIEKVDGYYQIISKERVWAIGSNIKKGILKIERTGANDPVITGSIKAKVVTIS
>NC_020449.1|WP_044278741.1|77158_77719_+|IS630-family-transposase
MAAASLSFQPDDTRPIQVFFQDEARFGRINTPVAYWSPKGQRPTVSKQIVRQYLYAYSAVNPVSGDIFSILAPNCDTDIMSLFIENFSNEYQDYRNIMIMDKAGWHTTSYLKSFDNVRYIFLPPYSPELNPTEHLWAKIRDLKFRNITFNSMNEVMNALIECFEYFDENKDMVSKLTYFKWLNLDV
>NC_020449.1|WP_015423841.1|76661_77177_+|winged-helix-turn-helix-domain-containing-protein
MNRIHVNDTMSADELKLRMCNSKDIQEHNRWQALYMAKAKGLSAQEIADIIGVSKYTVNKWVYNFNHMGEESIFSHSRGGNRTSFLSWQEEEELLSEIGKQAEKGLLVVVKTIKAEIEAKIGRTVSKDYPYDLLHRHGWRRVVPRPKHPKQNAETQEDFKKNSRNTWQPPR
>NC_020449.1|WP_015423840.1|74320_76471_+|TonB-dependent-receptor
MQFLRFFTVFFILLAFFAMLNGIKVTGIVTDEENKPVEAVRLISGKKTTLSKQNGNFTIEITDSLQVSRLGYKKQVLSIQEVIALPKTASGIQIRLQSEPVQLSTYRVFAYLSEENISPADVVTLPIDPDKHYSSASELISQTASFQNYGTQLKGEIAEINILGNISRHTLVLLDGIAMNTLGEPFDFSRLNLDNIESIEVVKNNASVYGGSSAIGGIIMITTKQGSALKKNLESKTEIGSYGYLLQQISLSGISSQNSYRLCLNAYNADNDFPIPKGDLIPEDSANKRKNNSKQQLSFSGAYSTHLSKLLMSISTDYLTFQRELPGPLNFADLYYKAFLEGSSLRPQIRFSANFGNFTWQSNNWLLKDETVYDNTQSLIEGFSQKYKQKNDNYGIKQSLSYNKNSLQASLSGEYVYNRYRYQDLINPFQGKIDYVRNQLAFSLKLNQQKEFAWLILNNGLVGRYDYIDGEDEFSGRLEFSLRNWGTKYLETGATIGNSFALPTPYDLYWKGDSQTLGNPNLKSEKATGYQIWLKGNIPQATLKATFHQNTIKNLIQWRQVQMYGPVWKPMNIGRAEIRNLELEGNYQPLEQLEFTASAVFTKAKDTTYYSFAEAPKLMYRPETLYSLAIDYQPGIFHFWTKYSYTGKQWITPDNLIDPISAYALVDCGISLHWQKGNWKFTPAFTVKNLTDENYMVHAYVPEPGRTFYATLQLNR
>NC_020449.1|WP_015423839.1|73542_74310_+|ABC-transporter-ATP-binding-protein
MIVLKNVTCGYQDFPVLQDISLQIESGEFCALLGPNGAGKSTLLYTIMGYLKPSEGSVTIFGKEIASVKHSWLAKQLAFVPQETRSEFDHTVQETVLMGRYPYLGLLQSYSSEDFDTVDSVLEELKLLELKHRWLSEISGGEKQRVLIARALVQQTPFILLDESLSQLDINYQIEIMKLLKAIHSKENKTVLIVSHNLNLAANYAERLIFLKEGKILAAGKPELLMQKETLKELFTIELDIMQNPHSGRPNIIYP
>NC_020449.1|WP_015423836.1|68356_71617_+|T9SS-type-A-sorting-domain-containing-protein
MKKSFLLCLLICCSAFAFGQWHIDEDFEGITTLPAGWITYDDGDGMTWRNLENASHAHSGTRFAFADNYFPNQNCDWLITPQLHIANGDSLKFYTRAWFDTENLQVYVSTTGNAISNFNTQILNLQGLGTTFQYASYNLSAYAGQNIYIGFKWQCVTYGIIVDDVKIGQPVIVTPELNLPESITFWQGETITVDFTPYIVATDINNIQLTWQTPEHISISATGLALTFSSDNWNGTENITFTLTDNITGLTATDTMQIIVHPIPTVDMALQTILSPGNMVFVNSAFNPTVTVKNNGQILWEDQLEIFFQVYNSQNVLVESVSSYFNPVLQPEATFEAVFPPLSISSEGVYTGTFQINISDNNPTNDTISCVFNVILRVNTGGPDAFGYRYIDSTAENGPDFNWIDISATGTSTIMYGVNAFNGDDNFSEPIPLGFNFPFYGISYSTAYVDINGEILLAPNTWYTEYPDNGWGNDGNMFNYMYPIPGYSAMPGLIAVYWDDLHCEQGTGDIYFQSFGEEPNRYCVIQWHNLRFHAGTGVSTLLDFEVILQENGEIIMQYNSTATGQTGANVPHDNGKSATVALQSADATMGICYLREIVQNNTYIGVEPAGNLLFNGLALRFYSGEDTQAPFITHSAPGNTFNQSPLITARILDLSELNNVTLHYNLGEGWNALEGMATGNGNYDFALPLLPTGHTFSYYFAAADVCGNSSTLPAGAPIEVFQFKILPSENTSVLLAYSGKQDYQNTELPVYIEQLNNANIAYDIYDWEEFAEYTIPNTYSTILAYACTGTASPATLYLSQKLMDFLNSGTIDNPKNLFFSSDGFAFSQSGTPNSHPMKQLLNGYFRTFAVSTGGGGGTNGLAGPDVFSYQSGTIMCTTYSPVGTIGTEYSVYANSPDCIFAYDEVPDWYADLVPYPEIGAMNAFVFEDGPVEGHAYLYHGVCATAVQTPIFRTFYFSFDFSQLNNPAQREELFADLMDWFEVYPTSINENELPIVQSKLQTNYPNPFNPATTIAFTLAKADKVEIVIYNLKGQKVKTLLSDNLLAGNHSIVWDGKDDKGKTLSSGIYLVKMKTGKTIDTRKITMLK
>NC_020449.1|WP_015423835.1|66973_68341_+|helix-turn-helix-domain-containing-protein
MIQNLLLIRNQAQLKEMGSPLKYNILKELIKAPATCQQLATLFGCSKQKMHYNLTQMLSQGLLKVEDEANINNKEVYYRATARSYVLDLAIGLETSEKILDNRNIINSILEQEYRINLNNIADKLLDEALKLTKGMHLLITTGKFNLPLVEKLLVEAGKRGIYTTLIYQDLEQLQARAEQYSLIAFQADYENFNHKLKEADVYLNLNGESRIVEVTDPKKIQIRNRMLEKGRKIIKEKNICLAMMPSLLNDTLSEQAIESEVQFWRALDIDYQMLSDKTLALCRKFVNKNYVEIENKSAAFRFAINNIWAECGSFGKGEFQSPIINLPGGEILIIPKPGSMQGKIIGDRAYALGEEILHPEVEIVNNEITGFSAESNQQQLAKAIETGGKDGRKVALICLGTNDNIRGGNIDNALKHKSSGFISIYWGSNKDVGGDIAGNIEWFIQIENPQLNFL
>NC_020449.1|WP_015423833.1|62427_65625_-|DEAD/DEAH-box-helicase
MARLFAKDYHNKSDSWYFNQAIIVLEKDDLWFWKTRNEDGNYQIRFFPAPSKQEYFAEYVDIVFNPETELIVSHDCSQCHTDESCRHYLSILRYAYLNLSTRIFEEEVVETCDGNALSGNELWLNIARNAVLYVEGIYNPETDKIRFYHQDLAPIDPILMGKLHSQEEINEIPQRQIEYYTANMGAFRDADLHLFSFLNKTRCAYSPKNKFWSIYKSDFAQALLIMQNCHTRFVIRETGEELIFQQQPYQLALRIEPSGTKNYSLRAVIIDELSVWFAGNPTWLFFRNRVYKINLPFRKEIIDHIFGSGEVLTARDLIYYRCLVHRELQEQGIYLDFEESISLPEIIDEIPVKRLHIKKLGDKILIGGSLVFSREREIPLSVLRFGKPLVYSQYTSPDKNGSAWFHLTPELFAKTQELLNKLPEPEMNRLEQYAELVFSGKERIEQLRTAIFELSDQDWDIQIDPELRNYFVAKIPLQVELIARHEEDIDWFTYEVRYHYRDLNFTHEELKRFFRSKEEFLHTSDGRLVFISNPQVFYEVEELLSRSEHKTDQVYRSRMMNLPYYLKLQEDNPAFRMQGDEWLEGFYEALLKRRLEGPETLPLYLQTVLRGYQKAGVAWIKMLAHYHLNGILADEMGLGKTIQALSAILSTTLGQVSLVICPKTLLYNWAAEIDKFHTNIPFAIVDGNKTTRMEILSNPNVQLFIMSYSMVLGDVAYLKNMEFEWIVLDEAQNIKNVSAQRTSAIKKLKSKHRLALTGTPIENNLTELWSIFDFLNPGYLGTLNKFKQNYLPAEGEITARLSLSRMVAPFMLRRIKKDVLLELPDKQEQISWCKLNTLQEKLYLQILDMVHKKLLPEGKEMPSYIHILAALTKLRQVCNHPHLANGDILPELEASSKLEQLLELVTEATNAGHKVLIFSQFVQMLSIIRKVLEANSLPYCYLDGQTKDRVTPIKSFETNPEIKLFLISLKAGGTGLNLTAADTVILYDPWWNPMVENQAIDRTHRIGQTHKVQVFRLITKGTVEEKILQLQQNKRELFETVIEGGQNVLKAMTKEDIKKLFSYSE
>NC_020449.1|WP_044278739.1|61197_62178_+|lipoate--protein-ligase
MLSIFSPSNYAPFNIACEEYILKNFPEDVFLLYINNPSIIVGKHQNTLAEINYEWVREHNIPVVRRLTGGGSVFHDPGNLNYSFLMNESEDFNRNFERYTKPILAVLQELGIPAILEGRNDLTINGCKFSGNAKTNAFGKTLQHGTILFSSNISDLTAALNPREEKFNDKAVKSVQARVTNVSDHLPYPLSLQDFVTLVRAKVRTMYPDIQDYTFSLRDKEEIQALMNSKYDTWEWNFGKSPRYNLCHSLKTKVGIIEFYLLVNKGIIEEVNIYGDFFTNREISELENALCGIEHKPETVAKVLKDMEYKSFFGEVKLEEIVKAMF
>NC_020449.1|WP_015423847.1|80281_80719_+|hypothetical-protein
MDVIGLVQCGAQKKATAAPAKDLYNSSLFKKSKSFVESKCDKWFILSAKYGLLLPEQVVEPYNETLKSYSVKERAIWAESVFEDISKHINSGDKIIFLAGNCYRQFLIPKLQAMGIQIEVPMKGLRIGEQLHYLDVQNQRNNYGK
>NC_020449.1|WP_052293563.1|80708_81455_+|hypothetical-protein
MENDIDLLYEYLRILEIGLNGKRILKLCNGRQILPKQGVYFFFEPGEIRYNKNDLRIVRVGTHGVSIGSKSTLWGRLRAHKGTSKGFGNHRSSVFRLHIGAALMNKYPELFIETWGKGQNANQEIRSKESELEQKVSEYIGSMSFLYLSIIDEATSSSDRAYIERNTIGLLSCLNGNKDMPSTGWLGLYSKNIKIRESGLWNLDYVKYQYDPDFLDVFKEYVSITLGKTSNPDKPLAPPNWKFKINNK
>NC_020449.1|WP_015423849.1|82262_84260_+|signal-peptide
MNRQISIIVYIFLLLAVLPVWAQELTGFDVQRVNRRYEITYRIDNFSWGDRFDVFFFARPDENSAWFKLRALVGQYRNVESSNSYKVLWEPILDLKENRSYQLRLFAVNHRYLGWDYDYNKINEIGLAYPISNLQGVSYLINGAELNSSVPVALPVGSYEFSITKDEVIRGYSEVDVLPFRYIEPELEFQDGTITLTCSEPGSTIKIDGKSQTPVENMNIPIGIHQIEVIPPADVKALGIKSFTETIHIDPFENVVREFSFPYGKLSLTSNEENTEYWINETRYSKIHDLKLNPGTYIVTAKINPTANPGYQLEETFIIVPGSDIKHNFEFKYGFITFNDRFETSSYQIDDNRYLTTPKDVKLLIGDHNYYVFPPSPYKNLSGSFHLEEGDHYSKTLIFVKDPDLVRQDQRQRFFRTTQVLLSHIEVVQIFRIGKADDSEDTASSNDYQSLATGLSINGMFAHSMHYKDDVAQSHLIKYPTTYWGLGLLDNFTAAIAQDNSKPVLCYDWVAGVFGVNMLNDRGTIFGNWEIKATYGGQTLIHPSMKVNGVEYKYVRKFREEKSEDASETDKPDRYISTYSLGQVAMESNLSIGISSGKAGYLYLFGGARYQGDFGGGWYRSDDIHNWDTFVSDKPSEVFLPELPKRNVIYDRLTFKFGIGIRLPI
>NC_020449.1|WP_044278743.1|84294_86628_+|OmpA-family-protein
MKNIKTQIYISILCLLLTGSLFCASVNEISFNVRQLREFLTYTPDLDGQILSAADSLVIQNRKAEIQQEINALLASSRERYTVEDITVLGYLQDQGVLSIENREFKRNMKIRMSQEEAEVVTSHPGNFYLEALRELDQNLSWVYYNWTLKGYNTIYYEEEEEINNIPEIELVSINPETMFDISYQLYKQNQTAKTALENYQDGDYRVSLNQFLAEVRTGDMPATHYFWIAMNYLELGEISNAKYYLEQYLQTFDPNYVTIAQHYLDLIAEQENVFRRVQVNENPIYLSSDEGESHFTVSPDGTYLYFCSGRPAAFAKTNIWRAERLNNSWAYPELVEALSTNSDEALCSFSSNGMRAYLMGKYEQGRQDYDIYTSDDKNGWTSPVRLTAVNSDQQEIDPYVYQDRLMLFSSNRPGGFGGYDIYLSIYNDGSWQRPFNLGANVNTAGDEIAPFLDWDGKTIFFSSNGYRGFGGYDIYKAVVLDGEAKTWSRAENVGAPVNSAYNDRAFYHLRNSNEAILLSDRARRGVLGIHPLSLEYAPRSYFIKDSDGQVKRVQDKDNTSPLSGLLTQEVEEEYLEIWGTVLNDKNVPVQAELRFSYDRDGIHYHDLARPDEQGNYSIYLPVSKEYILDTNPSGYSMYSTRIKPPSQSSRVRQDLRLEPLDLDKVFVFSNIQFDYDSAVLKAESYPILNEIALTLLNNPTIRVEISGHTCENQGGEKYNTTLSENRAAAVLSYLKGKGVNANRMISVGYGLSRPLNNNLSEEDKALNRRVEVKIIK
>NC_020449.1|WP_015423853.1|87405_88662_+|T9SS-type-A-sorting-domain-containing-protein
MKRSHYLFITIWLMAMAALLGAQETPQIVDVDQLPFSVGDVSDAVVMGNFCYINTCLPFYLVKIDLLTKEVIWQQPNSYTGSPGYSLVKTPDGNLCYSDGSEIVKITPNGDICWSRDLSSYSSCISISNTSNNFLTCYGNYSNLILLNYENGAILGNWAIPTGGNHYSYHFAIASSDSIFYCFDNTSHGTTSNTAIKLTKVQINTAAEVIWSFEVPDLLQPVGLVDDNIIYFGGQQLDPWTNTLLYKIEDMGDNYQLVSTTDIAGPDTTAHVHHLLLNNHELLLSCLIVLGDDPNGQDGSALSMFCYNQNMNLVWQISQNILPFFVTQAVALSDDAAKLYAISIYRQTYSGPDTNWLTEISLPTPVTDPVLTPNINDVCYPNPFRNSTTIKFEMNSPASTSIAVYNIKGQVVRHLVQS
>NC_020449.1|WP_044278744.1|89398_90010_+|hypothetical-protein
MKERVCLILGLAAILLMLSACESGGKLQVFNRCSYPAYIKVENMEQKTIPAGESVSINIDTDTQNIFTGEVKKKLPIWLVGETFSIFDEYQNAYLDSTWIEVKAGKTYSIYLNPNRASVKVINNSDQIISWAEIWQHSPLTYYQVGVMYNILPGESRFLRVDYGNKYYYQVEIYLPDESHYTFGDSENILAVDEQYVVNFNPN
>NC_020449.1|WP_015423855.1|90058_92857_+|insulinase-family-protein
MKRTYLGLILLCCILTLSAILPPEYASFPLEQDPDVISGTLDNGLKYYIKQNAKPEKRLELRLFINAGSVVEDDDQLGLAHFVEHMAFNGTKNFPRTEMVDYLTSIGMGYHNGLNGGTSYDYTVYEFKLPTDDEAKMRKGISILSDIAWQVSFEPAEIERERGVVMEEWRLGQNAQRRIQDQIDKVRFAGSRYAERNPIGTIENLKNFKHESLIRYYQDWYRPDLETVFIVGDYDPQKLEGLVKEYFGVIPKRENPRPRINYPVPDNIEPRAVTVLDKEQPYTMIRSTWKVKTTPVTDLGSLYNEMKQDLFFTMINARLEELSQQPDPSFSYAFMFNATWLKGFNATDCFMLANEGRSEDAFRTLITELTRVRQHGFQPGEWERAKQIMIRQAEKWVADKPTMDSEDVIWELLDAVMSEDTILSAETYEQMLKGLIYEIGLSEVNDIVDDVITSENLTLSLAGTDKPGAKYPSREDLLNIYQQSIAQELEPWEDITVNEPLLETIPIPGKITKEKVFPKSGIKQWVLSNGITVYSKKTDFKADEVILIAQSPGGKAKLKPENYKSADLLSQYFSVSGFGNFDAPSLQKALAGKIVYVYPTIYSYSEGWRGSCSPQDLELMFQMLYQYNYAPRYNEEAFSAAVASTRARVQNYLLEPSNAFFDTLNVLMFNNHPLKRNLHPEDLDSVTLKQLKDIFQDRFGDYTDFTFYVVGNFAEDQLKDYCQTYLANLPAKGRKEKMTDAGVRAFNGKKEISFNKGTERSFVSNVTNNKASFSPQNNVQQSALQMIAYEKLRENVRENMSGAYVVEIQSFYDFLPKPGVFTLTLMGCDPERAKELNAAIFATLDSLKNGLFADKYIESTKTTLHKKYEENIKSNRYWVNNMSENISYGLPIDCFLDYPVLYDKLDKKAITKTAKQYYVFDKSLLSVYMFPE
>NC_020449.1|WP_015423856.1|92953_95518_-|T9SS-type-A-sorting-domain-containing-protein
MKRLFLILFITTLISLNFAIQVSGNQSGVWSPVNNPYEVIGAITVPASDSLIIQAGVEIHLLGSYQITVEGILNAYGTEVDSIRILNMQANPTALWPGLRFENLQHTSHLNYVYLEYATYGVRTINSPIAISHCHINLCEKGMEFYGIGSAVPLPNVVEYCLIENCTQNAILVTSNSNAYIRYNEIRYNGTGAQFRAAIQMGNQSGVNQCNPNILYNHIHHNYKQGISAWDIASSGSINPQILHNIIEYNYTGIYLLQASGYVADNQINYNFIPGDMNSGAGVMVSGVTSVPYFERNHIEGNYTGFYITNNGKPVLGDLTLNHIWAQGENTIINNIDVNNHNNSVYCDAYPNASFIIMAENNNWGFATAAEIALTINDHNDNSALPTVDFEPFIIPVQNTIITGSYIYTGTAQITNARLELIAVANGIVQVSIPLPTADFSVQANISEDFYAQVVLTETGTGKELYGCAGGYINPGVFSPAPGNSVYIGIVEVTDIPLSRYEYVGEPNQEGNLTLYPLLTGWGLYSYDKLDWVYPAGDYLYLKRNIWRTPAGEVTTELPLGTVYKKYLNINAGDSWQQTEVIYPGNITFTTDVQVTNCVTDISTPAFLLFTRKDSFGYVVDKRIKGIAEELFHYQNHYNIARENIIYLPGNNDPLTTGNVTLFMPEPLSENPSFLAFEPDIDDQIHLFWQAPAQGNLSWTSYRIYKNDALIGEIPFSQSDYIVTDFNPQITTYFYVTATDGINESEPSNCVTVYYVGNEDLIQKPMCVDVYPNPVSFNSGSALIVEVKNAENSSALIEIYNLKGQLVFRKNLQDEKNFLWKGIDNRGKRSSAGIYFLKIKVQGEKPINRKIMVL
>NC_020449.1|WP_015423858.1|95682_95853_-|4Fe-4S-binding-protein
MAVKIDKETCIGCGACIDVCPVSALKLVNDKAECDESLCIDCGACIDTCPVQAISQ
>NC_020449.1|WP_015423859.1|96006_97224_-|ABC-transporter-permease
MSIVGIIRIAFKSLARNKTRTFLTMLGIIIGVAAVITMLAIGQGAKKIVEDQISSMGTNVLMVTVNFTRSSTNVRQAAGSGSLLELDDVFAIRSQVEDALYVSPVYNSFAQLKFESQNWRTGVMGVDTDYFYIRNMNPEQGELFYDSDVENGTKVCVIGKTVAENLFGDIDPVGQIIRIRNIPFTVKGVMESKGQNVMGADQDDSVWAPYTTVYTRLLGRRWRNMMIIVSAVSKDKIAKVQQDILDLLQSRHRGTTSEEFLVRSQTDIAETASKVSDTMTFLLASIAGISLLVGGIGIMNIMLVSVTERIKEIGIRMAVGAGKRDVLLQFIIEAVTISILGGFIGILLGFGASKIVGNAMKWSVVVTPFSVLLSVGFSMAIGIFFGWYPASKAANLNLIDALRYE

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Crispr_ID: NC_020449_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_3

226242-226799

Orphan

Consensus_repeat	Method
GCTAANGGACTAANNTCACTTATCTGGTTA	CRT

8 spacers

The CRISPR arrays of NC_020449_3

>merge|NC_020449|3|226242-226799|CRT
GCTAAAGGACTAAGGTCACTTATCTGGTTATATGAAAGATTCAGAGACCAAAGATTAGTCAGCCCGGCTAAAGGACTAATATCATTTATCTTGTTCCAACCAAGCAACAGATATTGCAGATTAGTCAGACCCGCTAAAGGACTAAGGTCACTTATCTGGTTATTTTTAAGATTGATTACTCGCAGATTAGTCATCCCGGCTAAAGGACTAAGGTCACTTATCTGGTTAGAATGAAGATACAGCTCTTGCAGATTAGTTAGACCCGCTAAAGGACTTAGGTAACTTATCTGGTTAGAATAAAGATCCAGCACTTGCAGATTAGTCAGACCCGCTAAGGGACTAATATCACTTATCTGGTTATAAGCAAGAATCAGATTTTGCAGATTAGTCAGACCCGCTAAGGGACTAAGGTCACTTATCTGGTTATATTGAAGCAACAGATATTGCAGATTATTCAACCCTGCTAAAGGACTAATATCACTTATCTGGTTAGCATAAAGCAACAGCTCTTGCAGATTAGCCAGACCCGCTAAGGGACTAAGGTCACTTATCTGGTTA

>NC_020449|3|1|226242-226799|CRT
GCTAAAGGACTAAGGTCACTTATCTGGTTA	TATGAAAGATTCAGAGACCAAAGATTAGTCAGCCCG
GCTAAAGGACTAATATCATTTATCTTGTTC	CAACCAAGCAACAGATATTGCAGATTAGTCAGACCC
GCTAAAGGACTAAGGTCACTTATCTGGTTA	TTTTTAAGATTGATTACTCGCAGATTAGTCATCCCG
GCTAAAGGACTAAGGTCACTTATCTGGTTA	GAATGAAGATACAGCTCTTGCAGATTAGTTAGACCC
GCTAAAGGACTTAGGTAACTTATCTGGTTA	GAATAAAGATCCAGCACTTGCAGATTAGTCAGACCC
GCTAAGGGACTAATATCACTTATCTGGTTA	TAAGCAAGAATCAGATTTTGCAGATTAGTCAGACCC
GCTAAGGGACTAAGGTCACTTATCTGGTTA	TATTGAAGCAACAGATATTGCAGATTATTCAACCCT
GCTAAAGGACTAATATCACTTATCTGGTTA	GCATAAAGCAACAGCTCTTGCAGATTAGCCAGACCC
GCTAAGGGACTAAGGTCACTTATCTGGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278765.1\|212386_212761_+\|DUF4810-domain-containing-protein	unknown	unknown	gnl\|CDD\|379760
NC_020449.1\|WP_015423973.1\|238293_239079_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NC_020449.1\|WP_052293585.1\|219784_220234_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423965.1\|230264_231599_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423963.1\|214230_219783_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214510
NC_020449.1\|WP_015423957.1\|205605_206484_-\|DUF2156-domain-containing-protein	unknown	unknown	gnl\|CDD\|227203
NC_020449.1\|WP_157859982.1\|207095_207257_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423960.1\|211458_212403_+\|curli-production-assembly/transport-component-CsgG	unknown	unknown	gnl\|CDD\|367655
NC_020449.1\|WP_157859984.1\|240356_240650_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423971.1\|234995_237974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_020449.1\|WP_015423969.1\|233059_233521_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423970.1\|233508_234996_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015423968.1\|232368_233025_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278763.1\|206487_206904_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_020449.1\|WP_157860032.1\|239075_239894_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NC_020449.1\|WP_015423959.1\|208061_211262_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|227282
NC_020449.1\|WP_044278766.1\|212772_213459_+\|DUF799-family-lipoprotein	unknown	unknown	gnl\|CDD\|368539
NC_020449.1\|WP_015423976.1\|239991_240342_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278762.1\|203905_204913_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_020449.1\|WP_157859983.1\|237958_238309_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278765.1\|212386_212761_+\|DUF4810-domain-containing-protein	gnl\|CDD\|379760	pfam16068, DUF4810, Domain of unknown function (DUF4810). This family of proteins is found in bacteria. Proteins in this family are typically between 117 and 134 amino acids in length. There is a conserved PES sequence motif. It is a putative lipoprotein.	2.84115e-28
NC_020449.1\|WP_015423973.1\|238293_239079_-\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.73678e-30
NC_020449.1\|WP_044278762.1\|203905_204913_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.06775e-05
NC_020449.1\|WP_015423963.1\|214230_219783_-\|PKD-domain-containing-protein	gnl\|CDD\|214510	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.	1.77165e-11
NC_020449.1\|WP_015423957.1\|205605_206484_-\|DUF2156-domain-containing-protein	gnl\|CDD\|227203	COG4866, COG4866, Uncharacterized conserved protein [Function unknown].	5.01446e-38
NC_020449.1\|WP_157860032.1\|239075_239894_-\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.05533e-32
NC_020449.1\|WP_015423959.1\|208061_211262_-\|S41-family-peptidase	gnl\|CDD\|227282	COG4946, COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown].	2.39608e-131
NC_020449.1\|WP_044278766.1\|212772_213459_+\|DUF799-family-lipoprotein	gnl\|CDD\|368539	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.	1.17403e-16
NC_020449.1\|WP_015423960.1\|211458_212403_+\|curli-production-assembly/transport-component-CsgG	gnl\|CDD\|367655	pfam03783, CsgG, Curli production assembly/transport component CsgG. CsgG is an outer membrane-located lipoprotein that is highly resistant to protease digestion. During curli assembly, an adhesive surface fibre, CsgG is required to maintain the stability of CsgA and CsgB.	3.26484e-25
NC_020449.1\|WP_015423971.1\|234995_237974_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.88145e-07
NC_020449.1\|WP_044278763.1\|206487_206904_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.40591e-13

>NC_020449.1|WP_052293585.1|219784_220234_-|hypothetical-protein
MVNTTEYLYSFNPILEPYTQYYWRVRVISATEQIWSGMWSFTTGAYGAGNTSMLEPVPVTLAINALQNQVRLSWQRRRDEESYYVYWSENPYAEFPEGWNGPVNVTETSFTDTLSNKCFYRVFAVPNMRGEIENKQNTKPRAIMPKRGE
>NC_020449.1|WP_015423963.1|214230_219783_-|PKD-domain-containing-protein
MAKRKFVILLFIIAAVLVSAQTIPYPVTSKEYQDYKEGLIGKIPVQPPVYSNVPKGEQIPLVFQRQQREGLLIPLDDSFQLAMEGNDDYYTSVIQLPFAFDFYGTTYTEFYINNNGNVSFGNPYSTYTSYGFPVNGFPMLAPFWADVDTRSGGQVFYKMESNRVTVIWNAVGYFSNHTDRVNTFELVLTNGWDPVVGLGYNVAFSYADMQWTTGDASGGENGFGGVPATVGLNKGDGIYYGLIGRFDHEGIDYYGPGGAPSGVSYLDNQLFRFTAIQGNFLPPVFGNLPAETVNIQEGESIQLHINASSPAPENTVYAEVQSDFTAGFYADILSGNPCYINLTINGLRNNVGLHTITITAIDNGTPSLSTVASFSVRIIPRLGDFLIVTNHNSPSINMVDVATNEVFGPFLQGQLGYSYLVDVVVSSDGHFALVSNFNNDTVYQIDLSNLLEPTIAASYNLGFPAEDITLSVDNRYAIVADGGPSNTYIAVLDLQSRTTVQVLDIYPHCAQGVTIGPDGKVLINDCTNGYVHQYLLNFATGNLSYSGVSIPVASCLNTVISPGGNFAIACSHNSDTKVLKLNADNTIDVIQNLGVSSQSAVYSSDGQIALIGEYSSSNDILAEYNVQGNGSLVWQQSFNLPFYSEGGYYGVDVLALSTDNSKAYIADFDAEANNILVNINLENGTQQNLTLPDPTGLAMGTMHLTAYFTATITNTLNSTQVQFHQHCSGNPDSYLWNFGDGQTSTEPNPYHIYYTPGLYTVTLTVYKNGESDSYSQTIEAMFNTQIHLTLDGSPYYYSATLAISEGSSLIIDNGVIVNFGPQAGLEVWGSISANGATFSGSETEGWKGIVLHSPVSPVTFNNCNIYNAVVGLKIINSSFTITNLLISKTQIFTGEIGLKVQGASNMVLNNVQVIGYSMGIVFENEARVASSPSLNNTRIRNTSSTLRTESHGLDVLGAVGLTVNNVDIQEYDYGVYWNGLGTTDYRSTPSLNNTRIRNTSSTLRTVAKGVKMIDISRVTMTNDSIIGYPTGLEITNDGSGLLTTTASLNNTRIRNTSSTLRTETTGINFSGHILATMESLDIDEYSTGIYYEGNGMFSDRATVSLNNTRIRNTSSTLRSVTKGLVMMNIGSVTITNDSIIGYPTGLEITNDGSGLLTTTASLNNTRIRNTSSTLRTETKGINFNGQILATMDSLYVEDYTTGIYYEGTGMPFNRTTPSLNNTRIRNTSSTLREPLKGVVLKNLAGITLNKNIIYPKVQVGQGNLSGNGIFLQTVQNAQIAHNTIWGLNTGLYATGSSNGTFTHNVIWTNGEQLNTPVILEDSNIPVSNSDISYTQGVFPGTGNLNADPLFVAPDEGNFYLKPRSPLANQGIGAMPFDFEVLAGVRTYTMHPGWNMMGVPYLTRETYSTPVSIFADDLSPFYVAPTYTSIVQLNPSAPPDTLGHIDMSYTGSYVIPSLVRPGIGYWVRNPYATPATIDVYGLMDDGSYNVVLDGTESPNNGWYLLANPYDLPIGLNNGIILGEGILVGLLKYNYVTNSYYFIDSEHPEVIEPWSGFFVKARVQDAHLYLNYPSQARQENENQPFVSDIPNVVSRPKLKWEFSLSAKAGEKGDAIILGVGEGAKDTLDPLDIPEIPNPPFPQTGILQFSICNNDWENNAGLYTRDIKNSRDGSWSWNLLLNLENMLEDGIFSDIIRISALGAEKIPAGYIFRIVNPADGSSVDLRNEDFLLNVEIFHSEGEPWLIPLCLEVIPLANDSGEREVFSASNYPNPFNPETTISYNLPAESFVTLEIYNLKGQLVKRLVSENKPSGAHKAVWNGADQQGREVASGFYFYRLKTKDNQLTRKILLMK
>NC_020449.1|WP_044278766.1|212772_213459_+|DUF799-family-lipoprotein
MKRIIYLFLFPIVLLYFSGCAYQEYTLLDAYPNLYENPPASILILPPVNKSTAVEAKEYFACSLSEAIGSKGYYTFPVEAVFTVLRDEGLYDTEIYTPELLTNLYKYFQADAVLLTSIEKWDKTWFLTSGNLQIDAKYTLLSTTTGEKIWDFTSHTDVELTSSSDNLLVSMLESAIKTAVEDYFPNCLAANKETMNRGLPYGKHHPLFGTDTAYSIPPGKTVDIKINK
>NC_020449.1|WP_044278765.1|212386_212761_+|DUF4810-domain-containing-protein
MFVNNKKANLRKFLGLGILIVLGGCAVSPPYVYYGNTSHNYYRYVKKRDANSLEQYKKSLEYVFDYSEKKGIKVPPGLYCDYALIMLTLDHNDLAKEYFQKEKDNWNESQPLMDFLLQRYHLKE
>NC_020449.1|WP_015423960.1|211458_212403_+|curli-production-assembly/transport-component-CsgG
MTKILYFLCIGALLISACAQNQAPAKVEVVNLMPAEKQITDEQIHLKKKIAIGRFTNETRLANSFLNEGSNTGSRMSKAANDILASKLAITNRFILIERQDELILDINQQVADIAQYHIPADYIILGSITEFGTSNTGNVGLIDRTKKQTAFAKVNLRILDTHTGRVIYGEEGAGEASTSTSTVLGMGSQAGYDTSLADKAIDAAISSVIDNIVAKLSQDKWRSYVLQQENNQLIISGGEKQGIKVDDVFSVYQRGKTVMNPQTNIPIELPGNKIASIKITKLIPGDEISEVSYAEIIEGQVVGDLSSLYVCEQ
>NC_020449.1|WP_015423959.1|208061_211262_-|S41-family-peptidase
MNAYYRQPAIYKDQVVFIAEDDLWTFNLKDKVARRLTANLGMIRYPQFSPDGKQIAFTSTEEGTSEIYIMPSEGGEAKRLTYLGAYPYTLRWKGSKIIFASQHSSPLQHYNLYEIDSEGGSPVELPYGRATHISFGEKGVVLGRNTGNPARWKRYRGGTAGYLLVDKNGDGKFKKLIDLKGNFAHPMWIGNRIYFICDHEGIGNIYSCTPEGKDLQKHSNHKDFYARGAYSDGKSIIWHAGADLWLMDIKENKPRKLSFAYSSPMVQRQHKFVSPPKNLEDIYLSPDGGSISFALRGKALVSGNWEGSVQQYGFKQGVRYRLPQILPDGKHLLLLSDEPGYERFEIHPLRKDFEKVSEEVVIIDNPDLGRVTNFVPAPKGSLVAIENHRCELIVLDLESKEFKNIDRNGFGLIWAFNWSPDGRWLTYSINRDRNTRHIIIWDSQENQSHIVSKPVLNDTVPVFDPEGKYLYFASVRNLNPLRDSIQFDFIYPNSYKPYLIPLRKDLRSPFIPESKPFETKPEIPKKEDKIEEKEQKEEVKPVEIDFDGICDRLIEFPVQPGIIGGLGAIKDRLFYVNVPLEDSMNEESKFDLMCYDLNKLEGWTYAKDITDYDLSQDGSAILIRQKDKVRVISAKLEPKAELPADATPGKKSGYIDLNRFSVEIVPIQEWQQMFKEAWRLQTQHYWVEDMAGIDWQKVFDRYYPIVERCACRSDFSDLMWEMQGELGTSHCYEFGGDYRQSPNYRIGKLGIDYRYNARKKGYEIIRILKGDYWLSENRSPFMNPGLNVSEGWIIKAVNGIPVTKTIPPERLTLNLAGQQVQLTVSSPDNKEEKVVTIPTMKDELQARYRDWVEANREYVHKVSKGKLGYVHIPDMQKDGLIEFHRYFLAEVDYEGLIIDVRNNGGGSVSGLLLQKLARKRIGYDKTRWWDDNPYLDNAPMGPMVCITDEHAGSDGDIFSHSFKLLGLGKLIGKRTWGGVIGIWPRHWLVDGTITTQPEFSFWFKDVGWGVENYGTDPDIEVDIMPQDYVQGKDPQLDVAIKTCLAEIKKNPPLKPDFSKIPRKTLP
>NC_020449.1|WP_157859982.1|207095_207257_-|hypothetical-protein
MNKEKKRIFKQREKERDSQRGKEKKRNLNNEEKRKREIFTKRKREESRIVNYQ
>NC_020449.1|WP_044278763.1|206487_206904_-|GNAT-family-N-acetyltransferase
MLQVNYKIVQETDTKAILELYQQAGWWQSESSDNDLDIIAKIVANSFCFVIAILDGKIVGMGRAISDGISDAYIQDVTVQKEYRGKGIGKGIMRTLIKFLKENNLRWIGLISEPGYESFYQGLGFKVMTSYTPFLLSE
>NC_020449.1|WP_015423957.1|205605_206484_-|DUF2156-domain-containing-protein
MKDLQLITEEHIPLLQEFLTRYPRRNCDFNLTNLLAWGKIYRNHYLLWQDNLVIFNPKYQNVCFPLGENFTPKDLADLVILFKQEYPEAELIIIPEEYYAKNPELDNYFTVREDRAWADYVYQIDKLVQLSGKKLAKKKNLISQFIRAYPDYQVLPVTSDKFEVLLRFTYKWKRERSAEGIYLMTEIKAIENTLAMWDLLPAEGIIICLHDKIAAFSIFSPQTQDMVTEHFEKFDPEKKGAAQLVNWETAKYLQKRYKYLNREQDLGLEGLRQAKLSYQPEFLVKFLVTNLK
>NC_020449.1|WP_044278762.1|203905_204913_-|T9SS-type-A-sorting-domain-containing-protein
MKRSVLVLILFITIIPAWSNPIVPNLISRFWFEQENVLEIELSAFVGTFQTAEIIYLDAEDSLTIQVNPNAVTVQQINVPQSVNIPASGFFTIRIPQLYEETVHWGTGLENDLSPLNGTQCAVQILYSNLIGDNVYGWAKDVSPAVCGPNYCSARFTYRIECTDLSGLPVAGVSVYNSQSAGGIFINPAITNSAGIATGELYPMKTQIWVNNPITNEIAFNTQFFAEPGALIPFSVQLPVSVEENIVSIPAGKLHLYPSVLNPHWNESIRISYDTKLTGKAELVLYDLKGRHLAEKVYDQNEIEWQLPKLSSGIYFVRLTNQGKALGTAKLIILK
>NC_020449.1|WP_015423965.1|230264_231599_-|hypothetical-protein
MGQYLARCKFSFLFILTFCAGLTLNADWRMDFCLANLGSDGSLISATVYLGESTGAADSFDAFDFPLGPPPNNSPYVCAYFPHNDWGSTYNGNYMKDIRSINPAAKTWNFTFSKSGTPLSNNYRLSWEITGLFPACYQPRLIFNSQNINMLTQSSYSYTGWLYSGSIQMQYNNSVPYQLEPLPELLFSNNLTQELNLNRYFKVGSGTLSFSILPNNNLVQNMVTNQDSVWLNIYPVAGFTGTTFAELTVHGTGGTLNAQISITRDATNSPPVFRDTIQPLEIIQNQQGIFSWNGMVFDPDLDTVTINFSGGENISIEPNETLQQAIVIPALGFKGETNFQFSLADNLHSPVIYTIPVTVLPAVPASPQNLVLQLLPENSLLLTWQTVHTDTSGLPISGLKYKVMLYADSSGTQLIHQYTNLTSPDILIPVESERMFIKVISVNE
>NC_020449.1|WP_015423968.1|232368_233025_-|hypothetical-protein
MYKFAISYYTMEGTERKPQSGVDIRLLRPGQSWPEGKKLIETTPNSGYYEISIEAEADCGFYELWDDHGNPQGQFSGKTCTIGKLDARGLQTNCIYGNHILDGVVTGSKIANAAIGTEHLQNGLLSLSKLQYELQDQNKGVGDNSHSSPAKLNDDKIITHILDKEYPELPHIILTNQCDAFLYIANVKIEKNLVTVLIGISQVYTATDPFYKLLALAK
>NC_020449.1|WP_015423969.1|233059_233521_-|hypothetical-protein
MAVIKGFKLIRWADDGIYYFTCQNGQVEYNPSQKYRIEKKNAYDPTVIHRREAYREDSFDLEAVLAPSEYYGLMNFLLGPGKLYLEYTAYNSINSQFPVTISQLPKCPDDLHEYPTKVKFSMESRYIGSPGYIDFGIIIITDSDETVIGQTQI
>NC_020449.1|WP_015423970.1|233508_234996_-|hypothetical-protein
MPNLFKIDFIQGKTDASDYNQVKHSLEDTATNRAIISLSVSADKLQSVSNYSREPKRLVFECFPTTWIEENILSGNNEHERYISHFEVRVYRDNSLFFTGIIDTSQLSFDVSSGVLKITCYDKIKLLSLFSDLTHYYSLTAGYLPQWILGYFIQDIEQKIPISIPYSNQFTLPTLNISSGSAMTIAHIDFDDLIQFPNPTGGWTYSYDSSGWPGPFCGFRIDTVVNRISFVFAYKKVIKATYPNPATTRYQGRYRGRIYKFFNNICPVVIEYDEKTDWVEDLASLENASNEFIGFYIENGISETTLYTGLVSVGLIDGRSYGSSHYIGHWVEAHFHGNLFPAMLFPGKAYENYNDEQTDNLKALQAMLMLYNATIFSDPEGRIVLKNKDAYTSAIIDIDADDVVSFVSKRGNPEKPEINCLDILAGDTTQLQGRIKDYLIDFHNSKWSCEATIDQLSKYNLSLQSKLRIQNKIYAITELERNYIDDEYKVKAWLL
>NC_020449.1|WP_015423971.1|234995_237974_-|hypothetical-protein
MPDLTFKLVLVTNDASLKLAEVKQEAESTQSAVEKPAAVKITAEQALATIRDVKIAVDGVLQVVGGLVRSMNGLLDASLGQRQAMTLASIAFGEAAGEMGNFASSMQSVTNFEDDKLLSLMSKLSQTFKLNKDEIQQLVPVLLDFTEANKATGMSVESAFDLMGRALNGHTEMLGRYGIELDDTRLKTEGVSYLVEKLGEDYGGTATALADLRLQNVNAWGDIQETVGDMLTTLINPLLQGLHLLMDAYNSLSPVMKGFVAGIVIAIPVIGTVTTAVTALTAAYHALQVAMNPVAGIIGIAVGALSAMGFGLAAASTKTDEVSVAQRSMNDEIKDAQRQVSVEAEKFSLLASRLLELRSATSLTAADKREMKNVIKSLNDNYSEYLGNINLETAAYNNLATALRAVSDALVQKKIAEVYGEKYNAQIRKVAELQIELDEKRADYNAANARMNQLKASVDWEFLTSDQNAMGFNPASYFGNDGEWLKLERRINSFGALTGQLQAAKNDLQQIGQAYRQAMLDAPDLSFQTTGGSGGGGGSTTPNQAAAEAEARRKEALRLMEDLARLRQTETEKIEAEYQRRLALIREFTQEGSEAEQQAIENLDAWKNQQDNEITTKEKDAVQARYKAEIDYFSNLENLGVDSYTALKASMEEYYAWAQQNLPQQEQQLIHAQIAEIDARHVKLLQERQDEEKAKLQELQDIRDEFYSRDLDNIGDSYSKQLLEVDRYYEKMKSKLLEAGYTEEEIERQKQETLKTLRTNYQLQVSSGVSKIFGDLAAAQDKDTERGFKLWKASAIAQGYVDTFSAAIGAYKSMVGIPVVGPGLAVAAAAAAMAAGIANIARINATKFEKKATGGLLTGPSHNQGGILIEAEGDEYVTAKDRVKALGRNLFDFLNFAPLEQVKLAFAGMPVPSVPIPSNLGSYYAAGGTISSGGGMNTLIDLIAALKDEIVSLKQTVMDSKPIIEVNVDPLSNDPVKVSEIADTGKMIRSEI
>NC_020449.1|WP_157859983.1|237958_238309_+|hypothetical-protein
MLGLALCLFLVIDILSVRAVLCQITKEFIMLLKGEYKHLESVVGPKTKILYHIGFGEFPDKDTLIPEYHATVFDLNGYPIDPTKRIVLTYNEYQALLDDPKEKDKIVNQLVTQFDL
>NC_020449.1|WP_015423973.1|238293_239079_-|DNA-adenine-methylase
MNSIISWVGGKRILRKKILPLIPKHDIYCEVFGGAAWILFGKSANKEDWQLSKKSRYTEVYNDINGDLVNFWRYIKQHPEAFVTELNQYLVSREMFDNFMKHEPRTELERAIKFYYNLACSYGSRSKNFCVNQGYKYMPLRNLDKVKEASERLRHVIIEKQPWEKIVSRFDHPHTFFYLDPPYYTKEYLYEREDADAFNQHKELAEVLKQIKGKFLLSYNNDPYIRQLYDGCVIDEVETQYTVSGAFQTETELLIRNYKSN
>NC_020449.1|WP_157860032.1|239075_239894_-|DNA-adenine-methylase
MMDAIIGWIGGKRLLRKVIAPFIPKDITGYIEPFGGAAWMLLYKEKWGELEVYNDLDNRLVNLFLQVKYHPDELIKELDWLVASRKLFGDILKQEGLTEIQRAARFMFLITRSFGSKGDSFGTSQKRGTSSMYNRLERIKELHRRLDMVIIENLSYEKVIEKYDTKSNFFYCDPPYMLGYTYENSKQFSHEELCKKLKGIKGRFILSYDDNPEVLKLYKSFNIKHVTRTKGINRKEGKSEFNEVIIANFDLVESEQENSKIKTKTRDIRGIS
>NC_020449.1|WP_015423976.1|239991_240342_-|hypothetical-protein
MKREPKLSYSQLRQILCLTISNATLKAKLEDFLSGQVAKVSEVELLELISQSEADKELIKIISGREPDEMDALEALEYISAFFVYIRANKERFASWLGSFGLAVTASPNTPSRGSK
>NC_020449.1|WP_157859984.1|240356_240650_-|hypothetical-protein
MSDLTALRNYTLKQGTKMDCLCKPEIAGSSQHDLSGCGVLKEKIDSVHEEIYGNGDSSKSLVTRMARVETNMKILLSVSTSQFFLLLGIAFKMFFGN

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Crispr_ID: NC_020449_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_4

270391-270509

Orphan

Consensus_repeat	Method
GTAGGAACGACAGATACTAACAAAGGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_4

>merge|NC_020449|4|270391-270509|CRISPRCasFinder
GTAGGAACGACAGATACTAACAAAGGGTTTTTAACCCGGTGAAAGAAAGATGGTAGGTAACATATCTATTTGTAGGAAAATGAGTTCCGTAGGAACGACAGATACTAACAACGGGTTTT

>NC_020449|4|3|270391-270509|CRISPRCasFinder
GTAGGAACGACAGATACTAACAAAGGGTTTT	TAACCCGGTGAAAGAAAGATGGTAGGTAACATATCTATTTGTAGGAAAATGAGTTCC
GTAGGAACGACAGATACTAACAACGGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424006.1\|266342_270227_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|143636
NC_020449.1\|WP_015424007.1\|270799_274735_+\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
NC_020449.1\|WP_044278775.1\|264933_265662_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119397
NC_020449.1\|WP_015424000.1\|261189_261888_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_020449.1\|WP_044278774.1\|259586_260207_-\|DUF3164-family-protein	unknown	unknown	gnl\|CDD\|371491
NC_020449.1\|WP_015423998.1\|260178_260628_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278776.1\|276152_277427_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NC_020449.1\|WP_044278777.1\|286020_287271_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278773.1\|259279_259531_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_020449.1\|WP_015423995.1\|258837_259287_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133390
NC_020449.1\|WP_015424010.1\|277423_278176_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_020449.1\|WP_015424008.1\|274989_276156_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340828
NC_020449.1\|WP_015424012.1\|279628_281077_-\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NC_020449.1\|WP_015424015.1\|284023_286021_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227713
NC_020449.1\|WP_015424011.1\|278172_279636_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240533
NC_020449.1\|WP_071818985.1\|263948_264512_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_020449.1\|WP_015424001.1\|261898_263962_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NC_020449.1\|WP_015424013.1\|281073_282414_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NC_020449.1\|WP_015424014.1\|282863_283436_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380311
NC_020449.1\|WP_015423999.1\|260644_261181_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424006.1\|266342_270227_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.72967e-19
NC_020449.1\|WP_015424007.1\|270799_274735_+\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	6.43703e-38
NC_020449.1\|WP_015424012.1\|279628_281077_-\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	2.53933e-33
NC_020449.1\|WP_015424000.1\|261189_261888_-\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	8.2139e-09
NC_020449.1\|WP_044278774.1\|259586_260207_-\|DUF3164-family-protein	gnl\|CDD\|371491	pfam11363, DUF3164, Protein of unknown function (DUF3164). This family of proteins has no known function.	1.03039e-61
NC_020449.1\|WP_044278775.1\|264933_265662_+\|hypothetical-protein	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	5.00198e-15
NC_020449.1\|WP_044278776.1\|276152_277427_-\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.19828e-37
NC_020449.1\|WP_044278773.1\|259279_259531_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.36364e-06
NC_020449.1\|WP_015424014.1\|282863_283436_-\|nitroreductase-family-protein	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	3.14884e-22
NC_020449.1\|WP_015424010.1\|277423_278176_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.38473e-24
NC_020449.1\|WP_015424008.1\|274989_276156_-\|glycosyltransferase	gnl\|CDD\|340828	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. Staphylococcus aureus CapJ may be involved in capsule polysaccharide biosynthesis. WlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.	7.52267e-61
NC_020449.1\|WP_015424015.1\|284023_286021_-\|hypothetical-protein	gnl\|CDD\|227713	COG5426, COG5426, Uncharacterized membrane protein [Function unknown].	0.00145731
NC_020449.1\|WP_015424011.1\|278172_279636_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.14146e-37
NC_020449.1\|WP_071818985.1\|263948_264512_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000165951
NC_020449.1\|WP_015424001.1\|261898_263962_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	6.38272e-18
NC_020449.1\|WP_015424013.1\|281073_282414_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NC_020449.1\|WP_015423995.1\|258837_259287_-\|hypothetical-protein	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	0.00156871

>NC_020449.1|WP_015424006.1|266342_270227_+|tetratricopeptide-repeat-protein
MEHYSKLLPGMVEWTLQKRAEDNVSESFGCGYLFVDVCDFTKLTESASLKGHYGVEIITDILNQYFDLLNEKIMQYGGQIIKFEGDAILAAFPGKEEICLSQMQECLKEFHWELQELNKRLKNKYGSDLSYHSSMGYGQSNVIILGKPNIHYDYFVYSPVMPSLYKLFAQAGKNECLQVKSGIKTKKKAEIYRAELPLQAEKSYDQSFFPPEILQRISSQTFTGELRNAAILFIGITAEKYIHKGDYKTINNYYCTVQEIVYRLEGMINKIDYTDKGLILLISFGILQTHIDDIERAIVCANLINNIESPLKAKIGLTYSNLYVGVLGAKQRCEFGIIGTGVNVSARLMTSAKYGQIVFTKDILPSVQSRFEVQFLRKERVKGIKDELFFYRILRELPEFLSSYKRQYQNKTQVCYQEQTAEIIQKIKDKKINQVLISGDHGTGKSFLSWQILNNFYEENYKIGIFVLDEFNHHDPLILHRKFISNELELNDPLSEPEKLQQYLAEILAERDADILLNALGLQNKETILTDDSGKQIELLLLSLQKSLDLLMRDFDLILLDNIQWLDDLSAQILQKRLEDDNPKSQTLILTTTKEITNYQNKANAKTEFIGLRELNREEVIALIRSQIPNITFQAVDYIYNLAGGNPRFITELCSQILSSFPDPDMLITESNIYDIQNKGLLPYNVENLFIVKYESLSQEAKDILKKASIIGKGFTLNEIFETQSGISQNEIIPVISELQNNEIIDITTLSPEVQYLFNNALMRQAVYSTILLGEKVSLHNRIASFYEEKYGTLANRHSELLAYHFHLGENKEKALHYALIAGDQNQKINNHSEAIYYYQIALQHTTERLEKIAIILSIVDSQLYLGEVEVAIENLETIEPKEISFPELLKKYHFLRCRVYYLNGDYEGVLKYLKNVTDFEGKYGEQIRVYQLDCLYRLFQIEDFSALLKDLKQEFIQQAAKTLNVKAKKPSVSTLLSRFQKIPEDEITEEQKHYLYLLLKLESIAANHFINTGYYQKALKSLLFQYDLAKALKDDLSLRIASSGLGIVYTRMGNLDSAYKAYVEAISIADKISDRFGFAKVLSDMATLHRRMGQHQEALDHFHRSLKIFESLGNLVFQGVVLHGIGEVYLQEGRDTEALKYFRKALKIARQSKDLFGISFEQDAIGDILFNSGKIADAKTQYWKNLKLQQKIGDNEGIAHTYGNLGNVARMEKNLPLAIEYYTKNIKMTAEIGDKDGQGRGFYNLALVYEDLQDKEKAIQFLHKALKCFTQAGSVKFMELTKKRLQENLQQNE
>NC_020449.1|WP_044278775.1|264933_265662_+|hypothetical-protein
MDPNDIGSRLGMLIKSMNLKQYQFTEKFGISANSLDRYKNNERFPDPQFLARLIDAGVNVNWLLRGEGSMFILAPWELGDDIRTTKKVQIVDGKPVLVNDFDTTYIRTSLFPIVAEISAGSPMDVPEGIEPAESVEVPTRYIPYGTDSYVAFRINGQSMEPQILHGDIVLIKKQITWDGLDGKICAVRYETGITLKRIQYDEARRGVALQPLNKDYRIEFIDADQSQWLTMIGPLSLQLRFY
>NC_020449.1|WP_071818985.1|263948_264512_-|helix-turn-helix-domain-containing-protein
MTDYPTSVTRHRSGGVTHPSHRRKKPPMLISRYVERCDRSPGQKKATTVTDYLTSVTRHRSGSVTVVLPVPENYWQRLNMSKNKIRSVWLTVERAAELMSCSTRTVWRYIKRNRIEVHKHLVEQDGYKVMKTFLLTEPSLYIKEMADCRARNLVPAGFIEITLKVDGKDLHSALIYKYSEEDKHEHL
>NC_020449.1|WP_015424001.1|261898_263962_-|Mu-transposase-C-terminal-domain-containing-protein
MSIYDEIDPLTYAELYQSIYPDWKGKQDLLNQIGKDQEIKPKSELVPVPAVTATDSNILDDSIVLEDEPSAPNDPEDEFIDFTPQERVPVKCDNEAKLMGYFCTTVLERLQHSESKGREWELLTKEYNNGSLAPELYALKGKRTERALRIWLERYEQSKQDMYALLHGNRYQKRQRKITELEGKVLLAILLHPNRISIGSALKFLKAKAESGLIDSPSSVPTLRRWVEEWRDDNLAMWEQARRGSKFVAEHIIKTIHRDSRLLSVGEVWVADGHTLAFDILNPKTGKAQRMTMIMVFDWASRYPVGATLAFTEDSQHIQAAFRNGFLNWGALPQYVYLDNGKAFKSKLFHEQWEGHDLAKELGGIFPKLGIRAQFAESYNAKAKIIERFFRTFQEQFERFISSFRGANIADKPATLMRNEKWIKKLYTCEPPTTEEAMQMIGYYIRYVYGITPHRGLDNRKPWEVFNSAPKPQDRLVNPSQLNFMMLSVERKAIRNEGIVLNKLKYWHPALVDHIGKPVVIRYDLADARWVLVYDEADVFICQASLRQAQHPFIQADMQNSKSHKEYRQEYAQIKKLQQLTEQRTQSFVRSNQESVDKLLKSYMNEIPADNNPTFLQAPMIEAPAPGPEEEIARLEQIVIEQEKAIAASQPEQTNTNQNQAVIEGSSEFDPFDNEEFKKMLKTIGIK
>NC_020449.1|WP_015424000.1|261189_261888_-|ATP-binding-protein
MKQGKLVPIHNVRKADECIDFLLKRPRLEMVGLGMLYGRPGLGKTTYASRAAYARGYVYIRLEATTTPKTFAKELLQNLYRSLGRGDYLPVGTTNNIYKQCIQLLLDNEDTVIIIDEIDYAFRYPQLLGSVRDLVDETLAVVILVGMQNAMDRLNQINAYYFDRCNYFYEFEAVSKDDIRMLGTELMNIPCPESLVNYIHFNAAGNLRKAIKIMHMLEVRSKINPIPAMNHI
>NC_020449.1|WP_015423999.1|260644_261181_-|hypothetical-protein
MNEQSIIIDHFVDRFVSYFNLDLICECTGVDRDVVQERLNQLLTGNVIRKVSKYEDIYVTNRGRYNINVATIYCGNWAFDLKACQDICFLLEKNQIKSIRQLASKMQRSRQWAFKYLEALISVDAVGICKSGYYTKDINMICKVGSVIKKGIISEKRAECGIRPQRRRKKTTKTTNHK
>NC_020449.1|WP_015423998.1|260178_260628_-|hypothetical-protein
MTQEQRERKLRQEIHGLRVKKFHWPLEAFKFIIKGLGYGESLRALPEDRLIELKALLLKYRKHGRPQIFTFDRQGKYMFYLMKTAGWTESQLRAFTIQHYSKSHWNLLNQKERRAVIAMLQNYIKQNEKKTKNTTKKEISNGHPQNPQG
>NC_020449.1|WP_044278774.1|259586_260207_-|DUF3164-family-protein
MDTPKTPRAKKPIPTRVDANGQSIPVSIIRPEILKQDAIVTKTINRAIKLHDRIVADKNQFFEDVELYLQQVAEKNGLDWKGNAVLNSFDGKYRVEIRFKERIQFGIELQLAKQKIDECIKAWSADSNVNLRAIISEAFQVDKKGEIAKYRILRLRRYNIKDQTWKEAMELIDQAIQVVATKQYINFYERDESGKFCQIILNFPSL
>NC_020449.1|WP_044278773.1|259279_259531_-|helix-turn-helix-domain-containing-protein
MAPMNTKTAEVLETMSIFNDERNYRPDEIADILRVDRSSVYRWIRDILDPLPAFRTKDNGQLRCAGKDLNDYLTKHKVRPEYE
>NC_020449.1|WP_015423995.1|258837_259287_-|hypothetical-protein
MSNSREFRIKRDNCKEAYLNGKTEPTELAVIFGVSDITVRKWIKSGKWDELFKEENQLDHEIAIARKKALIQALREYAKNPADTAIQSLVSMMKQDQKDRQPSKELNDYIVRFLDQVTDFMIEKGYETLLKQFQGIVLDLAEYLRVRNG
>NC_020449.1|WP_015424007.1|270799_274735_+|M6-family-metalloprotease-domain-containing-protein
MPKQNTCNKLLLVIIALLFALNLKAAMVTNLPVTVFQPDGTKLELLASGDEYHNWLHDKNNYTIIRHPVSGYLCYAEQDRENVKASDLIVGKDDPFRSALKPGINISEKAYKELRSSKFWMPAERDAPTTGTINNIVIFIRFSGESEFGQGISVYDGWFNNGTNSQKNYFLEASYNQLTVNTTFYPPAQNNLVVSWQDSHPRAYYEPYNATTNPTGYNGDTERRNREFTLLQNAVAGIAAQVPSSLNIDSDGDGKVDNVVFLVSGGAGEWSSLLWPHRWAIYDRNVYLNNKRVYDFNLQLKDFLATRGVGVICHEFFHTLGAPDLYHYTSNGIDPAGSWDLMCSDQNPPQYMTAFMKWKYGNWIATIPTIFIGQQYTLNPLTSSTGNCYRIDSNDPNQYYVVEFRKKTGTFESSIPGSGMLIYRIDTTAGDGNASGPPDELYIYRPNGTTTVNGTINSANFSQETGRTSINNTTNPAPFLQDGSEGNLNIYAIGSSAGTTMTFSLGVPTVDFSTNPYTESFDSSTFPPTGWYKQTISGSYGFERVTSGTNPTCSPQAGAGMICYKSYYASSSNSAILATMRLDCSEVQFYSYDFSFYMYRDTGYSSRADKIEFYLATLPDMSGTNTLLGTINRYTGFTPTVASAGWYQYSFNLPLTSSGYYYIVCKAISAYGNNMFLDSFSIKKTALPPSPSVSPSPVNLAENVNVSPNFSWVNGGGYPSHYLFYLGTNNPPSNLINGLNLGNVLNYAYTGTLNYSTQYYWKVVAVSEGGSAQNCSVWSFTTFADPRITALPYSQNFDSVTTPALPFGWSTYVSSTGSSAYVKNYSSPTNYALSPPNCIAYNNFTDTSAELILITPEILTPINILRLKFNAKGLSTGYSLQVGTMSSPNGTFTSLTTVNLTNTMQQYSVPFSNYNGTDRFIAIRHNLGGSNRSIYLDNFYLEEELTNDLAISALQMNGLGVIGEPLQFSVSILNNGIATQNSYSIQLLSSSGKTVLANLDVLEPLAPGQTAVHNLTWIPETEQTLSVYAQVTLISDGYTGNNTSIPSPISIGSYIAEAGTTATGTKTNYLPLSFNQKNSISETIYLASELQMTAGIISAIAYHTNFVQDLSHQAVKIWMKNTPESNLSSGWLSFDEYVPVFDGFVDFPAGSNTIIIILQIPFPYNGNNLAIRVNRPFDNYNYNTSNHFYYTNSASNPGRSRYLSNSSVNYDPQNPSALGSLSNFIPVTGFSVTSYIPAVLAIPQLLIQKNQQGVLLNWNAVPGANLYRIYTSSDPVVWSDIPYAECSQTSFLITNPPDKMFFKIVAVYQAP
>NC_020449.1|WP_015424008.1|274989_276156_-|glycosyltransferase
MKVLIIPSWYPYPQKPTAGRFFLDQAIALSRNSNYEYEILNWGQNEYQLQIRHPFAAVSKIVNYLTAKTETRNITPNLKEIKIPHLTWTSRLFYGNIKALVKKLDSLSRPDIIHSYVTFPAGFLAFRLAEKWKIPYIISEHSGPFPFPEYVIRNKVSKKITLPLHNASAVLAVSRFLQAQILSSCSVQSIVIPNLVDTDFYQPADKEEGKCFSFFSLSILTYAKGVMDLVDAFALAVQKGLDADLYIGGDGYLRSKIKQKITKYHLEHRLHLLGYLTPQQALEQYQKCDCYILPSHIESFSLVLLEAMACGKPTLATDCGGPRDIVTPETGILIPPKKPFLMAEAMLKMKENINNYSPARIREICITNYSPPVICKKITAIYQNILQK
>NC_020449.1|WP_044278776.1|276152_277427_-|glycosyltransferase
MKNVLLIFYYFPPAGGSGVQRGLKFAKYLPEFGFRPVILCADSRFLKQPRDYTLLRELPNKVKIFRTFALDINWFYKLLWGLKLNKIVNFLRRNVFIPDGEILWLPFAIHKLKKIMATNNINQVLVSVPPYSLIFLAKYLKKHYQTKVCLDFRDPWSFGIGRKYLKPPDWVTAIENRWEKEIVTRADQVICVSSVMIEEFRHLYPYLDKNKFVCITNGYDEKDFPVSLPPIRNAKFTIIYTGSFYDELQPDILWQAILELIQEGCLNPRKIAVEIYGRNFRNFVLGKYITDPILNQIVHFHGYINHRNSIQILRAADVLLLYLGSGEAQRAIVTAKVFEYLRSGKPILAIIDSSGAAADILKPANTAFIADSSSIHSIKETLGNLYRLWEKDKLQTEPKWDYIQQFERKALTAKLAEVFSALEQ
>NC_020449.1|WP_015424010.1|277423_278176_-|class-I-SAM-dependent-methyltransferase
MNYMAEATWENYDPEKQADLRIAKLLALLPSDVQTILDAGCGNGIITNKLIAKYQVTGLDISPAALKYLQCPSVQASVTEIPFPDRSFDVIICNEVLEHLDNASLQKAFPELKRVAKKYIIISVPHKEQLEKLYYRCANCGFIEHPYGHLQSFSEETLSTYLAPEFYLKKREIFGPLNRDFIPLLLNIKQRWLKQWFNPASGLKCSRCQQEKFEINKSLLTKGINLLNRLLVHPRPYWYMGLFIRKTQEL
>NC_020449.1|WP_015424011.1|278172_279636_-|polysaccharide-biosynthesis-protein
MSELPKQAGILSATEFFRLAIKAVIGIALAHLLTPSELGSYRQLFLIYTTFSTLLLLGIPQSMLYFLPKAESPEKQNALITRCLNLISLLGLIFALCLLIFRKPIATLFNNPALEKLLILYALYPVFLFVTQFFSSVMLGLKQPFKAATFTIFAIIADFILIVGSAFLTRNLTIIVCGVISSAFLQWLYARISLAKFKAKGTRFDLGSFKTLMSYSLPLGLSSIIGMMSIQLDKFMVSAFFSPEKFAVFSIGATEFPIVGILANSINSVLLPHLSSSNPEKMGILYSGAVRKNTILVFPLMALCYIFAEPAIILIYGKLYAESAIYFRIYLFLLPLRIATYGILFQAFGKTRFVMYNSLFLLISNAILNYLLIIKFGMKGAAFATVIVTWLSVIIYLIQIAKVLKLNLMAFFPLEKIAKNAVLTVICSIICVLIIKLGNSTIPFLLTGGVVFTVAYLFLGRKIGVILDYDVQLVREMLTDLLSRFKK
>NC_020449.1|WP_015424012.1|279628_281077_-|family-10-glycosylhydrolase
MKKGFFILFTILFVKINAEIRSVWVLPWDIATEESIDEVIATAVSCNQNELLVEVRYRADALFDTSKGAYLYPNPEPKSYILEDASFDPLAYILKKAHQKGLAVQAWVVVFNATPREQSYIQQNYIYNNHKDWITYNFNGSQMNIDRQSGYFIDPGIPEVQEYLLNILGNLAGGYPELDGIHLDYIRYPESDLGFHPVSLARYNEYCQNQEEITYNEWRIMQVTNFVENAYFQLKEINPTLQLTAAVVPDIAEANVDYAQDWQSWLKKGIIDRVYPMAYDVQYAKFKKQLEQIKLLQMKEKIVIGLRAWNGNGNSLAVGNGNSYNVKEIAKKITLTRDLGFAGVSLFSYSGLQKGNAFVQLARLSFPEKKEYPRENISPKLNEITFSEPKYPAEAKLTRLNSEIIMHLKIPKDGFWNWELYKDTLLVSNQRFYQKGENREILNIINPQISANLEPGNYIVHLYQEKSSFQYLIPVELVTPNE
>NC_020449.1|WP_015424013.1|281073_282414_-|exodeoxyribonuclease-VII-large-subunit
MENVIIYSVYEITRQVRQVIETSLQPVFVMGEISGFIRHSSGHIYFNLKDENATLRCTFFKGANASLTFQPADGMQVICFGKLTVYEKGGYYNLNVQKMQEAGMGLLQQKFEQLKKKLEKEGLFAAEHKKPLPKYPDRIGIITSPTGAALQDIINIIKRRYPVELIVYPALVQGSDAPPQIIQGIRYFNKTRDVDFIIITRGGGSQEDLFCFNDEALARAIYASSLPVISAVGHEIDFTLADFVADLRAPTPSAAAELAVPDKKDLLNLLASLKKRLDLSVQNNFTGKRTPLLNLQLELAKYHPERVWRGFQQRFDMAEMALNNALKQLPEKRLQFEMKANNIMQQLNSRIELCLAKSKADCNLTWHQLNEKINNQLQCKTNRLNSLSEILEQLSPRSIQSKGWIMAFKEGKLISSIKQVSEGENLSLDFADGIAETTVNKVEKRE
>NC_020449.1|WP_015424014.1|282863_283436_-|nitroreductase-family-protein
MIFDLVYRNRSYRRFHEEKRLTRAQLIELIKVARYIPSAGNLQKLRYFLIYEEDKCDLIFPHLKWASYLKNWNGPEKGERPSAYIIILAPVDSPKMVFIDTGIAAQTILLSAVDNGFGGCMLASVDKREVQNTFSLPEEMEIMLVIALGYPAETVVIEDVAEQGKIEYWRDEKGIHYVPKRKIRDLIINY
>NC_020449.1|WP_015424015.1|284023_286021_-|hypothetical-protein
MLKYVLIVLFALLFSGFLNYRTNPEITKSRRWILFALRFITLFLLLMLLMSPILYYTQHKKQAPQILVLEDISQSMDLKHNSTTKSLHLKPLWQEMEKKFTASGYEVLHKTFANGLEGDKNNTLLSPALTELSRQKVFTNLEGVVLASDGWLRDESLSAVQQLGCPFYVLADSSQNPAPDLAIVNVRCNRYAYRNEPNTIRAEISSQNYSGPAEVRLLMANKIISRQNLKLEKGITANVDFTHKFNSIGFFPWKVEVAALPNESQINNNIYPGAIEVLAEKQRIILISDKPAWDNKFTLDAIATNSRWTAESYLNRNGRLYSGEVLVNKLEPNNLAALIIINNGILNLDNATVSFIQNAYNKGVGILYQGLPVNELASLLPIQKSNITSTYQGFIVPTPVSANYPMLNSLTLNAKDIPPLDYYYVTASPGSEILATINNPQNSPAIVVQTTGTARSLAFATLNLWRWQMQSGDDGYTKLISNCLTWLSNKSTGTYNAIYNNSYFRGEEIRIRLRSEDEIRQSRLDVNPRIRILDKNNKEVYTDFLKREGDEYAITLQLTEPGTYSFEISDKETGKSTKGKFELSETSIETRDYGYNLSLLSWLAKETGGKLLYKSNLNTFNPVPAKPVEQISRKEIPLYKKWYILSLFILTFCAELFLRRRWGLL
>NC_020449.1|WP_044278777.1|286020_287271_-|hypothetical-protein
MKKLALLLLFCLLFLTALNAFNTGKSVFFADSYMLRAKGVEAAYWNPANLQQKKGIDFWIPIMNLGIGINNNSLDLDTYNYVVSRDTLNDIDKQKILNKIDGSLRSALEGNISIVGFAFDNMSLSSSLHLTGKLALSERYLDLLLYGNTDSLYVFDKSTTDAGGLGYVDITFAMGNFTLPYIPKTIPPIRAGFSVSALVGIGNANLDDFFGYFSSSMEGVDVKQDIVLHTGLGGFGQKAMLGLASNITPNLEVGLTLDNLFGKINWFLTTEETTIKVVANDVYAANISEDFYDYANETVDIDSYSTKLSPELRLGTLYKIPWANFSLDYLQGFKTSIATSGIGRFSLAAQFLPWEYLPLNIGVGFGNSQYPWRISYGIGYSSKVVEFGFGLQSVKNLIPGYKTKGIAIGSYMKVHL

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Crispr_ID: NC_020449_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_5

320579-320677

Orphan

Consensus_repeat	Method
TAACGACGGTTTTTAACCCGGCGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_5

>merge|NC_020449|5|320579-320677|CRISPRCasFinder
TAACGACGGTTTTTAACCCGGCGAAAATATATCTCTGTGAAAAATAAAGAGTTCCGTAGGAACGACAGATACTAACGACGGGTTTTTAACCCGGCGAAA

>NC_020449|5|4|320579-320677|CRISPRCasFinder
TAACGACGGTTTTTAACCCGGCGAAAA	TATATCTCTGTGAAAAATAAAGAGTTCCGTAGGAACGACAGATAC
TAACGACGGGTTTTTAACCCGGCGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424043.1\|324428_326999_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NC_020449.1\|WP_015424036.1\|313397_314402_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NC_020449.1\|WP_015424041.1\|319328_320114_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NC_020449.1\|WP_157859985.1\|320149_320326_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278781.1\|316329_318261_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_020449.1\|WP_015424051.1\|333241_333862_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NC_020449.1\|WP_015424033.1\|309966_310296_+\|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein	unknown	unknown	gnl\|CDD\|235517
NC_020449.1\|WP_015424042.1\|321934_324304_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NC_020449.1\|WP_015424047.1\|329291_330362_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NC_020449.1\|WP_044278780.1\|315369_316281_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_020449.1\|WP_015424034.1\|310292_312833_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NC_020449.1\|WP_015424048.1\|330597_331722_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349932
NC_020449.1\|WP_015424050.1\|332465_333254_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_020449.1\|WP_015424035.1\|312832_313318_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_020449.1\|WP_015424040.1\|318270_319224_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|237394
NC_020449.1\|WP_015424045.1\|327661_328426_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NC_020449.1\|WP_015424049.1\|331722_332472_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_020449.1\|WP_044278782.1\|326995_327637_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NC_020449.1\|WP_015424046.1\|328437_329295_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_020449.1\|WP_044278779.1\|314376_315258_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424036.1\|313397_314402_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.40043e-50
NC_020449.1\|WP_015424041.1\|319328_320114_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.83367e-45
NC_020449.1\|WP_044278782.1\|326995_327637_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.13514e-43
NC_020449.1\|WP_044278781.1\|316329_318261_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.39793e-05
NC_020449.1\|WP_015424051.1\|333241_333862_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	2.53034e-13
NC_020449.1\|WP_015424033.1\|309966_310296_+\|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein	gnl\|CDD\|235517	PRK05583, PRK05583, ribosomal protein L7Ae family protein; Provisional.	6.76253e-20
NC_020449.1\|WP_015424042.1\|321934_324304_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_020449.1\|WP_044278780.1\|315369_316281_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.61033e-105
NC_020449.1\|WP_015424034.1\|310292_312833_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_020449.1\|WP_015424048.1\|330597_331722_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349932	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides. Peptidase M20 family, PeptT (tripeptide aminopeptidase; tripeptidase)-like subfamily. This group includes bacterial tripeptidases as well as predicted tripeptidases. Peptidase T acts only on tripeptide substrates, and is thus called a tripeptidase. It catalyzes the release of N-terminal amino acids with hydrophobic side chains from tripeptides with high specificity; dipeptides, tetrapeptides or tripeptides with the N-terminus blocked are not cleaved. Tripeptidases are known to function at the final stage of proteolysis in lactococcal bacteria and release amino acids from tripeptides produced during the digestion of milk proteins such as casein.	1.16309e-120
NC_020449.1\|WP_015424050.1\|332465_333254_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	3.51989e-78
NC_020449.1\|WP_015424035.1\|312832_313318_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.10711e-30
NC_020449.1\|WP_015424043.1\|324428_326999_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	2.5089e-06
NC_020449.1\|WP_015424045.1\|327661_328426_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	3.2612e-90
NC_020449.1\|WP_015424049.1\|331722_332472_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.24571e-65
NC_020449.1\|WP_044278779.1\|314376_315258_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	2.88454e-86
NC_020449.1\|WP_015424047.1\|329291_330362_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_020449.1\|WP_015424046.1\|328437_329295_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	5.21237e-69
NC_020449.1\|WP_015424040.1\|318270_319224_+\|HD-domain-containing-protein	gnl\|CDD\|237394	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional.	2.0309e-47

>NC_020449.1|WP_157859985.1|320149_320326_-|hypothetical-protein
MKREKRIEKSRFRTRVYHSFEAKSAEGNHSFESKSAEGNRKREKGLKDIDNNETRKKD
>NC_020449.1|WP_015424041.1|319328_320114_+|MBL-fold-metallo-hydrolase
MFQTVIIASGSKGNCVLIQTENTALLLDAGISMHRIMECLESYHIESAKINGILVSHEHSDHIKGVGAISRKLKIPVYINRPTLSSCAERLGDVQDRIVLFNTGNSFTIGDIIIEPFVSTHDAAESCNFVFYPVSEPKRKLGVATDLGYPTQLCLLKLSGVSTLILESNHDEKMLMEGPYDWKLKQRIRSVQGHLSNVQAVGLISTLIHPGLKNLILAHLSETNNLPSLAEQTMQDYLNSIRSDIKLFVAEQNRPTPLIEI
>NC_020449.1|WP_015424040.1|318270_319224_+|HD-domain-containing-protein
MAEHISIAEMQQKVNQEISGLYLVAEKELREGKNDFYLRLKLQDKTGTISANVWKDAVKHSDQFDTGDIISIQGTVVNYKGQIQLSLSQLRFADKSEYNIEDYLTRSKIEPEVLCDRFFEFVDKVHQPYLNKLLHLIFDDKEFFNQFLKAPAAKNWHHNYINGLIEHTVSVAALCEFASTLYPVNYDLLITGALLHDVAKVQEYDHRRNIDFTDAGRLIGHLALSDQMVCENAAKILGFPEELLLHLRHLILSHHGEYEKGSVRLPQTLEAIVLHHCDNLDAQATGVAQLIAAIPQNAVWSEYDKLNNRYYKIYRPV
>NC_020449.1|WP_044278781.1|316329_318261_+|T9SS-type-A-sorting-domain-containing-protein
MRKVNKPTIYLAKGNFLFPLAVLFFLLLPVFFSAVSPLQVVPGSGIKDIEDSKLYHFRYHNLVDDYHLSGPKIWAVRFNFKDAYPIADSASFTLNSFKIYSPYPNLEMRVSLWNEQYGGNNELNYFPGVIIPGGNWQNITLSTSPTTITFPEIQNPLRIIWLVMDFTTPLADKYMSASEGSGKNSFYYNNTVQGNEFWQSLFTAGFKCELRVSAIGDFNLLHTDLELLSFSLPENILPGSTVHPSVTVYNHSQYPVSDTLEVNFSDPLLELNQTLQIPLLNINPRDSLFTVSSEGISFSREPSQIKVTLAFKNHPNIIFSARYYNVFGETGSSHLVEYFRRYTFGFSDIPQEASEVHHLLYFPNLADNLSNLFAVQRFNYYQFNSLPKTVVDGYKKFHLQIDANSEELVSAISAAQAKRSFISRSSSNISMPDPETPENLLLNIKLYNDRTTLYEWTASSALNPKFFAGIFEENEFAGGELYSLKRWLVFEGSFSGTLNKRDSVEIELILNTTDLNPSKTYRVYYWLQNPFNSGGQIYYAQYVSLGQSWIVSNSDEYISQPVISVYPNPLVKGNALKISASVFPAVFTVYNIKGQKVFSTGKVFSEISIPADIFPASGIYFLRCEMQDRDKTHKQIQKISIIK
>NC_020449.1|WP_044278780.1|315369_316281_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKMSKKSVLTIGTFDGLHLGHQKVLKKVVEIAMAEGLQSVVISYQDHPAFVLKTHPMPKMLCPAEIKLQEMKKMGIERIELLDFTLELAKTPPLKFLKDYIIPLFQPKVIVMGYDSHFGHLRQGNYDFLCRHSEELGYRVEYVEPLLFEGKPISSSSIRNLLLSGKIEAANYLLGRPYRLIGKVGHSNSKGRKLGFPTANLNLLCPHQLIPKSGIYLSKVIWQENVFFGLTNIGCSPTVKNTGVIEIETHILDFQDNLYGQIMELDLLSYLREEKMFKNVDELKTAIQNDIALARVMLKEFSG
>NC_020449.1|WP_044278779.1|314376_315258_+|tRNA-pseudouridine(55)-synthase-TruB
MPLNAITDKAFLAIDKPSGITSFAVIRRLRKITGSKKIGHTGTLDPFATGLLICCLGSYTRLAGLLEEKDKTYLARMILGIKTATGDPEGDIMQTAPIPEFVSKLDVLAKKARQLTELPVPAYSAVKVNGKRAYELARKGEKFNLPKRPVQIKEVEFLPWEPNKSDELSYRCKVGKGTYIRALSEWLAEQLNTIAYTTFLRRESIGNITLQDAVSLDDLTKDNWFRYQLSYKKVFPDYTCLKLNADDFAKVMNGMDIAHSNENNEKYILLKEENICAIGQRMNNYIHPLMVLK
>NC_020449.1|WP_015424036.1|313397_314402_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MQNIRKELVELISKAENILLTTHISPDGDGYCSALALQRIISFLGKSSLLVTDDDDLSRYNYLQDGKSREKRFHELKEEEQNFSLAVVLDCNSYDRLGERSVLVEKAEKIIVLDHHEAENGLIKAELSYIEPSFACVGEIIFSLLETEINRMPVSDRLFVCNCLYTTILNDTNNFVNTNTDADVFIFASKLVNLGVKPNEQYRYFFLQHSAEELRYIGETLSTIELHYQRKILFMYSTLVMSKKNNIDPESIMNATRWVQGIIGIEVITYLREEKEGVYKISLRSETIDVNRIAVRYGGGGHKQAAGCYFYGTLVEAKDKLLKDVINALECHNG
>NC_020449.1|WP_015424035.1|312832_313318_+|30S-ribosome-binding-factor-RbfA
MKNYRIPRLQAELKKLFNIALSQKLNDPKLAWVQITDVVISKDLHYAKLYFSHYNNPASHDQIRELLIKSSGFLKKQIAGAQIMRTIPELSFYYDDTEDRAAKVDTLLASLRDDFDDEDEEDQDIDIDDILDDDDYFDFDEEDDEEDYDDYEDEEEDEEEE
>NC_020449.1|WP_015424034.1|310292_312833_+|translation-initiation-factor-IF-2
MTIRVHELAKELKISTMALKKHLTDLGVNVKSHMSLVEDEVADKIRLKYKEQIDAEKRAERDRKRLIEMRQAAKAQKSAQEAETIKAEEPVPPVAEPVKEVPKKEEPKPVKEPEKKTPIPVKEKPAEGKPKEKPHKPVPEKPKAVPKPKPEVIPPKTAAPAKPEPRKKQEPSAPSIKPIPTPPSVEIKKEEKKFGKAKISHEELGEKSKHKKAIISSTKKAKQKLIETIEIDEAEISRNIKKTLQKSSKRKKYHREAQYVEDRSNEIVIREFTSVSELAKIMNVSPSDIISKFFMMGQLVTMNQRLDRDSLEMICDEFKVDYRFEDEYGMDIIDKEREQYNNVKEEPRPPVVTIMGHVDHGKTSILDYIRNTNVVAGESGNITQHIGAYQIEINKHKITFLDTPGHEAFTAMRARGANVTDIAVIVISATEGVKAQTREAIDHAKAAGVSIILAINKVDLPEANVDKVIAQLMEIGVYPEQYGGDIPWCRTSVVTGEGILNLIELILLTAEILELKAKRDVPASAVVIEAGMDARMGPFATILMQEGTLHKGDIVVCGAVHGRIRKMENERGAELKVLYPSDVARVYGLSDTPKAGDILNQVDSEKTARNISTERQQIRLEREKYQNKSSLQNIFARIKEEQINTLNIILKTDTDGSAEALADSFQKLSNEEVSVNIIHKSVGGISEADVSLAAASDAIIIGFHVRPSHQARKLAEEEGVQIKLYQVIYDAIDDLQNALEGMLKPEYEEQVIGSAIVKQVFKIKKVGTIAGCQVDKGVIQANCKVRLYRNDVLVTEDTISSLKHYADDVKEVRAGSECGLTLANFSDIKENDVLEAYIVNEVNKKL
>NC_020449.1|WP_015424033.1|309966_310296_+|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein
MNPKILTLMQFARKAGKLVSGFNACERAIDKKDIFLLILALDSSERTREKMKKMAANSGISTSVIETGSQAEISSALGLPLTGVFGIKDKNFAGKIMEYWLSDTERRRH
>NC_020449.1|WP_015424042.1|321934_324304_-|primosomal-protein-N'
MHYYVIHLPLEIPKELIYCSSAEIVEGARVIVNLSGRLWTGICGAKTRPEEDKDIRYKAVIEVLDTVPVLSPELMKLGYWMADYYHCSVGKALFAMLPARLLPEMEANVIWLSENVPEPFIPLKKAIDKSENPVLKTLRKELTSYPLYKRIEEGEELGLLKIERRLNHKDKPRTVNFIIRLQPTLEEDTLPLKQREAWEKIKEEEPSFPMSNISSTISYSAIKALVKKGFIKIEPRRFEPESVSFENSSPLKQITLNYAQVEAIKDITEGFGTFNVNLLYGITGSGKTEVYIELIRHYLSVNKTVIFLIPEIALTPQMVDRFQSNFGQILAIQHSQLTEKDRLIQWQKIKSGEKRIVIGARSAVFAPLPDLGLIIVDEEHEGTYKQESAPRYQGRDLAIVRAQIQNAQVILGSATPALESWHNAQNGKYKLQKIESRPLDYCLPDVQVVDLRDEYEHSLISAPLLEAIDKRLQRKEQVILFQNRRGYSSFMQCLKCGKLITCKNCEISMSYHRDREEMQCHYCGNTIPSPRKCPYCGSYSFAYGAPGTQKIEQNLKILFPEAKILRMDSDSARKRDTYKSMYNRMKNKEVDILLGTQMISKGLDFPLVTLVGIVMADISLNLPDFRAAERTFQLLTQVAGRSGRRDKAGEVIIQTYNPEHYAIESASQQNYIRFATEELGYRKKLYYPPYYRLARILFQSTDLETLKKEMSNMREVLYLLRKQIPMPQLLLLGPSVAPFSKISSYYRYHLIFKAQTVKILQNAIRLFNSLYNCPSNIRKQIDIDPNTLM
>NC_020449.1|WP_015424043.1|324428_326999_+|HEAT-repeat-domain-containing-protein
MRKKVLTAFMLGFMLISTLMGENISSPILSQTKSDTLYLQDFSLLSENDFRELENLLKEQQLNPQDLNFEKDWDLSTWGKSKSFLRSLQEPYYGLGLMQEIREAANKANTDEGFAFLVDLLYKNATDGAGSFPLYLNYKDLYQQEFNKKVKQPKDLFRFYEKALKDIIPVLVNAYSHYNLDLWNKYVFYLFVALRENEDSEAYNAYFNKHNIPLWEEIENQEIKELMELFQEADVLKAAMQFLALCDVIKNEAGKLNYTNKKPIIQECEFGTMVIGTGKDDVYNAKMFKKPLILLIEPAGNEKYTMTLATGAKNYTYLLIDYKGNDSYVNPDIGSLFFALSGLGISYDLEGNDIYRTGDFSFAGMMGIQLHRDFQGTDIYENGFFSQGAAIRGLSILQDMQGNDIYSATCLAQGFGSIRAAGVLLDFDGADNYLLGGKYFHSPLMPNDYLTLGQGVGFGLRPDFAGGLGLLFDKNGNDRYLGGVYAQGVGYWYALGMLIDEAGNDVYNAVYYPQGSGIHLASGFLFDGSGDDAYYSRHGPGQGAGHDWGLGIFIDAKGNDAYSIEGGNGLGLSNSVGIFIDKGGNDRYERNNPQNYGNAVYSRATGGIGLFLDKDGKDSYPDTLMTEGTTWKKGTYGIGRDLDSGKLMSSSTTDSETKKPAEIPMLPPPSPDEPIADIFSAAAEWEVGNAIERVKKAREIMLARADEAIDYVIKNKLDTKSGLEYRALEVLVKENEQFKQLLFDYTDDIDSLKAKNALSLIAGVGDSTLIETLRKHLNNGKYITTCLSLLGSIKSAESVDLLFQYAFHPSERYRYIVARSLKQIGTPEAHNCLKQMANDNSFLVKTLVRKWEEEQQ
>NC_020449.1|WP_044278782.1|326995_327637_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTEEKQIFEDYLRFLGLEDIDHLMARFEHYLHLLYNANRKVNLVSRNIPLERYWVQHFLDSIVALECLDFTDKTVLDFGSGGGLPGIPLKLAVPDFNLTLLDSVQKKARVLREFVDALSLSATNVEASRLEDYAYVAKRPSYDFIVCRAVALEERYFSPLRRLLKPSGMAVFYKAQKLDDVQVLKYEILLDKDYPALGQRQLIGIKQRDLLFH
>NC_020449.1|WP_015424045.1|327661_328426_+|ParA-family-protein
MPKVITVVNQKGGVGKTTTAVNLSAGLAVLEKRTLLIDFDPQGNATSGVGIDKDKVELQIYDALIGRAPIEKTILSTATKNLFCIPGNINLTGAEIELVHEFAREQKLKEALQPILNSFDYIIIDCPPSLGLLTVNAMTAAMEVLIPIQCEYYALEGVSQLLTTIRLIQKNLNPGLNILGVLLTMFDKRVNLSLQVAKEVHRYFKEKVFRTIIPRNIKLTEAPGFGKPIFLYDIRSPGAMSYLNLANEVINRSE
>NC_020449.1|WP_015424046.1|328437_329295_+|ParB/RepB/Spo0J-family-partition-protein
MNEHLGRGLSALIPDNDREQTPQLGITTLPIASIKPNRYQPRKKFDPEKMAELTESIKENGIIQPLIVTKTSSSEYELVAGERRLEAAKQAGLEKVPVVIRSVSKKEQLQLALIENIQREDLNPIEEAIAYNTLVEDFGLTHNQISEIVGKDRATVTNSLRLLKLPEEVKQMLVSGELNSGLARTVLSVPPELQNSFAEYIIKYNLTVRQAEEKAKTFSLANKEEPEKAKTNARTKELERELSNLFCLKVKVQENNGKGKITLVYKSPEELEAFKTILNKIRQEK
>NC_020449.1|WP_015424047.1|329291_330362_+|dTDP-glucose-4,6-dehydratase
MNRVIVTGGAGFIGANYLHTLFADPSFTGKILNIDKLTYAGNLESLQDLEAKYGNSRYFFEQADICDAPKMKEIMHQFQPDTIVHFAAESHVDRSIDGPMEFVQTNLVGTATLLNSALEYYRTLDEEAKKRFRFHNVSTDEVFGSLGENGMFTEETPYDPSSPYSASKAGSDHLVRAWQRTFGLPITISNCSNNYGPYQFPEKLIPLMILNCLAHQPLPVYGKGINVRDWLFVTDHCEAINIIIRKGKVGETYNIGGHNEMKNIDIVTTICKILDEMEPSKKLKSYTELITFVQDRPGHDLRYAIDATKIEKELGWKPAETFATGIRKTVAWYLENKQWWQNIQNNKYRQERLGIG
>NC_020449.1|WP_015424048.1|330597_331722_+|M20/M25/M40-family-metallo-hydrolase
MKNDVVSYFLELVSIDSESGNERAIVDKLKKDLEELGAIVEEDDCASKIEGNAGNLYAYFPGTINKKPILLCAHCDTVVPGKDIQPIMENGRIFTDGTTILGGDDKSGIAEILMAIKQIKEKGIEHPPIEVLITVSEEIGLLGARNFDISKLQAGFGYALDTHQVGEVVIGAPSQISFQINFYGKEAHAGVEPEKGLNAIRLAAEAIALMPNGRIDFETTCNLGIIKGGTATNIVPGLVTVEGEVRSHNKGKLQKVCEEIEQAVISTVHKFNANGAKASFHFELKKEYEAFLIDRNAPVVTLAEKALQNLHLSVDIKVGGGGSDANIFNANGLPMIIVGTGMNNVHTTEEDILVDELYRGTAFIEELIHLYAEE
>NC_020449.1|WP_015424049.1|331722_332472_+|4-hydroxy-tetrahydrodipicolinate-reductase
MAVKICLLGYGKMGKMLAELASDFDCTVVSMIDPNQKDCYQEISEQSLQDADVCIDFSHPSVVLENIHKVLALKKNMVVGTTGWLEHLKEIKQQVQQAGTGFLYGANFSIGMNIFKRLVAEATKAFDRFPEFDVYGWEMHHNQKADSPSGTAIELSKTILTNSSRKKTALFDPAYRKIEPEELHFASLRAGSFPGTHIIGFDSATETIELSHCVRSRSTFAYGALQAAKWIKDRKGFYSFAEMVEEVLC
>NC_020449.1|WP_015424050.1|332465_333254_+|diaminopimelate-epimerase
MLIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLLMPNESCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTITVNLGMPSMLKSAYQVMDFTGDLVEIGNQHFIVWVNSLKDDPHLQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFSGIAKGLLNNEVEVLMPGGIVKINASANGYLLSGEVCQSFQGVYNWKI
>NC_020449.1|WP_015424051.1|333241_333862_+|helix-turn-helix-domain-containing-protein
MENLGKYFLELRLQREYSYQDIWNELRIPENQIKAIEENRFAELGPYGVAKTLVYNYARFLEADVDAVMYTFSSLMPESAKPEFQPAIPVKEKKIMLSTNFMWLIGILLIIIILGSILWYAYNQNWLKMPDFFASKKPDSTAVIIKEEKEETKPDTLRQRLRAISESIPQTNSVSSPKSETKTVPPDTTDYIGNILGDSPVNVPIH

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Crispr_ID: NC_020449_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_6

385220-385527

Orphan

Consensus_repeat	Method
AAAAAGTTCCGTAGGAACGACAGATATTAACAACGGGTTTTAACCC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_020449_6

>merge|NC_020449|6|385220-385527|CRISPRCasFinder
AAAAAGTTTTGTAGGAATGATAGATAAAGTTGAAGGATCTGAACCCTGCGCAAGAAAGATGAACGATAGCTTATTTCTTTTTTACAAACGAGTTCCGTAGGAACGATAGATAATAACAACGGGTTTTTAACCCGGTGCAAGGGGAAAAAACCACTCAACTACACTTCTATGAAGAAAAAAGTTCCGTAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTGATAAGCAAGCAGAAAAGTCATTATCTCCTTTCCCGAGAAAAAGTTCCGTAGGAACGACAGATACTAACAACGGGTTTTAACCC

>NC_020449|6|5|385220-385527|CRISPRCasFinder
AAAAAGTTTTGTAGGAATGATAGATAAAGTTGAAGGATCTGAACCC	TGCGCAAGAAAGATGAACGATAGCTTATTTCTTTTTTACA
AACGAGTTCCGTAGGAACGATAGATAATAACAACGGGTTTTTAACC	CGGTGCAAGGGGAAAAAACCACTCAACTACACTTCTATGAAGA
AAAAAGTTCCGTAGGAACGACAGATATTAACAACGGGTTTTAACCC	GGTGATAAGCAAGCAGAAAAGTCATTATCTCCTTTCCCGAG
AAAAAGTTCCGTAGGAACGACAGATACTAACAACGGGTTTTAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424094.1\|379994_380906_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_020449.1\|WP_015424108.1\|395375_395828_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NC_020449.1\|WP_015424093.1\|379557_379992_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NC_020449.1\|WP_015424097.1\|382370_383432_+\|DUF4837-family-protein	unknown	unknown	gnl\|CDD\|379774
NC_020449.1\|WP_015424106.1\|394104_394608_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NC_020449.1\|WP_157860035.1\|391071_391839_-\|TaqI-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|370568
NC_020449.1\|WP_071818959.1\|395831_396500_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|334031
NC_020449.1\|WP_044279167.1\|381814_382378_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NC_020449.1\|WP_044278793.1\|394621_395371_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NC_020449.1\|WP_015424092.1\|378670_379561_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_020449.1\|WP_015424101.1\|389446_390727_-\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|273080
NC_020449.1\|WP_015424103.1\|391843_393259_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|378996
NC_020449.1\|WP_015424105.1\|393728_394100_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NC_020449.1\|WP_015424090.1\|374441_377963_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_020449.1\|WP_015424110.1\|396595_397096_+\|LptE-family-protein	unknown	unknown	gnl\|CDD\|377341
NC_020449.1\|WP_044278792.1\|386145_388722_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NC_020449.1\|WP_015424088.1\|371937_372837_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|341362
NC_020449.1\|WP_015424099.1\|383428_385174_+\|signal-peptide	unknown	unknown	gnl\|CDD\|274350
NC_020449.1\|WP_015424089.1\|372841_374119_+\|ArsB/NhaD-family-transporter	unknown	unknown	gnl\|CDD\|238536
NC_020449.1\|WP_044279165.1\|378465_378678_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424094.1\|379994_380906_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	1.5609e-168
NC_020449.1\|WP_015424108.1\|395375_395828_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	4.30084e-78
NC_020449.1\|WP_015424093.1\|379557_379992_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	4.17399e-65
NC_020449.1\|WP_015424097.1\|382370_383432_+\|DUF4837-family-protein	gnl\|CDD\|379774	pfam16125, DUF4837, Domain of unknown function (DUF4837). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.	4.48678e-11
NC_020449.1\|WP_015424106.1\|394104_394608_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	2.29599e-74
NC_020449.1\|WP_157860035.1\|391071_391839_-\|TaqI-family-restriction-endonuclease	gnl\|CDD\|370568	pfam09573, RE_TaqI, TaqI restriction endonuclease. This family includes the TaqI (recognizes and cleaves T^CGA) restriction endonuclease.	2.72802e-102
NC_020449.1\|WP_071818959.1\|395831_396500_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	4.59817e-34
NC_020449.1\|WP_044279167.1\|381814_382378_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	8.41414e-28
NC_020449.1\|WP_044278793.1\|394621_395371_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	2.92757e-180
NC_020449.1\|WP_015424092.1\|378670_379561_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	7.51902e-77
NC_020449.1\|WP_015424101.1\|389446_390727_-\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|273080	TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation].	3.55801e-95
NC_020449.1\|WP_015424103.1\|391843_393259_-\|N-6-DNA-methylase	gnl\|CDD\|378996	pfam12950, TaqI_C, TaqI-like C-terminal specificity domain. This domain is found at the C-terminus of the TaqI protein and is involved in DNA-binding and substrate recognition.	1.49648e-27
NC_020449.1\|WP_015424105.1\|393728_394100_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.42602e-57
NC_020449.1\|WP_015424090.1\|374441_377963_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_020449.1\|WP_015424110.1\|396595_397096_+\|LptE-family-protein	gnl\|CDD\|377341	pfam04390, LptE, Lipopolysaccharide-assembly. LptE (formerly known as RplB) is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The lipopolysaccharide component of the outer bacterial membrane is transported from its source of origin to the outer membrane by a set of proteins constituting a transport machinery that is made up of LptA, LptB, LptC, LptD, LptE. LptD appears to be anchored in the outer membrane, and LptE forms a complex with it. This part of the machinery complex is involved in the assembly of lipopolysaccharide in the outer leaflet of the outer membrane.	1.8655e-06
NC_020449.1\|WP_044278792.1\|386145_388722_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_020449.1\|WP_015424088.1\|371937_372837_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	6.21545e-25
NC_020449.1\|WP_015424099.1\|383428_385174_+\|signal-peptide	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.81131e-06
NC_020449.1\|WP_015424089.1\|372841_374119_+\|ArsB/NhaD-family-transporter	gnl\|CDD\|238536	cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.	5.35889e-112
NC_020449.1\|WP_044279165.1\|378465_378678_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	2.48889e-16

>NC_020449.1|WP_015424099.1|383428_385174_+|signal-peptide
MKTILSCKQLLLWLAFFLLLLSACAGPQTTTQRTIIDNSQPNIPSLYYYISASLKHYEGDFLTADNYYHLALEQDFRSYQIKKQILINSAFAFLSKQQDAEITIRQFDQARKEMMFDNDLLNTAYSVYSNANNEEGLAWVVSESVLYYPSTLSFLRKFYLDYSKNKKGDENLLELALKYADNNPEDIILTAKMYTLVNPKRSVSLLQEAYELEPKKETDNLLSEITLQYLGKEEALKKFGTYSYPEDKDRMLYFLQMANRNRRLEVVNTLSPILLNTGDSSLIGELAFSAYLEDKTDILQEISRFLLNKDADPLTDSKVVSFLFAEALFSEKLPEPSIYLDYFNSAQDVQDVILYAMLKRSMQAKSLEKETNILFSEEFVSAVQKRLPENVFSRYLKIASQIKSVEDEDFLQARAELCSYFLQKDLGELEDWTFLLQYYQNEGREEEKIATLRKAVHKFPDNPLFLNDLGYSLLDYPQFIVEGGFLIQRAVALDPTNPYYQDSLAWFYYLTANFSKAVEHITIPMQMKDAPGEISYHIGMILLANQQKEEAIKYFQSALEDDQTPIYQEKAKKALNELKTN
>NC_020449.1|WP_015424097.1|382370_383432_+|DUF4837-family-protein
MRKYMIFLLLLLVLFACSKEGGKIDRYTIYDKVIDHSKPLAMGDDRDVYVFCDSLAWQGLKPFIGSAIEQQIIIVYPEQYFNLVMADIKDVKRLSKYKNLVFIGHMESDLPVSAYMKRVLSQDFIKRVQQTGGELFTSENLNCCDQIVLFLLGKDAKSLQKIGALQAENIFSLLLKRFTNRQGYYAYQGKVIDPSFFDNYPFSLKIPDTYRLYSNDKVGRFLCFLYRARLENREIPDKYISVYYEPMPENKVDLNWLIAKRQEIGKKYFEGDEFDPELVRKEPFTFKKHPGYRLLGAWKNMKYAIGGGFQSYGFWDEKTKTAYIVDSTVYFPAGDKLPVLVELYVISNSLEIK
>NC_020449.1|WP_044279167.1|381814_382378_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTRHLPNILTVFRIILVPVFLYFLFLAKLPANILIALIIFIVACFTDYLDGMLARKMNIISDFGKLMDPLADKLIVLSALAGLCWLPPFQVSIVVFFIIFLRELVITILREIYQKKGIVVPADFFGKLKTVLQMAGIIVAFAFWVFINPVPPLVILIINIWFWFVALITVLSGLNYIITIAKRTNYA
>NC_020449.1|WP_015424094.1|379994_380906_+|quinolinate-synthase-NadA
MKNNELIQEIKHLKKEKNALILAHNYQIVEIQDLADYRGDSLQLSILAKEVKAPLIVFCGVKFMAETAAILNPESTILLPAIDAGCPMADMISLSQLKAFKQNYPGSPVVCYVNSSVEVKAESDVCCTSSNAVKILKSFSDEKPILFVPDRNLGSWAGKQSGKKVITWDGYCLVHQYGFSEEDVLTLKNEYPDYKLLVHPECSPQIIKYADLVISTGGMVDWVKNNDKAIIATEIGLTEYLQHIYPEKSLIPLSPKAICKNMKKTTLENVYNALKYNQYVISVEPNTAQKARKAIDRMLELSR
>NC_020449.1|WP_015424093.1|379557_379992_+|dUTP-diphosphatase
MNILVQKLSPTATIPQKMTENASGFDLFADIGEPIILNPLEWRQISTGIALEIPVGYEAQIRPRSGLSSTLGLSILNSPGTIDSDYRGEIKVILINLSPNPIRIEPEMRIAQIVFCPVISPQLIEAQTLSESLRQDGGFGHTGQ
>NC_020449.1|WP_015424092.1|378670_379561_+|polyprenyl-synthetase-family-protein
MDRKILLKKDMKEKQELVNIILDRFLPRKDEYPKDLHKAMRYSVFAGGKRLRPYLTMTAFEMFNSNIELITPVAAGIEMIHTYSLIHDDLPDIDNDDFRRGKKSCHTIFGEGVALLAGDALLLSAFELITLAELDAKLRVQFVHELAKEVGIKGLIAGQMVDIESEGKKVDKKTLHYIHENKTARLINLSLRFGALAGEAKEEELKILDEYGKLIGLVFQIVDDLLDIEGTQEELGKTIGKDAESAKATFPAVYGIAESHKKAEELTEKAREILAPLGEKALKLDILAEYLLGRKE
>NC_020449.1|WP_044279165.1|378465_378678_+|exodeoxyribonuclease-VII-small-subunit
MSFEESLKELEKIVDRLSTGETNLDELLSLYEAGVAYLKHCQSRLSSAEAKIKILSEQLSSQQVTEGNNG
>NC_020449.1|WP_015424090.1|374441_377963_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MAKQTKATMDGNTAAAHIAYAFAEVAAIYPITPSSTMGELVDAWASEGRKNINNTKVDVIEMQSEAGAAGAVHGSLSAGAVTTTFTASQGLMLMLPNMHKIAGEMLPTVFYVSARSLAAQSLSIFGDHSDVMSARNTGFALIACNSVQEVMDLGLVAQLATMKTRIPFLVFFDGFRTSHELQKIDVIDYETIAELNDPSLVEAFRKNALSPDKPRMKVGQEAPDVYFQGRETSNLYYAKAPAIIAETMEQVAEKTGRHYQLFEYVGSPDAEDIIVAMGSSCETIQETIEWLNAKRGMKLGLIKVHLYRPFCVQSFLSAIPASVKRIAVLDRTKEPGSIGEPLYLDVVSALKNRPELYIIGGRYGLSSKEFTPSMVLAVYKHLAKNGFHGFTVGIEDDVSHLSLPLEETINTVPEGTISCKFWGLGSDGTVGANKNSIKIIGDHTDMYVQGYFQYDSKKSGGITRSHLRFGKTPIHSQYLVAQEDFVACHNQAFIGRFDLLGGIKENGVFLLNSNWSRDEALYNLTRPMQETIINKKIKFYNIDGLKIAEEVGLGGRINTTMQTAFFLISGVLERNEAIALIKDSIRKTYARKGEKVVQMNLEAVDKVNEALVQIEVPETLPDKYMPMKKLVPEDADDFILNVIEPIMREQGDQVKVSQMPLDGYVETGTAKLEKRKVAPSVPHWLPENCIQCNQCSFVCPHSAIRAKLIKEEDLANKPASFNTLKAIGAPGYEYKVQVYIDDCQSCKVCVNECPKSALVMSPIEEERTKGEQVNYEYFETLPNDVLANFKETTVKGSQFKQPLLEFSGACAGCGETPYVKLLTQLFGDRMIIANATGCSSIWGGTFPTVPYCKNKDGKGPAWANSLFEDNAEYGFGMRLAIRSHRKLLQKAMQELMDKNINEELKSAMQYSLDNWDKVNEETKANADKIRALLPKARETACEGCKILLKKVQELQDYLIEKSIWAIGGDGWAYDIGFGGLDHTLALNQNLNILVLDTEVYSNTGGQASKSTPLGSIARFAEAGKNTNKKDLGMMLMSYGYVYVASIAMGANKNQALQAIKEAEAYPGPSIVIAYAPCINHGFDMSLSQKHQKLAVDAGYWLLYRYNPLNKQGGKNPLTLDSKEPTVSVQEFLDSENRYAGLKNIFPERAKELNEGAAVFFKERYETYKKLAEG
>NC_020449.1|WP_015424089.1|372841_374119_+|ArsB/NhaD-family-transporter
MLLMIIALLVFIVTYLCIITEWVNKMLAALIGGFVIIVLGVVDQSIAFSAIDWNVIFFLIGMMLTISVMRETGMFMYIAIKTAKIAKGSPLKIMAMMFIATAVISAILGSVTTVMILVPIVLLIAEELKITPAPFIITMVVASNMGGAATMIGDPPNILIASATKYTFIDFFLNLTPAIVIIVIGSLGLIWLLYRGKMYVSNERRAKIMEYNDKNLITHPKLLWITLGVVALMLLAFIFQKPLHLENATIAMAAGLILVFIGSRKKVETIILNDIDWITIFFFIGLFMIVEGLVHTGFIDLLANGVMSITNGEPKTTSMVILWLSGILSAWIDNIPFVAAMIPMIKSIGLHMQSAVQVQPLWWALSLGTCLGGNGTLVGASANIVAVGIANRNGYKISFMDYTKIGILFALESMLLSSVYIWFRY
>NC_020449.1|WP_015424088.1|371937_372837_+|PTS-sugar-transporter-subunit-IIA
MLLASFLEAHNILFENRVLTKEQVYKELVDRLCSQYKLPISSSKLLELIFKREEEVSCAYPTGIAIPHIRMDGFNDTLIAMAFLENPLDYNGIKVNWVVLILTDKTSSKTYLNIVAALLKLSKDKEAIKALASAGDGHSVIHYLKKNEVEVKKDVIIADIMVQNPIAVLPQNSLRELINLMSTHKVAGMPVVDETGKYVGEVNVLNLLEVGIPNYVMMLDNLNFLSSYEPLENLFSKQDLLFVKDIMTTDEIFVRPEASIIETVFLMVSHNKRYLSVVKEEKLVGLITAMDILRKVIAV
>NC_020449.1|WP_044278792.1|386145_388722_+|ATP-dependent-chaperone-ClpB
MNTQRFTIKSQELLADMQDLASSYGHQEIKDLHLLKAMLTQEEGLIQPALEKLEVSIPKVKSEVENALNKLPKVSGSSQQYLSQEVLDILHQAEKEADQFQDDYISTEHLLLAILAKGKEAANILKNAGLQADKLLLALKELRGNQRVTDQNPEAKYQALEKYARNLTRLARMEKLDPVIGRDEEIRRCIQILSRRRKNNPVLIGEPGVGKTAIVEGLARRIVARDVPENLLDKELLELDMAAIVAGAKFRGEFEERLKAVLSEVEKSEGRIILFIDELHTVVGAGAAEGSVDASNMLKPALARGNLHCIGATTLTEYRKYIEKDPALERRFQPVLVTEPSVEDTISILRGIREKYEVHHGVQISDNALVAAAQLSERYIADRFLPDKAIDLIDEACALLRMEIDSLPVELDESERRLRQLEIERLSLAKEKDPLSQERLEKIKEEIAQLNEENKALRLRWEKEKQVLEQIRTLKTEIDTLKGEADKAERAGNYEKTAQLRYGTIAAKEKELQKLLQDEAMTKKDRLLKEIVDEEVIAEVVSKWTGIPVSKLAESEMQKLLELENVLAQRVVGQEEGIKALANAIRRSRSGLSDENRPIGSFIFLGPTGVGKTELAKTLASYLFDTEKALIRLDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSVLLLDEIEKAHPDVFNVLLQILDDGRLTDGKGRTVDFKHCVIIMTSNIGSQEIYEASDSELEQIKPRLMNILQQYFRPEFLNRVDDIILFHRLNKDHIKKIVKLQLDILASRLANRNLQLDFSENLIEHLAEAGYDPAFGARPLKRIIQKEIEDTLAKYILAGQFTSGKKIMLDWEPHQGLIITQ
>NC_020449.1|WP_015424101.1|389446_390727_-|ATP-phosphoribosyltransferase-regulatory-subunit
MVQEPQSFHEFMPDKVWKWKILEEKVEKVLSLHDFQEIRLSVLQDSQVLQDGITALIQGQEADTAMKGVLSLSLPDDQLSLLSLRPEGTISVLHHTARITNPGEIHRFYYSGPMFRRINNQQQMEFYQLGVELLGSESILSENEVISLGMKLCKTLGLNEVRLDLNSYGCFTCRESFFSDLNKYLEEHKSEYCNSCYRELSTNPFSQVHCANPDCKKSLQEGPHIYDYLCNSCKTDFNKVQKIQANLGNQYKVNPNLNKNFAYYNKTVFDFIAKHKGKEIIIGGGGRYDYLSALITGKRIPAVGFYLNLDSIFEIMESRGLFEEKDPEFTVYICAESPNLEMMTLQIVQELHSQQIKTIISPECRPAEKEIAIAKKKDCPIMLILRDDNIREGKILLRNLVKEEQKYISLRDTLPSIMLAKKAMQS
>NC_020449.1|WP_157860035.1|391071_391839_-|TaqI-family-restriction-endonuclease
MIEDFKRYRDFLVTIPLDKYREELKEIKWVEQDLPKEILPLASIFKYYWEERQFLDFEEWFDTFWKEINTNSPSKEVLNQFKKYYFDKDNNGWFKKGFRARMYRTWVSVLTQMDFCYLFQFLCAREGKILSLECNAALDARGVDAKVGNIGFQVAKISNRKEARSASKKKTLVTIPYAVFNIEEFEKKIKSPRVKDKKGYQNSLKAFQKYFIRLKNGFVVFGEAYLLPIIDNIEDITKVKETVDKISLELSGEEV
>NC_020449.1|WP_015424103.1|391843_393259_-|N-6-DNA-methylase
MKEIGDEQRSDELLVNQDKTLMDFNLHQSIVNSDLRDIKRDSGMFFTPEWIVDLMVNLIDDTNYVEKEGIKILEPACGLAQFLLGIKRNKPSLFSQAKLFGVEINQEIINYLSNLNIANAIDLNRADYLLWQTRSYFDLIIGNPPYGIPSLSEHYTIKTNPATKEKYKKLYATWFGKYNVYGAFIEKSINLLKDNGQLIFIVPPTFMILDEFKKLRLFLAQNGKTEIIYLGADIFKPEADVSSVVLNFIKSDKYISRLELKEFQDNKIRTLKSNFHWKGEVVKFDTDYTQTLESLCPYRLGDIYNIRISPRTPEIKRSNIIVKEKAPGENDYLPLLNGKNLKCNMINYNNLTGYWVKKQDVNKIRMYFGYPHIVVGLGFRENGKVAAAFDEKCYPWMGDVYHLVRENSLFNCHFDLETEEVVAYLNSDYIKKYVKDTYREITYHLSITQLKNLPVPDKNTLQLIKKENLCE
>NC_020449.1|WP_015424105.1|393728_394100_+|RidA-family-protein
MQSVMTHRAPAAIGPYSQAILMNNILFVSGQLGIDPGTSLIPESFEEQANLVFNNIKAILDAAGMGLSNIVKVSVFLKDLDDFTLLNEIYTRYFSAPYPAREVVQVSRLPKNGKIEISVIAMR
>NC_020449.1|WP_015424106.1|394104_394608_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MSIITKSGDDGKTSLYSGERVYKDDLRVEAYGTLDELNAWIGECRNHLANPVDKENLLEIQKNLFRCMGQLATKKGTFAKAITQKDVDNITELVYSLEKNLHLKGFIIPGGNPVSAKLDICRTVARRAERKIIALSRKENIAPELLSYVNRLSDFLFVLARKEENKT
>NC_020449.1|WP_044278793.1|394621_395371_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MYKIVLLRHGESTWNKENLFTGWTDVDLSEKGIVEAHNAGKRLKEEGFVFEETWTSVLKRAIRTLWIVLDEMDLMYIPVHHDWRLNERHYGALQGLNKAETAAKYGEEQVLLWRRSYDTPPPPLEKSDPRYPGFDPRYANLREDQLPLCESLKDTVKRTMPFWNEIIMPRLAAGRKMIVSAHGNSLRAIVKSLSKISDADIVGLNIPTGIPLIYEFDDNLQPVKNYYLADKAELESAQQAVANQGKAKT
>NC_020449.1|WP_015424108.1|395375_395828_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MHPQVRIIIGSKSDLEKITPAREILEEFEVSYDLHISSAHRNPEKTIALAQNAKAEGIEIIIAGAGLSAHLPGFIAAHTTLPVIGIPLASGALNGLDALFSIVQMPSGVPVACMAINGAKNAALYAIQILALKDKDLEKKFSAYKKGLEG
>NC_020449.1|WP_071818959.1|395831_396500_-|PTS-sugar-transporter-subunit-IIA
MAKKFISKAEAAKKLKVSERVIQEMIATNVFESKLVGKNVKIDEDSLNEWLENLNETEEKMLALKRVICHFEEYMRPENIFLDFTAENKYDAIRILSEKAKELKLVRDARWLYEVVVAREELVSTAIGNGVALLHPRHLHPSKIKAPSILFGRSSEPVDFDAPDNKPVNIFFMLLLHNDKQHLFSLSYISRLVMNQDILKGLTEAKDAQEIHQLLTVIPEQT
>NC_020449.1|WP_015424110.1|396595_397096_+|LptE-family-protein
MVKKFIYAILLLVILSSCHYSVYSNAYPHLRKIRILAFENRTSEYGLGDKLLNYLNREIREDGRLKLVTEDPDCTLEGAILSFSENVYSYDTANQVQDYQVKMVVSVTFTDLINNTVLYQNSGLTVTELYAVAEGGTAKFKTKEEAVEELISKLYKTILQNSIEGW

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Crispr_ID: NC_020449_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_7

423695-423818

Orphan

Consensus_repeat	Method
CAGATGCATATAATTGTCAACAATAATTGGAGGAATCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_7

>merge|NC_020449|7|423695-423818|CRISPRCasFinder
CAGATGCATATAATTGTCAACAATAATTGGAGGAATCAGTGGGTGGTAAAGGTAAAAAGTATCCCCTCTTAATATCCTTTCCTATCAGATGCATATAATTGTCAACAATAATTGGAGGAATCAG

>NC_020449|7|6|423695-423818|CRISPRCasFinder
CAGATGCATATAATTGTCAACAATAATTGGAGGAATCAG	TGGGTGGTAAAGGTAAAAAGTATCCCCTCTTAATATCCTTTCCTAT
CAGATGCATATAATTGTCAACAATAATTGGAGGAATCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424151.1\|434250_435300_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278798.1\|418133_418613_-\|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|131254
NC_020449.1\|WP_015424136.1\|421124_421757_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_020449.1\|WP_044278804.1\|432095_433151_-\|SPASM-domain-containing-protein	unknown	unknown	gnl\|CDD\|275121
NC_020449.1\|WP_157860036.1\|423951_424803_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_020449.1\|WP_015424148.1\|430638_431724_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NC_020449.1\|WP_015424147.1\|429540_430608_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|377382
NC_020449.1\|WP_015424150.1\|433311_433557_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183178
NC_020449.1\|WP_015424135.1\|419732_421115_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223112
NC_020449.1\|WP_044278803.1\|429004_429538_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780
NC_020449.1\|WP_044278802.1\|428489_429008_-\|chromate-transporter	unknown	unknown	gnl\|CDD\|376780
NC_020449.1\|WP_015424132.1\|417721_418132_-\|SoxR-reducing-system-RseC-family-protein	unknown	unknown	gnl\|CDD\|377263
NC_020449.1\|WP_044278799.1\|418599_419592_-\|D-glycero-beta-D-manno-heptose-7-phosphate-kinase	unknown	unknown	gnl\|CDD\|274029
NC_020449.1\|WP_015424138.1\|423175_423544_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377534
NC_020449.1\|WP_015424152.1\|435303_436830_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424137.1\|421743_423093_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_020449.1\|WP_015424129.1\|415820_416849_-\|bifunctional-N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|224128
NC_020449.1\|WP_044278801.1\|425852_428306_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NC_020449.1\|WP_015424131.1\|417341_417725_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NC_020449.1\|WP_015424130.1\|416841_417345_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278798.1\|418133_418613_-\|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase	gnl\|CDD\|131254	TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.80967e-77
NC_020449.1\|WP_015424136.1\|421124_421757_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	2.8471e-60
NC_020449.1\|WP_044278804.1\|432095_433151_-\|SPASM-domain-containing-protein	gnl\|CDD\|275121	TIGR04317, W_rSAM_matur, tungsten cofactor oxidoreducase radical SAM maturase. Members of this family are radical SAM enzymes involved in the maturation of tungsten (W)-containing cofactors in the enzymes aldehyde ferredoxin oxidoreductase, formaldehyde ferredoxin oxidoreductase, and others, and tend to be encoded by an adjacent gene.	1.43832e-33
NC_020449.1\|WP_157860036.1\|423951_424803_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	4.09206e-11
NC_020449.1\|WP_015424148.1\|430638_431724_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	1.94195e-38
NC_020449.1\|WP_015424147.1\|429540_430608_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|377382	pfam04551, GcpE, GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.	0
NC_020449.1\|WP_015424150.1\|433311_433557_-\|hypothetical-protein	gnl\|CDD\|183178	PRK11525, dinD, DNA-damage-inducible protein D; Provisional.	5.38804e-15
NC_020449.1\|WP_015424135.1\|419732_421115_-\|amidophosphoribosyltransferase	gnl\|CDD\|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	0
NC_020449.1\|WP_044278803.1\|429004_429538_-\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	4.48264e-45
NC_020449.1\|WP_044278802.1\|428489_429008_-\|chromate-transporter	gnl\|CDD\|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	1.58273e-40
NC_020449.1\|WP_015424132.1\|417721_418132_-\|SoxR-reducing-system-RseC-family-protein	gnl\|CDD\|377263	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, which is itself involved in thiamine biosynthesis.	2.97786e-23
NC_020449.1\|WP_044278799.1\|418599_419592_-\|D-glycero-beta-D-manno-heptose-7-phosphate-kinase	gnl\|CDD\|274029	TIGR02198, Uncharacterized_sugar_kinase_BU060, rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	7.86426e-118
NC_020449.1\|WP_015424138.1\|423175_423544_-\|four-helix-bundle-protein	gnl\|CDD\|377534	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein. This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.	1.65363e-27
NC_020449.1\|WP_015424137.1\|421743_423093_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_020449.1\|WP_015424129.1\|415820_416849_-\|bifunctional-N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	5.35687e-124
NC_020449.1\|WP_044278801.1\|425852_428306_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NC_020449.1\|WP_015424131.1\|417341_417725_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	8.43922e-39
NC_020449.1\|WP_015424130.1\|416841_417345_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	6.00531e-49

>NC_020449.1|WP_015424138.1|423175_423544_-|four-helix-bundle-protein
MKINKNLDIWEKGRQLAPNVYELAKELPEEEKFVLSQEITQTAIAIPSNIASCAEAKNAKEDKNFRNIISGKLARWETQREIARKLGYLNEDKTNNVFKQINLIRSPLSSLNKALKTDEATN
>NC_020449.1|WP_015424137.1|421743_423093_-|ribosome-biogenesis-GTPase-Der
MRKYIVSIVGRPNVGKSTLFNRLCRKRSAIVDFEAGITRDRKYEDVEWNGKIFKLVDTGGIVFNSIETIDKMVLHQVMLAIDESDLIIFMVDAQTGTTDIDKEIAKILYPHKDKVMLVANKADNEKYEWEVYDFLQLGFGDVIPISASQGRNTGDFLDAVIERIPGTQSIFQLEEKSSATRIAVVGKPNVGKSSIVNLLLGNPKLIVTEIPGTTRDAIDSPFRYHNKDYILIDTAGLRRKTRVNYGVEYFSTLRTIEAIDRCDIVVLVLTADEELSVQDIKIASYAKRKMKEIMVVYNKWDLIEKETNTINKYLKELHYQMPFLQFAPVLFISAKTTQRIHRIMETVAKIEEESEKRISTAELNRFMEKVIMHRPPTHPSGRHIKIYYLTQAAVKPPTFIFFCNTPSLITENYRRYLHNQLREMFKFEGVSIKLIFKGRKKGEDKLELQ
>NC_020449.1|WP_015424136.1|421124_421757_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MSFNNFLPYIILLFAYLLGSIPIGLIVGKVFYHKDIRKEGSGNIGATNALRAFGTSTGLIVLLLDMAKGFIPVMLATSFLEKGSPFIALTALLVILGHIFPLYLGFKGGKGVATASGAFLALTPLSLLIALITFIIVVAVFRYVSLASICAAFVFQWHCFALLLKEAKPDYATVILVAIVVLMIISKHKSNLERLLNKTEPKLKFTKKGN
>NC_020449.1|WP_015424135.1|419732_421115_-|amidophosphoribosyltransferase
MCGIIGVFGNDNAGRLAAVGLFAEQHRGQESCGMAVSDGLLIRLHKKMGLVKEVFHEEQLNALPGKIAIGHVRYPTKGSATEFNTQPHLVETLSGPCYALASNGDIVNYAQVRKMLENEKVYFKSDNDAELLVKYIAYRILHYKENIGDAIRNLMRDIKGAYSSVLCTPTELYMFRDPYSIRPMIWGKTPEGTVIVASESCALDTLGVQDRKEVPPAGIIKVSDSKIEVLDNDPNLYREGNCEKHCIFEQIYFSRPDSFHFGENVYAVREKIGAALALQDEGLNPDLVVPVPDSSNFIGLGYANQNGIPLSLGLIRNHYIGRTFIKPEQAVRDESVRQKFNVLPNFFNGKRIVLIDDSIVRGTTIRKIVRLIKDAGAAEIHLRIGSPQIKHSCYYGIDTPTTEELIANRRTLEEIREITGVDSLKHLPLTDLKTCVHCPENYCYACFDGNYPVGVPDVYN
>NC_020449.1|WP_044278799.1|418599_419592_-|D-glycero-beta-D-manno-heptose-7-phosphate-kinase
MYSIKPEKLEEILKSFQNRRIIVLGDIMLDEYLWGKVQRISPEAPVPIIEVNSTDYRLGGAANVAMNLSVLNAKVDLVGVCGKDTQAEIIVQQLKKREMPVEGIFFDPSRPTTLKTRIGSVSQQIVRLDREEVAEIDNSIQKEIFNYLVKIIPLCDALLIEDYNKGLLSFNLITDVLQLALKHKKMVAVDPKYSNFSSYGGVEIFKPNYRELESYMGRKLTDQDDFERSTEELRQRMSIKHLVVTKGSEGMYLFSENKPVNHLPSFAREVFDVSGAGDTVISALTLAYLYDRNIETAALIANHSAAVAVAKKGTASVSIEEIWDSFNAPK
>NC_020449.1|WP_044278798.1|418133_418613_-|D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase
MLQNKIIPYSEIAELSQKLHQQGKKIVFTNGCFDILHCGHILYLEKAKALGDILILGLNSDASVKRLKGNNRPIVSEKERALVVAGLESVDYVCIFAQDTPYELIDLIQPDVLVKGGDWTIDKIVGADIVQKKGGKVLSLNYEQGFSTTNIIERIKQDK
>NC_020449.1|WP_015424132.1|417721_418132_-|SoxR-reducing-system-RseC-family-protein
MQEEIIEDSGIVKKVEGNSVIVEIERGGGCNSCKMQGFCFKKNEPAEFEIVTDIPLQVNDRVQLDISPLGRTLVSLLIFGVPLLFLFLGFLIASLWFTEIVSILIGFTAMALSFRIIRFIDTKYGKRLKISIARKL
>NC_020449.1|WP_015424131.1|417341_417725_-|dihydroneopterin-aldolase
MKIRLNEMVFYGFHGVNAEERSLGQRFIVSAVLHTNPTIDKTIRRLEDTIDYTKVYAEIKEIMESRQFYLLEDCANTIADKLLADFPLLEKLTICIQKPSVPIPGSLKSVEVILSRTRNNQEDNLSQ
>NC_020449.1|WP_015424130.1|416841_417345_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MIYYLCLGSNLNNPVSQLDGAIQRLENDPGIKILRSSKRIITEPYGIINQPDFLNQVLEVESSYQPQELMERLLNIEKAMGRIRRIKWGPRNIDIDILLAGDLVLDSRITPLEKSSPEVIIPHPDLHNREFALRLLNELIPNAKHPLMHKTIYELYYSIVAEEEYYE
>NC_020449.1|WP_015424129.1|415820_416849_-|bifunctional-N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase
MNNLAGIILAAGKGTRMKSERAKVTLPLADKPMIQRVVETALSANCQKIYIVVGYRKNNVISAVEDNEKIEFVEQEEQLGTGHAVMITESLFTNPDQDVLILCGDVPLLSAQTLLRIYEKHKSSSAACTVLTAFLDDPGKYGRILRDTSGKICGIKEYKDASEEQRKIKEWNTGIYCFQAKNLFSALKQTSNHNQQSEYYLTDTIDILYRQGKTISNVVLEDLMEVSGVNSQEELAALEDIYVDRTRKKWLNNGVVIHNPHSVYIGDEVIIEPDVEIHQNTVIKGKSTLEKGCVIGPCCYLEHSTVSLDSILQGHNILVNAILPEHHILDFGSHIIEEIQYE
>NC_020449.1|WP_157860036.1|423951_424803_-|helix-turn-helix-domain-containing-protein
MNTYMENKKIIGSQDVKTYRLQMVQDALKYGIKPCARQYQTTVKTVRKWVKRYQQYKEDGLNDLSRKKTHCLIKIDKETELQIIKCRKAHPGWGARRIKEVLELNFSHVSIHRVIKDAGLILPKRKKYKKRKDMQEVRKQKKVFSRFQIDIKYLTDIPEFEIWRWEHHFPLYLISARDYKTGAIYLAYSYEKSSTATALFIDYLLSSLQNYGINPQTIIIQTDNGKEFINPTDRKVTLFEKIVKEKYQATHFLIPYRRPTWNSDVESFHNLIEEEFFILRKTK
>NC_020449.1|WP_044278801.1|425852_428306_+|glycogen/starch/alpha-glucan-phosphorylase
MNKAFCEKLSHLSIEGTAEEIVHRFIEHLKFDLGKDEFSATPYDCYVSFASAVKDILMDRWLITQPQEYALQRKRVYYLSLEYLIGRSLGNAILNLDIQKQSIKALTENGFDLSLLSELEWDAGLGNGGLGRLAACFLDSMATLKIPAYGYGIRYEYGIFFQHIINGEQVETPDNWLRYGSVWEIARPARLFPVYFGGIVKEEILEDGSKKMRWIPEETVMAMAYDYLVPGFQNNYVNTLRLWSAKSTREFNLAYFNEGDYMQAVADKNHSEMIAKVLYPNDNKMQGKELRFRQEYFFVSATLQDILRRFLKKESDLRKLPEKAAIQLNDTHPAIAVAELMRILVDERNLPWEIAWEITQQCMAFTNHTILPEALEKWQVLLFEKLLPRHLQIIYEINERFLSSIRITGLYDDDFISRVSLIEEEPVKSIRMANLAIVGSHSVNGVSELHTDILKHLIFKDFYALWKDKFNSKTNGITPRRWLMLCNPLLSELITQAIGSAWKTDLKELAKLNKYKNDSTFLEDLGEVKRQNKLEFCKYYEDLHKRKLNPESIFDFQAKRIHEYKRQHLNALGIIHLINQIRDGKTPYPQSFFFAGKAAPGYFIAKLIIRFICALSDYIEKDKELSRYLSVIFLPNYRVTLAERIMPPAEISRQISLAGTEASGTGNMKFALNGALTIGTLDGANIEIREAVGEENFFLFGMTAAEVKNLKESGYHPYEMMRQNEDIKRIFDFIESDILNPLNPGLFTPLTDLLLYQGDKYCLIADLPDFIRVNAEAVKVYQDKQQWNRMSLANIANMGKFSSDETIKGYAKDIWGV
>NC_020449.1|WP_044278802.1|428489_429008_-|chromate-transporter
MIYFQLFLTFFKIGLFSFGGGYAILAMINQEVVLKNAWITHSQFMDIVAISQMTPGPIAINAATFIGYQKGGFVGSVLSTLGVISPSLIIMTLITLTYIKLKNQPWFKNIFKKLRLLSLGLIAAALIMVAGDAFRDLFSVLVFTASFIASWKFKLNPFYLLIGAAIVGMVLG
>NC_020449.1|WP_044278803.1|429004_429538_-|chromate-transporter
MLLKIFFTFFKIGAFTIGGAYAMIPLIKREVCQKNNWLTEDEFWDGLSAAQSCPGPIAINLSIYIGYHLAKGKGMAIAVLATILPSFIIILIIAMLFQQFAEITLVQKAFHSLRPAVVALIAVPLIQMSRQSGLTLSNFWFPLSVAILVGFLKISPVYLILITIAFAVYQGLKKQKL
>NC_020449.1|WP_015424147.1|429540_430608_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MQEIKRKNTRRIQLGNIPIGGGAPVSIQSMLSVKTSDRENAIQQIQELESVGCDIIRCAVMDLDDAKAIKDLKKIAQAPLVADIHFNYRLALAAMENGIDGLRINPGNIGKIEGVKALVASAKERKIPIRIGVNSGSLPKDLLQKYGVSAKAMVESALRHIRILEELSYYEIKVSVKASSIPLTLESYRLLSSVCDYPLHLGITEAGTVFRGSIKSSIALGILLEEGIGDTIRVSLTDKPVQEVKVAKEILTSLGLRKGLNIISCPTCGRTRIDLIKLATEVEKALEPYNNYPLTIAVMGCAVNGPGEAKEADFGIAGGIKEGLLFAEGKVLKKVPEAFLVNELVALVQDYISKH
>NC_020449.1|WP_015424148.1|430638_431724_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MKISEIMKQIEEFAPLGLALSWDNSGLQIGDLNSEVENVYITLDVTSTAVQKALENGCQLILSHHPLIFQQLKNITNPLYLEIIKNNLSLISLHTNLDVAEKSVNHSLAQKLGLEVLGSLSSETGATNYIIVVYCPLEEAEKIMHSAWNAGAGKIGNYYNCANKQESEGYYKASENAKPYKDSGIEGHIAETCLQFCCESFHLNDVLAAIRQNHPYETPLIYHYEVANPNPAYGLGLICKYNAEINLQDLAILVKERLNCPQVKLWTASFDLHKNINRIAICGGSGSSLISAAQKTADVLITGDISYHGFLESKIPLIDAGHFYTEYPALQLLADFVNKLQLHPFIMPQNEHLYTQHLLII
>NC_020449.1|WP_044278804.1|432095_433151_-|SPASM-domain-containing-protein
MNTDYLNLAKAFLYKQRLWQTCGIVCEYGLSLITHKPLVHFYPPALMLEPTNICNLHCPLCLTGNGKLLRPRGMMSLPLFKKICREVQNKIGMLILWSQGEPFLNPDFYAMLEYASKQNFYTMTSTNASLELNIERIVKSGLHKIIISLDGITAETYNKYRINGNFDLVLKNMQELVHQKEKLHSNKPYIVWQFLIMKHNENEIEEVKHLARKLKIDKLEFKTAQIYSSDDLAFLPSDHKYSRYFQQGNKFTLKTQLKNRCIRLWTQPVINWDGEMNICCYDKNGSIKIGNIQEHSFSELWCGKKIQKMRKAILNNRSAFEICQNCGEGIVQKIKMVKGEKVKKWKSGKVE
>NC_020449.1|WP_015424150.1|433311_433557_-|hypothetical-protein
MFYYQWIRQYYKELYIEDEALFGGINTQEMKRKLNIPISGPLADFLPTITIKSKDLATKITSHNIIVKDLICLPNSDLSNC
>NC_020449.1|WP_015424151.1|434250_435300_+|hypothetical-protein
MTKRFLVTLILLTAVFCSALEVTYIDWQNYGSAATRIVIGLYGTGSYKVDKSNDFVEIKLDNADVSKVDISNSAEGLIKSIEQFGDKIVISTFCPYCLEQMELDAPRRLVLDLIVAQPDKQQKIELVDFYTSVGKLNSADKIYSELHRNYPSDYEILYKWACLLKQRGSGRLKEIVGKIPENSEYYSLAQQMLKGTEKKDSAQLCSPQKAQNACKISSVEEKTTTESLYIMPKTQQDKKQTTKPAKIKKLYGRKWISGIMLLIILILLLILIYLFIASISRKKKKTTLNINIEPDNKEDIHPEENKTLCLMVRRLLDFGWTNSEIAKELKISEEEVERLVQLCHQDESQ
>NC_020449.1|WP_015424152.1|435303_436830_+|hypothetical-protein
MAKKICLAILLLFCSLLPALSLIPDSAFAPEIQKGLKPSLLSYLQSAKEDSISIYNNGLYLPFVSRSSVGDAVLDICRLGNANYSLLSYQSPDYKLRGELNFIGGLEPVKKDESYSFLYRGWLLKSQYGKHIEMNTKWWNGIFLGNQNAARNSWLVDGYYNTTDEKLNIDNLSGDISYNAKNLTLALGRGKFPVGNSISGSIILNDGVNDYGYILAEGRAGIFSISFLHASLMADSTYNIYNDHFYNNKNYPDKYLALHQFGFHPCSNLHLFLGEEIIYGNRSPEISYFLPNAFWRAIEHNLWDRDNVMIFAGGSYRPVQPLFLYAQVLIDEFSSSKLFSDWWGNKYALQGGMRWNVPFSLPESPSADITTEITAVRPFTYTHYLNHTMFSTDGRPLGYPKGSNLADVSCLLRLPYKDIFLWQGGVSYCKQGSFGSDWRQNYHNVFNTAEEIDEGTADWFQGTKTETITLKSNVLIDIFAHHRLLFGFETAHLDDWQNTFYSAWQFIY

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Crispr_ID: NC_020449_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_8

632605-632687

Unclear

Consensus_repeat	Method
CGCGGTGAAGTTTTGACTCTAAACCGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_020449_8

>merge|NC_020449|8|632605-632687|CRISPRCasFinder
CGCGGTGAAGTTTTGACTCTAAACCGACACTTTTGTGGTTGCAACGAGATTTTGCCGCGGTGAGGTTTTGACTCTAAACCGAC

>NC_020449|8|7|632605-632687|CRISPRCasFinder
CGCGGTGAAGTTTTGACTCTAAACCGAC	ACTTTTGTGGTTGCAACGAGATTTTGC
CGCGGTGAGGTTTTGACTCTAAACCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278844.1\|622178_623588_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NC_020449.1\|WP_044278852.1\|658754_659318_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_020449.1\|WP_018197019.1\|656339_656705_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424310.1\|628917_631095_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_020449.1\|WP_015424309.1\|624308_625406_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NC_020449.1\|WP_015424316.1\|653208_656334_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NC_020449.1\|WP_015424306.1\|621579_622182_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424308.1\|623568_624306_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|293830
NC_020449.1\|WP_015424303.1\|615186_618570_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NC_020449.1\|WP_015424315.1\|651185_652973_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|335469
NC_020449.1\|WP_015424314.1\|643614_649842_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_020449.1\|WP_044278843.1\|621150_621579_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278842.1\|618970_621148_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NC_020449.1\|WP_015424302.1\|614244_614379_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NC_020449.1\|WP_162010048.1\|658366_658645_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278850.1\|649890_650445_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_052293572.1\|633293_633872_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_020449.1\|WP_015424311.1\|631102_631750_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424313.1\|636280_642175_-\|choice-of-anchor-D-domain-containing-protein	unknown	unknown	gnl\|CDD\|380152
NC_020449.1\|WP_044278851.1\|656994_657501_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278844.1\|622178_623588_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.000163474
NC_020449.1\|WP_044278852.1\|658754_659318_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.24562e-92
NC_020449.1\|WP_015424310.1\|628917_631095_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	4.29732e-08
NC_020449.1\|WP_015424309.1\|624308_625406_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.45404e-63
NC_020449.1\|WP_015424316.1\|653208_656334_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_020449.1\|WP_015424308.1\|623568_624306_-\|ribonuclease-Z	gnl\|CDD\|293830	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. It includes the C-terminus of human ELAC2 and Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	6.81674e-28
NC_020449.1\|WP_015424303.1\|615186_618570_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_020449.1\|WP_015424315.1\|651185_652973_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	1.32382e-37
NC_020449.1\|WP_015424314.1\|643614_649842_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	4.1891e-06
NC_020449.1\|WP_044278842.1\|618970_621148_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_020449.1\|WP_015424302.1\|614244_614379_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	1.3539e-11
NC_020449.1\|WP_052293572.1\|633293_633872_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.04196e-08
NC_020449.1\|WP_015424313.1\|636280_642175_-\|choice-of-anchor-D-domain-containing-protein	gnl\|CDD\|380152	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein. This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.	1.33877e-13

>NC_020449.1|WP_015424311.1|631102_631750_-|hypothetical-protein
MKKFILPLLLILTVGMLAAVESEPSEVVGYVKYDCYTGFSYVAIPMGEGGNAEDLVSSNMPNITAIFKFVPSLQGWTSIEYDTEFQEWTDSMPVVPGDVLLLECTANTTFYSIGSLPTNYTYNITPGYNYLTVPVNRGNIQAAEQIGNEIGNINSIFRWLNISQGWESIDYDSEFMEWTDTLPASIGDVFLLDSSGTAIWPTASKTINMKISGKK
>NC_020449.1|WP_015424310.1|628917_631095_-|T9SS-type-A-sorting-domain-containing-protein
MKKVLIIIAIALSVLSIYAQTNTPRTLYVQARNSDNSAVAQTDQQYITFQATITSSPNTLTESSVGCGFTTLGGQTYLKIQLGNYTNQWQNGDIVTVNAQRSSDQATGSLNDIVLSGTGTIYWGRGTGYPGTPLIFTSLAPTTHIISGAITSQWDLSEVAISATDILPADITYAAGAYSVTVPDGWDGTVTPSKTGYIFEPASRTYTDVVADTPNQDFVMKTVVVPGVPANLSPNATTLTFTEPTAVTLTWDAVENAQGYRLIWNNGEIQDLPNVLSWTTPTALGAGTYTWKVCAYNNLATKKINTPVRVQMNGRSTSTANSPKADGGWAEASFIVEIETIPQNYDVTITSVPIGAAIYVDGSDSGAITPHTFTLAAGTGAVYTVVMDHFTWNPTEFVVTNISENMSCNFVGTPHYDIPDGVPTTPPGATVTVTITITGGNANYGSGVLPPWVNPSFVAVEQYFLSLIGTGPWTITFNTTAPWAAYFLGGIWHAVQNTGVTITFTIDGAKDVPNLPVVLGNEDPTLPVELSYFAATLTAENFVNIAWTTQTETNMNGFNIYRNDGSDNLASAIQIAYIPATNTSTTQNYKHIDKEVEFGHTYYYWLECVEMNNHSTFNGPSPIYVNGTTPPILPEYTKMYNAYPNPFRAGSGTTIAVEVKKGDSGTVTIYNILGQVVKTFSLTEGNNNLNWNGRDSKGNLCGNGIYFYKLSTNSLNQTKKMVIVK
>NC_020449.1|WP_015424309.1|624308_625406_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MENRIYEYLSVFIMAWLFVYGLTPFIIRLASALNFVDKPEARKIHLKNIPLLGGLSVATGFVLLCIYDVLITPGRYLDKPMLGYLAGSIIIVLIGIIDDHKGMKPAVKLAGQIAVSLLFIGTNFTIGELGLMFGSIYLSLPIMLLWMVGLMNALNFLDNMDGIISGMAGILGLGFFAFALVNTTQANQEAMALMALIALSFAGSTFGFLPYNFNPARIFLGDAGSMFIGYFLSSMGILMARYAANRYNDRFFYLLPVLLLSYAIFDISLVSYTRRRDGRQVTQGGRDHSTHRMNTILGSVKITAIMIYTINVLIALTSIIIFRIGNRHLLIITTVIFAGFFLFIGRKLDKVPIVVPANQQKHKKE
>NC_020449.1|WP_015424308.1|623568_624306_-|ribonuclease-Z
MELTILGSGPGLPQLDKHLSSILIRKENNLILADCGDSCAHRLLEHKVAAEELDAIFITHYHPDHLDGLFMVLQMLYLQNRKRDLLLFLPERPASFLEILQLMYTYPQKFGFNLLIRDIEQAELYFDWIYAVPNDHLYRYASIISEYKLPNQMKSWSLCFTGKQGKFVYTSDIETTDCIMDTLKEAHTVLVDAGHPEAEQIIKLKYTAIKKIILTHGITPELENRKEELNPEVFEFAREDVVYQI
>NC_020449.1|WP_044278844.1|622178_623588_-|hypothetical-protein
MLFTRYKIILLLLIVIILSGCEINRLRSAEELYQKNLYAAAIVELDDLIANAENRAIATRAEIVRSNCYSALAEAAVEKKNWPLAIRFFKLANSDSANLRLAEIYRDLAMEAEKEGNRIVSKSYLDAIIREVPESPLIPEVLYRRIGYFLDVKADNESAWNDYMRLFDNYPNSPYEILARNYVMRFIPGKLKYAEVLTEQGYYADALKELFEISKYPVVDMNQVNKLISDVYEKQAEELLSQQDYIEADRLFRIAMQYYPQKKESIIHRLESITNLFIQKGNSLLEAGDFQGALVHYRKTFEIIPDYPPALEAIDRLFTIQENIRKAADLYKQGEQLEATGKLNEALQAYNSAYALDPKPEYKQKANLVQNMIEANKNPAAFARKIITEYKGGLLTNRIQNQKKELLKRYKEYEIQDSGWKLMLSTGQYKYEARYDLLTPNETYLYVWQINLRDRSIIPLNKLSEALMQ
>NC_020449.1|WP_015424306.1|621579_622182_-|hypothetical-protein
MKARTKIFLFLLLCIICGTTALPLKAQSFDIKAFSDTTKYGWKNYLDRNAYRQDLKQRQDLLQIYELEAQPLNTNILKSAIIPGWGQFSAKESTKGTVILGTEIVLAGTSFYFLDRALSKYKLYKQATQVDEIERYYKDAQVPYQYSFILMGAAGIIWAYNIFDVIQSTQDYNVRLWEEIMERSKSGPVNITPTGIEVRF
>NC_020449.1|WP_044278843.1|621150_621579_-|hypothetical-protein
MVKHLAKIIILIMLITLIASCSLKRSNPLDPNGNGDITVPEPVTGISHTTSSQHQNPCWVNIKWVANSASNTDGYFIYRGMGYYSSYALVGDVKTNEFMHSSADDPSVQPKIDFYYRISAYKIYPEGKLEGRRSEPYWVRIP
>NC_020449.1|WP_044278842.1|618970_621148_-|UvrD-helicase-domain-containing-protein
MNNNFYASQLNERQLEVVTDTENPVLVLAGAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNKAARELQERLEKLLNIPVRSLWVGTFHAICCRILRFESAHLPFNANFSIYDEDTQKSLLKKIYKEYGFDKQSFPINNILTRISRYKNKLMLPEDIKFQGEDKDSEFATFLNIYRLYQQQLLLNQALDFDDILLWTAKLLLNNNTVREKYRAQFQYVMIDEYQDTNKAQFEIVHQIAGGHQRVCVVGDDDQAIYSFRGASLRNILEFEKDYNSVHSIRLEQNYRSTGNILALANAVIANNRRRHSKELWSELPVGDKPVLAVYENEIEEANRITDAILKLQRKGIPLREIAVLYRTNAQSRVFESALIQAEIPYSIVGGVQFYQRKEIKDLLAYLYVLSNLNDNESLLRIINEPARGIGQTSINRLIGFANKTRISLFSAIQNVEAIEELGNPAKKRISEFCLMLERWQQSVSRKPALEMVKTIVEELELISHYQNSNDPQDIARAENLVEFVTSVSEFSEHFYQENEREPLIADYLPYVALQTDLDRVKENMDSIRLMTLHNAKGLEFEAVFIAGLEDELLPHRMCMNNQDSIEEERRLFYVGITRAKNYLHLSYTKSRRLYDTFYFPVPSQFLTEVDSRLFYHSDGDFGIAQPPKRIKKTNKVITESQKYYKIGQKVFHPEYGLGVILSVDGEGEDARLTISFGNRLAKIIGRYLMKNEE
>NC_020449.1|WP_015424303.1|615186_618570_-|transcription-repair-coupling-factor
MLYAKIEEILAQSKFMQRVLKLPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQDDIIAEDIWDDLCVLIGKENAHYLPDYEILPYEERSPHYSIRATRMETFLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQYQVSKVFQAAKRGGIIDIFSPPLTNPVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTILPARELSLSDVDSGSPIIAKIRNQGFFEGIENYYALLCNELQTFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKEAKIQGQGRVPRPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMRAPFASQPNFESDLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSIGKIPFTEFFGVLHEGFSLEDCHLNLWTDHEIFNRYKSRRYTPRYAPGETIVNYEDLKPGDYVVHIDHGIGVFEGLKIIRLDGSDVECLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNKLGSSKWNNTKRKAAQQIELIAADIVKLYAERSSRLGIAHQPDTEWQKELEDSFIYEDTPDQSKATKEIKEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHYRVFRERLAQYPVKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLLIIDEEHRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPVRTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQMPEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQLYQMRGRVGRSNRRAYAYLLISKGTTTVARKRLEALTQYDYLGAGFQVALRDLELRGAGTILGTKQSGIIQAIGFNYYNRILANAIQAVEKGETIKLFNDESPDTRRKVRTEIDLYFPPDYIDDDEERLRIYKRLSELETLEDINNLEVELLDRFGPLPEQASWLLNYFQLSQLAKKLSLKDCQVKHDSFIMEFDAKKLPSQEQLLHFTTKIKQPLRFEAGKNLKVIIDLDPEASYLQQFETAIEILKIW
>NC_020449.1|WP_015424302.1|614244_614379_-|50S-ribosomal-protein-L34
MKRTYQPSNRSRKNTHGFRSRMATKNGRKVLARRRAKGRKTLTV
>NC_020449.1|WP_052293572.1|633293_633872_-|transposase
MRTKMIHRSLNTYFHIVNHSIDSRKLFYDPGDYKTYLYLFKKELDYKVTVIAYCLMPNHFHFLLRQNAPEAISSLLERTHKRYARYYNKKYNFKGRIFRSPLHHIETPTENYLFNACAYIHANPVQAGLVGFPEEWEYSNFREYIRMRKGKLYSEQFLMDYIVNPEKYRLKVIDIARKKSMQRAFEKDSILF
>NC_020449.1|WP_015424313.1|636280_642175_-|choice-of-anchor-D-domain-containing-protein
MKKLLLITLALVIAALAFAQTDITIGTGTSTGRYPFNDYFVYSRSQCIYLESEIGYPGTINKLRWYRSDTGADASAIGTTQIWLKTVTNTVFTDVNWEDPGTLVYEIANIDLGSGGGWYEVDITDFNYTGGNLLVSVYTQNAPYTAPHSYWYYTATTGYNRCRLGSSDSVNPPPLSLSTARPNIQINMTTSNPTSAPNPAVLVSPANDAWAMIGDILSWNSGGGFPSSYDVYFGTSSTPPLVSDNQTALTYTPTLAAGNTYYWKVVPANLIGEATGCPTWSFKTPTTTQVAESFENTSFPPAGWANPGTWSRSTSYAKQGVASAYKYPYDTSKYILSTPKVTITGTSTLNLWTLCSSTSGTIEVISSPDRITWTQLSSITHSATYTWYNTVVDLSSLAGNNYYLGVRTGGQSYTSYYVDLMIGPDITPEVPGAPTLSTPADLATNVNELTTFTWTAPTTGGVPTGYKLYCDTNNPPTTLKADLNALTYTLTTPLAYNTTYFWTVLAYNGVGNGPTATVRSFTTRADPIISTFPWVEDFGTTTNFPPLNWSRLTGLYPSETPTSTTSGWNYDDFANVVTTPQNMSGRLNIWSTSTKYWLVTPPIAIPGAGYELKFDLALTTYNGIATPPTPGEQADDKFIVLISDSALMTNPIVLREWNNTGSTYVFDNISPSGENHIISLNTYSGTKYLAFYGESTVAGGDNNVYVDNVTVREIPTAPIISCNPTSWDFGQTIINTTKTKDFTISNTGTGTLNVSSIVIAGDYYTLLTNPAPVGLTTGQTATFTVQYAPTAAGTHNGTVTITDNRGVTTVNLSAVCYDPTITSAQLPYSNGFEDTWTGTPPAPVLGWTVINANTDSYTWRRGPTYIDAHTGDYVAQGMGNTDDWLITPPIQASEDLRIKWWDAVESASYPNTYTVLVSTTDNNIASFTNNLGTFTCNLTTWTEHTLNLNAFTGNRIYVAFHQTASGSTYYDFGIDDFLLEAIPAAPVFNYSPTSIAFGTGFVNTPTAYQNVTVTNTGAGVLNLAVADVNIIGADASMFSFDPVNLPAELGSAQSVIIPVRYNPTAIGNHTATLQMVYNATNYDVTLSGNALGEHALYQGFEGDTFPPAGWATATTPWEIYTTYAHTGTKSVKSGYTAGTWWLMTPTLAIEDGANTLTFWYRDNSESSSWDYVDEYTYVMLSTTGNAPENFNTILWTGDYLTFTTTWQMASIDLSAYNGQNVVIAFKSVHTGGNFRIIDDVAGPNLYVPSGPPDPVILTYPANGATGIPQTGFNLTWTQATTGGIPSYYAVYMSQDEETIYDDYRWETTNTYFNPVTEGGITFNYLDRWYWTVEAINDDGSAVVEPAYSFEIQSDPRVNIPYAQDFGTDGTWPLNWSQTYSGGVTSNRWTLSNTNSAGGTAYEMMASWASGTGISRLIAPPLNTDGIANVAINFNTYYNDYAAGITAKVQYSFDLNTWYDTPWSIISGSGDVTGNQTALITGLTNHPTTYVAWVLDGNHYQFDYWYIDDVAISLPPDHDVKVVSYDVENQVVPENTVVTPIATVGNNGLNTETFAVTCTIGTYSSTQTVTGLALGATQQVTFTPLTPTLWSAESVVITTNLVGDEVPDNNTLYDALICLPLNVTGLANNAQTDQFVQFNLANPGVLNALPNGYTGSYFIAGADWKNGQWMGVEYDDGTLATDNYVNIDPLTGVYTDQGDLGAAIMGNAWDDTHDIMYGVSSTGYLYVMDPATGAIGVGDSLWYNLEGTNYSITNLGGLMIDIAYDNTNNILYGIDLGNDCLWTINPATYELTLVGFLGIDLNYAQDAAFDQDSGLLYLAGYAGGGALYWIDTTYGGAYKVGKFTASGYELTAFAIPYGTLATAPVATISGTGQLSWTPVTGAVAYNVYSADDPYGTYTLEATVRGTTYTGPTAPKKFYKVTAVGGRQQTNHQEIRFREPIKHNGKLNQNDRYEFGPVNGFSMRSK
>NC_020449.1|WP_015424314.1|643614_649842_-|carboxypeptidase-regulatory-like-domain-containing-protein
MKKLLLIPLLVLIVAFAFGVEYAIGTGTSTQSYVPFYGLYNYSWSKTIYTKTEINAAGLTTAGNIDAIAFYVGNTPVNYEMLDQRVYIRHTTLATYGTATDETGTAYPNNANFTYVFQGNLVYNGSGWFAIFFSTPFYWDNENNIEILCENWDGAWVSGYPTFCYTPTPSNTYLSVYKALDAHFPTTADGVGTRTLNRPNIQLIKIDSAPNPAVLSWPLNNGFAFLNDKLQWKSGGGYPSSYDVYLDTVDGTTLVSDNQTGTTYTPTLEPETTYYWKVIPYNSFGPATGVVTWSFQTPTTTQLAESFENTTFPPLGWIRTTSNTTYWGRSTAASINGTASMYALTSTTSVYDISTPKCTITTGSTLNFFTRATNVSQKLQILYSTDRTNWTQIGSDITYAAANVWYNISIDLSNYAGEKYLAFRSPTHTTTGTIYVDAVFGPEFTHEAPGPSTLISPLNNSWVLPGNVTLSWNPPLTGGIPETYDVYFGATSDPPLVSSNQATTTYDVTVNEATTYYWKIVPGNIYGDATDCPIWSFKTPTATQLAESFENTSFPPVGWANPGTWSRSTTYKKHGTASAYKSGSTSTQYILSTPKVTITETSTLDLWTLCSSTSGTLQIIYSPDRTTWTQISSNITHTATYTWYNTIVDLSSLAGNNYYMGIRTGLQSASYYVDLVFGPEFTPETPGAPSLSVPADLATDVNEFTTFTWTAPTTGGVPAGYKLYCDTNNPPVTMLADVTSLTTTLTTPLDYSTTYYWTVSAYNGAGESPTATVRSFTTRNDPTIYTLPWLEDFGTTGTTFPPTNWFRGTGLLADPTTITSSTSYWIQDNWLNDTTVSPVNFAARMNIYSTNRSGWLITPPVQIPDTGYQLDLDIGLTDYGNYAPADAPTDDRFIILIGDGSSWSTANIVREWNNTGSPYVYDNIPYTGEHVTISLDDYTGIKYIAFYGESIATGGDNDFFVDNVMVRLTPAGAPDHVTLVSPINGATYIDPENAEVNWTPAITGGNPAYYEVLVGENPFNPEEGYFGEYSFETENTSLNLSEQDIILPFSSTWYWAVLPYNADGLCPDPLAHEFMVWSFTIAPDPTITSLPYIEYFDEVTAPTLPWGWKAYINSTSTSAYVRTYSSTTYAQSPPNSVQLSNSSDTNADLRLISPPIDLSARSINRIKLKFYARSSTAGYPILIGTVSAKDSTGIFTQITSINLTATKTEYVISLQDYVGTDQYICFKHGLGGSSRSLYIDDVKFIELIPADLAATSISGPTFIQAGNSYDYSISVFNEGTAEQNSYTVNLKTGTETLATLNVNAPLTSGATAQHTLSWIPANGGVYPLYGEVILAGDGNPSNNSSNIIDAYVVDPTMTIIPVGDDASTTTGNYLPLNMYYKNSVTEELYFTDEMHLQTGTITAIVYKNNFVETLLDKSVKIWMAHTDSTSLVNGWLPSANYTLVFDGTVTFPNGINEVVIPLDTPFNFTGGVLATRVNRPMDTSYYNSSDKFYYTTTAEHTNRSRYLQSDSETYNPLAPSAAGTAVGYVPNTYFVVQNAVMQQQAVLEGYVRNSVTNQPIVGATITLTERVSTTTNEDGFYHIGFWESLTVDATASMHAYYNLTITDIALTLGTTVTQNFNLVPMPRVTVSGIVTANDYPSGLVGTTVSISGIENYETVTGTGGAFTITYVLGSADTLSYALTVEKEGYQTYISALDVVETNVNVGTINLTEYLWTPYNLVATHSGNDVSLTWEPAGVPNYYFCDFESDNGGWVSSGYGDWEWGHYNLANYVDIDTYVDTPPQSAHSGTGMWGTVLEGSYSNCNTWSYLRKTFDLSIFSNPVLSFWHYMNGYNTWDYGLIKVNGTTVWGNSSSAVFMPWQELTINLSAYANMNSVEISFEWFATTTVSYAGWYIDDIYIGPASRNIVATQFASRNPGDRWFLNYSVYRFLTADEGTPANWSLLQTGLSDTTYMDTTFGTQPGGKYKWAVIANYSGGLQSNAIISNHLGKLAKPQNVVATKVGTTVQLSWNADPGADYYVIYAAGDPYGTFTVLDYENTTSYTISAPLAKQFFKIASADGTMPIAKELEPPAKSKK
>NC_020449.1|WP_044278850.1|649890_650445_-|hypothetical-protein
MRQIKFTGTTFGGMSGKRKENCNYFSALLLVPAILFFAVSYVIAILPFPSVYPMTNTVLFCFLTNELLLPFLSISPLLFLHLVNFIVSFIAPFSILINFSVASMASVFSVANKSSPYINEMQPSVFLPVYFSYNHRTLYRTTSERIEATFHFFLQPSKLVMAYLDYPLCNTQTLSCKAKVMPIV
>NC_020449.1|WP_015424315.1|651185_652973_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MLNKDAEGIKYIVEKEGREFLLKIFYKTSLSNIENIFSLQQRLQELNKLENKHLPKVTEIDPHFDPPYMVVEFIHGISLANLKTHNPEKLTEDFIRLVAIQIVNTAISLHQHQLTLSQLALTNIMINDNDEVIILSSAITWEERDEREEMFSIALVLAQALSQHNFYKTLYSQERLTTQKFEYIYGVSVPLNKILAECLHRNILQRYRSLDDLLNALINLPPVSECEIWTEPEKAIPDNIEDRSKKDIPKTRIELPFWILIALIIVTVVMLLTTNIFSVLFGGKGEKLTYSSWLMPNTESDTVNNSVPIAELPREKPTQTTYGELKTGTPAPREDFRKQPSVPKITTVIPPPTAPKPRPPQNMVFIEASTLGFGRLRENPNPNVSLSSFYINKFEVTQEEWNIYMKPANCSTFGENLPVDNISWFDIAIYCNGRSEAEGLTPAYKIRGVGASRVVTCDFKANGYRLPTEAEWEMAAKASKLYNYSGSDDPDEVSWNRDNSSGKIHTPGTKKPNDFGIYDMTGNVAEWVWDWYDVNYIRSLPTFINPTGPETGTLKVIRGGSVMNGEGRNLNIMWREKGDPNRGYQYVGFRLVRSN
>NC_020449.1|WP_015424316.1|653208_656334_-|isoleucine--tRNA-ligase
MYKTIDLKESPRHLENRIREYWNKHDLVQKSIDIREGMPRFIFYEGPPTANGKPGIHHIMARTLKDVICRYKTMNGFQVKRKAGWDTHGLPVEIEVEKMLGLKDKRGIEEYGIEKFCQKCRESVFSYEKLWREMTELMGYWIDLDHPYVTLHNSYIESVWWILHNFFSRNLIYKAYKIVPYCPSCGTPLSSHEVAQGYKDIEDPSIYVKFKATDEENTYYLAWTTTPWTLISNVALAVHPEETYLKVEYQGQNLILAKARLQVLDEETKIISEMQGRELEGRCYQPLFNFVSVDKPAWYICLGDYVTMSEGTGIVHTAPAFGQDDYSLALKYNLPFVQPVDSEGKFTEAVTPWAHQFVKDADKDIIRHLKESGNLLKREQIKHSYPFCWRCKSPLIYYARESWYIKTTAYKEQLIENNRKIIWYPPFVGEKRFGDWLENNVDWALSRDRFWGTPLNIWICEKCGKLRSLGSIEELRKEGKMTSGKDVPEDLDLHRPYIDEVVLTCSCGNKMYRTPEVIDCWFDSGSMPFAQWHYPFENYENFEPELFPADIISEGIDQTRGWFYSMLAISTLLKGVSSYKSCLVNELILDKNGRKMSKSHGNAVDPIELMQNYGADAIRWYLLEVSPPWVPTRFDVDGVKEILGKFIGTLKNVYSFFATYANIDGFVAINYPYNWEREVEIDRWIVSRLHSLIIAVRHYFESYDFTKAVRAIQSFVIDELSNWYVRRSRRRFWASGFDQDKIDAYRTLYQVLVETAKLIAPFAPYLAEELFLNLEAGESVHLELYPEANKTYIDTKLEKKMQTVIDIVSLGRAARNECQIKVRQPLNEMFVPAKVKDDLADMIDLVKEEVNIRNITFVSEQDGFVHYELKPDFKLLGPKYGKKVQIINALLLQTPAEKVLQAFNTTGSYTLEIEGETIHLLPEEISVTIIPREGYVFANAKDLFVALDTTLTEELLNEGYARELINKIQFTRKEMNLDIMDNIIVKLVVPEAVAKAIQIYQNYILSETLGKELVFLEKPMANMQCLDINGNKIHLGIEKAV
>NC_020449.1|WP_018197019.1|656339_656705_-|hypothetical-protein
MFILDEIHLDVAKAIAEKNRKKKSCDHCYDRGWIGVSEQNLLVLCPKCVDREKAIEEWKEYVSEHKELKEHFSELFEEKKVESEQENPLKQKEFERTKNHPANPHNFVPGQRRSGHQKKIG
>NC_020449.1|WP_044278851.1|656994_657501_-|hypothetical-protein
MKIARHFFCELKRNREPAPQLCAVCPRIFKCKSFYAWHKIHHQEYLNFVVEISKKFPDKYTMEVHFMPEKQTFVQIVDMATGKIEKVVSLTEIEALSAEDKLALSRNKNLFIVTHRLEPIVKIELKKTVISAPIQFMESAPKEEEPIEEVTPLPINPEKSKPKRTPKN
>NC_020449.1|WP_162010048.1|658366_658645_+|hypothetical-protein
MGRRKEKRSRGLHFTRGLRHHRYHCVALRAFWKMGRRKEKRSRGLHFTRGLRHHRYHCVALRALMKSQPSKPSQPSQPSKPSQPSQPSYFFF
>NC_020449.1|WP_044278852.1|658754_659318_+|elongation-factor-P
MATMADIRNGMVIEFKDDLYEVIEFLHVKPGKGPAFLRSKLKNIRTGRVLENTFRESDTFNEVRIERTKKEYLYRDGDFLVLMDSDNYEQMHIDGSLLGDKENLLTENMEVIVSGTADGKVVGIELPTTVVQTIAECEPNLKGNTASGSGKVAYTETGLRLMVPFFVEPGDKIKIDTRTGEYIERAN

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Crispr_ID: NC_020449_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_9

643066-643149

Orphan

Consensus_repeat	Method
TGATGTTTTGACTCTAAACCGACCCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_9

>merge|NC_020449|9|643066-643149|CRISPRCasFinder
TGATGTTTTGACTCTAAACCGACCCTTTTATGGTTGGAACTATATTTTGAGGCTGTGATGTTTTGACTCTAAACCGATCCTTTT

>NC_020449|9|8|643066-643149|CRISPRCasFinder
TGATGTTTTGACTCTAAACCGACCCTTTT	ATGGTTGGAACTATATTTTGAGGCTG
TGATGTTTTGACTCTAAACCGATCCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278844.1\|622178_623588_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NC_020449.1\|WP_044278852.1\|658754_659318_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_020449.1\|WP_018197019.1\|656339_656705_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424320.1\|659330_659537_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424310.1\|628917_631095_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_020449.1\|WP_015424309.1\|624308_625406_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NC_020449.1\|WP_015424316.1\|653208_656334_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NC_020449.1\|WP_015424308.1\|623568_624306_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|293830
NC_020449.1\|WP_015424306.1\|621579_622182_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424322.1\|659818_662956_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
NC_020449.1\|WP_015424315.1\|651185_652973_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|335469
NC_020449.1\|WP_015424314.1\|643614_649842_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_020449.1\|WP_044278843.1\|621150_621579_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278842.1\|618970_621148_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NC_020449.1\|WP_044278851.1\|656994_657501_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_162010048.1\|658366_658645_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278850.1\|649890_650445_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_052293572.1\|633293_633872_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_020449.1\|WP_015424311.1\|631102_631750_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424313.1\|636280_642175_-\|choice-of-anchor-D-domain-containing-protein	unknown	unknown	gnl\|CDD\|380152

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278844.1\|622178_623588_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.000163474
NC_020449.1\|WP_044278852.1\|658754_659318_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.24562e-92
NC_020449.1\|WP_015424310.1\|628917_631095_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	4.29732e-08
NC_020449.1\|WP_015424309.1\|624308_625406_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.45404e-63
NC_020449.1\|WP_015424316.1\|653208_656334_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_020449.1\|WP_015424308.1\|623568_624306_-\|ribonuclease-Z	gnl\|CDD\|293830	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. It includes the C-terminus of human ELAC2 and Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	6.81674e-28
NC_020449.1\|WP_015424322.1\|659818_662956_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	1.40044e-30
NC_020449.1\|WP_015424315.1\|651185_652973_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	1.32382e-37
NC_020449.1\|WP_015424314.1\|643614_649842_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	4.1891e-06
NC_020449.1\|WP_044278842.1\|618970_621148_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_020449.1\|WP_052293572.1\|633293_633872_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.04196e-08
NC_020449.1\|WP_015424313.1\|636280_642175_-\|choice-of-anchor-D-domain-containing-protein	gnl\|CDD\|380152	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein. This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.	1.33877e-13

>NC_020449.1|WP_015424313.1|636280_642175_-|choice-of-anchor-D-domain-containing-protein
MKKLLLITLALVIAALAFAQTDITIGTGTSTGRYPFNDYFVYSRSQCIYLESEIGYPGTINKLRWYRSDTGADASAIGTTQIWLKTVTNTVFTDVNWEDPGTLVYEIANIDLGSGGGWYEVDITDFNYTGGNLLVSVYTQNAPYTAPHSYWYYTATTGYNRCRLGSSDSVNPPPLSLSTARPNIQINMTTSNPTSAPNPAVLVSPANDAWAMIGDILSWNSGGGFPSSYDVYFGTSSTPPLVSDNQTALTYTPTLAAGNTYYWKVVPANLIGEATGCPTWSFKTPTTTQVAESFENTSFPPAGWANPGTWSRSTSYAKQGVASAYKYPYDTSKYILSTPKVTITGTSTLNLWTLCSSTSGTIEVISSPDRITWTQLSSITHSATYTWYNTVVDLSSLAGNNYYLGVRTGGQSYTSYYVDLMIGPDITPEVPGAPTLSTPADLATNVNELTTFTWTAPTTGGVPTGYKLYCDTNNPPTTLKADLNALTYTLTTPLAYNTTYFWTVLAYNGVGNGPTATVRSFTTRADPIISTFPWVEDFGTTTNFPPLNWSRLTGLYPSETPTSTTSGWNYDDFANVVTTPQNMSGRLNIWSTSTKYWLVTPPIAIPGAGYELKFDLALTTYNGIATPPTPGEQADDKFIVLISDSALMTNPIVLREWNNTGSTYVFDNISPSGENHIISLNTYSGTKYLAFYGESTVAGGDNNVYVDNVTVREIPTAPIISCNPTSWDFGQTIINTTKTKDFTISNTGTGTLNVSSIVIAGDYYTLLTNPAPVGLTTGQTATFTVQYAPTAAGTHNGTVTITDNRGVTTVNLSAVCYDPTITSAQLPYSNGFEDTWTGTPPAPVLGWTVINANTDSYTWRRGPTYIDAHTGDYVAQGMGNTDDWLITPPIQASEDLRIKWWDAVESASYPNTYTVLVSTTDNNIASFTNNLGTFTCNLTTWTEHTLNLNAFTGNRIYVAFHQTASGSTYYDFGIDDFLLEAIPAAPVFNYSPTSIAFGTGFVNTPTAYQNVTVTNTGAGVLNLAVADVNIIGADASMFSFDPVNLPAELGSAQSVIIPVRYNPTAIGNHTATLQMVYNATNYDVTLSGNALGEHALYQGFEGDTFPPAGWATATTPWEIYTTYAHTGTKSVKSGYTAGTWWLMTPTLAIEDGANTLTFWYRDNSESSSWDYVDEYTYVMLSTTGNAPENFNTILWTGDYLTFTTTWQMASIDLSAYNGQNVVIAFKSVHTGGNFRIIDDVAGPNLYVPSGPPDPVILTYPANGATGIPQTGFNLTWTQATTGGIPSYYAVYMSQDEETIYDDYRWETTNTYFNPVTEGGITFNYLDRWYWTVEAINDDGSAVVEPAYSFEIQSDPRVNIPYAQDFGTDGTWPLNWSQTYSGGVTSNRWTLSNTNSAGGTAYEMMASWASGTGISRLIAPPLNTDGIANVAINFNTYYNDYAAGITAKVQYSFDLNTWYDTPWSIISGSGDVTGNQTALITGLTNHPTTYVAWVLDGNHYQFDYWYIDDVAISLPPDHDVKVVSYDVENQVVPENTVVTPIATVGNNGLNTETFAVTCTIGTYSSTQTVTGLALGATQQVTFTPLTPTLWSAESVVITTNLVGDEVPDNNTLYDALICLPLNVTGLANNAQTDQFVQFNLANPGVLNALPNGYTGSYFIAGADWKNGQWMGVEYDDGTLATDNYVNIDPLTGVYTDQGDLGAAIMGNAWDDTHDIMYGVSSTGYLYVMDPATGAIGVGDSLWYNLEGTNYSITNLGGLMIDIAYDNTNNILYGIDLGNDCLWTINPATYELTLVGFLGIDLNYAQDAAFDQDSGLLYLAGYAGGGALYWIDTTYGGAYKVGKFTASGYELTAFAIPYGTLATAPVATISGTGQLSWTPVTGAVAYNVYSADDPYGTYTLEATVRGTTYTGPTAPKKFYKVTAVGGRQQTNHQEIRFREPIKHNGKLNQNDRYEFGPVNGFSMRSK
>NC_020449.1|WP_052293572.1|633293_633872_-|transposase
MRTKMIHRSLNTYFHIVNHSIDSRKLFYDPGDYKTYLYLFKKELDYKVTVIAYCLMPNHFHFLLRQNAPEAISSLLERTHKRYARYYNKKYNFKGRIFRSPLHHIETPTENYLFNACAYIHANPVQAGLVGFPEEWEYSNFREYIRMRKGKLYSEQFLMDYIVNPEKYRLKVIDIARKKSMQRAFEKDSILF
>NC_020449.1|WP_015424311.1|631102_631750_-|hypothetical-protein
MKKFILPLLLILTVGMLAAVESEPSEVVGYVKYDCYTGFSYVAIPMGEGGNAEDLVSSNMPNITAIFKFVPSLQGWTSIEYDTEFQEWTDSMPVVPGDVLLLECTANTTFYSIGSLPTNYTYNITPGYNYLTVPVNRGNIQAAEQIGNEIGNINSIFRWLNISQGWESIDYDSEFMEWTDTLPASIGDVFLLDSSGTAIWPTASKTINMKISGKK
>NC_020449.1|WP_015424310.1|628917_631095_-|T9SS-type-A-sorting-domain-containing-protein
MKKVLIIIAIALSVLSIYAQTNTPRTLYVQARNSDNSAVAQTDQQYITFQATITSSPNTLTESSVGCGFTTLGGQTYLKIQLGNYTNQWQNGDIVTVNAQRSSDQATGSLNDIVLSGTGTIYWGRGTGYPGTPLIFTSLAPTTHIISGAITSQWDLSEVAISATDILPADITYAAGAYSVTVPDGWDGTVTPSKTGYIFEPASRTYTDVVADTPNQDFVMKTVVVPGVPANLSPNATTLTFTEPTAVTLTWDAVENAQGYRLIWNNGEIQDLPNVLSWTTPTALGAGTYTWKVCAYNNLATKKINTPVRVQMNGRSTSTANSPKADGGWAEASFIVEIETIPQNYDVTITSVPIGAAIYVDGSDSGAITPHTFTLAAGTGAVYTVVMDHFTWNPTEFVVTNISENMSCNFVGTPHYDIPDGVPTTPPGATVTVTITITGGNANYGSGVLPPWVNPSFVAVEQYFLSLIGTGPWTITFNTTAPWAAYFLGGIWHAVQNTGVTITFTIDGAKDVPNLPVVLGNEDPTLPVELSYFAATLTAENFVNIAWTTQTETNMNGFNIYRNDGSDNLASAIQIAYIPATNTSTTQNYKHIDKEVEFGHTYYYWLECVEMNNHSTFNGPSPIYVNGTTPPILPEYTKMYNAYPNPFRAGSGTTIAVEVKKGDSGTVTIYNILGQVVKTFSLTEGNNNLNWNGRDSKGNLCGNGIYFYKLSTNSLNQTKKMVIVK
>NC_020449.1|WP_015424309.1|624308_625406_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MENRIYEYLSVFIMAWLFVYGLTPFIIRLASALNFVDKPEARKIHLKNIPLLGGLSVATGFVLLCIYDVLITPGRYLDKPMLGYLAGSIIIVLIGIIDDHKGMKPAVKLAGQIAVSLLFIGTNFTIGELGLMFGSIYLSLPIMLLWMVGLMNALNFLDNMDGIISGMAGILGLGFFAFALVNTTQANQEAMALMALIALSFAGSTFGFLPYNFNPARIFLGDAGSMFIGYFLSSMGILMARYAANRYNDRFFYLLPVLLLSYAIFDISLVSYTRRRDGRQVTQGGRDHSTHRMNTILGSVKITAIMIYTINVLIALTSIIIFRIGNRHLLIITTVIFAGFFLFIGRKLDKVPIVVPANQQKHKKE
>NC_020449.1|WP_015424308.1|623568_624306_-|ribonuclease-Z
MELTILGSGPGLPQLDKHLSSILIRKENNLILADCGDSCAHRLLEHKVAAEELDAIFITHYHPDHLDGLFMVLQMLYLQNRKRDLLLFLPERPASFLEILQLMYTYPQKFGFNLLIRDIEQAELYFDWIYAVPNDHLYRYASIISEYKLPNQMKSWSLCFTGKQGKFVYTSDIETTDCIMDTLKEAHTVLVDAGHPEAEQIIKLKYTAIKKIILTHGITPELENRKEELNPEVFEFAREDVVYQI
>NC_020449.1|WP_044278844.1|622178_623588_-|hypothetical-protein
MLFTRYKIILLLLIVIILSGCEINRLRSAEELYQKNLYAAAIVELDDLIANAENRAIATRAEIVRSNCYSALAEAAVEKKNWPLAIRFFKLANSDSANLRLAEIYRDLAMEAEKEGNRIVSKSYLDAIIREVPESPLIPEVLYRRIGYFLDVKADNESAWNDYMRLFDNYPNSPYEILARNYVMRFIPGKLKYAEVLTEQGYYADALKELFEISKYPVVDMNQVNKLISDVYEKQAEELLSQQDYIEADRLFRIAMQYYPQKKESIIHRLESITNLFIQKGNSLLEAGDFQGALVHYRKTFEIIPDYPPALEAIDRLFTIQENIRKAADLYKQGEQLEATGKLNEALQAYNSAYALDPKPEYKQKANLVQNMIEANKNPAAFARKIITEYKGGLLTNRIQNQKKELLKRYKEYEIQDSGWKLMLSTGQYKYEARYDLLTPNETYLYVWQINLRDRSIIPLNKLSEALMQ
>NC_020449.1|WP_015424306.1|621579_622182_-|hypothetical-protein
MKARTKIFLFLLLCIICGTTALPLKAQSFDIKAFSDTTKYGWKNYLDRNAYRQDLKQRQDLLQIYELEAQPLNTNILKSAIIPGWGQFSAKESTKGTVILGTEIVLAGTSFYFLDRALSKYKLYKQATQVDEIERYYKDAQVPYQYSFILMGAAGIIWAYNIFDVIQSTQDYNVRLWEEIMERSKSGPVNITPTGIEVRF
>NC_020449.1|WP_044278843.1|621150_621579_-|hypothetical-protein
MVKHLAKIIILIMLITLIASCSLKRSNPLDPNGNGDITVPEPVTGISHTTSSQHQNPCWVNIKWVANSASNTDGYFIYRGMGYYSSYALVGDVKTNEFMHSSADDPSVQPKIDFYYRISAYKIYPEGKLEGRRSEPYWVRIP
>NC_020449.1|WP_044278842.1|618970_621148_-|UvrD-helicase-domain-containing-protein
MNNNFYASQLNERQLEVVTDTENPVLVLAGAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNKAARELQERLEKLLNIPVRSLWVGTFHAICCRILRFESAHLPFNANFSIYDEDTQKSLLKKIYKEYGFDKQSFPINNILTRISRYKNKLMLPEDIKFQGEDKDSEFATFLNIYRLYQQQLLLNQALDFDDILLWTAKLLLNNNTVREKYRAQFQYVMIDEYQDTNKAQFEIVHQIAGGHQRVCVVGDDDQAIYSFRGASLRNILEFEKDYNSVHSIRLEQNYRSTGNILALANAVIANNRRRHSKELWSELPVGDKPVLAVYENEIEEANRITDAILKLQRKGIPLREIAVLYRTNAQSRVFESALIQAEIPYSIVGGVQFYQRKEIKDLLAYLYVLSNLNDNESLLRIINEPARGIGQTSINRLIGFANKTRISLFSAIQNVEAIEELGNPAKKRISEFCLMLERWQQSVSRKPALEMVKTIVEELELISHYQNSNDPQDIARAENLVEFVTSVSEFSEHFYQENEREPLIADYLPYVALQTDLDRVKENMDSIRLMTLHNAKGLEFEAVFIAGLEDELLPHRMCMNNQDSIEEERRLFYVGITRAKNYLHLSYTKSRRLYDTFYFPVPSQFLTEVDSRLFYHSDGDFGIAQPPKRIKKTNKVITESQKYYKIGQKVFHPEYGLGVILSVDGEGEDARLTISFGNRLAKIIGRYLMKNEE
>NC_020449.1|WP_015424314.1|643614_649842_-|carboxypeptidase-regulatory-like-domain-containing-protein
MKKLLLIPLLVLIVAFAFGVEYAIGTGTSTQSYVPFYGLYNYSWSKTIYTKTEINAAGLTTAGNIDAIAFYVGNTPVNYEMLDQRVYIRHTTLATYGTATDETGTAYPNNANFTYVFQGNLVYNGSGWFAIFFSTPFYWDNENNIEILCENWDGAWVSGYPTFCYTPTPSNTYLSVYKALDAHFPTTADGVGTRTLNRPNIQLIKIDSAPNPAVLSWPLNNGFAFLNDKLQWKSGGGYPSSYDVYLDTVDGTTLVSDNQTGTTYTPTLEPETTYYWKVIPYNSFGPATGVVTWSFQTPTTTQLAESFENTTFPPLGWIRTTSNTTYWGRSTAASINGTASMYALTSTTSVYDISTPKCTITTGSTLNFFTRATNVSQKLQILYSTDRTNWTQIGSDITYAAANVWYNISIDLSNYAGEKYLAFRSPTHTTTGTIYVDAVFGPEFTHEAPGPSTLISPLNNSWVLPGNVTLSWNPPLTGGIPETYDVYFGATSDPPLVSSNQATTTYDVTVNEATTYYWKIVPGNIYGDATDCPIWSFKTPTATQLAESFENTSFPPVGWANPGTWSRSTTYKKHGTASAYKSGSTSTQYILSTPKVTITETSTLDLWTLCSSTSGTLQIIYSPDRTTWTQISSNITHTATYTWYNTIVDLSSLAGNNYYMGIRTGLQSASYYVDLVFGPEFTPETPGAPSLSVPADLATDVNEFTTFTWTAPTTGGVPAGYKLYCDTNNPPVTMLADVTSLTTTLTTPLDYSTTYYWTVSAYNGAGESPTATVRSFTTRNDPTIYTLPWLEDFGTTGTTFPPTNWFRGTGLLADPTTITSSTSYWIQDNWLNDTTVSPVNFAARMNIYSTNRSGWLITPPVQIPDTGYQLDLDIGLTDYGNYAPADAPTDDRFIILIGDGSSWSTANIVREWNNTGSPYVYDNIPYTGEHVTISLDDYTGIKYIAFYGESIATGGDNDFFVDNVMVRLTPAGAPDHVTLVSPINGATYIDPENAEVNWTPAITGGNPAYYEVLVGENPFNPEEGYFGEYSFETENTSLNLSEQDIILPFSSTWYWAVLPYNADGLCPDPLAHEFMVWSFTIAPDPTITSLPYIEYFDEVTAPTLPWGWKAYINSTSTSAYVRTYSSTTYAQSPPNSVQLSNSSDTNADLRLISPPIDLSARSINRIKLKFYARSSTAGYPILIGTVSAKDSTGIFTQITSINLTATKTEYVISLQDYVGTDQYICFKHGLGGSSRSLYIDDVKFIELIPADLAATSISGPTFIQAGNSYDYSISVFNEGTAEQNSYTVNLKTGTETLATLNVNAPLTSGATAQHTLSWIPANGGVYPLYGEVILAGDGNPSNNSSNIIDAYVVDPTMTIIPVGDDASTTTGNYLPLNMYYKNSVTEELYFTDEMHLQTGTITAIVYKNNFVETLLDKSVKIWMAHTDSTSLVNGWLPSANYTLVFDGTVTFPNGINEVVIPLDTPFNFTGGVLATRVNRPMDTSYYNSSDKFYYTTTAEHTNRSRYLQSDSETYNPLAPSAAGTAVGYVPNTYFVVQNAVMQQQAVLEGYVRNSVTNQPIVGATITLTERVSTTTNEDGFYHIGFWESLTVDATASMHAYYNLTITDIALTLGTTVTQNFNLVPMPRVTVSGIVTANDYPSGLVGTTVSISGIENYETVTGTGGAFTITYVLGSADTLSYALTVEKEGYQTYISALDVVETNVNVGTINLTEYLWTPYNLVATHSGNDVSLTWEPAGVPNYYFCDFESDNGGWVSSGYGDWEWGHYNLANYVDIDTYVDTPPQSAHSGTGMWGTVLEGSYSNCNTWSYLRKTFDLSIFSNPVLSFWHYMNGYNTWDYGLIKVNGTTVWGNSSSAVFMPWQELTINLSAYANMNSVEISFEWFATTTVSYAGWYIDDIYIGPASRNIVATQFASRNPGDRWFLNYSVYRFLTADEGTPANWSLLQTGLSDTTYMDTTFGTQPGGKYKWAVIANYSGGLQSNAIISNHLGKLAKPQNVVATKVGTTVQLSWNADPGADYYVIYAAGDPYGTFTVLDYENTTSYTISAPLAKQFFKIASADGTMPIAKELEPPAKSKK
>NC_020449.1|WP_044278850.1|649890_650445_-|hypothetical-protein
MRQIKFTGTTFGGMSGKRKENCNYFSALLLVPAILFFAVSYVIAILPFPSVYPMTNTVLFCFLTNELLLPFLSISPLLFLHLVNFIVSFIAPFSILINFSVASMASVFSVANKSSPYINEMQPSVFLPVYFSYNHRTLYRTTSERIEATFHFFLQPSKLVMAYLDYPLCNTQTLSCKAKVMPIV
>NC_020449.1|WP_015424315.1|651185_652973_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MLNKDAEGIKYIVEKEGREFLLKIFYKTSLSNIENIFSLQQRLQELNKLENKHLPKVTEIDPHFDPPYMVVEFIHGISLANLKTHNPEKLTEDFIRLVAIQIVNTAISLHQHQLTLSQLALTNIMINDNDEVIILSSAITWEERDEREEMFSIALVLAQALSQHNFYKTLYSQERLTTQKFEYIYGVSVPLNKILAECLHRNILQRYRSLDDLLNALINLPPVSECEIWTEPEKAIPDNIEDRSKKDIPKTRIELPFWILIALIIVTVVMLLTTNIFSVLFGGKGEKLTYSSWLMPNTESDTVNNSVPIAELPREKPTQTTYGELKTGTPAPREDFRKQPSVPKITTVIPPPTAPKPRPPQNMVFIEASTLGFGRLRENPNPNVSLSSFYINKFEVTQEEWNIYMKPANCSTFGENLPVDNISWFDIAIYCNGRSEAEGLTPAYKIRGVGASRVVTCDFKANGYRLPTEAEWEMAAKASKLYNYSGSDDPDEVSWNRDNSSGKIHTPGTKKPNDFGIYDMTGNVAEWVWDWYDVNYIRSLPTFINPTGPETGTLKVIRGGSVMNGEGRNLNIMWREKGDPNRGYQYVGFRLVRSN
>NC_020449.1|WP_015424316.1|653208_656334_-|isoleucine--tRNA-ligase
MYKTIDLKESPRHLENRIREYWNKHDLVQKSIDIREGMPRFIFYEGPPTANGKPGIHHIMARTLKDVICRYKTMNGFQVKRKAGWDTHGLPVEIEVEKMLGLKDKRGIEEYGIEKFCQKCRESVFSYEKLWREMTELMGYWIDLDHPYVTLHNSYIESVWWILHNFFSRNLIYKAYKIVPYCPSCGTPLSSHEVAQGYKDIEDPSIYVKFKATDEENTYYLAWTTTPWTLISNVALAVHPEETYLKVEYQGQNLILAKARLQVLDEETKIISEMQGRELEGRCYQPLFNFVSVDKPAWYICLGDYVTMSEGTGIVHTAPAFGQDDYSLALKYNLPFVQPVDSEGKFTEAVTPWAHQFVKDADKDIIRHLKESGNLLKREQIKHSYPFCWRCKSPLIYYARESWYIKTTAYKEQLIENNRKIIWYPPFVGEKRFGDWLENNVDWALSRDRFWGTPLNIWICEKCGKLRSLGSIEELRKEGKMTSGKDVPEDLDLHRPYIDEVVLTCSCGNKMYRTPEVIDCWFDSGSMPFAQWHYPFENYENFEPELFPADIISEGIDQTRGWFYSMLAISTLLKGVSSYKSCLVNELILDKNGRKMSKSHGNAVDPIELMQNYGADAIRWYLLEVSPPWVPTRFDVDGVKEILGKFIGTLKNVYSFFATYANIDGFVAINYPYNWEREVEIDRWIVSRLHSLIIAVRHYFESYDFTKAVRAIQSFVIDELSNWYVRRSRRRFWASGFDQDKIDAYRTLYQVLVETAKLIAPFAPYLAEELFLNLEAGESVHLELYPEANKTYIDTKLEKKMQTVIDIVSLGRAARNECQIKVRQPLNEMFVPAKVKDDLADMIDLVKEEVNIRNITFVSEQDGFVHYELKPDFKLLGPKYGKKVQIINALLLQTPAEKVLQAFNTTGSYTLEIEGETIHLLPEEISVTIIPREGYVFANAKDLFVALDTTLTEELLNEGYARELINKIQFTRKEMNLDIMDNIIVKLVVPEAVAKAIQIYQNYILSETLGKELVFLEKPMANMQCLDINGNKIHLGIEKAV
>NC_020449.1|WP_018197019.1|656339_656705_-|hypothetical-protein
MFILDEIHLDVAKAIAEKNRKKKSCDHCYDRGWIGVSEQNLLVLCPKCVDREKAIEEWKEYVSEHKELKEHFSELFEEKKVESEQENPLKQKEFERTKNHPANPHNFVPGQRRSGHQKKIG
>NC_020449.1|WP_044278851.1|656994_657501_-|hypothetical-protein
MKIARHFFCELKRNREPAPQLCAVCPRIFKCKSFYAWHKIHHQEYLNFVVEISKKFPDKYTMEVHFMPEKQTFVQIVDMATGKIEKVVSLTEIEALSAEDKLALSRNKNLFIVTHRLEPIVKIELKKTVISAPIQFMESAPKEEEPIEEVTPLPINPEKSKPKRTPKN
>NC_020449.1|WP_162010048.1|658366_658645_+|hypothetical-protein
MGRRKEKRSRGLHFTRGLRHHRYHCVALRAFWKMGRRKEKRSRGLHFTRGLRHHRYHCVALRALMKSQPSKPSQPSQPSKPSQPSQPSYFFF
>NC_020449.1|WP_044278852.1|658754_659318_+|elongation-factor-P
MATMADIRNGMVIEFKDDLYEVIEFLHVKPGKGPAFLRSKLKNIRTGRVLENTFRESDTFNEVRIERTKKEYLYRDGDFLVLMDSDNYEQMHIDGSLLGDKENLLTENMEVIVSGTADGKVVGIELPTTVVQTIAECEPNLKGNTASGSGKVAYTETGLRLMVPFFVEPGDKIKIDTRTGEYIERAN
>NC_020449.1|WP_015424320.1|659330_659537_+|hypothetical-protein
MGKAKSFAAKVAHDNSTEGKVICPVCNTEIKRIKLITNKKKNGGWTPQKEYAKICKCNEADILAGKNL
>NC_020449.1|WP_015424322.1|659818_662956_+|T9SS-type-A-sorting-domain-containing-protein
MPCLIWKRITLLITIIFVGSLSALVPPVPMYKNPPIAWEATRLEGSFFAEGTLKIGKRNLPNNILVLRVQFSDVSFRAQAGYPDNLVHDDVFFNRWMIHLKDFFLEASHLQYELDYYIYPQVLTMPHSLSFYGADGDNDIDVDLPQILPDILALIDEEVDFSQYGGIIIFHSGTGQESDINSIRPNEIWSTFLTRKKLQKYFDPENDLYAGYPTDDGSYLTNIIIVPEDEFQDYFPSAGEENASNYLFSMYGVLAHQLGHLLGLPTLYDNDDSNGISQGIGNWGLMGTGLWNGSGYVPAQLCAWSRYFLGWETPLVLFQNSNNNSVDYFLNHSPEAIRLYKVPISTTEYFLIENRQQNPDGSLDPLSNLPSYSFKLLPAGEQDYYEDNPLTPEDESLLPYFNFMENTYLGSEWDFFLPGLGGPIPDNSPFPVDGSGILIWHIDENVINANFTANFDRNYVNSNALHKGVDLEEADGIQHLDTAAYNIYKWGSPYDSFRAGNNNYFGNQHHNGMLSLPTSESYYGGIPLEITDISNSGNQMTFSVNFGWRLTTSYQGINPINACAIDFDGDGKDELFFPLPNGKIYIWENEELLSNYPIQLPFYMPYNYTWDGESIYLPLQRDEVCCLYKLNSAEHYYAFRSNAYSWLGHPVDIGENLALPLKINADDNAFAINLYNKTDMTVASLADYSGKFIANLIHYDNQLSVVYQNAEGEYWLSEIDLSDYDKKEIKLPIPADSIIVAVFKAPIADTENLIIQCPNSVYCLQGANIVEGFPYVHNLVAASDSCFIAPLTFADVDGNGSLDILIGGESDFAIIDYSGKLMNPENQNPELHTDFISAGIYAMDIDNDNNAEIIGNFKYNRLNIWEHNYRPKMGYPVSFAERSRTLPFVSQASDNNWYIYCATDNGLLFRNKLENKPQITPACNWICEYGNLRRSASYTKMELPNQYQTDELFVPGQVYIYPNPLKSIYRQKIQLNVMTSRDAELELSIFDISGTLVYRQKGYAKAYLKNLDIFDIPADKLCSGVYIAIIKSSTSSKRLKFAIEK

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Crispr_ID: NC_020449_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_10

683361-683906

Orphan

Consensus_repeat	Method
TTTTCCGAGGGGTTTACACACCCATCGCTATTATTGTGTCGCCCTGACGGGCTTT	PILER-CR

5 spacers

The CRISPR arrays of NC_020449_10

>merge|NC_020449|10|683361-683906|PILER-CR
TTACGAGGGGTTTACACACCCATCGCTATTATTGTGTCGCCCTGACGGGCTTTTTGGCAGAGGGCTAAGAGCAAAGGGCATAGAGTTTATTTTCCATTTTTCCCGAGGGGTTTACACACCCATCGCTATTATTGTGTCGCCCTTCGGGCTTTAATGTATCTAAACCCTCTAAACCTTATCAACCCTCTAAACCTTTTTTTCCGAGGGGTTTACACACCCATCGTTATCATTGTGTCGCCCTACGGGCTTTTTGGAAACCCGGAATGTGGAAAGAAAAAACACTCGGGGCTTACATTTTCCGAGGGGTTTACACACCCATCGCTATTATCGTGTCGCCCTACGGGCTTTAATGTATCTAAACCCTCTAAACCTTATCAACCCTCTAAACCTTTTTTTCCGAGGGGTTTACACACCCATCGCTATCATTGTGTCGCCCTGAAGGGCTTTTTGGAAACCCGGAATGTGGAAAGAAAAAACACTCGGGGCTTACATTTCCCGAGGGGTTTACACACCCATCGCTATAAAAGTGTCGCCCTGACGGGCTTT

>NC_020449|10|1|683361-683906|PILER-CR
TTACGAGGGGTTTACACACCCATCGCTATTATTGTGTCGCCCTGACGGGCTTTTT	GGCAGAGGGCTAAGAGCAAAGGGCATAGAGTTTATTTTCCATTTT
TCCCGAGGGGTTTACACACCCATCGCTATTATTGTGTCGCCCTTCGGGCTTTAAT	GTATCTAAACCCTCTAAACCTTATCAACCCTCTAAACCTTTTTTTCCGAGGGG
TTTACACACCCATCGTTATCATTGTGTCGCCCTACGGGCTTTTTGGAAACCCGGA	ATGTGGAAAGAAAAAACACTCGGGGCTTACATTTTCCGAGGGGT
TTACACACCCATCGCTATTATCGTGTCGCCCTACGGGCTTTAATGTATCTAAACC	CTCTAAACCTTATCAACCCTCTAAACCTTTTTTTCCGAGGGGTT
TACACACCCATCGCTATCATTGTGTCGCCCTGAAGGGCTTTTTGGAAACCCGGAA	TGTGGAAAGAAAAAACACTCGGGGCTTACATTTCCCGAGGGGTT
TACACACCCATCGCTATAAAAGTGTCGCCCTGACGGGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278853.1\|670671_674250_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_020449.1\|WP_015424338.1\|688173_688860_-\|phosphoribosylformylglycinamidine-synthase-I	unknown	unknown	gnl\|CDD\|235140
NC_020449.1\|WP_015424332.1\|680543_682754_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_020449.1\|WP_015424320.1\|659330_659537_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424339.1\|688864_689116_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|376904
NC_020449.1\|WP_015424335.1\|685216_687079_-\|glutamate-mutase-L	unknown	unknown	gnl\|CDD\|379405
NC_020449.1\|WP_044278856.1\|692569_695392_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_020449.1\|WP_015424334.1\|684073_685204_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424324.1\|663986_668201_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NC_020449.1\|WP_015424323.1\|663070_663973_+\|PorV/PorQ-family-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278854.1\|679591_679894_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424322.1\|659818_662956_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
NC_020449.1\|WP_015424328.1\|675252_677682_-\|choice-of-anchor-D-domain-containing-protein	unknown	unknown	gnl\|CDD\|380152
NC_020449.1\|WP_015424329.1\|677641_679573_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424343.1\|697914_698760_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238564
NC_020449.1\|WP_157859993.1\|687494_688202_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_020449.1\|WP_015424340.1\|689231_692573_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237554
NC_020449.1\|WP_015424325.1\|668240_668600_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_173307544.1\|695514_697038_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NC_020449.1\|WP_157859992.1\|687094_687493_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278853.1\|670671_674250_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.15686e-06
NC_020449.1\|WP_015424338.1\|688173_688860_-\|phosphoribosylformylglycinamidine-synthase-I	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	4.43984e-132
NC_020449.1\|WP_173307544.1\|695514_697038_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	3.81291e-162
NC_020449.1\|WP_157859993.1\|687494_688202_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	6.23131e-48
NC_020449.1\|WP_015424335.1\|685216_687079_-\|glutamate-mutase-L	gnl\|CDD\|379405	pfam13941, MutL, MutL protein. This small family includes, GlmL/MutL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family.	2.11784e-167
NC_020449.1\|WP_044278856.1\|692569_695392_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	7.78408e-07
NC_020449.1\|WP_015424324.1\|663986_668201_+\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.53487e-83
NC_020449.1\|WP_015424339.1\|688864_689116_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|376904	pfam02700, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase. This family forms a component of the de novo purine biosynthesis pathway.	1.46243e-32
NC_020449.1\|WP_015424322.1\|659818_662956_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	1.40044e-30
NC_020449.1\|WP_015424328.1\|675252_677682_-\|choice-of-anchor-D-domain-containing-protein	gnl\|CDD\|380152	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein. This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.	3.35637e-11
NC_020449.1\|WP_015424343.1\|697914_698760_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238564	cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	1.87853e-58
NC_020449.1\|WP_015424340.1\|689231_692573_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|237554	PRK13909, PRK13909, RecB-like helicase.	1.08216e-71
NC_020449.1\|WP_015424332.1\|680543_682754_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NC_020449.1|WP_015424332.1|680543_682754_+|copper-translocating-P-type-ATPase
MQRKITLGIEGMHCASCSARAEKALSQLKGVSEANVNLALEEAYIVYDDKQLTLADFKQAIEKLGFKVKETEADKESEQIRQMQVAKKKMGLSWLITALVLLLMIPDMVLGRAIISEQMDAWLMVILSLLAMIFPARQVYLSAYKAVKSGTANMDVLIAMGTIASLLAAPLSLFIKDIVANSFAGIAAMIISFHLTGRYLEAKAKGTASEEIRKLIGLGAKTAIVLEAGTEKEIPLSQLKVGDIFIVKPGAKIPTDGIVIKGNSLVDESMATGESLPVTKKPNDNVLGATINLDGYLEVQATKVGKETFLAQVIQMVSEAQHSKVPIQLLADKITAVFVPVVLCLVVIVFAVWMIFPDTMQNIASVIISVIPLQVPVKGLAAALMASIATLVIACPCALGLATPTALMVGSGLGAKKGILIRNGEALQRMRELNTMVFDKTGTLTNGIPQLIKTVCFQGTDKENRAIAASLEQASEHPLAMALVKGFELSELIAREDFISMPGKGVKGKINGKQYLLGNADFLQEEGIALPSFEDETLDYATQIGLATDRELLAWFYLADTIKDNAPQVIAELKGRGIKTIMISGDQTKTAIAIAEKCGIQEVLAPVLPGDKAMKIKELQSKDLIVGMVGDGINDAPALKQADIGFAMGLGTDIAIETADITLLRNDLKLIPLAIDLSQKTFAKIKQNLFWAFFYNLIAIPLAAFGVLHPVIAEMAMAFSSVTVVTNANLLKRKEN
>NC_020449.1|WP_044278854.1|679591_679894_-|hypothetical-protein
MVYYLDPKPNTNIKKIATSCKGAEKISFPNFFIKIVTIHSKTQPSLSSLGSAVLAFFISNCRKQTWEYNLNYNSFIQKTNQLSKFNRSRAYFCPNLIFNY
>NC_020449.1|WP_015424329.1|677641_679573_-|hypothetical-protein
MKKNILLFSFLVILLGIFSTTWGDLITIGDSNATTNDQIPINRFYNYSTYEMLYTSSEIGAPYIINKVAFYKYSGSTTVTINNVSIYMMISSASSLPTTTVSSPYTGYSLVYSGSFPNTLSSGWEEVTLSSPFEYDAGGNLHILVVKGYEFYSSSRPYYTYNSTSTTYLCRGNSNDGSQPSSLYATYNRPIVRFDVSPLVTEQPPNPATNPSPAHASTNIPKNVTLSWSSGGGAPTDYKIFWGTSETSFENEQSGITTTSFSPSNLQYSTTYYWKVDPHNDYGYASTIATLPVWSFTTMADPTITEFPHAESFDGTTFPPFGWTHQIGSGATGWQRSTGSSYPTVSPYSGAGMLYYNSYNLSDGSNASLFSPPINAGDANMVYSTSFWMYRYKSSYSSYTDKVEIYSNTTPSLTGATLLGTIIRDYDQAPVETGNGWYQYTFEIGPGAENLTYYVIFKAISNYGYNINVDEISFISVQGGNPPNPAINPSPANNATSVAITTNLSWSSGGGAPIGYKIYLGKDAESMELIANQAETVFDLAENLLFGSSYSWKVDPYNDYGAASDAGEIPVWNFSTASGIAISPSPYNAATNQDATNRVLNWADVTGASGYKVKVGTSSGASDLVNMATVNESQYYSFFKLAL
>NC_020449.1|WP_015424328.1|675252_677682_-|choice-of-anchor-D-domain-containing-protein
MKANITHSSNWPYSTTIYWTVFTLNGTQEVQGTEWSFTTAADPTRSIPYLETFDASTSLPANWTGSFSVSSSHGVSSNGLYKNLYSYSTSAYVTTPPVGPLTDNTTLQFDYRYVEFTGYPNTAHTLVAGDKLEIQISTDGTTFTTIHTIDSSNHITSTSFATCSVPITQAKVSQGDIIKAKFLATRGGGDYYLDIDNVYFRHISAEPAISITPESKSFGELQINTVSSAQVFTIKNDGGGTLTINPAIELIGANVDQFQLTDTNSYPCELGSGETITVSVAFAPTSLGEKTASLTIVDNLSKTEHNIPLTGTGADYSISVPYLNDFQSNINGWTILDVNNDGKKWTLTEEISPNKAMKIVYNPSLTMDDWFITPPISLTKDTTYNIRYEYRVESDTYPENLGVYIGSSPTPAALNTLLNDHFEISNTTFSLEQATFTPQTTGIYYIGFHGYSDADMYNLYVDNFRITFENSDIVSGIASGGNVSIIIPPVHSISPTIDISNLPQSDATVTVIAGYADVDLPNAGLSLTLTGTSFSGAIITINHNLGFVPAQIAYRIEPGTWNLLTSSSPGVSNWNETTVTFTLSGKAAGDLCFVFPQQEGQTLPVTLSNFTAVVTSENFVNIAWMAETETNHSGYNIFRNEAKDLENAVKINAQLIDKGTAVGTQISYLYTDFEVYTNMVYYYWLESVALDGTSQFYGPLTVTIGDPTQEPMPPSVPMVTKLYNAFPNPFNPNTNIRYSLKEAGKVKIEIYNMKGQRIKTFTQEHNSPGYYQVSWDGRDENGRSVASGIYLYRLTTGKYTSAKKMVLAK
>NC_020449.1|WP_044278853.1|670671_674250_+|T9SS-type-A-sorting-domain-containing-protein
MKAQIYKLLLLLIFSVTAIAAFSTVSEYSFASTLGTFTEISGGTIHGTSANDNECFLAIPLGFTFTYNGVDYTTISIASNGFIAMGDTVVTSNVPISSNTSTNNVIAVLARDIKSRADGTLMSLSSGTAPNRVFTIQWKNWRRTPTATANDDFTFQIQLQENGNNVVFVYGPFTAVTAATSATVQVGLRGDSNNDFNNRLTTTDWSATTAGTANNSTCTLSATVFPANGLTFTFTPPITGEPPLAAQNPHPANGAINVPIATNLSWNSGGGIVDGYKVYFGTDNPPTNIVNGTTQTVTVYDPVNDLTYSTTYYWKIVPYNQFGDAVDCPVWSFTVLADPTVTTYPYEQNFDSVTPPDLALGWTVINANNDTYTWQSYNGNSQTSPNSMRIRYNSTLAMDDWLFTPPLVFTNTHNYKIKFYYCSSSATYPEKLSVYWGTTPAVASMTNLLWENLNIINTAYEAAEIIMPAVTGGTYYIGFHGHSDADRFYLYIDTFSVSDIVEQINPPQNLTATIQNYYNVHLAWQAPVSSFGTRDLLGYKVYRDGSLINTISNPATLTYDDLGLEVGTYSYTVTAYYTTGESVPAGPVSVEIVAPLDPPLNLTATVQNNTNVFLDWDAPSVIPPPTSFNDSFESYENFTINFAPWTLVDVDQSTTYGMQGISWTNAYAAQAYIIFNPSATTPAITDLTAHTGNKMAACFASTVPPNNDWMITPQLSITAGNVLKFWARSYTEQYGLERFKVGVSTTGTTPANFTIISGTTYIQAPVTWTEYTYDLSSYAGQNVYIGIQCVSNDAFIFLVDDVFIGTPTTAKSYPYVASVSGTIERVKGVSVPTIRQETKNNDRALLGYKVYRNGTLISTINNPATTDYTDLDLANGTYNYGVTALYTTGESVPATVSVTINYQPTPAFFTDDFESYANFVTTFAPWTTVDVDLADTYGIQDVDFPGSGDAMAYIIFNPSATVPPLTTLTAHSGSKMPASFAATTPPNNDWMISPRVFLGTGSFVKFYARSYTAQYGLERFKVGVSTTTPNPANFQFVSGATYVQAPVTWTEYTYDLSSYDNQNVYIGIQCLSNDAFIFFVDDVSIHGVNGYDNNDNNAPVVQTELKGNYPNPFNPETTIAYSVKEHIPVNIEIYNIKGQKVKTLVNETKAPGNYTAVWRGLDDNNHPVSSGVYFFKMNAGKYSSTKKMIMMK
>NC_020449.1|WP_015424325.1|668240_668600_+|hypothetical-protein
MFWKVIAAIFCSPVFTLILCIIFLLLNILDGHSTYLVLKPDKYHREKNPLARWVFQKLKIPAGIIIFKTILMSILILAIAYFTAWEPLTVNIAMLIADLLFLVVVLHNYHLYFRLSRKE
>NC_020449.1|WP_015424324.1|663986_668201_+|S8-family-serine-peptidase
MKDFWTIFKLCKFWFLLLFLSLGIFVFAEITPGQLIFKTTIPVEIKGTQTGLSAFDNFLSQKGVTQIKPIKGMHQPTYYLANVSDVPPAEVLEQLSFPGIQYVQPNYLRKLHSTPNDPLYSQQYHYISSIPAAWNYTVGSNYVKIGIVDSGMLIHHPDLWQNLAINTNEIPDNGIDDDHNGYIDDWCGWDFTDAPEMAGNALGDFLDQDNDVEDENFHGTHVSGIAGAVGNNGIGVVGVCWNVGILPIRAGFRTLDNQGFLQDDDVSAAIIYATDNGCNVINMSWGDPNYSAIIADACEYAYNKGVVLVASAGNDAGPGLSYPAKLSTVISVGSINIAKQLSTFSSYGDDLDLVALGERVLSTYKLTTDEQYFYMDGTSMSAAFVTGAVALLLSLHPGLSPAEVKARLISATDDLAPVGFDIRTGHGLLNVKKLLDNLDPPFLEITSPQDQLGISGSVPIIGSVYGSDFANYTVAYKKEKDQNDTNWKDVTEHIETLTKYSQPVHNDTLAIFYLPNNFPEGKYLLRLQYEKTLHNMNRYNIYRTVIVDRTPPVLRTETISYFTRWTKLNLEYYVAANFDEIVNTQLKITASDGLIYNVYSSLADSIQIWKLPSSIPEGMIDVQFIATNIAGLTFVSDIFTNFLNIHYYLIPQYGYTKEIIGPPQKPLLRKRDYNGNGIAEYVAMEIPASGYGSVKAFEPYPGGHIVTNDFGDSFWPLDIGSTYTTGSKSELLLLRGENAEMWLTPIGGNYPSNCNDSLVIALDTGIAGGVMADYDNDGKTEILLVKNLPAERVIQAYKRVSSGALAPRNTISNPTSTYSRNNFVPTIIVDNFDGDNYPDILCADTDGDVMIFEIINATQHQLCWTTRLPIGNTYSLTAGDFNGDGHKDFFVAGYVTDIVNQNLNFWLGEGFRNIGNNNYTSMGSIMFNEVSSMNSITSDDLDQDGCDEIILAITPNLYVLKYINGKFVPIFYDVSSHNYQVSTWEDENGIIRILGNVKTVGDNPALAEWTPEEPFTGPPTPANLTVKPLNESSIKVSWTSTGAPEYALYRKDEEGNVTRNILTGVTSFTDTNLQQGKVYKYAIASCDPSYTPIESIIGPWIEGIPLPKPELVQITFAGQKELRLFFNQEMPGAIINPACYYVSNGMGNPVSANSISANSGVQLRFRNNFPAIDSLFVLELRNIYGISGVEPETPFYYFAYIEDIIPPEITGVKVLPSKQEITIQFSEEISSLPALYPANYNLHCPKNDPDNKIVSVSHSVDTVTIKFAEKLKFSNYAYYLEVNNITDLAGNLISPQGNLVRFSIQNLDNLENLNVYPNPVTSKHSPQVTFINFPVNKKGKIAIYSSSGQLVFQDDIGPFSVENNNITYTWNLRNNNQRPVSSGIYFYVVEMGGKIKRGKLAIIK
>NC_020449.1|WP_015424323.1|663070_663973_+|PorV/PorQ-family-protein
MKHTIITLCIMLIGGMCFAGIDENAGTYGYKFLNVPYGPVSLSLAGRGVFSIDNPGSFLLQPAASCMNDQHLLGITHNMWLADTQANMIAYSFAQRKSHFGIAMRNLDYGEIENRDDMGFLIGNYHPLDIDVTANYAHRVTPSIYAGANLGILYQKLNTASSLALHTDLGFCWLPPVKDAKITLVGRNLGIANHTDEERVKLPVCFELDINKGFSVAEQHLILGGSVIQTLDEDLKGNVNLECELFQLLTLRGGYLLGYDAQDFSAGFGVKYKNISVDYGYGAFNSELNDVHSFGVTYRF
>NC_020449.1|WP_015424322.1|659818_662956_+|T9SS-type-A-sorting-domain-containing-protein
MPCLIWKRITLLITIIFVGSLSALVPPVPMYKNPPIAWEATRLEGSFFAEGTLKIGKRNLPNNILVLRVQFSDVSFRAQAGYPDNLVHDDVFFNRWMIHLKDFFLEASHLQYELDYYIYPQVLTMPHSLSFYGADGDNDIDVDLPQILPDILALIDEEVDFSQYGGIIIFHSGTGQESDINSIRPNEIWSTFLTRKKLQKYFDPENDLYAGYPTDDGSYLTNIIIVPEDEFQDYFPSAGEENASNYLFSMYGVLAHQLGHLLGLPTLYDNDDSNGISQGIGNWGLMGTGLWNGSGYVPAQLCAWSRYFLGWETPLVLFQNSNNNSVDYFLNHSPEAIRLYKVPISTTEYFLIENRQQNPDGSLDPLSNLPSYSFKLLPAGEQDYYEDNPLTPEDESLLPYFNFMENTYLGSEWDFFLPGLGGPIPDNSPFPVDGSGILIWHIDENVINANFTANFDRNYVNSNALHKGVDLEEADGIQHLDTAAYNIYKWGSPYDSFRAGNNNYFGNQHHNGMLSLPTSESYYGGIPLEITDISNSGNQMTFSVNFGWRLTTSYQGINPINACAIDFDGDGKDELFFPLPNGKIYIWENEELLSNYPIQLPFYMPYNYTWDGESIYLPLQRDEVCCLYKLNSAEHYYAFRSNAYSWLGHPVDIGENLALPLKINADDNAFAINLYNKTDMTVASLADYSGKFIANLIHYDNQLSVVYQNAEGEYWLSEIDLSDYDKKEIKLPIPADSIIVAVFKAPIADTENLIIQCPNSVYCLQGANIVEGFPYVHNLVAASDSCFIAPLTFADVDGNGSLDILIGGESDFAIIDYSGKLMNPENQNPELHTDFISAGIYAMDIDNDNNAEIIGNFKYNRLNIWEHNYRPKMGYPVSFAERSRTLPFVSQASDNNWYIYCATDNGLLFRNKLENKPQITPACNWICEYGNLRRSASYTKMELPNQYQTDELFVPGQVYIYPNPLKSIYRQKIQLNVMTSRDAELELSIFDISGTLVYRQKGYAKAYLKNLDIFDIPADKLCSGVYIAIIKSSTSSKRLKFAIEK
>NC_020449.1|WP_015424320.1|659330_659537_+|hypothetical-protein
MGKAKSFAAKVAHDNSTEGKVICPVCNTEIKRIKLITNKKKNGGWTPQKEYAKICKCNEADILAGKNL
>NC_020449.1|WP_015424334.1|684073_685204_-|hypothetical-protein
MGQAYSAGLTVTDNIILRKERILPLKGQVLVKKGDKVKAEDVVAETLLPGKVIPFNLANKLGVTPQQLVNYIKIKPGDKITQKTVLAETKGLFGLGIMKTEILSPIEGEVENISSVTGQILLREPRIPVQVKAFIDGLVTDIIEEEGVIIENKSAYIQGIFGLGGETFGELKMIAESPDDELDVAKIDASCAGKIIVAGAFAPYHAIDIARKNGVKAIITGGIDDQDIKKLLGYDIGVAITGHENIGITIVCTEGFGRINMAQKTFNLLKHFEGYKTSIHGRTQIRAGVIRPEIIIPLQFEEQELVAKEVSMPILEIGTVIRIIRQPHFGHIAKVTALPEELTKVESETLVRVLEAEFENGTKIIVPRANVEVIES
>NC_020449.1|WP_015424335.1|685216_687079_-|glutamate-mutase-L
MQYDEKRLTRIVATDCGSTTTKAILIEWIDGEFRQTIRGEAPTTVEAPLNDVTKGVINATQELEELARLKYHNPNIKFMENGEFVIPRKGDVGVDAYVSTSSAGGGLQMMVTGVVASMTGESAERAALGAGAIVMDLIASNDKRMNHEKIERIRELRPDMILMAGGEDGGTVKHVVEMAELVASADPKPRLGSGYKLPVIYAGNKDAREEIVKTLGEKVDLIITDNIRPKLEIENLLPAREKIHNLFMEHVMKQAPGYNKLMEWTVGPEHEQVPIMPTPAAVGNIMQAIAKEENIEVVGVDIGGATTDIFSVFTKDFIFNRTVSANLGLSYSISNVLASAGLENIMRWVPFDIDESELRNMIKNKMIRPTTIPSLLEELVLEQAIAKEALRLAFEQHKSFASSLKGMQKQRDISEAFSQSVSGETIVNMMTLDLLVGSGGVLSHAPRRNQTVMMLIDAFLPEGITRLSVDSIFMMPHLGVLSEISTKAATEVFRKDCMIYLGTCVAPVGKGKIGKPALYAKLELPDGSVFEEDIPFGEMRLIPCEIGQVAKATLKTHSGLILDADRKKELTVDLHGGKVGIVLDTRGRKPFVLPADKNERISALKKWMKALNAYPEHILS
>NC_020449.1|WP_157859992.1|687094_687493_-|hypothetical-protein
MNKEFWEIRPETSESEINEMIEKVAKFIAERHLAPAGILLFESVRPLHGIGSQALFFILPVAEIIFDSKKYQQFAIMMEDENNIKKLIKRMDELDEIYTRERRQENKLKKQHRKAKRKAFYHKIFKRKNKTA
>NC_020449.1|WP_157859993.1|687494_688202_-|ComF-family-protein
MLPLKMLWNKILELLIPPACLVCGNRIDDRYQVICPDCEAKLYLIGEGTCPVCGSENKELPCEVCAEGNFAFDSAISVFRYSGPVRDLIHILKYNGYSSPAGYFALPIAELIESKPVLKNYDYICAVPLHRVRKRERGYNQSDLIAYSVAKLIDMPYFNPVKRRINTLSQTLLSRDHRIKNLAGAFQVKNKNLVAGKKIILIDDVFTTGSTLNEIAKTLRSAGADKICAITVARA
>NC_020449.1|WP_015424338.1|688173_688860_-|phosphoribosylformylglycinamidine-synthase-I
MRISVVTFPGSNCDYDTYRVCKSRGNQTKLIWHKDSDLEKPDLVILPGGFSYGDYLRCGALARFSPIVQEVIAFAQKGGLLVGICNGFQILTECGLLPGTLMMNANLHFICQHQYIRVETEASPFTQGIGKGKVMDIPIAHKEGNYYIDPEGLKQLIANDQILFRYCDKQGNINIESNPNGSLDNIAGICNKQRNILGMMPHPERSATETVPTKDGRWIFAAIENALE
>NC_020449.1|WP_015424339.1|688864_689116_-|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MLKAKIYVQLKANVLDPQGKAVTNSLHNLGYTDVIETRISKYIEMSFRNDNREKVSQEVEKICQDLLANPNTETYHYEIIAEE
>NC_020449.1|WP_015424340.1|689231_692573_-|UvrD-helicase-domain-containing-protein
MTENNCRIICASAGTGKTYRLSVEYLSLILKYYSKNEFSLDNILVLTFTRKATAEIRDRIIKHLELLVSEPETEEEQKKQQELLLNLRKLNKTKEIPLSEQERNLLLSARKELICDQSHLQVMTIDSYTGQIFRNIVRPLKNIEHYEIDTEAVKKIMPFLLDHLMEPDLREKIKNLLSRKVSRSLDEYTKFFCSLIEQRWLFYMITKRQAVHNSSFSGTLMNLNPETEPAEFYEKFLKEMQRIIALVANICSDLGKASLEDYFNKDFRNLAVKGALTPVAIFNNLKQLNSDEAEKLLYILDKGTIWNKQKISNKKFEAENIELENAQNEAKHHLADYLIWKLYLPEQREIEELWSSVLERYDNLIYRYKNLTYDDITWFTFETLFSSEPPFLNPEDAVSATEFYQFLSHRTRFLLIDEFQDTSLIQFNILKPIIEEITAGEGSKPFGGLIVVGDEKQSIFGWRGGERDLLLNLKDIFPALGDLTVEALDKSYRCGPTLMEFINQVFMNAELCSLLQKKEMKWDYTHIESVEITKEPGTEIEFCLKNFSTSVTNADNEKDIYTDFVERMVLPALEKDDSGSIAILCRTNEELTKIQQALDISGRASLFQPNRSIIEHHYVAPLLSWLRFLAWGDWIDFIAFLRSDYVLINTKVLKQTLNIISRTLEIQKERQKPVRPDFSTIPVVNEFYQLSWEQENKKATEICREIIDLCLPSKQLSERDYLNLHRFLDILSTRQLTDPDKGISFPDLLTYLKDNANAEDFKQVSINADDSLQLLTIHKSKGLQFKRVFVFCNLSGKHSTDSNTLNWALEYEGNTFNRIRDYGISLHYQKILKSSSYANLYLQNQKRKQLEELNNLYVAFTRAEQKLHLYFGYKLKEGWNDYYNANKDDNLTVALCNSVFDYFKDSPFNERGVYYKKSFLQENKKETSFSSEPPKSNLEQSNYHLNIRHHRPVNWNKLVPVELPAVKDLKTYYLTERPNLIGDLLHFYMSFIIRNTPKEHNYAYYRCLNRYGAIFTVFQIEQLADRCKKVCDSNPYLFTSGWDKIFTEQEILWGSKIMRIDRLMVNTAEKVVLIADYKSGDIYDFNQLANYKTALSKLPVFKGYNIDTSIVIV
>NC_020449.1|WP_044278856.1|692569_695392_-|PD-(D/E)XK-nuclease-family-protein
MKFINYPLSENLDTIVQELAKPDSILIFPTLSAAKRASREYLTNWDLSWRGFYSMEELRSALILPKQPLLTDEKRLLCLFMVMEESERESFHIYNYGDIVDWGKRFFDFFEEFCEECIALSDLEEMANSGAFPMQEWQEIYLQKILNIRSNYQKYINALGFSDTIFYLNADNISVPWQNCDIYYINQYYYSGLEKQQIKALEDSGNRVTIITHGLETESNGENWKIKDFNLQESWNSLKKKPSIEIRETDNETQMALSFLSWNLEQDCHNCAIIDSTFHLKSYSHYFPEEHFAKPDSYSFCEGTIYKMLSAIATGLKATKDTNGYLPIKILANYISEDWFCHYFYAEQGNLKLDDYISQLRLELGFLINWDYLYVDYALFLTADLPTLKSLVWEYYNLINAFSKVQNLKELCNLIDSPNCLQLNNLLEDNEKLYTDILPVFWERMANFMAIENLGLVNSWKQIFAEDSIGLNLLDLLLNFLKTGKISYQRNEALTPEWEISNLLDARNRSFSTVAFFQMIEGIIPSSPTPVWLFNESQRAKLGLKTFNDIRNWERYYFCRLLLCSERAICFSYVNQERDISPSSFLGELEELLKNEEPDLLKKRKVLVSLPDVYSWELLNKTIPELEDQEVCNINKDLPEDFFIIPSDPIADFPMNNQINFSASALIQFLKNPFLWFVENKSKLSIQNWEAEETISYKLFGNIMHTYFSSTLGELKGIHESHTILETLFGNSKKLEEQLKNVIASEKMIYQIPKNYNAVFLGEILAKKLSESLFFFYQDWLKKQVEGRKFILIPEEDKISRAEMKHKQLGKVNWGNKEYIIGIRGKADLRIEMENKALIVDFKTGSHDYRQLCIYEWYYYLLDDVSAPNDVSSIFWNILDPTDKVEGVNEEKRNKLKQQILDNLEFCLANGYSTITKATDRQRLQNITRADLISRKGGLK
>NC_020449.1|WP_173307544.1|695514_697038_-|cardiolipin-synthase
MGLLISLVLIASLTQIIVGGSVLDTFSKVTLRIINILFGISIVLIILIVVMENGSPATTMAWILVLIFLPIVGFILYLFFGRNWRKKRLFSKKGYADTKLLLSYVHNHPSDRENNWQNDLTARLYNLLKNNSKATLTVNNNVTLYNDTGKAFKAILEGINSAQHFVHLEYFSIFADETGYTLQKLLIQKALEGVEVRFIYDDVGCWMLKKSFKQELRDAGVEFVPFMPVWIPFLNSRLNYRNHRKLVIVDGNKAYLGGMNIGDKYLGKKRYYGYWRDSLAEIEGKAVNALQAIFLADWNFVTGKNLMQEDLLHKYLPVISPDKQRFLPMQIVADGPDSDYDSIMQLYFAAITYAKHSIRISTPYLILNESLLSALKTAAISSVKVQILVPDKPDHFLVYWASRSYFQQLLDVGVEIWTYHKGFNHSKILIVDDEFLLIGTANMDLRSFKQNFELAAAIYDKTVCAEAIKQFEEDLLSSSKIIPEKFRQRSMLQKTKESICRLVSPLL
>NC_020449.1|WP_015424343.1|697914_698760_+|ABC-transporter-substrate-binding-protein
MKKSGILTVIIIILFALSCKQTGNNQKKGIVVLSPEVAEIICALNAEKEITGITAECNYPPSLQQKKIVGSFSSIDKEAIIALNPELIFCSSLEQENIAYDLKNLGFQVEVIYPKGINEMLSDIERIGTLIRKKEEAAKLVNYLKEEIEKIKANAQGKLRPKVYLEIYRNPLMSVSDSSFIGELIELAGGDNIFSTLERDYARINPEAVIAAKPDIMICYSQETLKNIINRKGWQNIPAIQKRRIYFEKDINPDLLQRATSRCIEGMKELAKIFAEWREEQ

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Crispr_ID: NC_020449_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_11

748794-748879

Orphan

Consensus_repeat	Method
TCATCCTGTTCATCCCCTACCTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_11

>merge|NC_020449|11|748794-748879|CRISPRCasFinder
TCATCCTGTTCATCCCCTACCTATTATCTCTCTGCCCTAAGCTCTCTGCCCTCTGCCCAAATCATCCTGTTCATCCCCTACCTATT

>NC_020449|11|9|748794-748879|CRISPRCasFinder
TCATCCTGTTCATCCCCTACCTATT	ATCTCTCTGCCCTAAGCTCTCTGCCCTCTGCCCAAA
TCATCCTGTTCATCCCCTACCTATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424376.1\|733182_738636_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|199211
NC_020449.1\|WP_015424381.1\|746534_747581_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NC_020449.1\|WP_015424377.1\|739359_740481_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349920
NC_020449.1\|WP_015424391.1\|756927_757647_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|99778
NC_020449.1\|WP_044279194.1\|740480_741461_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_020449.1\|WP_044278868.1\|741697_743560_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NC_020449.1\|WP_015424386.1\|752773_753148_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_020449.1\|WP_015424375.1\|731695_733117_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NC_020449.1\|WP_015424387.1\|753217_753988_+\|glucose-1-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133015
NC_020449.1\|WP_015424382.1\|747593_748709_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340837
NC_020449.1\|WP_015424373.1\|730652_731300_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100079
NC_020449.1\|WP_015424390.1\|755596_756913_+\|lipopolysaccharide-biosynthesis-protein-RfbH	unknown	unknown	gnl\|CDD\|237960
NC_020449.1\|WP_015424383.1\|749311_750976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200557
NC_020449.1\|WP_044279195.1\|753992_755054_+\|CDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|274236
NC_020449.1\|WP_015424372.1\|729453_730656_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_020449.1\|WP_157859994.1\|748886_749057_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278873.1\|751233_751593_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424385.1\|752234_752681_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278875.1\|755043_755607_+\|dTDP-4-dehydrorhamnose-3,5-epimerase-family-protein	unknown	unknown	gnl\|CDD\|380337
NC_020449.1\|WP_015424380.1\|744063_746538_-\|signal-peptide	unknown	unknown	gnl\|CDD\|225829

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424376.1\|733182_738636_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|199211	cd10913, Peptidase_C25_N_gingipain, gingipain subgroup of the Peptidase C25 family N-terminal domain. Gingipain, produced by Porphyromonas gingivalis, exemplifies the Peptidase family C25, a unique class of cysteine proteases. P. gingivalis is one of the primary gram-negative pathogens that causes periodontitis, a disease also associated with other diseases such as diabetes and cardiovascular disease. The gingipain subgroup contains extracellular Arg- and Lys-specific proteinases called Arg-gingipain (Rgp) and Lys-gingipain (Kgp); RgpA and RgpB are homologous Arg-specific gingipains encoded by two closely related genes, rgpA and rgpB, while Lys-specific gingipain is encoded by the single kgp gene. Mutant studies have shown that, among the large quantities of proteolytic enzymes produced by P. gingivalis, these three proteases are major virulence factors of this bacterium. All three genes encode an N-terminal pre-pro fragment, followed by the protease domain; however, rgpA and kgp also encode additional C-terminal HA (hemaglutinin/adhesion) subunits which consist of several sequence-related adhesion domains. Although unique, their cysteine protease active site residues (His and Cys) forming the catalytic dyad, are well-conserved, cleaving the C-terminal peptide bond with Arg or Lys residues. Gingipains are evolutionarily related to other highly specific proteases including caspases, clostripain, legumains, and separase. Gingipains function by dysregulating host defense and inflammatory responses, and degrading host proteins, e.g. tissue, cells, matrix, plasma and immunological proteins. It has been suggested that they enhance gingival crevicular fluid (GCF) production through activation of the kallikrein/kinin pathways, thus increasing vascular permeability and causing gingival inflammation, a distinctive feature of periodontitis. RgpA and RgpB are also able to cleave and activate coagulation factors IX and X in order to activate prothrombin to produce thrombin, which in turn increases production of GCF. The gingipains also play a pivotal role in the survival of P. gingivalis in the host by attacking the host defense system through cleavage of several immunological molecules, while at the same time evading the host-immune response by dysregulating the cytokine network.	9.68175e-112
NC_020449.1\|WP_015424381.1\|746534_747581_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	5.86851e-73
NC_020449.1\|WP_015424377.1\|739359_740481_-\|amidohydrolase	gnl\|CDD\|349920	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins. Peptidase M20 family, aminoacyclase-1 YkuR-like subfamily including YkuR and Ama/HipO/HyuC proteins, most of which have not been well characterized to date. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney suggest a role of the enzyme in amino acid metabolism of these organs.	3.92128e-116
NC_020449.1\|WP_044279194.1\|740480_741461_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	8.65602e-128
NC_020449.1\|WP_044278868.1\|741697_743560_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	2.93678e-45
NC_020449.1\|WP_015424386.1\|752773_753148_+\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	1.39838e-39
NC_020449.1\|WP_015424375.1\|731695_733117_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	3.7187e-156
NC_020449.1\|WP_015424387.1\|753217_753988_+\|glucose-1-phosphate-cytidylyltransferase	gnl\|CDD\|133015	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.	1.0324e-147
NC_020449.1\|WP_015424382.1\|747593_748709_-\|glycosyltransferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	1.36699e-63
NC_020449.1\|WP_015424373.1\|730652_731300_+\|site-2-protease-family-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	2.48824e-52
NC_020449.1\|WP_015424390.1\|755596_756913_+\|lipopolysaccharide-biosynthesis-protein-RfbH	gnl\|CDD\|237960	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional.	0
NC_020449.1\|WP_015424383.1\|749311_750976_-\|hypothetical-protein	gnl\|CDD\|200557	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	2.9958e-12
NC_020449.1\|WP_044279195.1\|753992_755054_+\|CDP-glucose-4,6-dehydratase	gnl\|CDD\|274236	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.4636e-175
NC_020449.1\|WP_015424372.1\|729453_730656_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	3.28305e-170
NC_020449.1\|WP_015424391.1\|756927_757647_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|99778	cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.60088e-51
NC_020449.1\|WP_044278875.1\|755043_755607_+\|dTDP-4-dehydrorhamnose-3,5-epimerase-family-protein	gnl\|CDD\|380337	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production. RmlC (deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-D-hexulose 3, 5-epimerase or dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; also known as RfbC) is a carbohydrate epimerase involved in the production of dTDP-L-rhamnose, a precursor of the bacterial cell wall constituent, L-rhamnose. L-Rhamnose (6-deoxy-l-mannose) plays an important role in the cell-wall structure of many bacterial species. It has been found to contribute to the virulence of several species, including the Gram-negative Salmonella enterica and Vibrio cholerae, where it is present as a part of the O-antigen, and is essential for the growth of Gram-positive bacteria such as Streptococcus pyogenes. RmlC converts dTDP-6-deoxy-D-xylo-4-hexulose to dTDP-6-deoxy-L-xylo-hexulose by catalyzing the epimerization of the 5-methyl and 3-hydroxyl groups of hexulose, the third of four steps in the dTDP-L-rhamnose biosynthetic pathway. RmlC belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.75132e-78
NC_020449.1\|WP_015424380.1\|744063_746538_-\|signal-peptide	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	7.56901e-06

>NC_020449.1|WP_015424382.1|747593_748709_-|glycosyltransferase
MKKVLHIQLLPILSGVQRFSLHLLDGLDRNEFEIWIACKPGGEFVDEIKVRGYRYLPLPTFRHQICVWDIFTFFHLLYLIKKHHFDIVHTNASKPGLLGRLAARLGKVPLIIHTTHTFPFLEHQKPVTYKFFTTLEKIGNRLGDYNVFVNNSDRLKSLKMGLIKPEKAITIYNALPPTLASALQEIAQNRKKPEKEIIIGSTLRFCLQKNVINLITASCNACLQEPKLKFIYLGEGEYFDLCKAIVHSYGLEERIILPGWDKDVLPWLKVFNVFILYSRWEAMPFSIIETMHSGLAVIVSDLPSLSELVDSETGYIVPLDDSANLIQTFREIASDFEMPYQKGKKAAKKIAAICSYERMVNAYRELYLSAK
>NC_020449.1|WP_015424381.1|746534_747581_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MINIYLLIIIEAVLIHLCTHLLFPLNWKISKKLKLIAYPSERKIHKIPIPEAGGLCFALPIILAQATFGLFSGNTEMGKMLLELSGVGFLALCFGVWDDRFESPPPYKLVWQICLGVIMYLFGYRVLYLTNPFGEHFILGWLSFPVTVLWYLIVINAINFIDGLDGLACGITIIVSAVLIVIGIKEQNELVITISSFLLAGNLAFLRYNFYPAKIFMGETGALFIGLNIAAISTAGTSQYKGITSITLMVPLAVMAVPLIDFVLAVFRRLHYRDMFHSDKEHIHHTMLDIGFSQRAIAIIIYLVTLLFGLIAIGFSFSSKKIVFSLLLGLFALMVVIAYLIMRQERKK
>NC_020449.1|WP_015424380.1|744063_746538_-|signal-peptide
MKRFFLLVTLLISVFLPAQNWKTFTNTNHIYDLCMKDNNLYVATWGGVLKISPIDNSNNLSVYTEKEIYHKGNRLVSNDIRTLSYIDFSESLWMGSSDNGISILSQLGFQDLGSALGLPSLKVTRIIEHESTILVATSSGLAVFYYLPGVAFPLMLHQYTVANTSGGLVGDNIVDMLLTETGTLFVATTNGVSYIPLEQLDNDSAWKTISGPGSPLLSGGNPKLSANSENIAIGLYKEVYVHPLDMDSGPWTTYNVSNMLTGKNVSSVLLDSQSRLWISYADWDEAILSYTNTSDSLLTLIENNTYTHILKETNGLGYSPISRIVELNGEIYLCSWGEGIYHKEENYWSNYDPTGIGFPRIAQVITDNDYNLWFASGYISNLPVRKGSMGVSKLADGNWSTLNIHNSPIHTDNILGIAIDPLNRKWFATWDNTNSPEGWEKGLSVFDEDNNIWVHITKDGIRYYNNETQSWGAYNPNPSYRLTTSTIGGIYPAGDSLMMVMCYDGAVNVLDMNFQIVARFSPPNTVFNHLLYGYYNGEKYFIGTNDDRGLTIWNHNSLPVTGGEHWLIPPPADLSSCVVYGVVTIDTPYEGKQHWIAASTGVFMWNEVNWYRYDTMIKRYKYNIISNLWENDLLYYVNEERLFGSVRTTPTCIFLDAQNRIWLGSMENGLSLYDPYTERFTNYFYPNYPLISNYITCLGFDPVAGDLIIGTPDGYNTLKIGRTVKIPTTLQNLKAFPNPFRPSVQPYLQIVNMPVDNMPAGKAECRIYDSSGALVIKLEENALCRFQWDGKNAAGKQCSSGIYFFVVADDAGNIKKGKLAIIND
>NC_020449.1|WP_044278868.1|741697_743560_+|RNB-domain-containing-ribonuclease
MNIPLNVYVAYFEKGILNFGYVIAQNNNRLEVINETGNYVVLPESRIILQSKERYLEIEPYQALPNFINQVNLFEEQFQESDFHFLKEKECTLQEIATELNLQTDVQIFALFKYLHNHPKEIHRKKNKYRLKTPEEITQYQLQLQQEEEERQFLQDVNAFFSGAELSRESQHKLYNALPELQTAKKHKKLKELILSKYPLLKPEEAILEFRKFCGETPEYIDPVIANAGIPIGFSSLLIEEKLLPWKATKPQAIAFSIDDESTKDFDDAISITKDGSFWHLTLYVSSVSERLNLEGALFAEAKKRVSSLYTANAVIPLFPFNHSEQELSLKKDSVRPVLALNLWLDENLAIQHYELSRMNITISENYSFNEIDQQIEQEPFSTLYRLSKLLAEKRGANSFSEKEHYYYYISASEQGLEVKCVDTQSPARKIVEELMILYNSYLADYAVKKNIPVIYRNINQFEDPKDNFLSLQAYLSTEPEFHPGIGANAYLHSTSPIRRYVDLINQLQISAILQGKNPPFSKEELEKDIPLLEKRIYDIREIAHKSERYWVLKFLQQNCQNIPLETYFRTSIDDYLNFELIPWGFIITAKSESYPKTERCKIVIYKVDPEQGIVWVDII
>NC_020449.1|WP_044279194.1|740480_741461_-|aspartate-semialdehyde-dehydrogenase
MKVAIVGATGEVGRMMITCLEESNLEISELDLFASSRSAGTVLYYTDQPIKVQELKQDSLLKHYDYVLFSAGAGVAKTFAPIAIQTSEVVIDNSSGFRKEPNIPLVVPEVNGDLLTGYSGIVANPNCSTIQIILPLAVLDKLFNLKKLIVSTYQSVSGSGHQGIVTLLNQRQGKNDKGVYPHIIDLNVIPQIGGFLDSGYCQEEEKMHFECRKILNKWDLLVSATTVRVPVIYGHSVSVYAEFENEVDIPKSEKTLQNSPRIVYYPNTYITPLDLGSSNETHICRLRLGTDEKSLTFWNVGHNVRLGAAANAVNILITHSKYSGRL
>NC_020449.1|WP_015424377.1|739359_740481_-|amidohydrolase
MIDIIELRHSLHRIPELAFQEFKTKAMLEENILRLLQNQPENLWHLHYFQNSPGLLLEYSPAKGNYLLFRADMDGLPITEKTGVPFASEHPNLMHSCGHDVHLSILMGLIQYVTNTLPQRNLLFLFQPAEEGEGGAKSILAEGIIQKFEIASVFALHIASELPVGSVSAKEGIFFSISQEFDVLFYGKTSHIAFPEKGIDALSAGIKFMNTIEDKLAELKKTEKIIFHIGKMSAGTIRNVIADKCALEGTHRSLSPKISQKINILLKDTAELIARDTNTRSEVKFLASYDPVINNPELVKRLQEICRQKNIEYIPAQTSMTGEDFGFFTTLYPGLLFWLGSGCSYPLHSDKFLPRDECLEIGVKIMSAFLTTE
>NC_020449.1|WP_015424376.1|733182_738636_+|T9SS-type-A-sorting-domain-containing-protein
MKRSIALILILLAGCIVFANINDNLPANLNSAFTLGAKNSSSLQVNFTLPEYSVQEETYGGAVYHKIMLPLSGTLMETGMPELPVVCTSIAIPHTGGVNIEVLSTQQTVIPNFLPYPVQQGNSSESPKGFIINNEYYNSGNNYPEMLIEYSEPSILRDFRIITIQINPFFYNPQTGELTVKHNIDFCLNFTQEQGINELPNEPANISASFDKIYDSMILNYGDYRDAVVTNTPPSYLIIYGNNSDINFTSALNEYVLWKKQKGADVMVASTAANEAGNTTTSIKNYIQTKYNNPETRPDFVVLIGDTSGSYTIPANSAANSGVTDYNYTFLAGNDQLGDCFIGRISVENLSQFLVVLNKIYLYERDINLATANWLNRMMLSGDNAPSGISTMYIHKYIKEMSLLTNPDYTFTEDYGASPNYTIINQALNQGVGFYSFRGYIDWVPPSESELFNAYKLFHTVNITCGTNNYNGAGEVETFVRYGTTAAPKGAVTGIGMCTSSTHTTFNNAIHGGIFAGIFASDMRTMGEALLNGRLYLRQLFGVSSPTNATNFAAWCNLMGDPTMEVFTGIPNHFDVTSDVSIPLGLRLYDVIVKDNMGNPVEGAAVVLNMGGLILARNYTGADGTAILVLPSNMLAGNATLTVSKHNFKPYQTTISVFNMATLVPGTMVIDDDNIAPSQGNGNAIAGSGETIELFLGLTNTGTDIITGISGSVSSNSPYITITNSSVIYPDILGGETGINSVPIIIQIAPDTPHQTMLRLYLNLTDSNSVSYHISEFIPVEAPNIDFVSYLVIDSNNQHLDPGEVAEFIITVKNTGTVEADDVLGILYTQNDLVGVSDPNAEFGSLPTGILVTCGTNRFTLSARPEVLPGMLIPMRLKLYNSDGFEQFVDFTFTVGVVTQHDPLGPDTYGYVIYDWTDTNYAEVAVYDWIEISPLEGGLGTALAISDGYASGNEGDQVGSDALEVVSLPFPFQFYGILYNQITVCSNGFIAMGVTANAEFRNYRLPGPMGPNPMIAPFWDDLATGAGSGIYTWFDRNHHSFIIEWYKLKNGNGGTALETFQCILYDQAAYPTSFGDGPIKFQYQTFNNIDSQSGNKHGNYCTIGIEDHTGKVGLEYTFNNIYPTAAAPLSNGKALFITNVPIYHSMAHLLLEATYVTDTNMNGICEPGEIVELGAKIQNTGNLTAENVIGQISTTSEYVTINNATAEYYPIEPGMNGVNKEPFTFTIANNCPDEEVLYFDLLITSGELQWTRNFSLQVSASCLLYHSFFVDDHLNDFDGMVGSGEFFNLIVNLENFSAVDATGIQATLSSSLQQLIIEEPLLYFDKIGPNDIYQIKFPINTSMLDVSVTQIPLLFTATASNGSSTNASFSIPYNNPVVFQDFELNNGYFVSETGWVWGNPSQVTPFSGAKVWATNLSGNYPSYVNYNLYTPKYLLEASSQLQFRHYYSCEYGYDGGNVSISTNNGVVWNLIYPVSGYNGYSLNGLNGDPGWTGNSDGWQLAIFDLSQYAGQSVMFRFRFGSDGEISGPGWFIDDFTVSGVNLKTGYLYGVVYPSSGLDPSMATLRSNQRFTSHPDSEGNFIIFLPNGIHTVTATMPYHQSSTLSSIIINPSNPVHYTEFTLIDLPQPQSISYIGDNDTGDLYVFWQPPEDTVLPIVGFKVYRKFNTDQFYLVQDSPEISYHEVLTLPGHYKYYIVVKYLNTDGTPSQILNIPFPFVPNSDYEIPALVTKLNNNYPNPFNPTTTISFTLAKPGKTTLTIYNLKGQQIKRLVNEELPSGMHNVVWNGKDEKGRNVASGVYFYRLQSGNYQATQKMLLMK
>NC_020449.1|WP_015424375.1|731695_733117_+|type-I-glutamate--ammonia-ligase
MELKELQHLILANEVKAVDLKYCGLDGKWYHITFPARNIAEVMEIGIPFDGSSIPGMRSVESGDMVLMPDSKTAHLESFYETPTLRMICSICDAETRLGVKKDPRSVALRAHNYLLSTGIADMSTWIPELEFHLFDSVQYCSDSFSAGYNITSSECKEALPDENEDPGSLSLQGVKGYHIDTPFDQFYEIRQKIVELIEEQDIKVRYHHHEVGISAQEEIETELLAFPKICDDVMIMKDIIRKTALQYGLTATFMPKPVFGHAGNGMHFHIMLHKNGKNLFYKKGGYADLSEEAIWFIGGILIHGRALVAFTNPSTNSFKRLLPGFEAPVKLFYGLANRSAAIRIPKYANTPETKRFEFRTGDGTCNPYLAMSAILLAGLDGIKKQIDPAKYNLGPFDDNVFAWSEDKKAQLLSIPTDLKEAMQALKEDHQFLLEGDVFNEELIESHIELKLKENEAVSARPHPHEMLLYYNL
>NC_020449.1|WP_015424373.1|730652_731300_+|site-2-protease-family-protein
MISPKVIKLLVNAVIIFLVFYSIIIHEFSHSLMAYWLGDDSAKRAGRLTLNPLKHIDWFGTVILPLFLYLTCGFIYGYAKPVPFNPYNFKNLKRDSGLTGLAGPLSNFLVAIFFALIFHLCGFSFVIQYICFFVIYLNLLLAFFNLIPVPPLDGSKVIGMFLTDQAYYKWTMQERKGMMYLFAFIIITTLLGWNIIGKIIIPPVNFVMQIMGVRI
>NC_020449.1|WP_015424372.1|729453_730656_+|tyrosine--tRNA-ligase
MAFEQELKLISRGVEEIITLEELKAKFAKAEKTGKPLRIKYGIDPTGYDVHLGHLVPIRKMRQFQDLGHIGVIIIGDFTAQIGDPTGRDESRPPLSAEQVKRNSEKFMEQLYTVLKKEQTEVRYQSEWFGKMGMSDVIKLLGKFTLAQFMAHQTFRQRYEQGLALGMHEILYPVLQGYDSVAVNSDVELGATEQKFNILCGRDMQSHFGMEEQVAILSPILIGTDGVNKMGKSLNNYIAVFDPPTEKYGKVMSIPDNIILNYFYYATTLPEEEIEKIKKELESGTNPMLIKKRLAREIVTLYHSAEEAKEAEYAFEKQFSLREVPNDIPEFVVSKNSCKLSNLLVDSGICSTNGEAKRLIQGGAVSLNGEKITAFDAVVNLKDGDIIRAGKRNYIKIKKI
>NC_020449.1|WP_157859994.1|748886_749057_-|hypothetical-protein
MKRILEIEKGFTQISLITQIKYENRYGMNRMIWAEGRELRAERKKGVHADFADGAD
>NC_020449.1|WP_015424383.1|749311_750976_-|hypothetical-protein
MISIVIDSKVTRWTREIKYVFGFIFQTLGYNFRFLEELEDLKANDILLVYGYTEPTPEELKSLAKHYITFFIPCDPDFFDAKAYSADRLRRCMREIKLLNITPVVSNRKFEYPAENYTESDISGGKINFDLVGNLFLHLSNLEESSDAGSMEKGFYPDSASAFYNYRETPIVDNLLWLMDSLIKEHCRAKNNCIVQKLYWPLAQQAAVLLSHSIDDLQKWDASSLILSIPDDLAMFFTFRWKQLAHTLTGKIQYLFTNYELNWNFDEFLKYEKDSNCRSTYFLATEANEEIDYSLEDPDLQEEIQKILHNGNDIGLLATADKLTQDDYLTRKQILLHLLGKEKLGIRQLNYKSNNTIRELQNKISPVFSQSTAFQSLPGYKNGMSLPWQPWVNGTKMDYWELPTIYRDEYLKINKHNYLQLEDAKHQLKKFFQNALRTHSIFSTDFTIASFSNISYMNKLYPYLLALIKSSNTYLTTAGELVDWWEKRNRVTINESEDQIGLMFPDDLDNFTLFLLGNPKIKEVAEMPAKVKGNQIQFSNIKADSIAVIVLEGK
>NC_020449.1|WP_044278873.1|751233_751593_+|hypothetical-protein
MSYRYFSTTLTPYLFTCYLLSRFIYLASIYFYLQKMIDNPNPIFNSALNYENYKREYYKTMAFIPIKYWTVKNFNPKPIDFSVTLLTGDLEVNFYICTVFCPPASVFCHSALPAESIPY
>NC_020449.1|WP_015424385.1|752234_752681_+|hypothetical-protein
MKATVKLALPGYTGNMDDVVIYYNSKLNKLIARKKGKSDFVPDNTITKEIYAFARRINLSADYKKDCDKYINAYNSKNRRNGKAMSSWPSVWMKVMRAQKKLLPELDLNTLTREQAIEANLGCISIAKAVEAGFLENVPGHQKLTNLI
>NC_020449.1|WP_015424386.1|752773_753148_+|four-helix-bundle-protein
MKIDSFTDIEAWKQARLFVVNVYNIFSQGNSQKDFGFRDQIQRASVSIMSNIAEGFDSGSKKSFIQFLTYSYRSASEVESLLFVALDINYLDANQHNELMSQLNSIKKLIGGFIRYLKNTQHPN
>NC_020449.1|WP_015424387.1|753217_753988_+|glucose-1-phosphate-cytidylyltransferase
MKVIILAGGMGTRLGSLGELMPKPMIEIGGKPIIWHIMKIFSHYGYNDFIVCLGYKGNVIKDYFYHYYTYNSDFTINLASDEIIFHNSNDDNFNVTLVDTGLKNLKGSRLKQVERYLEDNLNFITYGDGVADINISSLVEFHKSHNKLLTITGVKPPSMFGEMIEKDGLVLSFEEKPQTSKGLINGGFMVFHRDLMNYLSEDPQCDFEFGPLEDLAKKEEIMTYKHKGFWECADTVRDLEHLNKLWNENKAFWKIW
>NC_020449.1|WP_044279195.1|753992_755054_+|CDP-glucose-4,6-dehydratase
MFLLDKYNDKRVLITGHTGFKGSWLSLMLFELGAKVTGYALDPVNCEDHFNLIKLSEKIEDIRGDILDFNKLSKVFEDFKPEIVFHLAAQTIVLESYQNPKDTFDINVQGTVNILECCRNSNSVKACIIVTSDKCYENKEWLWGYREIDRLGGKDPYSASKACAEFVTYSYLTSFRQLNLASVRAGNVIGGGDWANNRIVPDCMRALIANEPIIIRNPLSIRPWQHVLDALYAYLLLAIKLSEDKNTYQGVWNVGPNLDSMKTVEKLVEKVIFYWGKGKMKIEQKTNANPEAKYLFLDTTKIKEILHWKPSWNFDESVFYTVEWYKNYQAGENMAEISRDQIRKFLKGNGYEN
>NC_020449.1|WP_044278875.1|755043_755607_+|dTDP-4-dehydrorhamnose-3,5-epimerase-family-protein
MKIEETSLEGVLIIHLDPKIDKRGYFLRFWDETILSAYNLPQRWCEESISYSKYKNTLRGLHFQYQPFAQSKFISLIKGYISDVVVNIDLDSPNYGKWQLFELSDKEPLALFIPANYAHGFVTRTEDCYLIYKMDKPYNPLFEDGIIWNDKDLGINWKVSAPILSQRDSGFKTLNEITTKLRMLNDK
>NC_020449.1|WP_015424390.1|755596_756913_+|lipopolysaccharide-biosynthesis-protein-RfbH
MINNSETLKEQILDLCKQYYELKHKPDDFNINKDKVYYAGRVFDYSEIQNLVSASLDFWLTAGQYTEEFEFNLAEFLGLSNAITVNSGSSANLVAITALTSSKLKDRRLKTGDEVITVAAGFPSTVAPIVQNRLIPVFVDIELGTYNVNAELVEKAISPETKAIFLAHTLGNPFNLDIIMHLAKKYNLWLIEDNCDALGSRYKEKLTGTFGDLATCSFYPAHHITTGEGGAVVCEDEELAKICKSVRDWGRDCYCVGGESNTCGKRFSQQYGTLPYGYDHKYVYSEIGYNLKMTDLQSAIGCAQIKKLNGFIYKRRNNFSYLLSRLKQFEDFLILPQATEFSDPAWFAFPITIKNNKGITRNQITTYLEENRVETRNLFSGNLLRHPGFLNIEHRVSGMLTNSDIITNDTFFIGCYPGLDEIRLNYICDVFSSFFNSL
>NC_020449.1|WP_015424391.1|756927_757647_+|FAD-dependent-oxidoreductase
MSVVVKSPCVVTYLKRITETLTVIELQPLKRLPKYKPGQFLHLTLDYYDPAKNWPESRVFSIANYDPEVKTLRIIYSVKGKYTKLMNDNLQENQQVWVKMPYGDFTFNSITDNMIFIAGGTGITPFLSYLESIKYKIPDKNIWLFYGAKEKNCMVGEELIDNIVLVNPRFKVKKYLEYKSGNERYEMGKLEADKILEELQSIGEADFYISGPPEMIQYFKQSIIDAGIKQEFIHIDAWE

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Crispr_ID: NC_020449_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_12

802543-802646

Orphan

Consensus_repeat	Method
TAACAACGGGTTTTAACCCGGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_12

>merge|NC_020449|12|802543-802646|CRISPRCasFinder
TAACAACGGGTTTTAACCCGGTGAAAAGATAAAAAACATATCAACTTTGGGAGCAAAGTCCCATCGGGACGACAGATATTAACAACGGGTTTCAACCCGGTGAA

>NC_020449|12|10|802543-802646|CRISPRCasFinder
TAACAACGGGTTTTAACCCGGTGAA	AAGATAAAAAACATATCAACTTTGGGAGCAAAGTCCCATCGGGACGACAGATAT
TAACAACGGGTTTCAACCCGGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424431.1\|795120_795954_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200566
NC_020449.1\|WP_015424443.1\|808213_808417_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NC_020449.1\|WP_015424445.1\|807741_808137_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|372581
NC_020449.1\|WP_015424430.1\|794228_794993_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200557
NC_020449.1\|WP_015424436.1\|799678_800074_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|372581
NC_020449.1\|WP_015424443.1\|807164_807368_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NC_020449.1\|WP_015424438.1\|800581_802180_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775
NC_020449.1\|WP_157859997.1\|803269_804874_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_020449.1\|WP_015424437.1\|800150_800546_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|372581
NC_020449.1\|WP_015424429.1\|793828_794197_+\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NC_020449.1\|WP_015424434.1\|797597_798284_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NC_020449.1\|WP_015424450.1\|812871_813255_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|319894
NC_020449.1\|WP_044278887.1\|805354_807115_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214495
NC_020449.1\|WP_015424451.1\|813265_815398_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376523
NC_020449.1\|WP_015424448.1\|810183_811233_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424447.1\|808747_809914_-\|DUF4147-domain-containing-protein	unknown	unknown	gnl\|CDD\|225254
NC_020449.1\|WP_173307545.1\|796124_796583_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NC_020449.1\|WP_015424433.1\|796598_797591_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_020449.1\|WP_015424435.1\|798689_799619_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187566
NC_020449.1\|WP_015424449.1\|811545_812811_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424431.1\|795120_795954_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200566	cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA). This family contains many uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA). PuuE allantoinase appears to be metal-independent and specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. Different from PuuE allantoinase, HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. Both PuuE allantoinase and HpPgdA function as homotetramers. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, PuuE allantoinase and HpPgdA do not exhibit a solvent-accessible polysaccharide binding groove and might only bind a small molecule at the active site.	1.0877e-52
NC_020449.1\|WP_015424443.1\|808213_808417_+\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	2.06152e-22
NC_020449.1\|WP_015424445.1\|807741_808137_+\|GxxExxY-protein	gnl\|CDD\|372581	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	4.8393e-56
NC_020449.1\|WP_015424430.1\|794228_794993_+\|hypothetical-protein	gnl\|CDD\|200557	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	2.55458e-05
NC_020449.1\|WP_015424436.1\|799678_800074_+\|GxxExxY-protein	gnl\|CDD\|372581	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.70771e-55
NC_020449.1\|WP_015424443.1\|807164_807368_+\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	2.06152e-22
NC_020449.1\|WP_015424438.1\|800581_802180_+\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	9.47862e-26
NC_020449.1\|WP_157859997.1\|803269_804874_+\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.36949e-43
NC_020449.1\|WP_015424437.1\|800150_800546_+\|GxxExxY-protein	gnl\|CDD\|372581	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.4744e-56
NC_020449.1\|WP_015424429.1\|793828_794197_+\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	1.11526e-54
NC_020449.1\|WP_015424434.1\|797597_798284_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.99789e-46
NC_020449.1\|WP_015424450.1\|812871_813255_+\|4Fe-4S-binding-protein	gnl\|CDD\|319894	cd16372, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	8.61356e-56
NC_020449.1\|WP_044278887.1\|805354_807115_+\|hypothetical-protein	gnl\|CDD\|214495	smart00060, FN3, Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.	0.00511448
NC_020449.1\|WP_015424451.1\|813265_815398_+\|hypothetical-protein	gnl\|CDD\|376523	pfam01314, AFOR_C, Aldehyde ferredoxin oxidoreductase, domains 2 & 3. Aldehyde ferredoxin oxidoreductase (AOR) catalyzes the reversible oxidation of aldehydes to their corresponding carboxylic acids with their accompanying reduction of the redox protein ferredoxin. This family is composed of two structural domains that bind the tungsten cofactor via DXXGL(C/D) motifs. In addition to maintaining specific binding interactions with the cofactor, another role for domains 2 and 3 may be to regulate substrate access to AOR.	8.10975e-122
NC_020449.1\|WP_015424447.1\|808747_809914_-\|DUF4147-domain-containing-protein	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	9.52519e-72
NC_020449.1\|WP_173307545.1\|796124_796583_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.9104e-32
NC_020449.1\|WP_015424433.1\|796598_797591_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.36708e-149
NC_020449.1\|WP_015424435.1\|798689_799619_+\|SDR-family-oxidoreductase	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.83369e-158

>NC_020449.1|WP_015424438.1|800581_802180_+|sugar-transferase
MKNKIAKYALFALDLLIIVFAFLFAAKIRPGTKRIILTYYRSFVPFAVIWLGSGLWGQKYSVKTIGGGADYVKRIFKCDLIAVAFIFGLMYLLGKFYYSRYIVFGTISLSFVLELFFYPAVYYTFRFHKENESYASTNLVTHSKAMENMQSPKFFLDSANAVPIISNEPYHLPFSENIDSDSILIPLWQQYLAEQPQLFEFINDYLDLGRFSKNGTLILNSENYFNIQNEPVNSRQIFINLHKINDLRRLNYYFIRVNELLIEGGVFICKGQTISERHNLFYKRWTPYLGSILYGIDFIFRRVFPKLPILQGWYFAITKGKNRAISETEMLGRFYFCGFELIHKREIDDMMYFILKKTKKPCTDPNPTYGPLIRLKRKGKDGKTIYLKKLRTMHPYSEYLQDYVYQTNALQEGGKFSNDFRVTSWGKVLRKLWLDELPQLINFLQGDLSLVGVRALSDHYFYLYPPEMQELRIKLKPGLIPPFYADMPKSFEEIVESERRYIMKKMEKPFKTDWVYFWKSVWNIVVKGARSN
>NC_020449.1|WP_015424437.1|800150_800546_+|GxxExxY-protein
MNLNEISYQIRGAVFDVYNELGPGLLEKVYEQALIIELQNKKLQVQKQVPIEVLYRGFDLGLQYRLDLLVNEQVVIELKSVETLLPVHHKQLITYLKLAKKPLGFLINFNTDSIKDNIIRITNDKNHPDLK
>NC_020449.1|WP_015424436.1|799678_800074_+|GxxExxY-protein
MNLNEISYQIRGAVFDVYNELGPGLMENVYEKALIIELQNKKLQVQKQVPIEVLYRGFDLGLQYRLDLLVNEQVVIELKSVETLLPVHHKQLITYLKLAKKPLGFLINFNTDSIKDNIIRIANDKNHPDLK
>NC_020449.1|WP_015424435.1|798689_799619_+|SDR-family-oxidoreductase
MKYLVTGGAGFIGSNIVKELLKQNQEVRVLDNFATGKRENILPLLKDPKLTLIEGDLRSFHIVRSAVKGVDYILHQGALPSVPRSINDPITTNDVNILGMLNILEAAKEFEVKRVICASSSSIYGNSEFLPKVETMPVNPMSPYALTKYTQERYCQIFYQLYGLETVSLRYFNVFGPNQDPTSQYSAVIPKFIKLMMPDKRPIIYGDGSQSRDFTYVENNVWANIQACTAEKAAGEVINIACGESYTLLDLVKLLNEILGKDIEPIFEKERAGDVKHSLAGIDKAKELIGYEVRVDFKEGLQRTVEFYR
>NC_020449.1|WP_015424434.1|797597_798284_+|SDR-family-oxidoreductase
MKILIAGASGGIGKYLAEQFSEKGFEVFGTYNSHPPKQNLKYKMDKVDVTKEPEIEEWINNVANCSDELSFIYCVGLNYNCITHKAETDKWLEVINTNLIGAQLSLKHILPLMRNKRYGRIILFSSVVPQIGVSGTSAYSSSKAGLWGLTKTVAIENATYGITINTVNLGYFDIGMIKDVPTDLLNKIINSIPIGKLGDPVNILKTVEYLIATDYITGSQINLNGGLY
>NC_020449.1|WP_015424433.1|796598_797591_+|ketoacyl-ACP-synthase-III
MKQLVRNVHIIGTGSYTPETVYTNEYLETIVPTSAKWIEENLGIKERRIALPNQTTSDLAVEAGKKAIENAGLKPDDIELIIVATATPDRLAPSTAAIVQDKLKAYNSVAFDLAAVCSGFLFGISTASQFIATSVYNNALIIGADTFSKIIDWSRRDCVFFGDGAGAAVLSHTETDGGFLAFRLYTDGRGKWNFTIPGGGSEFPLSYENVDAGYRYFQMNGKAVYETGVKVLPKAIWQVLKDTGLSINDIDYMIPHQPSIKILKDTAEVIGLPFEKVMTNMDRYANTSGGTIPILLDEVNRAGKLKPGTLVLFAAVGSGWTYGASIIRWS
>NC_020449.1|WP_173307545.1|796124_796583_+|acyltransferase
MPFNGIRVKLQKMRGVMIARDVHIGPLVTIDDVYPYFVSIGRGSSIAGNNFILTHSKPLEYHSEVSKAYVAPVNIGKHVWIAINVTILPGVTIGEGSIVASGSVVTKSIPPLVLAAGIPAQVKKDLAPKLKKNYTDENFNAILEKRKKEFGF
>NC_020449.1|WP_015424431.1|795120_795954_+|polysaccharide-deacetylase-family-protein
MPKLLDLYAKYGIKATFFYTGYIAKLYPEVVKMAANLGHEIGSHGKSHLKENGFDIMPYEKQVKHLEYSKKLLEDISGKPIISFRAPALRVSPNTATALLETGFRIDSSIASQRFDFFLSFGSKKKIKFLNAPRLPYRTNRNNIFIRGQSNLVEIPPSATIIPFAGTTMRIMPEITSYHQKILHLEAKLNRKPLVFIIHPNEIIDESNEPRIIKRRSDNVIAYVLSDLLRAKLKTKNLGENALPLYEQLVLYYINKGYAFTTMQEYVSLNEGKISNL
>NC_020449.1|WP_015424430.1|794228_794993_+|hypothetical-protein
MKRDFTVRKYGELLDAFTEAGYNFQRVEDFIQKPNAQVVVLRHDVDLRNWAAIRLAKLEASLGIKSTYYFRIGPQSYNPKIIKQIVDLGHEIGYHYEDLATCNGDIEEAIHSFEKNLSKIRYFYPVKTVCMHGSSGSPYDNRDLWNYYKLEDFSLICEPYISLDYNKVLYLSDTGRRWNGFKMSLRDNVKSSYNYNFYKTKDIIKNIETLPKQILINAHPEQWTNNLPEWLFVKIFSIAHTFYKIHYRNPKIKG
>NC_020449.1|WP_015424429.1|793828_794197_+|GxxExxY-protein
MIYEKELSDRIIGCAIAVHKELGAGYLEKVYERALCVEFKYQDINFESQVPIQVFYRNQIVGDYVADIIVDSKIILELKACNVIHPLHSAQIMNYLTATGIKVGYILNFGNEAKLEFKRIVH
>NC_020449.1|WP_157859997.1|803269_804874_+|IS1182-family-transposase
MSYREYNQEQTDIFGLDINARIPEHHLVRFVNDLIENMDLTKLHAQYSPEGSPAYNPKMMLKIIVYAYMNGIYTCRKIAKAVRENINFIWLTGDQQPDFRTINTFAWTRCKDVLAEVFCKVVLMAEEKGYLELDSCFIDGTTLRANAGKNSYIWKKSALRYQEQVKTRVDNLFCRIKKLNEEEQLQYGDQDLREVGTQLEFLNELNVEEAEPEEIAQAVEKAQSELQKAVDTLKTHLPSNAPAIKNINHLLSELNKIQKLDVPKLEKYDQQIEIIGKDRNSASKTDNDATFIRMKDSLLAPGYVSSISTSNQFVTAVHLYNVPREAVEYTTLMDIHYTSLGTYPKQVIGDAAYGISVNLDYTHKKKIVSYLKPPDYKRDYWDSLLPGFVYEETKDQWVCPNGKTLTLDNEEVVRANGPERTVKSYRCEDCQDCPFVQKCIPYKNKSGKNLVYDPYLSPLRQETVHNLQSKEGKKLMKKRCIEPEAVFASIKWNSKFSRFTVRSLSKCKNQLLLVLLGHNIQKFYNASMATMTGT
>NC_020449.1|WP_044278887.1|805354_807115_+|hypothetical-protein
MKKAVVSVFGFVLIAGILFAQPWIYDFGTDIKSYSNPEHGSFNFLPQPLSGEDFIRVGSSGSINLENPGIADFGSGSELRIVASNTGNSTKASIYNYEGTNLFYIRFNLLLGDFEGGNTANSGTFYFVMGNNGNSNFSSDSGYNRDYSFTILSFTFGESGSIITQYHWGLSSIGTLSGNPISQGTNYLIEIWGNNTEFNKSYYKNGTSNTLNQNYMHLWINGVKYSLKKANIADNKVINSFMFYGAGSNNNVANCFVDNIVYSKALYSSPSNQASFFSNQNCSSNSIELTWTPGNGNKRIVILSTNSNIIAPEDGTDPEANSVFGSKGQQVVYNGTGNSVTVSGLSSSTTYYAKVFEVNGSGFATMYNTTGNTIQITTAEDTLPVELSNFRAELDYRNRIQLMWVTQSETNLLGYYIYRNDVDDVTNAELVSPLIEATNNTSLQLYIYTDETINEAGNYHYWLQCIDYNGKEKLFGPSICKYELPVTVSGAEIPLREGITSIFPNPFNPCTTISYDMDNAGLMELAIYNIKGQKVWGKILEHSGKGNYKYLWNGCDEKGKECSSGIYTVIMRCGERNYIRKMTILQ
>NC_020449.1|WP_015424443.1|807164_807368_+|GxxExxY-protein
MNLNEISYQIRGAVFDVYNELGPGLLEKVYEQALIIELQNKELQVQNQVPIEVLYKGFDLGLILYLS
>NC_020449.1|WP_015424445.1|807741_808137_+|GxxExxY-protein
MNLNEISYQIRGAVFDVYNELGPGLLENVYEQALIIELQNKELQVQNQVPIEVLYKGFDLDLQYRLDLLVNEQVVIELKSVETLLPVHHKQLITYLKLAKKPLGFLINFNTDSIKDNIIRIANDKNHPDLK
>NC_020449.1|WP_015424443.1|808213_808417_+|GxxExxY-protein
MNLNEISYQIRGAVFDVYNELGPGLLEKVYEQALIIELQNKELQVQNQVPIEVLYKGFDLGLILYLS
>NC_020449.1|WP_015424447.1|808747_809914_-|DUF4147-domain-containing-protein
MKDLIINAFESALRQLNTLPELKKDLEKRPLSPPVKILAIGKSAFPMAKVCVDILNKREINYSGYLLTKYGNVTGIIPNLIVREASHPIPDINTIKYSREILSWLQELHANEELIILLSGGGSSLFEVPINGFTLEDLIAFNKNLLQSGLNIKEMNYERAKKSKVKAGKALNYIKAMKIYCYALSDVPDNEPEIIASGCFFPANSQKIEDNYYQAKLKKGKQELYYSIIGDNFSLRYQLAKELPPPVYVQPRYFSENVENVAEFIADFAFSTDKKGMYIFGGEAPVKVTGNGIGGRCTHLALLLAKKIAGKKHITFYALASDGNDNLENVSGACVNQNTLNQLQAKGIDIFSVIAECDSYSALKTINAVVPAFQNPLNLNDIYLLQLY
>NC_020449.1|WP_015424448.1|810183_811233_-|hypothetical-protein
MQKYQIVIILITALLFSACCHHKTKEITPETENFNYTGSKFHNNYIWGGAMNLAWNELIESFTSEPIELDTKDESALKTLYCLNNPVFSKADIDAASYYVKSGYGQKTVNLINYECRAKFPDKTIPDLQLKLGDRDIISYAYFLKQIEYAIAFQKQELNFMDQKINGFTSGAESYSNVYILAYENDDKFLLALKLKDNQDQIFLAKGFPMDKPDEVLKMLKTKAPAQEKADFMPGTVMNRKDIFQAPILHLNYEREYKEMLNKKVTNKKLDGYQIALMQEIIKFDMDEKGARVENEAIIGMITSINPDAYKPKNLILDKPYWVIMKRANSNNPYFILGVGDTKLMQASD
>NC_020449.1|WP_015424449.1|811545_812811_+|hypothetical-protein
MRNGIKIIIVCLFCTLTWSMQGETISPFSLKDKTFEARADFGIGTLKNRNFSFWEGNSSFHYPQNIQAEMDYDSYSSFPEWSKNVTFHSAQEFLYLDVPNSGGNIQEFNSFNTIGVKSRLAGVEVFYNLINNRNDTDKKATSYHFNKYGIGAGFPNSESLRLFGWLMHTDLSDIYPEVDFSSYKAQMAKRYSSKSQIAELGMEYEYNEIPDKVSEEELIKVSEYFPDDYLDWTPKKRFSAYVYASSMRNFYLEPFFLNGHAPDCSPLLLANKSASSVLCRFTTEDRKNDYVDNSQIVLDGILALNFGKYFGLDFRYDSEKKEDYKNDIKENTYNITGNMRLNFIGKESYRLIGILEYLYNKTKGENASENLNFGLYGILRLKNHLNLIAYLKLDNEWQRKDDFLEFDHRDNKLGTILSVRL
>NC_020449.1|WP_015424450.1|812871_813255_+|4Fe-4S-binding-protein
MKVLKTFPDKCITCHNCESACSKLYFKEDNAEKSCIVINEEVYPPEMIVCNQCGNCIDICPTLALTINTQGVVMLNKSLCIGCLMCVAACPNNAMRFAKGVYNPFKCIACGSCPKTCPAEAIELVTA
>NC_020449.1|WP_015424451.1|813265_815398_+|hypothetical-protein
MNRKLISEFKYDLAPVIRGYNKRSLYINLSTNEIKQKPVTELMIDKFVGGKGFDLYLMWHSVQDDTKWDSPENEICISFGPLCGNTSYPGSGKSIVTTISPLTGIPVDCNVGGHFGPYAKFSGWDAIELQGIANEEVIIYIDGDKGIVQILSAPDEEINSHILAEELIKEFADGPDKYQFVSVVSSGKAADNVLITCLNFSFWDKRRKVARLKQAGRGGTGSVFRHKKIKALVVKYSGLKVDSNNPEDAETLRMTGLKLHKEIEEGDATQNRMRQVGTAHLMEIMNDYDLLPIRNFKYGQSPEAEGLHSREFKNLFTQGMPDGCWYGCSLSCCKGVDNFEPRTGPYKGQKVCVDGPEYETAAGCGSNIGVFNARDVVEINFYCDTYGVDTISFGTSTAFAMECYENGILNKERTGGLELTWGNADAALELLHQMAKGEGFGVIVGQGVRRMKQIFAEKYGADPNFLQDIGMEAKGLEYSQYMSKESLAQQGGYTLALKGPQHDEAWLIFMDMVNNQIPTFKDKAEALHYFPMFRTWFGLQGLCKLPWNDIEPANNAETDEPAKVPEHVQNYVDIYKAITGKPLDKVSLIEQSERVYNFQKVFCLRMGKGRRIDDVPPYRAVGPVTEEEYLSRQERYDQQLKEKIGVDPEGKSTAEKMDILRKYREDQYQQLIDAVYERKGWTKEGVPKIEHLQKIGMDLPEVVEVVKRFL

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Crispr_ID: NC_020449_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_13

868451-868529

Orphan

Consensus_repeat	Method
ATCTGTGAAATCTGTGAGAGGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_13

>merge|NC_020449|13|868451-868529|CRISPRCasFinder
ATCTGTGAAATCTGTGAGAGGTAAAAAAGGAGTTATCTAAGAAATTATAAATATTATCTGTGAAATCAGTGAAATCTGT

>NC_020449|13|11|868451-868529|CRISPRCasFinder
ATCTGTGAAATCTGTGAGAGGTAA	AAAAGGAGTTATCTAAGAAATTATAAATATT
ATCTGTGAAATCAGTGAAATCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278899.1\|864759_865812_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|224338
NC_020449.1\|WP_015424491.1\|856318_857221_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180267
NC_020449.1\|WP_015424494.1\|858558_859851_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NC_020449.1\|WP_015424507.1\|873521_874460_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223399
NC_020449.1\|WP_015424501.1\|869708_870410_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NC_020449.1\|WP_015424504.1\|871203_872256_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|376853
NC_020449.1\|WP_015424492.1\|857222_858131_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|180267
NC_020449.1\|WP_015424510.1\|876778_877966_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_020449.1\|WP_044278898.1\|861992_864551_-\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319839
NC_020449.1\|WP_015424495.1\|860209_861103_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326
NC_020449.1\|WP_015424500.1\|868545_869703_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_020449.1\|WP_015424508.1\|875079_875880_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_020449.1\|WP_015424506.1\|872630_873512_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|133469
NC_020449.1\|WP_015424499.1\|866366_868325_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_020449.1\|WP_015424505.1\|872256_872634_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NC_020449.1\|WP_015424498.1\|865808_866366_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_020449.1\|WP_015424509.1\|875876_876782_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_020449.1\|WP_015424503.1\|870657_870894_+\|DUF4405-domain-containing-protein	unknown	unknown	gnl\|CDD\|379580
NC_020449.1\|WP_044278895.1\|855757_856306_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278897.1\|858127_858559_+\|ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|376799

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278899.1\|864759_865812_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|224338	COG1420, HrcA, Transcriptional regulator of heat shock gene [Transcription].	1.12952e-55
NC_020449.1\|WP_015424491.1\|856318_857221_+\|hypothetical-protein	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	3.17709e-90
NC_020449.1\|WP_015424494.1\|858558_859851_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NC_020449.1\|WP_015424507.1\|873521_874460_-\|hypothetical-protein	gnl\|CDD\|223399	COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].	5.08564e-08
NC_020449.1\|WP_015424501.1\|869708_870410_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	8.93964e-55
NC_020449.1\|WP_015424504.1\|871203_872256_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|376853	pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyzes the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <=> ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N-terminus.	8.67195e-87
NC_020449.1\|WP_015424492.1\|857222_858131_+\|phosphate-acetyltransferase	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	1.20848e-93
NC_020449.1\|WP_015424510.1\|876778_877966_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.31379e-164
NC_020449.1\|WP_044278898.1\|861992_864551_-\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319839	cd07538, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporters. This subfamily contains P-type ATPase transporters of unknown function. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd2+, and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NC_020449.1\|WP_015424495.1\|860209_861103_+\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	7.66111e-58
NC_020449.1\|WP_015424500.1\|868545_869703_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	1.62534e-170
NC_020449.1\|WP_015424508.1\|875079_875880_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	8.53478e-79
NC_020449.1\|WP_015424506.1\|872630_873512_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|133469	cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.	4.04177e-147
NC_020449.1\|WP_015424499.1\|866366_868325_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_020449.1\|WP_015424505.1\|872256_872634_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.10808e-22
NC_020449.1\|WP_015424498.1\|865808_866366_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	9.46144e-51
NC_020449.1\|WP_015424509.1\|875876_876782_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.67739e-88
NC_020449.1\|WP_015424503.1\|870657_870894_+\|DUF4405-domain-containing-protein	gnl\|CDD\|379580	pfam14358, DUF4405, Domain of unknown function (DUF4405). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 50 amino acids in length. There are two conserved histidines that may be functionally important. This family is N-terminally truncated compared to other members of the clan.	0.00101817
NC_020449.1\|WP_044278897.1\|858127_858559_+\|ribose-5-phosphate-isomerase-B	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	3.18621e-74

>NC_020449.1|WP_015424499.1|866366_868325_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVVEGGKPVVITNAEGSRTTPSVVGFTKDGQRLVGQLAKRQAITNPQNTVFSIKRFMGRSYDEVTQEIKQVPFKVVRGLKNQAVVHIDVENKDYAPQEISAMILTKMKETAEAYLGQKVTEAVITVPAYFNDDQRQATKDAGRIAGLDVKRIINEPTAAALAYGMENKKEQKVAVYDLGGGTFDISILDISEGVVEVLSTNGDTHLGGDDFDKRVIDWILEQFKKQEGMDLSRDPMAMQRLREAAEKAKIELSGTLTTNINLPFITADATGPKHLNLDLTRAEFNRLTSDLVERTLGPCKRALDDAKLKPSDIQEVLLVGGSTRIPAVQEAVEKFFGKNPNRSLNPDEVVAIGASIQGAILSGDEKVSDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSEIFSTAADNQTAVTIHVLQGERPMAADNKSLGRFDLVGIPAAPRGIPQIEVTFDIDANGILHVSAKDKGTGKEQSIRIDRAGSISKEDIDRMIKDAELHSEEDKKRQEFVVAKNELDSLIFSTEKSLNEYGDKLSSSERSELEEEIKNAKEQMERATEASELNNIKENLAKKAQHLGEVIYAHMQQQQSAGGEGYSQDASGFNSGGYEQGPQEENPKQEGPIDADFEVVDDK
>NC_020449.1|WP_015424498.1|865808_866366_+|nucleotide-exchange-factor-GrpE
MNKKIPKEPELEKEELITTEVSEEPKAKKIEELEKEVAEWKDKYLRCMAEFENFRKRTISEKAEWIRLATQKFALEICDVLDNFERAIQQATEEEKSTPFGKGVLMIEQQLRKALEKEGVKKIEALGEPFNPEFHEALAHIPSDQEENTVTAIIQNGYIMHDKVLRPVRVAVSNGSKINNESQEE
>NC_020449.1|WP_044278899.1|864759_865812_+|heat-inducible-transcription-repressor-HrcA
MKKNVLRLNETLKALVDEYIMSCEPVSSRILNEKYLRNVSSATLRLDLLKLEKMNLISQPHTSAGRIPTIKGYREYLRLIEPEIEKIRYEGMDLLREILVRNYKDTPRALYYIMENLAKETDQLSFVAEPEVSSGYLAKLDVFSIGENKLIFVMSLDSGLDKTVILKCDNELTEAQLKKLVRYLNDELAGLQIYDIANRVLVEMQENADNGMISWFLAELHKAFMEISDFFIHYDGSINFLEQKEFDDKENILKFMSLLQRQDFLLNTMRKHQSDKEVNVVLGEDLAKGSWLDFALIYAKYEVFGIPGYLGVLAPVRTEYRKLIPLIRDVANTITNTTKRGMVVPQEKKE
>NC_020449.1|WP_044278898.1|861992_864551_-|HAD-IC-family-P-type-ATPase
MKEYSNLKQGLTTKEVEEKLRREGYNELPGSKGRNLGKLIWDIISEPMFILLVACAVIYFFLGDLQEALVLTASVVIVMSIELIQERKTEKALEALKNLSSPRALVIRNGEQIRIPGREVVTDDLIILAEGDRIPADAYILENDLLSVDESLLTGESVPVRKRIWDKKERPSTPGGDDLPFVYSGTLVVSGRGIAQVFATGERTELGKIGKSLETITEEETRLSKETGRLVKYFAIFALLICAFVVIVFYVTRKHLINALLTGITLAMSVLPEEFPVVLTVFMALGAWRMSKKNVLVRRLQAIESLGSATVLCTDKTGTITYNKMTLQKIVSNSENIELKNSAKLSEPILNTLIHSVLGSMREPFDPMEKAIHNALNDLDPSIYAELQTYQEIREYPLTDELRAMAKVWKISGKTNYTVALKGSPEAVIKLCSVNTEEINAIMKQVSDLAEEGLRVLGIASCEIKTDVLPEKLTDLSFCYLGLIGLADPIRETVPEAVKICYKAGIRVIMITGDYIGTAKAIGKQIGLKNVDNIISGSELDQMSDEELAEKCKQVSIFARVVPQQKLRIVQALKANGEIVAMTGDGVNDAPALKAANIGISMGLRGTDVAREASAIVLTDDDFSSIVSAVKMGRRIYDNLRKSFTYVFSLHVPIAGMAMIPASFADYPIIYFPVHIAFLELIIDPACSIVFEMEKEEDDIMERPPRSVDEKLFGTKRLIIGFLQGLGVLILLLLMYFWGINRGMGENHLRAHIFTTLVFSNLMLITTNRSWHKNLFQIIRTPNKGMTYLFLGVFAIVLLMIKVPSVTNIFHLETMSIMELLTCLILGNMSVAWFEIYKLIVNRKSANKHLTE
>NC_020449.1|WP_015424495.1|860209_861103_+|exopolyphosphatase
MSIAAIDCGSNSLKCLIAEKRGENFNCLKDLRFQTRLASALNTNGFLSATAIEKTITILKHLQENEFPAYQIEEIRAVGTEAIRQAANKQEVVDRIFRETGIQLSVINEAQETFLEWKGVLSGLKKPLQPITIFDSGGASTEIINGNKGLIHKATCFPVGAVNFTQRYVHSDPISPIDFEELVRNIFQSLPQSFMIQDTFIGAGGGVYVCACVASGGKINSPEEAEGYEITLSELERQINLYQHTNLEQRKQILGMESERADIMLAAVLIYWTLLKASGKDNFLVSTRGIRYGLIAI
>NC_020449.1|WP_015424494.1|858558_859851_+|serine-hydroxymethyltransferase
MNHIQKTDPEIYAAIMNELKRERENLELIASENFTSLAVLEAQGCVMTNKYAEGYPYRWSKKTGAINYNLYGRYYGGCEFINDAERLAIERAKQIFGAEHANVQPHSGSQANMAAYFTLVKPGDTVMALELSHGGHLTHGHPLSFSGQLYNIVPYTVNKETEQLDYDELEALAMEHKPQMILAGASAYPRKLDFARFREIADKVGAKLMVDMAHIAGLVAVGLHQSPVPYADIVTSTTHKTLRGPRAGLILCKEEFAKEVDSKVFPGVQGGPLMHIIAAKAVAFQEALQPEFKIYQQKVVENAETLANALIKKGFKLVSGGTDTHLMLIDLGPEVNGSPSGKKMEEALDKAGITANKNTVPFDTRSPFVASGIRLGTPAVTTRGMGKAEMEQIADLIKRVYDHIDNEEYLQELKKEVHSLTDKFPLYPEL
>NC_020449.1|WP_044278897.1|858127_858559_+|ribose-5-phosphate-isomerase-B
MKIAIASDHAGFEMKEAIKNAFPEIEFVDFGTHNTESMDYPDTGFPAAKAVAEKQCEKGILICGSGIGMSITANKVKGIRAALCGNTDVARLSRLHNDANILVLAGRFTAIPYAIEITKVWLNTPFEGGRHLNRINKIQQGER
>NC_020449.1|WP_015424492.1|857222_858131_+|phosphate-acetyltransferase
MITKLDELAEKAKNSGKKTRIAVAVAEDSNTINAILRATYEGFIYPVLIGNEIKIKELLTSNIASNQFEIRNITEPNQAVKEAVGMVRNNEADVLMKGLIGTDTFLKAVLDKEKGLLPPKAVMSYTCAIEIPKYHKLLFVSDTAVLIYPDLDQKIAMINYSVAMARRFGIEKPKVALISATEKVSPSMQETLDYALLCKMAERGQIKNCIVDGPLDIFLACDPNSLAIKGIQSPLEGDADILIFPNLESANSFYKGLMLFGEGELAGLICGTTKPVIVMSRSESENSKYYCLALSCLMAEEK
>NC_020449.1|WP_015424491.1|856318_857221_+|hypothetical-protein
MQISKLDQMFDVLATRPKKRLVAAWGVDSHTILAAYMAVEKGIVDATLVGDEKLILSVCREHNLDCSQFNIVHCPTDVKSAALAVEMINKGEGDFLMKGLLSTDRYMKAILNKECGLMDPGAILSHVTVAEPRNYHKLLIVGDVAIIPLPDLNQKIAITNYLIKTAHILGIENPKVGLLSASEQTLPKIPSSAEAAIIAKMAQRGQIKGAIVEGPLGFDMIIDRESALIKGVDSPVCGDADCILFPNIEAGNTFYKTIIKLLKSELGAIVMGARVPCVLTSRGDGERSKLYSIALAAMLA
>NC_020449.1|WP_044278895.1|855757_856306_+|hypothetical-protein
MHLLNRMVICTLTLFSFACANIPKSRTEEEKRIILPEGETSANCITVEELESFSFNTLECIQAFLAGDWFTRFEKSSRPLIFLCPPETEPAFREQGKNFIGLFCADILQTQAVNLVVCDSVFTLSENREKILQLVKKSGADFFLQSIIAMEEGIPLLKLNLYNVQNLAIVYNDTRSLLLIKI
>NC_020449.1|WP_015424500.1|868545_869703_+|molecular-chaperone-DnaJ
MAKRDYYEILGVDRNADEATIKKAYRKLAMQYHPDKNPNNKEAEEKFKEASEAYEVLSDKEKRQIYDQYGHSGLENQFGGTGFSWEEFMHRSDLNDIFGDGLGSIFETIFGGGFGGRNQRSSSSSNRGEDLQIELSLSLQEIANGVEKTIKIGIKEPCDKCGGSGSAEGKTETCPNCKGTGQIRQIRQSLFGRMQTVSECPTCNGEGRIIKNKCSKCYGEGRVGTVKEIPINIPPGVEDGQYIRFRGQGNAGPRGGSRGDLLVLIHQKKDDLFEREGNNIILEYPITVSQAVLGDEIIVPTLTGSVKMKVPPGTQSGRLFRLKGQGIQGHNSYSRGDQIVRTIVVIPTKLSREEVELYNRLREFDRKRDLKPGKSFAAKLKSYFS
>NC_020449.1|WP_015424501.1|869708_870410_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPSLYLPELSSDKKIIAVEGEEFHHLINVKRTAIGELVKLNSGSGLMAEGKLTEIHKNSAVIEIIKIETFPFPERPFAIAFALIKNKHDELLIEKCTELGVTAFYPMLTDYSVRIPSKNTTQRFKRTALAAIKQCDNPWLPRINEPLSFKQAIEKIISEGWIPVLCSEKRPAKKISALPNNIKPCFIIGPEGGFSEAEFAFFNEKNIFQISICHHITRAETAAIAVAAQFQLF
>NC_020449.1|WP_015424503.1|870657_870894_+|DUF4405-domain-containing-protein
MNNKKLKILNPIMFVVLFIAVAAIITYKISELCNYDAYGFKEIHEICGFLFIILVIFHIAYNWQWIKSQIFGIKPMKK
>NC_020449.1|WP_015424504.1|871203_872256_-|tetraacyldisaccharide-4'-kinase
MDANKLIQNHLLKRSPLSYTLYPAGVIYGFLQKLRRTYYQRNEYKPPCKIISIGNIVSGGSGKTPLTISLAKLLIKEGIKVAISHRGYKGAWENNPHIIADDSGLLYDVQQTGDEAYLIASSLPQIPVAVGRKRKEAIQLLLQNYPDLEIMILDDALQHYYVHRDLDIISFDASLGLGNGFVLPAGYLREPISNIPPNSIAVINHKNEEQTQIPWLEKIIRKGMPVFHCFSSPSCFKDAAGNTFPFSYIEGKRIVLTSAIANPDSFEQSVCSLGLSFMKHYAFKDHYAFSNTSLPQKLLELNPDFILCTQKDIMKLAKYESLKSRLLALELEYSFEQQEQFVNLVLSYVR
>NC_020449.1|WP_015424505.1|872256_872634_-|response-regulator
MKTKKIICIVDDEEDLVENLKIELEAIRPDWKIITFSEGMKAIQEIVKGNVDLVVTDIAMPDMDGYELFWRIKDYNEKIPVIMMTGFGYDPNHVLVRAKVDGLKDVLYKPFETEKLVELIESHLQ
>NC_020449.1|WP_015424506.1|872630_873512_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MYNEISQLPLVQQSRQGKVRDIYDLGETLLIVSTDRISAFDVVFPTLIPDKGKILNAISVYFFNATKDIVPNHFITANISEYPVELQPFGEYLEERSMLVKKTRVIPFEFIVRGYLSGSAWKEYKKSNTIGGMLIAEEMQESQKFPHPLFTPSTKAENGHDENISYREFMSRMDESLAVYIKDKSLELYSYAHDLLLKKGIILADTKFEFGTIGSEVLLIDELFTPDSSRLWSLEDYEMGKSPKSYDKQFIRDYLENSGWDKQSPPPPLPEEVIEQTRQKYLTILKIITGKEL
>NC_020449.1|WP_015424507.1|873521_874460_-|hypothetical-protein
MNEIKIDKNIQNEFDALPKGWVFYHIFGAGEVLYAGYSANLKAKLKFLSNKAKEGGIYQELWNLAEKLSWITYPQAIFALIHYKCYLTENSPLYQYQIRPWADYVYLALDSHRFPFITIQEHTNDDWLYLGPFRSRFFLIDVLDIYARILKLPACETGEYPCEKREKNLCQGWCLALDENSEKPTDYDLDKLESLLKEAFLVPENSILELIQQERNKYFNALEFDKSSLLDEDIEILNKYREWLKFLISAKHLEYESNELKIQKGKITYCRFQGKDYYFPVDNIEFRINETLALNLDSVDESKVIYDFLQKM
>NC_020449.1|WP_015424508.1|875079_875880_-|ABC-transporter-permease
MKHLSLGKFFKGMNLTVFTLVMVFLYIPILILIIFSFNDAKIITGWKGFTFKYYVLLWQNKTILEAFRNTMLIAGLSTLISTVLGVLGALGLEYHKFSGRKLFSALIYIPLVIPDILMGVSLALLFNFTRVNTGMLTVLIAHITFCISYTVIVIQSRLEGFDYSLVEAAMDLGAKPATIFWKIKLPLIMPGIIAAGLLAFTLSIDDFIITFFTSGRGFDTLPIYVEGAIRRGTITTINSLSTIMIGLTLMLVIATKRIRKIVISAL
>NC_020449.1|WP_015424509.1|875876_876782_-|ABC-transporter-permease
MKIIPYDNPNYALQMAAERRKNFTSWILTAPALLWLIFFFLVPYIIVIIYSFLTADIYDVKFEFTLDAYRQSFTPAYLHTFYLSFRLALLTTVLCLLLGFPVAYYIARAKDKVKNTLLIFIIIPFWTNLIIRIFSWRIFLAYNGVLNNLLLSLGLISQPLEIMRTDLAVILVMVYVYLPYMILPLYSVLEKLDWSLLNASMDLGANEVKSFFRITLPLSKEGIFAGGLLVFIPALGSYLIPQLVGNQKSLYLGQVITYKVKNIPRNWPMASALSLTLLLIVALFLLVIYFLYRKSKSRRQL
>NC_020449.1|WP_015424510.1|876778_877966_-|ABC-transporter-ATP-binding-protein
MEEIRLENLSKDFDGFVAVENVSLAIQSGELFSFLGPSGCGKTTLLRMIAGFEIPSTGRILIGNTDITDLPPYKRQVNTIFQNYSLFPHMTVFDNVAFGLRIRKSPKNEIKNRVREMLSLVKMEDQANKFPEQISGGQKQRVAIARALINQPKVLLLDEPLAALDLKLRQHMLIELMNIHDAVGITFIYVTHDQGEAMSISDRVAVMNYGNIIQEGPPDDIYERPNSVFSAYFIGETNLISGEVISIEDDYVQIRCPDGTGNSFEIDSTFHFQPNIGQELTVSLRPEKIAISRNKPRYQDDINILRGVIEDILYLGSHTQYIVRVGALKIRVFSQHKRVYFDDTALDWEEPVWLFWHDTDSWLINEIPENVLTPEEISEGGVNHYQRSIKKPVVQ

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Crispr_ID: NC_020449_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_14

947197-947337

Orphan

Consensus_repeat	Method
TTTACGAGGGGCTTACGCCACCATCGCTATCATTGTGTCGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_14

>merge|NC_020449|14|947197-947337|CRISPRCasFinder
TTTACGAGGGGCTTACGCCACCATCGCTATCATTGTGTCGCCCTCAGGGGCTTTTTTTACAAGGTAAGGGAAAAAGAAAAAAATTCGGGGCTTTCATTTTACGAGGGGCTTACGCCACCATCGCTATCATTGTGTCGCCCT

>NC_020449|14|12|947197-947337|CRISPRCasFinder
TTTACGAGGGGCTTACGCCACCATCGCTATCATTGTGTCGCCCT	CAGGGGCTTTTTTTACAAGGTAAGGGAAAAAGAAAAAAATTCGGGGCTTTCAT
TTTACGAGGGGCTTACGCCACCATCGCTATCATTGTGTCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424567.1\|957340_958651_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_020449.1\|WP_157859997.1\|938545_940150_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_020449.1\|WP_015424562.1\|950078_950507_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|366034
NC_020449.1\|WP_015424549.1\|931253_932846_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_020449.1\|WP_015424560.1\|947629_949633_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_020449.1\|WP_015424559.1\|945629_946265_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NC_020449.1\|WP_015424550.1\|932858_934103_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223080
NC_020449.1\|WP_015424551.1\|934668_935865_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NC_020449.1\|WP_015424558.1\|944410_945646_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424548.1\|929658_930681_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NC_020449.1\|WP_162010052.1\|952202_955241_-\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|143478
NC_020449.1\|WP_157860038.1\|960019_960544_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_020449.1\|WP_015424556.1\|943414_943738_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_020449.1\|WP_015424563.1\|951323_952199_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_020449.1\|WP_015424565.1\|955369_956662_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NC_020449.1\|WP_015424561.1\|949758_950082_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424552.1\|936358_936508_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_157860037.1\|958653_960012_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NC_020449.1\|WP_015424566.1\|956654_957344_-\|polyphenol-oxidase-family-protein	unknown	unknown	gnl\|CDD\|319354
NC_020449.1\|WP_015424557.1\|943742_944015_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424567.1\|957340_958651_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.51365e-73
NC_020449.1\|WP_015424551.1\|934668_935865_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NC_020449.1\|WP_015424550.1\|932858_934103_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223080	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism].	3.86747e-117
NC_020449.1\|WP_015424549.1\|931253_932846_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_020449.1\|WP_015424560.1\|947629_949633_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_020449.1\|WP_015424559.1\|945629_946265_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.61858e-90
NC_020449.1\|WP_015424562.1\|950078_950507_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|366034	pfam00334, NDK, Nucleoside diphosphate kinase.	3.21119e-56
NC_020449.1\|WP_157859997.1\|938545_940150_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.36949e-43
NC_020449.1\|WP_015424548.1\|929658_930681_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	3.50735e-20
NC_020449.1\|WP_162010052.1\|952202_955241_-\|PD40-domain-containing-protein	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	4.26189e-85
NC_020449.1\|WP_157860038.1\|960019_960544_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	5.43648e-108
NC_020449.1\|WP_015424556.1\|943414_943738_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	4.79394e-44
NC_020449.1\|WP_015424565.1\|955369_956662_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	2.08019e-23
NC_020449.1\|WP_015424563.1\|951323_952199_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.82627e-12
NC_020449.1\|WP_157860037.1\|958653_960012_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_020449.1\|WP_015424566.1\|956654_957344_-\|polyphenol-oxidase-family-protein	gnl\|CDD\|319354	cd16833, YfiH, protein of unknown function YfiH. This subfamily contains YfiH, a protein of unknown function from Shigella flexneri, E. coli, and many similar proteins which collectively are often called DUF152. The structure of YfiH reveals a distant homology to Rho-activating toxins cytotoxic necrotizing factor 1 (CNF1) as well as chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs), all having an invariant Cys-His pair forming a catalytic dyad, and is required by the CNF-1 toxins for deamidation activity.	2.28975e-56
NC_020449.1\|WP_015424557.1\|943742_944015_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.57567e-33

>NC_020449.1|WP_015424559.1|945629_946265_+|uridine-kinase
MSQTNNVRLILIGGGTCSGKSTIAKAIGMRLNDLKTVIVAQDNYYKDLSHLTPAMRAKVNFDHPEAIDIPYLLSDLKLMLEGKAVDIPDYDFATHCRKEGKTCVAFADVIILEGIFGLYYPELLALSDLKIYVDTDSDLRLARRMQRDIVERGRDVESVLEQYLSTVKPSHEAFIEPTKKNADIIIPGDREFDNVLYMLNGYLLYEFIMER
>NC_020449.1|WP_015424558.1|944410_945646_+|hypothetical-protein
MCAGLDRVGSIKNSEHKKENMVMLTKKVLFIDEPFTIEEGIRAERSRFLWNVISKSFDADLLLLKSPVYMEKPVSLHTGYDKLYSLSLKEENNLESEAYHLLGKGQKERFINILDSKRYEVIFFAGLACLPLVCLAKKILPQCKLIIDIEKVWLPEIKEKWKDNKQLKNANYLWQYIRQTAWNKYLPKKGMFCLYANPGETDELFKCYHFKPENTHFVPLPITTIPELDKPGSNKKFILFWGAPESKDNLTAVKNIISEIYPRISKKMVEKEISIVLCGGEELQGLCSGRITYAPYNEKEQLLQEALLVLLPLNKPDTEGRILTCAQFRKTLVCTLSAIKNFPLPEDSYLVSDDFTELSEKIIELFRSAKKLDEYANKLSTFCFDNFTPEKVENALLIKIHSWIGNNVSNQ
>NC_020449.1|WP_015424557.1|943742_944015_-|co-chaperone-GroES
MKIRPVEDHLAVKLSTTENEKTVGGIIIPDTAKEKPQIAEVIAVGNDEDLQKIIKVGDKVLFGKYAGTEIEFEGEKLLILAKSDLLAIVE
>NC_020449.1|WP_015424556.1|943414_943738_-|thioredoxin
MAILEVNSANFETEVLKSTQPVLVDFWAPWCGPCKALSPTIDKIANETEGKIKVVKINVDEAQDIAAKYSVMSIPTLLIFVNGVVSDQLIGLVQKDKIMDKLNKFIV
>NC_020449.1|WP_157859997.1|938545_940150_-|IS1182-family-transposase
MSYREYNQEQTDIFGLDINARIPEHHLVRFVNDLIENMDLTKLHAQYSPEGSPAYNPKMMLKIIVYAYMNGIYTCRKIAKAVRENINFIWLTGDQQPDFRTINTFAWTRCKDVLAEVFCKVVLMAEEKGYLELDSCFIDGTTLRANAGKNSYIWKKSALRYQEQVKTRVDNLFCRIKKLNEEEQLQYGDQDLREVGTQLEFLNELNVEEAEPEEIAQAVEKAQSELQKAVDTLKTHLPSNAPAIKNINHLLSELNKIQKLDVPKLEKYDQQIEIIGKDRNSASKTDNDATFIRMKDSLLAPGYVSSISTSNQFVTAVHLYNVPREAVEYTTLMDIHYTSLGTYPKQVIGDAAYGISVNLDYTHKKKIVSYLKPPDYKRDYWDSLLPGFVYEETKDQWVCPNGKTLTLDNEEVVRANGPERTVKSYRCEDCQDCPFVQKCIPYKNKSGKNLVYDPYLSPLRQETVHNLQSKEGKKLMKKRCIEPEAVFASIKWNSKFSRFTVRSLSKCKNQLLLVLLGHNIQKFYNASMATMTGT
>NC_020449.1|WP_015424552.1|936358_936508_+|hypothetical-protein
MLIRYELKIETGYYTAKIDDLNTYSLRTELTGNDYLHFKCKGNVCRNEC
>NC_020449.1|WP_015424551.1|934668_935865_-|acetyl-CoA-C-acetyltransferase
MRQVVVVCAKRSPIGNFGGVFKDISAIHLGVTVLQSMLKETRLKLELIDEVIIGNVCGAGLGQNVARQIAIHSGIPENVPAYTVNKVCGSGMKAVSLATLMIGSGEADIIVAGGTENMSQIPYALTDARWGARMGNKEMVDLMIRDGLSDIFNNYHMGITAENLAEKYHISREEQDAFAAQSQNRTEEAQKAGRFKDEIVPFSIPQRKGEPIIVDKDEMPRAGVTVESIAKLRPAFKNDGTVTAANASGINDSSAFLILMSAEKAKELGLKPMATFVNSASAGVDPAIMGYGPVPAIKKVLQKAGWTLQDIELAELNEAFAAQSLAVLKGLELEGIGKLNPEIVNVNGGAIALGHPIGASGTRIIVTLLHEMKRRQVRKGLAALCIGGGMGIATLWEM
>NC_020449.1|WP_015424550.1|932858_934103_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MAEKLKLARSMSLFEEAKQLVPGGVAGIRRPYNFVPGEYPIFFDHGKGGRVVDVDGNEYIDFLCAYGPIIIGYREDEIDDAVINQIKNKGFCFSLTQEMQNTLVKKLRELIPCCEMAALVKTGSDATTIAIRVARGYTGKTKIARYGYHGWHDWCVEVKGGIPPKLYEDIYEFHYNDLDSLKAILEANKDDMAGIIITPIGHPNGAEVQMPKPGYLEAVRELANQYHCLLIFDEIRSGFRCSLGGAQKLFGVTPDLSTFGKAMANGYAIAALVGKEEYMQVLADKVFLSSTFFPNSDGIVAAIKTIEILERDRILDVVAAKGRKFGAEVEKVVEESGVPVNFTGAPWMPYITFKKDEAGLYKKLRTEYYTQLIRHNVFMQPYHHGYICYRHTDEDLAYTVEAIRESLAEVKKML
>NC_020449.1|WP_015424549.1|931253_932846_-|CTP-synthase
MAKYIFVMGGVLSSLGKGIATASIGLLLKSMGYKVVLQKFDPYLNVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFVDEALTKYSSNSAGQIYESVIENERKGVYLGKTVQVIPHITNEIKGRIQRLANDYDIVITEIGGTVGDIESLPFLEAVRQLRLDLGYYNTLYILLTYVPYIKSAGELKTKPSQHSAYKLREIGIQPDILLCRSEKPFAEEIYNKIALFTNVPRENVINAIDVDCVYEIPLNFQKAGLPEIICQHFKLEQRPIIMQDWLQFLENTKNAKETVTIAVCGKYIQHQDAYKSIREALLHAGSALLKKVEIIWIDSERNFKEEDIAKELKGVQGILVPGGFGVRGIEGKIAITKYARENNIPYLGICFGMHIAVIECARNLANLASASSIEFDEFTPNPVIHLREDQLHREKVGGTMRLGAYQCNLVKGSKAFEIYQTETISERHRHRYEFNNDYREVIQKAGLKISGLSPDGLLVEIVEYTELDFFVAVQFHPEFKSRPINPHPLFREFVKAAAKK
>NC_020449.1|WP_015424548.1|929658_930681_-|ABC-transporter-substrate-binding-protein
MNNRQIIYLLIALMIAIFFFTSCKQETNVQPEIPEAEAANTAQKSSLFTIRYRPVWTAQAEFAGVYMAQKKGFYQNKGLNVIIQPGGIQYPPYENLQLGYSDIVQMSLLTAVKRDAENGNLINLAQITQRTSLMLVGKKSRGINSIPDFEGKKIGLWKTDDRLLSLIFLQQNKLNMDIVDLDITINLFLKDGIDVMNVMRYNEYHQILQAGIDPEDLFSVAFADIGLNVADNGLYTTREFYTKHPKQCRDFASATIQGWLYALNNQEETVSTVLEVMHQYHLPANRPHQKWMLKEICQDFTVHKNQEGILQESDFNKAKKLLTDQNIPATQQTYKSFFPR
>NC_020449.1|WP_015424560.1|947629_949633_-|excinuclease-ABC-subunit-UvrB
MQRFKLISDYTPSGDQPEAIEALIKGIEEGKRHQVLLGVTGSGKTFTIANVIAHFNRPTLVLSHNKTLAAQLYGELKQLFPENAVEYFISYYDYYQPEAYIPGKDIYIEKDSSINEQIEKLRLRATMSLMERRDVIIVSSVSCIYGLGVPEEYREALISLKKGMKMDREELIHQLISAHYSRNDIAFERGAFRVRGDVVDIFPAYLEHCLRVEFFGDEIYRLEKIHPISCQPLGEVEKYDVYPAIHFLMNEEKLRKALISIEQEMNERVAWFLQNQKYVEAERLKQRTTFDLEMLHELGYCSGIENYTRHLTGVKPGEPPNCLLDYFPEDFLMVIDESHVTIPQVHGMFAGDYTRKKNLVEYGFRLPSAFDNRPLRFEEFEKFMHQVIFVSATPADYELSLTKGEIVEQVIRPTGLVDPEIEINPIKHQVDDLIAQIKERVAKKQKILVMTLTKRMSEDLSIYLNNAGIKARYMHSDIDSIERAKIIRDFRLGEFDVIVGINLLREGLDLPEVSLVAILDADKTGFLRSTRSLIQISGRAARNVDGKVIFYADEITDAIKQTVAETNRRRAKQLAYNEEHGITPQTIYKTIDQIMQSTAIAEGYDKIAKQATFEKPSAKEFMEYLELDNKEKIIELLTKEMNKAAANLDFEHAAELRDKLWELQQNI
>NC_020449.1|WP_015424561.1|949758_950082_+|hypothetical-protein
MLNHEDLQINYENLLKLGYVVVDIRYKEYDICQETPKLVIARVDSDRDDFYQDMLKLYTGIEFKPNEMYEIWTDILKHKIKMSMVLNRDIAIKVAALDFIETVYTAK
>NC_020449.1|WP_015424562.1|950078_950507_+|nucleoside-diphosphate-kinase
MKEKSLLLIKPNAVRNKHIGHIITILEENNFHFCALKIFRFNRELAEHFYAEHKGKSFFENLLNFMMSDFIVAIIVQKDNAVQELRDLIGDVNPEKRKPGTIRYLYAEGITENAVHASDSIDSAKREIGIIFNTENTENTEK
>NC_020449.1|WP_015424563.1|951323_952199_-|tetratricopeptide-repeat-protein
MNLNEINNLIQRANALVKTNWLQAVYILQEALKEEPDNLSLLVNLGDIYLERQLFERALSYYLKAISLLPDNPQLLFLIGTCYFSLGEYRIANSYYNRIPDPPPEILYNIALSYAFLGSYQESIDIIHKILKVMDDNPFIYFLLIEQYVRIQNYDRAYEIILTAENKFGKHRQLLLLSALVYGKKGIWLKSYHCFAEYESLGEITNPDHLMAYANAAVNIGMNDRAIELLQRAQEINPYINAVYEELIRLYLKKNDYKNAKKVLDIAKRYISRFSPVLYLFKERLENPHLE
>NC_020449.1|WP_162010052.1|952202_955241_-|PD40-domain-containing-protein
MCYVYSNDLWLVPFAGGIPRRITNTTSYEWNPQFSPDGKMLAFSSDRSGQNLIYIMPATGGEAKAVNYESFRISEWFSDSQNLLCTKYSPRWGLSFYKVPINGSRPVLLAEIGSSFATLSPDNKQIVFQKGGYSRREAYRGSGNGELWLIDLPTKKYTKLTNTELSELYPSFSQTGALYYCASDGKCFQINKVNKLSFRKPEKITNLKPFSARRISLSRNNDRLVFEYFNTIYKYDPTLKTGEKVSPLFIDLCEDEWQENIVRSYENTTIDDYTISTDELLVGFTHNYDSFFAPVKGGEAKQISFDHGSIFGLQFLDKRQMVISKLDNGIVKLFTATADSVITLSPVDWFGADSLCVTELYKDKNGRWYFKYDDYYRHQKIAIADSGFVNIRPVNTPWAVTTNFAFTEDGRYAVYGTLREDNYVKELYLYDVQADSSKRLLADNGWWQNLFWTSDNKSILLTRNSDIYRLDLVPRDEFELDTDPWDEILHPEKSKADSTNEEMQNEKKGIQEIESTWKEKKEEKPKPLEIVWEGLEKRFYPVITAKDNYNFVLDIISDSTFYYIENNGQQEKNSILKKANIYGKNQKEVFNFGRNAGYYNKVNNTVYYLINQELKSYNLDTSARKDIKIKYDYKYDKVLLNLRVFEEVWCAFGNNFYDPAMHNVPWKELFQLYRPYVEKAKDIYDVAFIIEEMIGDVNASHTGFYPREEYKPFTNPVAWLGADFDYKNILAEGIRLERIYPTSRLGSFYHLQDGCILTHIDEVKITAHTSLDSLLAGKIGKKIKLTILQEGNITEAVITGLSYSQMSELKYDYQIAKNKKLVDELSHGKLGYIHIPAMGENDWQKFYRDFVVDNFDKDALVIDVRGNYGGHIHDKLITLLQKKKYAYTTSRRYSRVLCYEPHNIWDKPSIVLVNEDSFSDGEIFPTVYQELKLGKVVGTPSSGAVIGTWHYYLQDGSSMRMPGTGWYKLDGTNMEGTGVQPDIVVENLPEDIIAERDPQLIRAVKELMKELK
>NC_020449.1|WP_015424565.1|955369_956662_-|DUF342-domain-containing-protein
MAKTYVNKEGNLILEIREEPLSAWLTIKKTDFLIDENEILALIEEAGIKSGFDEAIDYICKHSLEKEFEVPFPIAMCNKKEVTSMLRYNFNPDLLSRPENGINISTLEKLKVFRSGDVVAEYSSNIFAQGGSIYDIFGNLLDANSVDTEQAKALAGDNIAYDVQNKQFSALVDGFPYLDENGCICLLDRVLLNGNEIPPETKVKCPINLIIEGSITYADIHCEADISVQGDIQFSTINCAKNMFIAGDIISSNRKGIIVWGNLECRSILNSYVLCLNNIHFTDKIENSTVVCDGEIIGDLNSSEICGGLTQAGESITVFQAGSYDRTKTEIEIALCPFYRNLLLLLIRELIHLKEDKELNATTIAELENRIEKYERALDEKLNQILKSEKQKPKKIKVQDVIRPPVVFRILKHSYEVNRPEKGLEFEEKD
>NC_020449.1|WP_015424566.1|956654_957344_-|polyphenol-oxidase-family-protein
MKLFYYLGKREPDYRTLMHLQKDFMLEGIKIPVSRLVIAEQTHSKEVHICREIDCGAGIGKKPQIPLADGLITNIPYQYLLIRTADCYPILLMDSRRNVVAGLHCGREGTQKNIVGEAIRKMKSHFYCQLTDIIAIVGAGICHKHYEVSQELFDDFNRALRKMGLEPDLTQNRHLNLRKILNAQLIKEGIPEINIENVTDCTFESSNYHSYRREKTKNRQINIVGILYG
>NC_020449.1|WP_015424567.1|957340_958651_-|MFS-transporter
MVINKIKEIFVSLTIRNYRIFFMGQGISLIGTWIQRTTMGWFVYRLTGSAFLLGLVSFLSMIPSVFVSPFIGAWADRLNRHRTMIYTQIAFCLQTGILALLVLTRVINKQVWYPILILSFIQGIIDAVDAPIRQNFVMDLVSSRTLLPNAIATNSAMFNGARLIGPAIGGFLIMMFSEGVCFAINAISYIPVIISLCFIKISYPPVPPQKEPTLKKIFSGWKYSWENMPIRFLLSNLAVFTVFGMSFSTLMPIFAKDILHGTSATQGLLMSSMGVGALCGSFFLASRKNIRGMPTRLVYLCLTFSIACILFSLSGSIPLSMFFMVFLGLAGMMTMATTNTLIQSISSLEMRGRVISLYTMASASMSPLGSLLMGTLSSRIGARFTLIVCGLLLLLWSLNGLRIVPKFLRGVLRMLVISDNTDVYRQRVLAPEISAR
>NC_020449.1|WP_157860037.1|958653_960012_-|ATP-dependent-protease-ATPase-subunit-HslU
MNEYLTPKRIVEELDKYIIGQDQAKRCVAIALRNRWRRQQISGDIKGEIMPNNIILIGPTGIGKTEIARRISRLTNAPFIKVEASKFTEVGYVGRDVESMVRELMNYAVSQVREAMIEEVRPEAEKNATEMILDILLPRSKKMKQNANNTDTPEYERYLRSREKMRKKLLSGSLDEKEIEVEPETDNLPNFEIFPGPGLELLDFDISEMISNIFQGKGTPRKVKTTVHSAWKLYVENEINRLISKDKLVETAKMAVEENGIIFIDEIDKIANTDKQVGIDVSRSGVQRDLLPIVEGSKVPTKYGMIDTSHILFIAAGAFNTAKPSDLIPELQGRFPIRVELNSLTQEDFERILTEPENSLTKQYQAIFRSEGVELKFMPEAIREIARFAALANEKMEDIGARRLHTVMNKLLDDFLFEMPSETLKSVKITKKMVTEHLSPVIESEDLSRFIL
>NC_020449.1|WP_157860038.1|960019_960544_-|ATP-dependent-protease-subunit-HslV
MHGTTIIGIHRNGKTAICGDGQVTMGDAIVKGKAQKIRKIYDGKVIVGFAGATADAFSLLERFEEKLKTNKGNLKKAAIDLAKDWRQDRILRRLEAMLIAGDKDSILLINGAGDVLEPDDNIIAIGSGGNYALAAARALAHKTKLGASEIAVEALNIASGICIYTNNNYIVEEI

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Crispr_ID: NC_020449_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_15

964886-964970

TypeIII

Consensus_repeat	Method
GTGTTCTCGGTGGCTAAAAAATGAA	CRISPRCasFinder

1 spacers

cas6,cas10

The CRISPR arrays of NC_020449_15

>merge|NC_020449|15|964886-964970|CRISPRCasFinder
GTGTTCTCGGTGGCTAAAAAATGAATTGTAAGTATTTTCTCGGTGACCTCGGTGCTCTCGGTGTTCTCGGTGGCTAAAAAATGAA

>NC_020449|15|13|964886-964970|CRISPRCasFinder
GTGTTCTCGGTGGCTAAAAAATGAA	TTGTAAGTATTTTCTCGGTGACCTCGGTGCTCTCG
GTGTTCTCGGTGGCTAAAAAATGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424577.1\|972079_972517_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424567.1\|957340_958651_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_020449.1\|WP_015424571.1\|962778_963327_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NC_020449.1\|WP_044278913.1\|974726_977234_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_020449.1\|WP_157860039.1\|960550_962467_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NC_020449.1\|WP_044278910.1\|968492_969878_-\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NC_020449.1\|WP_015424572.1\|963307_964756_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NC_020449.1\|WP_015424573.1\|965207_967661_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
NC_020449.1\|WP_157860001.1\|971841_972006_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367360
NC_020449.1\|WP_162010052.1\|952202_955241_-\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|143478
NC_020449.1\|WP_015424578.1\|972547_973000_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_157860038.1\|960019_960544_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_020449.1\|WP_015424575.1\|969867_970899_-\|bifunctional-DNA-primase/polymerase	unknown	unknown	gnl\|CDD\|214927
NC_020449.1\|WP_015424565.1\|955369_956662_-\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NC_020449.1\|WP_015424563.1\|951323_952199_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_020449.1\|WP_044278911.1\|971248_971761_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_157860037.1\|958653_960012_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NC_020449.1\|WP_015424566.1\|956654_957344_-\|polyphenol-oxidase-family-protein	unknown	unknown	gnl\|CDD\|319354
NC_020449.1\|WP_083774677.1\|973217_973487_-\|transposase	unknown	unknown	gnl\|CDD\|307151
NC_020449.1\|WP_044278912.1\|973612_974557_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424567.1\|957340_958651_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.51365e-73
NC_020449.1\|WP_015424571.1\|962778_963327_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.06165e-82
NC_020449.1\|WP_044278913.1\|974726_977234_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.65071e-104
NC_020449.1\|WP_157860039.1\|960550_962467_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_020449.1\|WP_044278910.1\|968492_969878_-\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	3.17198e-07
NC_020449.1\|WP_015424572.1\|963307_964756_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.72247e-66
NC_020449.1\|WP_015424573.1\|965207_967661_+\|PKD-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.55323e-16
NC_020449.1\|WP_157860001.1\|971841_972006_+\|hypothetical-protein	gnl\|CDD\|367360	pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.	8.82618e-05
NC_020449.1\|WP_162010052.1\|952202_955241_-\|PD40-domain-containing-protein	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	4.26189e-85
NC_020449.1\|WP_157860038.1\|960019_960544_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	5.43648e-108
NC_020449.1\|WP_015424575.1\|969867_970899_-\|bifunctional-DNA-primase/polymerase	gnl\|CDD\|214927	smart00943, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	5.6947e-17
NC_020449.1\|WP_015424565.1\|955369_956662_-\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	2.08019e-23
NC_020449.1\|WP_015424563.1\|951323_952199_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.82627e-12
NC_020449.1\|WP_157860037.1\|958653_960012_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_020449.1\|WP_015424566.1\|956654_957344_-\|polyphenol-oxidase-family-protein	gnl\|CDD\|319354	cd16833, YfiH, protein of unknown function YfiH. This subfamily contains YfiH, a protein of unknown function from Shigella flexneri, E. coli, and many similar proteins which collectively are often called DUF152. The structure of YfiH reveals a distant homology to Rho-activating toxins cytotoxic necrotizing factor 1 (CNF1) as well as chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs), all having an invariant Cys-His pair forming a catalytic dyad, and is required by the CNF-1 toxins for deamidation activity.	2.28975e-56
NC_020449.1\|WP_083774677.1\|973217_973487_-\|transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	9.06746e-13
NC_020449.1\|WP_044278912.1\|973612_974557_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	8.89305e-06

>NC_020449.1|WP_015424572.1|963307_964756_-|tRNA-lysidine(34)-synthetase-TilS
MTIAEALKRLEKNIKENELIHNGDKLLLGCSGGADSNAMLYLFSRLRVPLNLTLLVIHINHQIRGAESDADEDFVKQLCQDLNIPVIIRKIVVPETGNLENQARKLRFEVFNKILESYNFDKILLAHQKEDQAETVMLNFLRGAGISGMAGIKGITGKVVHPLLCFSRKELEEVLKQAGISWRTDSSNLETKFRRNLLRNEIMPQLEKEFNPALKSHLFFLAELFSQAETIFKQRSKTQFRRLCIDIQPGKVVFELTPLLKLSPIERYYLFRSAFHYVCGSENDFFAVHFQAIENILNGKGSKCLNLPHKITVIKQYAEVIVQIETEKEVKETEPLVIDADRTMAVYGNYRFNFKYLRVLPKEQTGDELESRVILDADKINIPFIIRFRQPGDQFVPFGMTQLKRLKEFFIDEKVPKYERDLIPVFDDGEKLFWIVGYRLDNRVRYDENTTRYLQITATNISVKSRKAILKKKRGNNESDEL
>NC_020449.1|WP_015424571.1|962778_963327_-|hypoxanthine-phosphoribosyltransferase
MNQMNCDISAVLFDEYQIQTRIRELGLEISNSYKNSTPVMIGILKGGFIFLADLVRSITIPVEVDFLAISSYGTKTSSSGVVKIRKDIDIDITGRDVIVVEDIVDTGLSLAYIKDYIWQHKPSSLKTCVLLDKPDAHKTDVTFDYIGYSIKNEFVVGYGLDFAEKYRNLPFIGILKEELYKC
>NC_020449.1|WP_157860039.1|960550_962467_-|ATP-dependent-zinc-metalloprotease-FtsH
MLILLIVIIFHTYNSSGTAITKESYSNFMTRVANGQITQVQFAEKDIFYTDIANKKYSTTVPYENPQLVDSLVALGIKVSATKPSRWAGVISYLLPFLLLIIFWVFFIRGMNAQNAKAFSFGKSKARLYEASKTGITFKDVAGVDEAKEELQEIVEFLKDPKKFQRLGGRIPRGVLLVGQPGTGKTLLAKAVSGEAGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKKNAPCITFIDEIDAVGRHRGSGLGGGHDEREQTLNQLLVEMDGFEPNEAVIIIAATNRPDILDPALLRPGRFDRRVVVDLPDIKGRTEILKVHTAKVPLANDVHLELIARGTPGFSGADLANLVNEAALIAASKNKTQIQMEDFEEAKDKLLLGKEKKSRVIPEEDKKLTAYHEIGHVLTSVYLDKVEPVHKVSIIPRGFTGGATHYLMTDKTNYSKSYLLQMLVTLLGGRAAEEVVFQEYTTGAGNDLERCTDIAKKMVCSWGMSDKIGPITIGKEQGEIFLGKELVSHDIFSDETSQLVDREIRDIVSNAYSQAISLLNEHRELMDIMAKELQEKETLGTDEIFNLILENCREEERELVEEKYKKALELRFEHSEKTTSQPTETTETAETTETIEQAENKDNKSEETA
>NC_020449.1|WP_157860038.1|960019_960544_-|ATP-dependent-protease-subunit-HslV
MHGTTIIGIHRNGKTAICGDGQVTMGDAIVKGKAQKIRKIYDGKVIVGFAGATADAFSLLERFEEKLKTNKGNLKKAAIDLAKDWRQDRILRRLEAMLIAGDKDSILLINGAGDVLEPDDNIIAIGSGGNYALAAARALAHKTKLGASEIAVEALNIASGICIYTNNNYIVEEI
>NC_020449.1|WP_157860037.1|958653_960012_-|ATP-dependent-protease-ATPase-subunit-HslU
MNEYLTPKRIVEELDKYIIGQDQAKRCVAIALRNRWRRQQISGDIKGEIMPNNIILIGPTGIGKTEIARRISRLTNAPFIKVEASKFTEVGYVGRDVESMVRELMNYAVSQVREAMIEEVRPEAEKNATEMILDILLPRSKKMKQNANNTDTPEYERYLRSREKMRKKLLSGSLDEKEIEVEPETDNLPNFEIFPGPGLELLDFDISEMISNIFQGKGTPRKVKTTVHSAWKLYVENEINRLISKDKLVETAKMAVEENGIIFIDEIDKIANTDKQVGIDVSRSGVQRDLLPIVEGSKVPTKYGMIDTSHILFIAAGAFNTAKPSDLIPELQGRFPIRVELNSLTQEDFERILTEPENSLTKQYQAIFRSEGVELKFMPEAIREIARFAALANEKMEDIGARRLHTVMNKLLDDFLFEMPSETLKSVKITKKMVTEHLSPVIESEDLSRFIL
>NC_020449.1|WP_015424567.1|957340_958651_-|MFS-transporter
MVINKIKEIFVSLTIRNYRIFFMGQGISLIGTWIQRTTMGWFVYRLTGSAFLLGLVSFLSMIPSVFVSPFIGAWADRLNRHRTMIYTQIAFCLQTGILALLVLTRVINKQVWYPILILSFIQGIIDAVDAPIRQNFVMDLVSSRTLLPNAIATNSAMFNGARLIGPAIGGFLIMMFSEGVCFAINAISYIPVIISLCFIKISYPPVPPQKEPTLKKIFSGWKYSWENMPIRFLLSNLAVFTVFGMSFSTLMPIFAKDILHGTSATQGLLMSSMGVGALCGSFFLASRKNIRGMPTRLVYLCLTFSIACILFSLSGSIPLSMFFMVFLGLAGMMTMATTNTLIQSISSLEMRGRVISLYTMASASMSPLGSLLMGTLSSRIGARFTLIVCGLLLLLWSLNGLRIVPKFLRGVLRMLVISDNTDVYRQRVLAPEISAR
>NC_020449.1|WP_015424566.1|956654_957344_-|polyphenol-oxidase-family-protein
MKLFYYLGKREPDYRTLMHLQKDFMLEGIKIPVSRLVIAEQTHSKEVHICREIDCGAGIGKKPQIPLADGLITNIPYQYLLIRTADCYPILLMDSRRNVVAGLHCGREGTQKNIVGEAIRKMKSHFYCQLTDIIAIVGAGICHKHYEVSQELFDDFNRALRKMGLEPDLTQNRHLNLRKILNAQLIKEGIPEINIENVTDCTFESSNYHSYRREKTKNRQINIVGILYG
>NC_020449.1|WP_015424565.1|955369_956662_-|DUF342-domain-containing-protein
MAKTYVNKEGNLILEIREEPLSAWLTIKKTDFLIDENEILALIEEAGIKSGFDEAIDYICKHSLEKEFEVPFPIAMCNKKEVTSMLRYNFNPDLLSRPENGINISTLEKLKVFRSGDVVAEYSSNIFAQGGSIYDIFGNLLDANSVDTEQAKALAGDNIAYDVQNKQFSALVDGFPYLDENGCICLLDRVLLNGNEIPPETKVKCPINLIIEGSITYADIHCEADISVQGDIQFSTINCAKNMFIAGDIISSNRKGIIVWGNLECRSILNSYVLCLNNIHFTDKIENSTVVCDGEIIGDLNSSEICGGLTQAGESITVFQAGSYDRTKTEIEIALCPFYRNLLLLLIRELIHLKEDKELNATTIAELENRIEKYERALDEKLNQILKSEKQKPKKIKVQDVIRPPVVFRILKHSYEVNRPEKGLEFEEKD
>NC_020449.1|WP_162010052.1|952202_955241_-|PD40-domain-containing-protein
MCYVYSNDLWLVPFAGGIPRRITNTTSYEWNPQFSPDGKMLAFSSDRSGQNLIYIMPATGGEAKAVNYESFRISEWFSDSQNLLCTKYSPRWGLSFYKVPINGSRPVLLAEIGSSFATLSPDNKQIVFQKGGYSRREAYRGSGNGELWLIDLPTKKYTKLTNTELSELYPSFSQTGALYYCASDGKCFQINKVNKLSFRKPEKITNLKPFSARRISLSRNNDRLVFEYFNTIYKYDPTLKTGEKVSPLFIDLCEDEWQENIVRSYENTTIDDYTISTDELLVGFTHNYDSFFAPVKGGEAKQISFDHGSIFGLQFLDKRQMVISKLDNGIVKLFTATADSVITLSPVDWFGADSLCVTELYKDKNGRWYFKYDDYYRHQKIAIADSGFVNIRPVNTPWAVTTNFAFTEDGRYAVYGTLREDNYVKELYLYDVQADSSKRLLADNGWWQNLFWTSDNKSILLTRNSDIYRLDLVPRDEFELDTDPWDEILHPEKSKADSTNEEMQNEKKGIQEIESTWKEKKEEKPKPLEIVWEGLEKRFYPVITAKDNYNFVLDIISDSTFYYIENNGQQEKNSILKKANIYGKNQKEVFNFGRNAGYYNKVNNTVYYLINQELKSYNLDTSARKDIKIKYDYKYDKVLLNLRVFEEVWCAFGNNFYDPAMHNVPWKELFQLYRPYVEKAKDIYDVAFIIEEMIGDVNASHTGFYPREEYKPFTNPVAWLGADFDYKNILAEGIRLERIYPTSRLGSFYHLQDGCILTHIDEVKITAHTSLDSLLAGKIGKKIKLTILQEGNITEAVITGLSYSQMSELKYDYQIAKNKKLVDELSHGKLGYIHIPAMGENDWQKFYRDFVVDNFDKDALVIDVRGNYGGHIHDKLITLLQKKKYAYTTSRRYSRVLCYEPHNIWDKPSIVLVNEDSFSDGEIFPTVYQELKLGKVVGTPSSGAVIGTWHYYLQDGSSMRMPGTGWYKLDGTNMEGTGVQPDIVVENLPEDIIAERDPQLIRAVKELMKELK
>NC_020449.1|WP_015424563.1|951323_952199_-|tetratricopeptide-repeat-protein
MNLNEINNLIQRANALVKTNWLQAVYILQEALKEEPDNLSLLVNLGDIYLERQLFERALSYYLKAISLLPDNPQLLFLIGTCYFSLGEYRIANSYYNRIPDPPPEILYNIALSYAFLGSYQESIDIIHKILKVMDDNPFIYFLLIEQYVRIQNYDRAYEIILTAENKFGKHRQLLLLSALVYGKKGIWLKSYHCFAEYESLGEITNPDHLMAYANAAVNIGMNDRAIELLQRAQEINPYINAVYEELIRLYLKKNDYKNAKKVLDIAKRYISRFSPVLYLFKERLENPHLE
>NC_020449.1|WP_015424573.1|965207_967661_+|PKD-domain-containing-protein
MKPKIFFTIGALMLLFFFTACDKDEDNKPPVNTDITVALNNYWQYQTDLTSLMEEHDGTMNNIQSAILNLGSKKKNRDVFTDIGALVEAYNSQSNAIAGQFEVLVQAENAIIPYGESKGLLSSIAKGVYNKAKGAVESGGKMVYSGWNVLSGKKSIRQVLNDPNSGIPLISSWAETIQERNSARDAKIRDMIEHWNPVTSPEDCNYTIPYDDLAGATPQEKANTYLNMSDEDPVKMGMRRDVLLWSDDEREATAQTAKELGETGVKAVGDAYGGPVGEWTNEVVNQMMEENQTTADCGTTNIDFPVTGGKTLIIAKANMPEDNPRIAVVMNAPQNLEQQLPQGEYHIIAIAEGYIRGVYEYLQIVRNQVTPVVAELLKLAENPIIIENLAVDEGCIEVNQPVHSHITCVSTIGQELSFGWTVSGGSYTGFSANGTELTFTPTEEKEYTVTVDVSDGLNNHKIRSISLAALGGMLAIDDWEITDEDFMDNKLNPGEQLTVKLFVSNTGTTNLTGFHNVPSGTGFTSLFNSTTATIAAGTTITVYVPIRINSEISVDEINLQYQFTTQNQNNNTVLISDSVELPIDFYVTIDEISEVVTNRIVTITGKIANPSLNSALLILDNDSEHSFELNLDNGNFTQAVVLNGSTEEVQHTVYVVAVSGGLTAEDTMSFTSLVPLMALHCTLTWDTSGTDVDFWITDPNGEKCYWANRYTASGLALDVDDTNGYGPENITTESVIPGDYLVQVHYYSDHDNENAIGTNCVVVIRQSGLTPVNYYGYLSDTGDLWTVTTLHYDSVKGWSIKPNSNYCKINPNTMPKK
>NC_020449.1|WP_044278910.1|968492_969878_-|DUF3987-domain-containing-protein
MQYSTMQSISEQDILPEPIIGGNKQESKFNVDLLPDFLNDYIGIAQKGCNASAKALVASWLPVISVQLGNNVYMVNNSHKIYPNLWVILIGPSSQSQKSTAANMAISTLNPYLRSLDNKSETDYNKLNPIIGRVTQTKLGSMLKENPSRLLFLNEFGNLLELAHSSGNKGMIQTLTDLYDRNEYNYNSMSNNIIPKDCALSFLSCCTDSSMQQYFKTNADQNSGFLQRALYCIISPSSENTDITFKDNTACAEEIENYEKIFNLFRNIPGPFEIKLSESANKYATDYVNPLKDEIINEYGNNVWSYGVRIYTQAFLKISIIIFMMENIDDLRNAMETGKWADFFKSAQINQEQVTQALLLCDYFFNDVLKFINIIESGKLENEAKIIEKLYLCPDYKATHSELMRKTHLNANNFKKAIKTLIQQDAITVREEKSLGTYKKKLIYTLNPIAWDMYNLPHKPR
>NC_020449.1|WP_015424575.1|969867_970899_-|bifunctional-DNA-primase/polymerase
MLKGIIKTKVKVPNFSPNYDAEQPENKKKGHQAIVFVDLNNAWLYYEQLGYKLVTFTLEEKKGKKVVSNMPQWKNSSLSVESIKQEHNAIAIITGEASQLMVIDIDKRDADIYALLAEYGLEIDNYCYALTPSGGMHIYLNLSHSELWKKRYGRKTLTTTNKNIGIDIRAEGGLIFAPPSIVTNGGFYEWVNMPVNKEDTDYDPNKLIPIMDAIFGYNNNPTPLAPIQKTITKSYFPFTYYPNIQDNYDQAAQLIRKLNGTIINYNDWIRMGIALKNEFGKRGLSLWLLFADNSAYQDTEEYLIKKWNSFPITDDVHFGTFIYLTREYLRYENTYKGGKIYAV
>NC_020449.1|WP_044278911.1|971248_971761_-|hypothetical-protein
MNKPVEPIQTMLQTYPNFKGSKVIDLLYAHPDTPIPAADMELALNLQIPPDFINRNRYRFAPIRMTDEQTLRCVDKRLNRLIELKAFNATTAYDDEIQALIRYRKETTLPTGKIKCFNDDDSKAYDRLRKDIDTLLKQAEKDGYSEAVAIVKRCLHRGLNFFWDSRCSET
>NC_020449.1|WP_157860001.1|971841_972006_+|hypothetical-protein
MEKLLEKKEGRMKRGERRVSQRGKERKREFYKEEKRERENFTKRKREKEKIKSA
>NC_020449.1|WP_015424577.1|972079_972517_+|hypothetical-protein
MIVESKFELLFCGNCDGMVYYYNKRLGKMIARKWVKPKTTAANRRLGAITRNLKSLKPSEGFIKDLRVYIALYDYSPGERHYMSWQNVYLTLMYALAKQNPAVDLLTITREQITSDNLPCKSVKDAIEAGLLREVNGYENLTQEI
>NC_020449.1|WP_015424578.1|972547_973000_+|hypothetical-protein
MKVKFKYGIRTYSGTLDELTFGSYFKDRVCIARRYVVPRLTDQNDLIGSKMKNLAVIYGDVSESYKVELKQYAAMHSILTPKGKLPATAYALWVKMMFQFASADAEHIDLSTLTYSDLQTVGDDILSISSAVSNGFMDNVPGADKLTANM
>NC_020449.1|WP_083774677.1|973217_973487_-|transposase
MHFVLTVLIKLKDKEKIITQPKLKKDERAEVAHWSRIKCTNLMECLNEELKRREKCFRIFPDEKSYLRLFGAILHRFSEDWISRKRLSS
>NC_020449.1|WP_044278912.1|973612_974557_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MKYLEIKAFYLTDQPIGMITDLSSAIRGLWGRGLRKIYCYQKQLECSECPLENCTYYVLFEKQLSSSDQYHPYIIQSRVISPYLIEAKFKFFGWVCDHLEKLLYSIINTNNMLLKREGNSYRLTLQKIEDLNSNQIYSADSEMITRPTLKMLYFRPEEVPLLEITFTTPLRQKHQGKLMSEFMWEPFAKSLINRIRFINEHFNRNELNIPEQINLDGVEIKEANTYWSEKIRVSFRQESKMSIGGLLGSVVLANVSPEMIGMLKLGRYLHTGKQCTFGNGEFALRNLSENQSVTENKSTPSQNKEIYLSDKSPP
>NC_020449.1|WP_044278913.1|974726_977234_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MSLSIHHIVLAALMHDVGKVMQRAGCSDVPKYKEKCRKDSNNYLTYKHAMWTADFLDSHPLTLPEGNWESIVELASSHHCKDSWEMHNYDHYLDMIMQADQISSSWDREEPEESSTDKQRYLKVPLYSVFSKVSTGENKTATNSTQWTYPLQKLTPDNAFPKESNDLIDQRAAYKALFDSFEKDYSTLCEYYNDLAKKNIATFETEHFPQFIDAVDSLLKTYFWCVPANTMESTPIGSLYHHLHNSAAISAALYAQDECKEHSEPPFIIIAADLNGIQNYLYDLNPENSSKASKLLRSRSFQIQMIMEMLADKVINELDLSHLSIISSQGGRWFILANNSKENEQKLEEVKRTVNAEMFTRFLGLVSINLSWETKLGLADLGKEHFINTMNRVYEFLEKEKMNRFSAYLQKDNQWQTENFVINHDNLYSDQICDFCKRRNCDDKSNEKYREIESPEEENPRVCHHCLQEINLGRNLAENKNKLFKIWQGEEDKNTYIHFAGMNFSQVKADEPEALKGKEHYFCLSEENKNLQIPKRYLATQVPIKNGKVSTFDEIAKHNEGLQDNAVMKGDVDNLGYIISRGWQKDDSGNPICSITEYSTLSFMLDYFFSAYLPALIKKQYQDSIYTIYSGGDDFCLIGAYEKVIAFASELNEKFNEFCAKNPDIHFSAAITLAHSKEPIKFSINSTELRLKDAKQEPHKNSLHLYETIVQWDKLTDLLDFADKLNNWLDQEELTLQFLYRLLTYHQMYLETLNKENVNYRNFLYESLLNYDIKRNIEKMKDNKLTNPEIVNKLRSLTGLEEGNTMKYLRIPLCHTIYKNRNKTRTIKTKENKNV

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Crispr_ID: NC_020449_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_16

992831-998746

TypeIII

Consensus_repeat	Method
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	PILER-CR
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CRISPRCasFinder
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	CRT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	PILER-CR

77 spacers

cas2,cas1,PrimPol,csx1,csm6

The CRISPR arrays of NC_020449_16

>merge|NC_020449|16|992831-998746|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGTAAATACTAATCCTATCAGTTTCATTTTTCCTCCTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAGGAATAGTCATTTTTCCACGAAGCACTACTGCGATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTTAGATTGTGCATTGAATCGAAGGCACCATCCTTATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCAAAATATGGACAAGAACGATAATCGTGATAACAGATATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACCAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGATCGCTCTGAACCCAGATTTCAGCCTTCACATATGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACCGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCAACCTATTTTCTGTACCTGTTGAATGAGCACATTCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATGATTATGATTAACAAAACTACGGTTATGAATAGATACATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTGATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACCATCCACAAGCCATTTACATAGCCACATACGAATGCTGGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACCACATCAACTTCATAACGAAGCTAATGCGTTCGTTATAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACCCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGCATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACATTACTTTTTGGTTTTTTCTGTAAATCGCGACATAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACCTATTCGTACCCTATCATCACACGGATCATACCGGAAGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTTATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACAATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACCCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCATATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACAATAGATAAGGTTTCCCATTTTCAGACATAATGGGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTGATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAATATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGAAAACACTGGCACAGGATCAGCTCCAAAACTGATGATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACCTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGAAAACACTGGCACAGGATCAGCTCCAAAACTGATGATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACCTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACCGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGCATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTTATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACTTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACAAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGCTATAATCGGCTTCTGCAATATATATATTTACTCGTATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGAATTCATCGCATAGTTCTACATATTTTTCCACCACCCAATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTATATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACCAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGGATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCACAACTTTCTATTTCCGGATGGTAGAATTCACAGTATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACTCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTTATTGAAATAAATTTGACCCGTTTGAGGGGATTGTGACTTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACGGTGCAAGCACTTATTCACTTTATGACAACCCAATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGACAACTTTACCACAGTTCCTTCGGGAAGCTCACCACGGAACACATTGAAATAAACTTGACCCGTTTGAGGGGATGCCTCT

>NC_020449|16|2|992831-997304|PILER-CR
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GTAAATACTAATCCTATCAGTTTCATTTTTCCTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AGGAATAGTCATTTTTCCACGAAGCACTACTGCGAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTAGATTGTGCATTGAATCGAAGGCACCATCCTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAAAATATGGACAAGAACGATAATCGTGATAACAGATAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAACCTATTTTCTGTACCTGTTGAATGAGCACATTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATGATTATGATTAACAAAACTACGGTTATGAATAGATAC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CATCCACAAGCCATTTACATAGCCACATACGAATGCTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CACATCAACTTCATAACGAAGCTAATGCGTTCGTTATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTACTTTTTGGTTTTTTCTGTAAATCGCGACATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CTATTCGTACCCTATCATCACACGGATCATACCGGAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AATAGATAAGGTTTCCCATTTTCAGACATAATGGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGAAAACACTGGCACAGGATCAGCTCCAAAACTGATGATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAAAACACTGGCACAGGATCAGCTCCAAAACTGATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GCTATAATCGGCTTCTGCAATATATATATTTACTCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAATTCATCGCATAGTTCTACATATTTTTCCACCACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	ACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCACAACTTTCTATTTCCGGATGGTAGAATTCACAGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTT
ATTGAAATAAATTTGACCCGTTTGAGGGGATTGTGAC	TTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GGTGCAAGCACTTATTCACTTTATGACAACCCA


>NC_020449|16|14|992831-998746|CRISPRCasFinder
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GTAAATACTAATCCTATCAGTTTCATTTTTCCTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AGGAATAGTCATTTTTCCACGAAGCACTACTGCGAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTAGATTGTGCATTGAATCGAAGGCACCATCCTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAAAATATGGACAAGAACGATAATCGTGATAACAGATAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAACCTATTTTCTGTACCTGTTGAATGAGCACATTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATGATTATGATTAACAAAACTACGGTTATGAATAGATAC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CATCCACAAGCCATTTACATAGCCACATACGAATGCTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CACATCAACTTCATAACGAAGCTAATGCGTTCGTTATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTACTTTTTGGTTTTTTCTGTAAATCGCGACATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CTATTCGTACCCTATCATCACACGGATCATACCGGAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AATAGATAAGGTTTCCCATTTTCAGACATAATGGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAAAACACTGGCACAGGATCAGCTCCAAAACTGATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAAAACACTGGCACAGGATCAGCTCCAAAACTGATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GCTATAATCGGCTTCTGCAATATATATATTTACTCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAATTCATCGCATAGTTCTACATATTTTTCCACCACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	ACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCACAACTTTCTATTTCCGGATGGTAGAATTCACAGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTT
ATTGAAATAAATTTGACCCGTTTGAGGGGATTGTGAC	TTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GGTGCAAGCACTTATTCACTTTATGACAACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AACTTTACCACAGTTCCTTCGGGAAGCTCACCACGGAACAC
ATTGAAATAAACTTGACCCGTTTGAGGGGATGCCTCT

>NC_020449|16|2|992831-998742|CRT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGTAAATACTAATCCTATCAGTTTCATTTTTCCTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAGGAATAGTCATTTTTCCACGAAGCACTACTGCGAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTTAGATTGTGCATTGAATCGAAGGCACCATCCTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCAAAATATGGACAAGAACGATAATCGTGATAACAGATAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACCAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGATCGCTCTGAACCCAGATTTCAGCCTTCACATATGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACCGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCAACCTATTTTCTGTACCTGTTGAATGAGCACATTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATGATTATGATTAACAAAACTACGGTTATGAATAGATAC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACCATCCACAAGCCATTTACATAGCCACATACGAATGCTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACCACATCAACTTCATAACGAAGCTAATGCGTTCGTTATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACCCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACATTACTTTTTGGTTTTTTCTGTAAATCGCGACATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACCTATTCGTACCCTATCATCACACGGATCATACCGGAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACAATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACCCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACAATAGATAAGGTTTCCCATTTTCAGACATAATGGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACGCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACGAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACGAAAACACTGGCACAGGATCAGCTCCAAAACTGATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACCTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACGAAAACACTGGCACAGGATCAGCTCCAAAACTGATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACCTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACCGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACTTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACAAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACGCTATAATCGGCTTCTGCAATATATATATTTACTCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACGAATTCATCGCATAGTTCTACATATTTTTCCACCACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	AGACACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACCAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCACAACTTTCTATTTCCGGATGGTAGAATTCACAGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACTCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTT
ATTGAAATAAATTTGACCCGTTTGAGGGGATTG	TGACTTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACGGTGCAAGCACTTATTCACTTTATGACAACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTG	TGACAACTTTACCACAGTTCCTTCGGGAAGCTCACCACGGAACAC
ATTGAAATAAACTTGACCCGTTTGAGGGGATGC

>NC_020449|16|3|997341-998668|PILER-CR
	ATAAAGGTTCATCTTCATCAGCAGTGTCAGAATCAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAGCTACATCAGGAGGAAGCATTCCCTGATGTAGGTTATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTCCGGGCTTTTTCCGAGTCAGGAACAATATTATCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TAAAGTCCCAGTCTGAAGATAATATTGTGTTTATAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GTAAATACTAATCCTATCAGTTTCATTTTTCCTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AGGAATAGTCATTTTTCCACGAAGCACTACTGCGAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAAAAAGCACTCCAAACAGCTTGGAGAGGTTTTGTTTTGAGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTAGATTGTGCATTGAATCGAAGGCACCATCCTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TATCCCCAATTATCTTTGTTTTCACCAAAGATTCTGGAAATTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GTGAACGCTTTTTTGGTCAAGCAAGGTGTTTTTAA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTAAAGCTTTAAACACTTTGAATTTGTTAGCTAAATCCATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTTTTGTTGTAGAAATATTCGAAAGCTTCATAGTCTTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GACCACGAATTGCCCCGATATTTCGTTTTAGCAATACGATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAAAATATGGACAAGAACGATAATCGTGATAACAGATAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TATATTTCGGAGATTGACTTCTTATCTACCTCGTATTTTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAACACGATGAACAATACCATCCCGATGGCGGTTAATATTTGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATGGAAGTGAAGCCTATGGGTTCATAGATTGCCCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTAGGATACATAGCGGAAAAAACTGGCACAGGATCTGCG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CAATTGAGGCTCCTCATCCCGGTTCATGGTTCTGTACAATCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGACCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GATCGCTCTGAACCCAGATTTCAGCCTTCACATATGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CGTCTTCCTGGTAATACGAGATCACCAGGAAGGGCTTTCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATTGACTCAGCAACAAGCTCGCCATTGGCTTTGGTTGCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ACTTCTGCCAAATCTTTAGCAGAGCCAAAAAGCGTCCTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AAGATCTTTGGGGTCATCTCTTGCTCAATGTCAAAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTCGAACTGGGAAATAACCGTTACTTCTAATAAGTTCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AATGACCTCAGTTTTTCTTGTTCAGGAAATACCCACTTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTGGTTCACGGCTGCTTCGTACCATTGAGCTTGTGCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTAATCTTCCTTCCAGATATCGCACTGGAAGGTTGGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCTCTGTATCTCTTATACAGAGAATTCCCGAATCATCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAACCTATTTTCTGTACCTGTTGAATGAGCACATTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATGATTATGATTAACAAAACTACGGTTATGAATAGATAC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAAAATTGACCGTTAATACACGCTTTTAAGCTAACGCTGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCAACTAAACCACAAACGAATGCTGGAAACGCCCATCCT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ACTTACCCAAATTTCAGCTCTAACAAATGAACCAAATTTTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTCTGTACCGAAGAAATACTACTTCTCTTCACAGCGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TCAATTACTTTTTTTTCAACTTCTTTCTTTGTCATTTTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TATTGATAGATTTATCCCTCAATGCTTGAAGGAATTTTTCTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CATCCACAAGCCATTTACATAGCCACATACGAATGCTGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CACATCAACTTCATAACGAAGCTAATGCGTTCGTTATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CCTCTCTTCTTCTTCACCTCACACCGGGGGGAGACATTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GGAAATGGCTTCTGCTAATACAGAGGCAGACCCGAAAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TGAACTGGAAAATATCCAAAAGATCTAATGATCCCTTCTGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTGGCTTCTTCAATAGTGATTGCCCGCATTTCGGAATT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	ATTACTTTTTGGTTTTTTCTGTAAATCGCGACATA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CTATTCGTACCCTATCATCACACGGATCATACCGGAAG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCTTTTCTGAATTATACAGGTTTTTCCATCCCCTAAATGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TTAAACTGTTGTTTCAGTGGAACTAATCCACTGGCCTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AATATTCTTCTTATTCGGGTTAATTTTTCAATTACTTTTTC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CCAATTCTGCGCCTTTTCGCTCACCGCCCAAAATCCAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TACCACAAGTTCCATAATGATGTACTCCTCCCTCTTCAGCCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AATAGATAAGGTTTCCCATTTTCAGACATAATGGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GCATTTGAAAGGCAAGGGTCAGAAAAACGGAGCCATTGTCGGTTTG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAGTGCTGTGGAGATTGTCCGGAATAATCTCAACCAAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TAAAAGAAACGGTTTCTTTCCAGCAGCCATATCTGGCATC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGACGAAAACACTGGCACAGGATCAGCTCCAAAACTGATGATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAAAACACTGGCACAGGATCAGCTCCAAAACTGATG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CTCCCAGAACTCCTGACGGGTACTGTTGTACCCGTCCAGGATACTCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	CGAAAATATTAAAAGAAACGGCTTCCCATTTTCAGCC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TCAAACCGGAAGTGGTTTCCCGGAAAAGCAAAAGATATGC
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TTCTCGTATTATTTCTTTTAATTCTTCTTTTTTCATTTTTT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	TTGCCTCAGATAGGGTTATCATCCTCATTTCGCTGTA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	AAAAAAAAGGCAAATTTGATAATTCCTGAATTATATCAGGA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GCTATAATCGGCTTCTGCAATATATATATTTACTCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	GAATTCATCGCATAGTTCTACATATTTTTCCACCACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	ACTTGATAGTGGTCTGATGTAAATTGAATACATCTTTAT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	AGCACCTCCCAGAGGATGTAGATAAATGAGGCAATCGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	CAATTGCCAACTTCTTCACCTCTCTGTCCTGAAGG
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCACAACTTTCTATTTCCGGATGGTAGAATTCACAGT
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	TCCCTAACCCAACCAAGCCCGCTAAGGTCGATATCTGGCTT
ATTGAAATAAATTTGACCCGTTTGAGGGGATTGTGAC	TTCGCCGAACTCTCCAGTTCTATAAGCTCTAATCGCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC	GGTGCAAGCACTTATTCACTTTATGACAACCCA
ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_157860002.1\|1011099_1011345_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424599.1\|1000031_1001222_+\|poly-gamma-glutamate-synthase-PgsB	unknown	unknown	gnl\|CDD\|188527
NC_020449.1\|WP_015424606.1\|1007331_1010280_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|378215
NC_020449.1\|WP_015424597.1\|992570_992819_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278918.1\|1010355_1011024_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424603.1\|1003644_1004796_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279215.1\|992096_992387_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_020449.1\|WP_015424601.1\|1001676_1002801_+\|poly-gamma-glutamate-system-protein	unknown	unknown	gnl\|CDD\|275133
NC_020449.1\|WP_015424585.1\|980490_981582_+\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_020449.1\|WP_015424602.1\|1002813_1003635_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424593.1\|989551_990913_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424587.1\|983645_985166_-\|SAVED-domain-containing-protein	unknown	unknown	gnl\|CDD\|380122
NC_020449.1\|WP_015424592.1\|987649_989542_+\|hypothetical-protein	PrimPol	COG4951_PrimPol_CAS-I:CAS-III	gnl\|CDD\|227287
NC_020449.1\|WP_015424594.1\|990912_991947_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_020449.1\|WP_015424588.1\|985440_986340_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278915.1\|986356_987169_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_052293587.1\|1001230_1001674_+\|poly-gamma-glutamate-biosynthesis-protein-PgsC	unknown	unknown	gnl\|CDD\|379469
NC_020449.1\|WP_044278917.1\|1004811_1005144_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424586.1\|981573_983637_-\|putative-Adenosine-deaminase	csx1	cd09741_csx1_CAS-III	gnl\|CDD\|238645
NC_020449.1\|WP_015424605.1\|1005146_1006154_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424587.1\|983645_985166_-\|SAVED-domain-containing-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	1.00461e-15
NC_020449.1\|WP_015424599.1\|1000031_1001222_+\|poly-gamma-glutamate-synthase-PgsB	gnl\|CDD\|188527	TIGR04012, poly_gGlu_PgsB, poly-gamma-glutamate synthase PgsB/CapB. Of four genes commonly found to be involved in biosynthesis and export of poly-gamma-glutamate, pgsB(capB) and pgsC(capC) are found to be involved in the synthesis per se. Members of this family are designated PgsB, a nomeclature that covers both cases in which the poly-gamma-glutamate is secreted and those in which it is retained to form capsular material.PgsB has been shown to have poly-gamma-glutamate activity by itself but is bound tightly by PgsC (TIGR04011). [Cell envelope, Other].	5.82979e-132
NC_020449.1\|WP_015424592.1\|987649_989542_+\|hypothetical-protein	gnl\|CDD\|227287	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown].	6.88363e-13
NC_020449.1\|WP_015424594.1\|990912_991947_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.39053e-98
NC_020449.1\|WP_044279215.1\|992096_992387_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.34767e-24
NC_020449.1\|WP_015424601.1\|1001676_1002801_+\|poly-gamma-glutamate-system-protein	gnl\|CDD\|275133	TIGR04332, hypothetical_protein, poly-gamma-glutamate system protein. Poly(gamma-glutamic acid), or PGA, is an extracellular structural polymer found in Bacillus subtilis and a number of other species. PGA is sometimes capsule-forming, sometimes secretory, and may be produced by Gram-positive (single plasma membrane) and Gram-negative (inner and outer membranes), so export and/or attachment machinery may differ from system to system. Members of this family occur in a subset of PGA operons, in lineages that include Francisella, Leptospira, Treponema, Thermotoga, Fusobacterium, and Clostridium, among others. Because gene symbols pgsWXYZ are not yet in use, we suggest pgsW, as one of a series of poly-gamma-glutamate synthesis auxiliary proteins.	2.0169e-135
NC_020449.1\|WP_015424586.1\|981573_983637_-\|putative-Adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	1.52094e-60
NC_020449.1\|WP_052293587.1\|1001230_1001674_+\|poly-gamma-glutamate-biosynthesis-protein-PgsC	gnl\|CDD\|379469	pfam14102, Caps_synth_CapC, Capsule biosynthesis CapC. This family of proteins play a role in capsule biosynthesis. They are essential for gamma-polyglutamic acid (PGA) production.	1.3463e-30
NC_020449.1\|WP_015424606.1\|1007331_1010280_+\|CapA-family-protein	gnl\|CDD\|378215	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	1.02157e-62
NC_020449.1\|WP_015424585.1\|980490_981582_+\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.86754e-34
NC_020449.1\|WP_015424605.1\|1005146_1006154_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	2.7637e-156

>NC_020449.1|WP_015424597.1|992570_992819_+|hypothetical-protein
MIIYVCPKNNYKRTAIACSLCNFAKLLYYNIVTSSIHKIIVPNTITCYIYNYTKYASIPHTPNHKSISHCHFDNDEYFMLNA
>NC_020449.1|WP_044279215.1|992096_992387_+|CRISPR-associated-endonuclease-Cas2
MSLNKHLYVVAFDIVSDKIRYRCVKILLSYGQRVQKSVFECILNDKQFLDMKSKLDNTINPEIDSIRYYLLCANCEKNISVSGIGLYSYFEDLIIV
>NC_020449.1|WP_015424594.1|990912_991947_+|CRISPR-associated-endonuclease-Cas1
MPVVYIADQGSHICKKGDRLYVYRGNQLLRWFHTKDIIQLILVGNIGLTSQVVTYLLKNRIDTVFLSYYGKFKGRLVGEFGKNVMLRVNQFQYLNEPENRVYLANLIIRGKIENSLLHLAKRKKRNKAESLTFAYIKNKALLAQLKTQILPKDILLGYEGIAAKNYFAAFPDLIANPDFPFSGRNKRPPKDEVNAMLSLSYTFLMNQVMCAAYICGLDPYYGALHDLDYGRQSLVLDIMEEFRPLIDNMVISLINRKEIRLEHFLYNTLPDDENSDLDNSTLPVSLTKNGMKIIITAFSKLINSKFNYNQLSEQWILKDIITLQIRKLAAHFDNKKEYSPFLWL
>NC_020449.1|WP_015424593.1|989551_990913_+|hypothetical-protein
MNQKSEIVNNAWNLMKQGNYKDALPILETSLNEDLSQNYFLASLLLDCYNKLGLYQKAIALGEELCSKENCWASIKQSYAWSLYFAYFKNSATLSPEEAIPILDKMALITDCNKKVNPLSLSIFSYLSQNKQITPELTIQLLDMLKFDLLDDKPVQLKKNGKTLASPKERFICYYTKALYMEKNYSRCIACCKRALELSSNSKRQTTFNDAQNKATTNADSNQAALFISSDNLIWIKRRLALSLYYLGEYEQAEEIMKQIIKKKKDWFLFHELSQIVYKKNEPEKALSYAAMASSAIGDAEMKIHLWDFLYQLLVETKNYPQAVKILSLAAAIRFQKGWNISPSQKQELAKYNLIPEKLPPFKDILNELKPWFAEISYAENERLTGYIANLLPHKKAGFINSGNKSFYFKVSACLFNPEYIVPDTKVSFIAESSYDPKKQKDSVIAVNIKRIE
>NC_020449.1|WP_015424592.1|987649_989542_+|hypothetical-protein
MILDNITNLGSKEIKFSENEFHSFRVRFNNLFIKEDIETAHNLALNMLPVENLQSSELVELARCFQLLGDKDNTLACLEKAIQIDSHNKNAKMLKLELLDSLEQKEQYLDFLQQCLESDPQEKQYYLLLHSYYTENGQNELAENIFSLALSYGIDLEPPNPDIEISVADSLVEPECIDDPILINSYLTLFAGRENCHSRQWVSDKGKTGYTPVMEPLNPVLIRNHLQGIQTLGVYQLTLNNQVKWIVFDIDIINDYLDDLHDPHFREWIDNGFLQVLSNFDNILQTFHLKAVYEYSGYKGYHIWLFLQEVTSAAIARSFALKLASQIDLSSFPLKIEVFPKQTRTSANNFGSLIKLPGGIHRFSGLKSNFFNLKDGVLEPLPLTMLLKQPPLISPADFMSALCSLQPDFSFGKTDYALNEEQTNKIEVPLLGSNTPPELDPQWLWLKQHCSALAFICQEIETHHLLNKEQKKVLIHCVGHLERGPDIVNYYLRKCSNCEPSDLLKSPLKSNVISCNKIRNYLNCNGLDYDCFCDFTAKMSSYDHPLVHLEDFSPANYSPSGNNELMLKETIYKYLDIKRRNNELSGTLQQLEKQILELFEHIGVEEFITPYGILKKITSENSVKLILKLN
>NC_020449.1|WP_044278915.1|986356_987169_-|hypothetical-protein
MEKKNTFNQGYQKWRNDGENDKDIISLENALWTVLKQPNLLSSDKKLQYQIFTLIRMFLGKRPVQFKLLKDLCLKASLDEGEMYYCLMGKIIEKMLPQVDKLKKKEKELGKEEDFGKYLYKTAENITKHCVEEFINELMEDKINHILREEYYGNYNNKQFIDLPYIQYDIVNRYKAKLLVIIINEEWDKREINVLCHELEEPSKGGTKRLRDESRDNIYKLHERIRKKFKQTLENNNFDDNVGRLFIYNFLKKICQSCPPYPTYKKEKGE
>NC_020449.1|WP_015424588.1|985440_986340_-|hypothetical-protein
MNEKDKELLYQAYLEGIKKETKTPPIELEDRELFLPEDAEFSFPEPKQYPDQLPGSIIMLENNDYLICCLIIDEMGKDRYLAYKLSPYTVFASEFDILFATDSGKYILETDNYFYITEQEIEEAIEMDFIERKNLEKLKLELKKEHPINKNINTDLESPENKFRIMEHNITLELRCRQSNPLIWIPQIELQYKRKPEDTLQLAAADKHIAQFALGIISPDMKKLNDYAYFAENYTLQKDECHNLLLLPDENLIDKKAEIRCGNIIVFKGKLPKQIVLANFVPFFPKQAQDLLDIKLKVL
>NC_020449.1|WP_015424587.1|983645_985166_-|SAVED-domain-containing-protein
MPKFNETADKYLKSGSAEAELIILQYIQQDRVSEDDEEWVYNLLEKANNPYIKLNALLWLSAKRKYLTQLSKLWGISENELKSLSQQQPKIGLFPAVDSRKNAFLAKVFVYKLKSEEPIALAILGDKIENFSYLAQLGKQNCLIGFNKNIQGNSWQLAVLATLLVKDEKIISKIAYSGIVLPSGEIITAEEIEYKKRCCQNLVHRIKKIEQLDAWLNTETIPLPVIQYQGEENELKRWQKAMEQKVQEKFSWFSYELLEDFYGITNSDLAIFGNGILPFEANAWQKLLQEQVKDKFKLLEDKVMPKKVLWFYAGQISTLQLGIGALFGFKRAVSILQMEFSNTTYHEVFILYGKENARQLKNVSVKKEDYQYIQSELLINEPHKNELGFIIYLGSHNPIGEAKAYCQKQLQINNFLIIQARENQGVMETSQNWLPYLQEINSALNTARQEYHWERIHLFQTAPTALCMALGIAVGHFLPVDVYHYQFNAEEPKYRCVFSLDKMLNL
>NC_020449.1|WP_015424586.1|981573_983637_-|putative-Adenosine-deaminase
MSQLIVSMGKTSHLIAEVVGFLNYQQYPLYCNHKNFEALQAEIDENQLKPVTSITMICTEDSFTTSKQEVENWLTAQNLNIELQFHKLNQLTDILSQNDARMMRNLIYSIVYKVYKTGNTQDLYLCLSGGRKTMSSDIQQAAYLFGCKAMIHILAEGMVNFDLETTPENIAYQEINKITPVLYNKDIPAGKLAELMEDNEVKLPKAEITDNIYSYNDEDTSFLDLVEKLQAQQDNLTINYYNKLRYSEPASNFQILHLLNPDKINELKKKYINGIDNSKQDLRWLYNLPKTDLHCHLGGFADTKGLIKIATANAKYLGNSLKEKELEREITASIQKKNLNELRATWKAINMQENNLRCLDSSLYLLCFENNENLLEQVIWGDMLQEENFIAIGLNRYEEIGDFQGSTLLQTEEALREICKQLKDDAKKNNLLYKELRCSPCNYTNNLKATEVVEILYDELKDAECVFRLIIIGSRHKSPKILNEHINLCKELKGQNGKISDFICGFDLAGPEMGETISLREKILPLLEDCLRITIHSGETTSVKNMWNTVYNLNADRIGHGLYLQDDENLMEKLKDKRTAIELCPSSNFQIKGYRDYSINSTSKMCIYPLKQYLQKGIKVCICSDDPGISRTDISKEYLKAAKMTEGGLSKWEILTLIRNSFVSSFQNKEQKQELIKKAEQKIMQLV
>NC_020449.1|WP_015424585.1|980490_981582_+|putative-CRISPR-associated-protein
MNSIILSPVGTSIFTKGKFPPEINKFSNCKKLEEIPSDQREEISSYIQEVKELLLSSSMEDVKKRSAELNGIIRYYNDNLRNAAKDIHYLLPSDTYIGRSACEIVKSFLQNYVKDVRIMEIKDLQTYDCEGFQYALSDLVSQIMTIKEGLLSEQKLIFNLTGGFKSILCFLQSLGMFYADETVYVFEFSDSLLRIPALPVKLVPDDYLKEYITVFRRLHNGLSVTEEEYNKIPESLILKLYGEPTLSAYGKIVWDNFRKDLYSEKLLDSISPKVKYSESFWKSTKDLEKDRFYNLNMRIDEVSCFMEKENKPNPASLDLKKLEIPKGISTHEFDAWADKDAKRVFCHFEQDTMVLDILLEGLH
>NC_020449.1|WP_015424599.1|1000031_1001222_+|poly-gamma-glutamate-synthase-PgsB
MTVLIIVTLILITHWIIEYQRHTKNVLSIPIRIHINGTRGKSSVTRLIAAGLREGGKVTVAKTTGTLPRVILPDGREAAILRLMGANIIEQKYIFRHAVKHKPDAIVIECMAVNPVLQWITERKFIRSTISVITNCREDHLDLMGSTVQSVTMCISNTIPKKGICYTAEEEQYPLLEKVAKSRQCQIHKIRPVDVTEEELNKFRYIEHSENVQLSLAVCAAAGVPRDVALRGMQKATPDPGALKKYPIKDRGKTIIFYNVFAANDPQSTVEIIQMVTGNLQNIEKIIILNSRADRLFRSHQLVDAIKPLDFSYLLLTGEIPDKIENYAIQAGIPKEKIFPLGEPLPEVIYQKVWELTKDESHILGIGNIAGTIKYGAQIVAHFRHKMKECNERSRM
>NC_020449.1|WP_052293587.1|1001230_1001674_+|poly-gamma-glutamate-biosynthesis-protein-PgsC
MVQAAVGMGVIISLMFSELLGASAGGIVVPGYIALYLDRPLQILGTLVISLLTWAIIRIIGNFTLLFGKRRMVLSILIGFILGWLSRILVVQDITIHQLQMQSIGYIIPGLIANWFERQGFWKTVSSMGIAAIVVRLALMVIFNGEL
>NC_020449.1|WP_015424601.1|1001676_1002801_+|poly-gamma-glutamate-system-protein
MMYRPSLKSNRSLIILLLLAIVLFYIAQTSYVNVKTDNYEIKIAAAQLMKSAIDSLSAEINKRGIEIDPIDDPLQTGLIGMRLSSITTDRGLLSEKRAAINPNLAAVFVEELSKMKLMPGDYIAVGITGSNPAVNIALYSAIQVMELNPKIIVALSSASYGANRPELTWLDMESILKEKGLFDFGSSYASFGGKDDLAIGLSDNGIKALREAMQRNNIPLLIGNDLEDNIAIRMAAYEELLLEGKRYKAFVNIGAGLANVGSEPNANLIPEGINRSLAEHNYEKEGVIIKMAKNNVPVLHFRRILRWAKRYNLPTYFDTMPKVGEGKMFGSRIHNQTVNIICLTILLIAIVIVIIFDRHDRRFMANIVDPDEEL
>NC_020449.1|WP_015424602.1|1002813_1003635_+|hypothetical-protein
MHKHFISVLLIILGINLLLAQTANRYKVLPFDNPGTKLLLKTEAGNYYYYRGLPERPLILNTTGVEKIELRSFSKEAVRKPEIVIVINKQRKTYPLSFKEKKGNYYLYQPLMIDIPENTKDIQIICYNRSIYLRAFSVLPPKPPKAVKQPNIAIKAHSGTVSLQHNGSNSDYYTFMPNQPFKFTLNNGRNAYVYVRPRLLDRSLPKIGLYANGELVEVIDFTLKRTTKYHCQGISSLGIAQKIVLPANEKSTDYELRALSDHLFLAKPILMKK
>NC_020449.1|WP_015424603.1|1003644_1004796_+|hypothetical-protein
MVDTNPKIFPQETKPIAELKEKETIASLDSLSPKQTKENKTIKKSKIRRKNSIRPIILLLTFFLFFGFSRVEAQINGSVKIGAVYSDNVFHLSEYDIDRFDDHHPNLNFVDTIDDLTLNTRIELKYPLSYRWWKFTPSVSGNFSQNISNEDKYRTDWTLKFKVDRYYWNCSVQYTSNPYIYFRHFVDTDGTGELEKYSYSRDTYRGDLAVKPLPKTTVKANLRYELYRYNKYFTEADGKAITGEAGVSYKFPFFTVEGSYGYRDFSCDKRIANKDCSYQSNIYKGALTLPKMPLSEKGKTLIQPSFALNYEQRFYQGSGSWYGGRADYTYSLMAGMELFFSPKMNLSLDYSHYFRNVETDNETVQRLKEYSENRLSAVFSYKF
>NC_020449.1|WP_044278917.1|1004811_1005144_+|hypothetical-protein
MVFKKENDLRKIKEFLTLVENPKVELRHYKKPVLVWAVDEGTVFYSFWEEEMLTRFGLENVDGWDFQEDLLFCPDWIGDTEEEDLEDFDLDDEDIEELSHFLHRNMDDKD
>NC_020449.1|WP_015424605.1|1005146_1006154_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MRIATLGGGGWGLALSSLLSENGHQILVWEYNPEYLILLKETHSNPHLLPNITLPEEICFTNDFQEIVAFSPEIIILATPSQFLRSTLQKTPVSLWNRPELLAVVNVAKGIEENTLKTLDAVIKDELPFLEEQKICALSGPSHAEEVARKIPTTVVIAGSDEDLLCYLQTVFSNSYFRVYRNLDLIGVEIGGAVKNIIAIAAGIIYGLDFGDNTIGALLTRGIVEIQRLGIALKALPETFLGLSGIGDLITTATSLHSRNRFVGVEIGKGRKLSDILAQMEMVAEGVTTTRSVYLLSRKLRIEMPIVEKVYQVLYEDKEPRKAILELMTRELKAE
>NC_020449.1|WP_015424606.1|1007331_1010280_+|CapA-family-protein
MLQKFLMSIVILMCVYSSLSALRYTTLEDFESGFVSLSSWSIEEDLQPDAWSLDTSTPDSSSYCLKLTGNCYKLQQITPYAIDSTGVIQVQVKTSSNPRIQGIGFTDGVHNILYSFAGSRILDIEVWIPVYQGAFSNGVWNTFQLPLALDWQAFWGYLPVINGIIYINDLDGISSRSVWFDNIIDISSDLPVPPIVSISTSYPVKNTAVYFYSNVIDPDSDTFTYEWSFGDSTFSNLPNPYHLYTIASAYPYTVTLKVTDDTGKVGFASTEVTLETGASDLPVTLNFVGDIMLARRYENPGGIIPTLGVNAIFSPTKPYFGDAADISVANLEVVLANVGVHHPTKSVYYRGNPANVNGLVYAGIDVVSTANNHTMDYGIEAYQQMQGLLNNSEIKYSGCGANSYEAYLPTFYHCRGLNIAFLRSSDRTGQYNNAQPFLQAGYNKPGFAYMTPYYVEQQLQAVEGIADLKIVEMHGGSEYSIAPGAGYGKEFNPFLEDTEDEDYFYRNDVPHQWDIEIRHSAIESGADLVIVHHPHIIQGLELYQNKLIAHSLGNFVFDLDYPETMPTMILYADAYFDGFRNFRIKPFYIDQYIPKPATGQLAVYILDYIASRSMDFNTRVMVDKENLEARVLMEDENPSVTTNAFSSWQHLLFHSGGMSYTSPIKLPRRGSISNIINVEPPAEYQFRLGQEHIWFGNFENEGSTLWVPPDYSTTDFIDGERSAKLTTTGAGSVTSTISQRCKIYDNTKKYTLHGWLKTENVALANISIRFYTSRTAAVASYTDYVTENIIGTNDWTYYYKELNLPTDVFYYEIRLQMTGSTGMTAIALFDNVGLIEWTEWTTTEDLINIPWPNNYYWIQARTAETPKSMSFSLVESNFGVQRANASNHFSKMKPELNISPNPFNPETIIYCVLPVSGKTTIKIYNIKGQLVKELYKGELEAGIHRFNWDAKDIDNRSVGSGVYFIYMENGKSKVIRKAVLMK
>NC_020449.1|WP_044278918.1|1010355_1011024_+|hypothetical-protein
MRKFLLTLVLLVLAFCLMAEEADTPKINFALLNPKEINLELRVYAPMQRVYITADFSVEKDSLPDAVYHSLFLTKDARIEYFLINDKFVPPVYSTKLVPEHFNPVFPYPEMLNEESNLNCFSFYLPNYEGKIKFTLRYSIPIPEWVKESDIRGYVTFSSAQNWYPRNLTGPCKVYARLISSTYYTMELGTQCTIKEKDDIRITEGYFIDSPAEQSIFKIIKG
>NC_020449.1|WP_157860002.1|1011099_1011345_-|hypothetical-protein
MPPSTSLCRPQGLFLQGKGKKKKIGAFISTRGLRHHRYPCVALRAFMEAQPSQPSKPYKPDKPSQPDKPSQPSQPSHYFSL

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Crispr_ID: NC_020449_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_17

1094500-1094613

Orphan

Consensus_repeat	Method
AGTTCCGTAGGAACGACAGATATTAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_17

>merge|NC_020449|17|1094500-1094613|CRISPRCasFinder
AGTTCCGTAGGAACGACAGATATTAACAACGGGTTTTGAACCCGGTGATGAGAATAAAAAAAATACATATCTCTTTTTTTAAGAATGAGTTCCGTAGGAACGACAGATACTAAC

>NC_020449|17|15|1094500-1094613|CRISPRCasFinder
AGTTCCGTAGGAACGACAGATATTAAC	AACGGGTTTTGAACCCGGTGATGAGAATAAAAAAAATACATATCTCTTTTTTTAAGAATG
AGTTCCGTAGGAACGACAGATACTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424678.1\|1099896_1100364_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_020449.1\|WP_015424664.1\|1084348_1084618_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586
NC_020449.1\|WP_015424679.1\|1100360_1102058_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|379299
NC_020449.1\|WP_015424667.1\|1086884_1090217_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|350769
NC_020449.1\|WP_044278926.1\|1102054_1104661_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_020449.1\|WP_015424668.1\|1090227_1093983_+\|Eco57I-restriction-modification-methylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369456
NC_020449.1\|WP_020268708.1\|1098314_1098926_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424672.1\|1096604_1097270_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424677.1\|1099433_1099775_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213239
NC_020449.1\|WP_015424662.1\|1080933_1081686_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_020449.1\|WP_044278923.1\|1079849_1080449_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NC_020449.1\|WP_015424674.1\|1097812_1098280_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|377783
NC_020449.1\|WP_015424661.1\|1080445_1080925_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|340813
NC_020449.1\|WP_015424676.1\|1098909_1099434_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424670.1\|1095031_1096351_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NC_020449.1\|WP_044278925.1\|1096337_1096589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379341
NC_020449.1\|WP_015424666.1\|1085345_1086638_+\|DUF2851-family-protein	unknown	unknown	gnl\|CDD\|378539
NC_020449.1\|WP_015424663.1\|1081999_1084057_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NC_020449.1\|WP_052293577.1\|1084674_1085346_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NC_020449.1\|WP_015424659.1\|1078536_1079853_-\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|237857

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424678.1\|1099896_1100364_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.18961e-54
NC_020449.1\|WP_015424664.1\|1084348_1084618_+\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	1.57735e-18
NC_020449.1\|WP_015424679.1\|1100360_1102058_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|379299	pfam13623, SurA_N_2, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	7.09595e-12
NC_020449.1\|WP_015424667.1\|1086884_1090217_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.589e-38
NC_020449.1\|WP_015424668.1\|1090227_1093983_+\|Eco57I-restriction-modification-methylase-domain-containing-protein	gnl\|CDD\|369456	pfam07669, Eco57I, Eco57I restriction-modification methylase. homologs of the Escherichia coli Eco57I restriction-modification methylase are found in several phylogenetically diverse bacteria. The structure of TaqI has been solved.	2.93564e-15
NC_020449.1\|WP_044278926.1\|1102054_1104661_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_020449.1\|WP_015424677.1\|1099433_1099775_-\|hypothetical-protein	gnl\|CDD\|213239	cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins. The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).	0.000154307
NC_020449.1\|WP_015424662.1\|1080933_1081686_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	3.08508e-151
NC_020449.1\|WP_044278923.1\|1079849_1080449_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	1.7445e-63
NC_020449.1\|WP_015424674.1\|1097812_1098280_-\|ECF-transporter-S-component	gnl\|CDD\|377783	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component. This family is the substrate-binding component (S component) of the energy coupling-factor (ECF)-type riboflavin transporter. It is a transmembrane protein which binds riboflavin, and is responsible for riboflavin-uptake by cells.	1.34776e-14
NC_020449.1\|WP_015424661.1\|1080445_1080925_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|340813	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC. Crossover junction endodeoxyribonuclease RuvC is also called Holliday junction resolvase RuvC. It is part of the RuvABC pathway in Escherichia coli and other Gram-negative bacteria that is involved in processing Holliday junctions, which are formed by the reciprocal exchange of strands between two DNA duplexes. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. RuvC is thought to bind either on the open, DNA exposed face of a single RuvA tetramer, or to replace one of the two tetramers. Binding is proposed to be mediated by an unstructured loop on RuvC, which becomes structured on binding RuvA. RuvC can be bound to the complex in either orientation, therefore resolving Holliday junctions in either a horizontal or vertical manner. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the Escherichia coli HJR. RuvC and its orthologs are homodimers and display structural similarity to RNase H and Hsp70.	8.27501e-66
NC_020449.1\|WP_015424670.1\|1095031_1096351_+\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	2.81083e-43
NC_020449.1\|WP_044278925.1\|1096337_1096589_+\|hypothetical-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	1.37003e-05
NC_020449.1\|WP_015424666.1\|1085345_1086638_+\|DUF2851-family-protein	gnl\|CDD\|378539	pfam11013, DUF2851, Protein of unknown function (DUF2851). This bacterial family of proteins has no known function.	4.85499e-91
NC_020449.1\|WP_015424663.1\|1081999_1084057_-\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NC_020449.1\|WP_052293577.1\|1084674_1085346_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	3.337e-65
NC_020449.1\|WP_015424659.1\|1078536_1079853_-\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	3.46548e-144

>NC_020449.1|WP_015424668.1|1090227_1093983_+|Eco57I-restriction-modification-methylase-domain-containing-protein
MDKESIKEALSLFQKQDTYSAALKFWNTLGYLSDRQPEQHSFSYNDFAQFCGNNINAFKAKKEDWDQFHLLFQITDEEMMHYFNNNYQEFIPGNIKQEFQASNIKSYLFAALKLKGNTYNRTQLADIARQINKQYAIPLIILFHYNKFITIAVVSRRQNLKDTQRDVLEKVTMIKDIKLTEPHRAHIDILDDLSIEKLSEKYTLNSFDALHNAWSATLDIEELNKRFYKELSNWYFWAIKKVVFPAGEESNEEVRNSIGLIRLLTRLIFVWFMKEKGLIPDALFDPQKIKTIIKFEDFNDSSYYKAILQNLFFATLNTEMNKDKENSRKFRREIKSKMNPDFNVHTLFRYESLFHHPEQVIDEYFANIPFLNGGLFECLDTEITQNNNNNYIRIDGFSDRPDNVLKVPDELFFSDKEQDIDLNEFYGTTNKRYQVCGLLNILNSYKFTVTENTPIEEEVALDPELLGRVFENLLASYNPETKTTARHETGSFYTPREIVDYMVDESLIAYLLNELPHSTKAEAEDSELKLRLLLYYTDEDHLFNPEEVDKLIYAIDNLKIIDPACGSGAFLMGLLLKIVYMLHKLDPQNTKWKQQQIDNINNLIADTKRTINDPKIREESIQKLRNSIQDIEETFDQFDFDYSRKLFLIEHCIYGSDIQPIAIQIAKLRLFISLLVDQYPKQGKPNLGIRALPNLETNLVAANSLIPLELPDQMELFDNSIEKFITDIKAIHNEYFSTRERKEKLELKHKEHNLRLEFSNKLKDLNFPHQQADYIANWDPYSLNSIAPFFNPTIMFGVPYFNIVIANPPYIRQENLLYKDLLRESGYQIFNSTSDIYTYFYELAYKLLSEKGIATYITSNKWLRSKYGTKLRQFLKQNTKLQILIDFGGYQVFKSSTVDTNIILFSKEKPEPNHSFSFVNMPVNLEPESLTTYILDNKQTLQQNILQDNCWTLTDNTILNLKNKIEKAGKPLKFWDVNIFYGVKTGFNEAFIIDTPTKEKICKADPKSAEIIKPVLRGRDIHKYYYEWAGLWLIVIPCGWTNANKPNNMDAEQYVKQCYPAVYNHLKMIGDAMDNNKIKMKGKGLYSRDDQGDYWWELRQCSYYEEFKKPKIIYPNMTKYLPFAFDAKGFYPNPKCYIITGEDLLLIVLNSLFNSKIITYYIKTTFPELQGGTRELHKNKFENIPIPDGLLSNTEFVTICIQLNKNIQSFQGNFSNEDWYHKMITMIDSIAYKLYGLNEDDIKLIDKALEQ
>NC_020449.1|WP_015424667.1|1086884_1090217_+|DEAD/DEAH-box-helicase-family-protein
MNKPIQSAIRDNHQRGTVGNFISEHLSEGCSLSFVSAFFTIYAYNQLKNKLDNIQDLRFLFGEPRFISQIDPKTDKKQFQIEDDKLIIPLQNRLTQSRIAFDCANWIKEKCEIKSMVKPNFLHGKMYHIKSANGNEKAILGSSNFTVNGLGFGNSPNIELNIEVDSDRDRADLLNWFNELWNDDTGLVEDVKDEVLKYLSKLYAENSPLFIYYKTLYHIFAKFLEEQEDKGLLKEKTGFYDSEIWNTLYSFQKDAVKGAINKLEKHQGCIIADSVGLGKTYEALAIIKYYEILGYRVLLLCPKKLQNNWTVYQAQKGDILNPFKNDRFSYTVAYHTDLARTSGISKADNLHLSTFNWGAWDLVVIDESHNLRGNPQEKKENGEVIFNRAKFLLEKVIKEGVKTKVLMLSATPVNTNLKDLRNQIYYITEGEDDALKDSLGIENISNTLRYAQLQFTDWAKRSRTAKRDTKDLFLALDSSFFKLLDGLTIARSRKHILTYYSDIDKKSFPLRLKPLSEYTDIDTMQNFCSYDKVNDQIKLYKLSLFKPSNFVLPDFKHIYEVPGKVKVFSQEQREDFLVEMMKINFLKRLESSIYSYRLTLQRALAKIASLEEKIEAFETSNNEEQLDPFELETIIPEDELEGEEEEEFTVGKKLKYKLEHLDLENWKKALKKDKQQLTALYETAAKVIPGNDAKLKRLKEIIEYKLNHPINPDNKKIIIFTAFADTAVYLYENLSEYLYDQFGLYSALITGSTTCKTNFPMPTHYKNDFNSILTCFAPIAKERNKQTFLPQDKQIDIIIGTDCISEGQNLQDCDYVINYDIHWNPVRIIQRFGRIDRINGPNAQIQMHNFWPTKDLDKYIDLKYRVETRMALVDLTATGADNILSEEDIDNLVANEKKFRTKQLKRLQEEVIDLEDLEDSISLTDFTLDDFRIDLLNYLKANEVELSNAPLGLYAITPSPHNKLWLKTNNLSEEQKEIIRPGIIFCFQHFADGSEYNKLNPLQPYFLVYIRDDGTVRYHFTNVKQILEIYRLLTIGRKEAIKKLCDLFDDETNNGQNMDKYNNLLIKAIDDIKDTLNKRSYKQLQGDRNAIIPKKPQEQSFELITWLIIK
>NC_020449.1|WP_015424666.1|1085345_1086638_+|DUF2851-family-protein
MDEKFLYHIWDEGHLAPNLKTVSGKDLKVNYQGQFNTFRGPDFINAIISIDGEDLQGAVEIHKNTQDWIKHSHQEDVFYNQVILHIVLHNDSPLPFTMKENGELVEILELKNQLSDEIQKLLADIGDKNLASGSDYCDLLSAIDNDRLLSILTISGKQRFMSKVRRFNASLALSDFDQILYEGMMEAAGYDKNKFNLFQLAQSIPFAKLKEWHKEGLKSDEMSSIFLGSSGLLLKSRNRLNGELYETLSRSFESQRFYARKINVDWQLFRIRPGNHPVFRLILLSEFLYNCLQEGVLHFFLKTVELDKPNPQKRYQTFCKQFKPGQEGLLQNNTGLGITVINNIYINIYLPILYLYYQKLANTEMTESVLESYLSFKALPENYITRFMCNHINSSQVSIVNKKTLYQQGLIDIYYRFCRYHLCEECVKQT
>NC_020449.1|WP_052293577.1|1084674_1085346_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MKRRRSIWLRIIRFIVIIHLCYWVIIAFFSLLYNFVNPPVTPLMLQRYLVRGYPVHKRYYVPLEKIPKRTQNMLIAIEDANFYKHFGFEWKMVKEAYQRNKKAGKIRFGASTISNQLARTIFLTTNRSYLRKYLEIQATVIMEICMSKKRMLELYFNYVEWGKGIYGIETASRYYYGKSCTNLTRTQTMKLISILTNPLRYTPETYYKSASARQRYNLLQRYF
>NC_020449.1|WP_015424664.1|1084348_1084618_+|30S-ribosomal-protein-S20
MPQHKSPLKRMKTDKKRAARNNYVRSTIRTLSKKIHSDTTPEEKEKLLSELYSKLDKAAKKGVIHKRTASRRKSRLADYVNKAKVEKTS
>NC_020449.1|WP_015424663.1|1081999_1084057_-|elongation-factor-G
MKDNEMKKIRNLLFIGASGAGKTTLAEQIFYLTKTTNRLGRIEEGNTIMDFDPEEIAKKMSLGLSIGYVKYLDHKINILDTPGCPDFVGDAIVAIPAVENAIIVANATGGYEVGLELALEQIEERKMGKVFVVNRMDNDNADYDKTLEAIAENTDIKPVKIYLPIGKEGAFEGVVDIIKRKAIKAGKESEVPTNLVEAMEEARIHLMEAVAETDEDLLNEYLENMELPEDKLIEGLKKGILSGEISPAFLCSAGTGEGVLALLNGIINYLPSPAEANEIEVLKGNEKTTFICQPDGELLGYIFKLYADPGMGDFVYFRLFSGTLKTGMEFYIPEKDAKDKAGTMYFMLGKNRNDCNEIKAGDIGALLKLKNAKVMNSIVSLGSKISVIPVELPTPTTWQTIKAVNQADEDKIGTVLQRVIAEDPTIRYELNVETHENVLSGMGEQQLQLVLKKLKNRYKVDAILKEPRIPYKETIMASAESNYKHKKQSGGRGQYAEVYFRIKPTERGEGFKFINSIVGGVIPSNYIPAIEKGLWETMEKGIIAGYPVVDISVEVYYGSYHEVDSSEIAFKIASSMALKDAFKKAKPILLEPIHELIIIVPSEYMGDVMGDISTRRGKILGMEQHSKKQYLTAQMPLAEMYSYYPALKSFTQGRGRFIQKFSHYEKVPDDITQKVISAWQEQTNE
>NC_020449.1|WP_015424662.1|1080933_1081686_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MSGHNKWSSIKHKKGAADAKRGKVFTRLVKEIILAAKTGGGDPDMNPRLRTAINTAKENNMPKENIERAIKRGTGEIEGAAYEEVIYEGYGHNGVGIVVEVMTDNKKRSVSELRHTFSKYGGNLAETGSVAWNFEQKGFFNVPSAGLDEDEFMLKALEAGADDVELNEDNFDVYTSPTDFHIVIGNLEKEGYPIHNAELTRVPKNTIAVDDDTAEKLMRLIESLEELDDVQKVYANFEVSDEVMEKLSQA
>NC_020449.1|WP_015424661.1|1080445_1080925_-|crossover-junction-endodeoxyribonuclease-RuvC
MIIIGFDPGSRYCGYGLLQIESRKVLAAGCDVIDVTRGKTLALRLKSLYENIMQILEEYHPEIAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASKQQVRYMINQLYPLKESPKRDDAFDALAVATCHYNRMKWLQ
>NC_020449.1|WP_044278923.1|1079849_1080449_-|Holliday-junction-branch-migration-protein-RuvA
MIQYISGTLTFKTPVLAIIETMGIGWELKIPISTYEKLPTAGKPCKLLTYLHISQDDIRIFGFATEAERELFVMLNKVGGIGPKIALSILSTLSIPTFIKAVNSGEEGLLTRVPGIGKKSAQRLIVELKDDVHKLLNHIDQKELQIGDVSSEVESALLSLGFNLHQIRKELALMDESMQKLNTEELIKEIIKRIYQRNK
>NC_020449.1|WP_015424659.1|1078536_1079853_-|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MNFRSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDYILQQYVDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVNAVLRNYLRNPEVSYPNEPALRIAYEHSFPPELIKQWLDLWGEENTEYLAMFFNENPELHIRVNSTATTPEKLKAYFAKRNIVITPSQASPMMFHTAQTAEVLEDVAFSEGYFSVQDTSAALIVELLDPQKEESVLDLFAAPGGKCSYIAERMDNTGEVIAVDKIPSKMKLLKQAANRLQLTNIKMVVTDAFKYGPVAPAFHRVLVDVPCSGWGVFGRKSDLRWQAHQNIPELIKLQEKALDYAANFVTPGGFLVYSTCTMNPKENEDQISAFLKKNRNFELIPADAFIPERYTSAGYLKTIPFKHNMDGAFAAKLQRRK
>NC_020449.1|WP_015424670.1|1095031_1096351_+|ATP-binding-protein
MLVEFSVENYRSIYNKVTLSMEAVTKNELDDHIREVSHQRLLKTGVIYGANASGKSNIFKAFSFMKNMVLNSFKESQIGELILVEPFLLNSTGKDEPSSFEVIFLIDDVLYRYGFSAFRDHIAKEWLFSRKTIPRAREIVLFERSGQDIKVHIQFKEGKGEVKDKLRENSLFISLLAQFNGLIAIKIVKCFLDSNLWAMDAYNPIHTTALLDNNVVPLKWVNEFMQKADTDIKEIRINEQEIEKDMRINIPVSSLILKGKENQVVTLSIKTIHQFYDPKEDVLKEVEFDMEKQESEGTKKFYCLAGLLYATLQNGGRLFIDEIENSLHPFLTRIIIRLFQDKETNPKGAQLFFTTQNTLFLNKDNFRRDEIWFVEKAPDHSSDLYSLVEYKLPKGSARKDASYAKDYIRGKYGAVPYVEYADFAELFKKSRERTKNEQN
>NC_020449.1|WP_044278925.1|1096337_1096589_+|hypothetical-protein
MSRTKRPYNIRKIAPDLIIIVTEGEKTEPNYFRKFPVQKKKVIIIETGMNTISLISANPVNFVTKWNLSIHFFSIALFWVKLV
>NC_020449.1|WP_015424672.1|1096604_1097270_+|hypothetical-protein
MEYTFEAIKFFQARIEAYLNIWENATLEDMKSDQREKQHSPLNVRKALFRQAIGGHLTEGQEYRIVNQDLKWYLHPEFETFNRELRNLIKEKLEEKNLLYYWEPREYEEIAPEKLQGPFERELNCWKYVNLDYDDGDLGKDEAEISLKARWVLHCAYKANKLSEAEITQLIKLDLDALLCENAVYFNIFELKLITDFLLEQGVWDHLPDPLFVNRLSSQPE
>NC_020449.1|WP_015424674.1|1097812_1098280_-|ECF-transporter-S-component
MKWYLIVGLTVMVMIATVLVRIPVPGGGYFNLGDVVIIFSGLFGGWKAGLIAGGIGSALADLIGFPVFAPITLIVKGLEGLIAGLAKPAIKWQIYFFPAIAVIIMIAGYFLGCWLFPNLGLAVAIADLPVNIIQAVAGYIGGIALHLAYTKISST
>NC_020449.1|WP_020268708.1|1098314_1098926_-|hypothetical-protein
MKPQYRLLLVSLALIVFFVFFCLIYLENIPVQLVVLGVVLLLSAWTFKLKGLLKKLYHFLPFILLLFGVYFIFALFQIGQNKDYWIHYGITRTTLLISSLMFIQVLITWLKIDTFLDFPLGIEKLKYIILGKMLYKIAFSSYSELCLFVDSIPAEQAGKITLKKKFRKRLIVLLALITYVINEATLKGEMIDERIWHCHQVPK
>NC_020449.1|WP_015424676.1|1098909_1099434_-|hypothetical-protein
MIKIAPGIVSCWQDFSLLIEQELFFLPENIYYLQGENGSGKSSFIKHSLLPVLETKRNLFYFLYLQQLFHLQGYAIKSHSAFYKPELKLKSEWDCIQYLLHNLSEIYAIEPKPVYCLVDENLHLAEIYHYLKESSIPFCLIFCEHSSFSVTEEVNIINFQLIAPNQSRVYETTI
>NC_020449.1|WP_015424677.1|1099433_1099775_-|hypothetical-protein
MIHKDYLLADANIPLISCDRLRDELLIYNLDESATAKLIDQFEKLTGKTIDKFYKIEELSGGQKVILMALLAIYSPAPKIRFVNLLNALDPKRRDAIQSLIRNSGKDIILDES
>NC_020449.1|WP_015424678.1|1099896_1100364_-|nucleoside-deaminase
MICFSSQNHYLFMQEAIAEAKKAFTEDEIPVGALLVKNNTIILKEHNRSRQLANPLAHCEKLLIDKILTSEPGFLYDYTLYVTLEPCLMCAGMIILSKIGTVVYGAKDPKAGVVGSLYNVLNDKSFNHHPVVIGGILEQECAFLLEEFFHKKRTL
>NC_020449.1|WP_015424679.1|1100360_1102058_-|peptidyl-prolyl-cis-trans-isomerase
MNKLPTFIVITLLGLFFLVSCATNSSSVAGSVNGTEISLEDFFNSYRGHYAIFGYQTGRTPTKEEKEKLHNETWRDITKAIILQDYYKKYNISASVAEVLDTLSNSIPEHIIKSPRFQVNGKFDKKLYLQSLMTDQPENLAALRKHYQENVIPILKLQKVLIEEEMLSSKIRKQVEQIIASNADLELYIFAPSQLEISLSDAEISAWYQTNLEQFRLWQFYRLGYCSIPVIPDSTELSDAKNTAEFIRNELVRGIDIKDIIANLENKNSLVSFIDNGYQKTEELPWEIQNALLGLENGLCSEPLPYEKGWIMYQKIQSTKTLTLYNTIFVQALPKTASLLAPETQAQQIMKLALNIGLQQAADEFGISYTLTPAMSPDSLIVPANDIKGKLMKYLEIANSGDIIEPLYSAELSAWLIFEVVEKQSKEYLPLEEVKPQIVQILSKERRKDQNKQIVERWLINQNIPANYQWEKLEQVTIDSLWQGKPLTTIYYQAVKAYLEKANPPQITEGEVIIVPKVTAFRPQKTKISPERIKTIYTQNLPEDWFNSWMEEQVKKAKVVINTKP
>NC_020449.1|WP_044278926.1|1102054_1104661_-|DNA-mismatch-repair-protein-MutS
MLKQYYAVKEKHPDKLILFRMGDFYETFFEDAHTASRILNITLTTRNKNDENPVPLAGFPYHALNTYLDKLIKAGLKIAICEQTEDPKKAIGLVKREVTEIITPGAVLDQSFLEGNANVFLASLYYNDPQKKIGLAHLDISTGDFLFTELDNEELVNELQRFRAAELIVDSTQAEEYVKTLPLETLPTITVFDSWQFQPQEAIATLKKHFGVTTLEPYGAHNKLLGATAAGAALAYVQGLYNTPFNHISSLRYYSLSQYMQLDEISRRNLELVRSIRYGTKYGSLLSVIDQTMTPMGSRLLQQWLLHPLLDIKEITFRQDIIQSFIDKSSHLKELRLILKEIGDITRLVTRLGSLRINPRELIALKSYLYSARNLQTKLSTFEHPQFAVWQQNMGSFEDIIALIEKAINDNPPISITEGGIFAKGYNPELDELMDIIYDGKSWIARLEEDERRKTGINNLKVGYNRVFGYYIEVSSANKNKVPDYYIPKQTLTNSERFISPRLKEFEAKVLSSEEKIKNLEYELFKELRQNLAESLPRFQQLSEVIAELDVLSSLAFLAWQNQYSRPVFTESRELHIIDGRHPVIEKLMESDKFIPNDTHLDYPETSIAIITGPNMAGKSTYLRQVGLLVILAQMGSFVPASKMTLPVFDRVFTRVGASDNLAQGQSTFLVEMIETANILHSATSNSLILLDEIGRGTSTFDGLSLAWAIIEYIQKYKHSLTLFATHYHELTELENLYPDIKNYNVAVKQWNEEMIFIRKIERGGADQSYGIQVARLAGIPEKVIRRAKEILKNLEEHEISPQGLTATIRKKLVRDVPQIDIFEILADKASENDPIINEIKEIDLNKLSPIEAFQYLQKIQNQLLGEK

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Crispr_ID: NC_020449_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_18

1247568-1247691

Orphan

Consensus_repeat	Method
AACCCGGTGAAAAAGAATCCAGGATATTTATTTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_18

>merge|NC_020449|18|1247568-1247691|CRISPRCasFinder
AACCCGGTGAAAAAGAATCCAGGATATTTATTTCTTCATCTTTCGGGAAAAAGTTCCGTAGGAACAACAGATATTAACAACGGGTTTCAACCCGGTGAAAAAGAACCCAGGATATTTATTTCTT

>NC_020449|18|16|1247568-1247691|CRISPRCasFinder
AACCCGGTGAAAAAGAATCCAGGATATTTATTTCTT	CATCTTTCGGGAAAAAGTTCCGTAGGAACAACAGATATTAACAACGGGTTTC
AACCCGGTGAAAAAGAACCCAGGATATTTATTTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044278957.1\|1253825_1257176_-\|helicase	unknown	unknown	gnl\|CDD\|197275
NC_020449.1\|WP_044278959.1\|1259206_1259566_-\|DUF2089-domain-containing-protein	unknown	unknown	gnl\|CDD\|378280
NC_020449.1\|WP_044279230.1\|1243191_1243662_+\|ATP-synthase-subunit-K	unknown	unknown	gnl\|CDD\|235830
NC_020449.1\|WP_015424783.1\|1239429_1240752_+\|V-type-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|179373
NC_020449.1\|WP_044278961.1\|1260054_1260621_+\|small-multi-drug-export-protein	unknown	unknown	gnl\|CDD\|377692
NC_020449.1\|WP_015424782.1\|1237675_1239430_+\|V-type-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235248
NC_020449.1\|WP_015424796.1\|1257833_1259210_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NC_020449.1\|WP_015424801.1\|1262876_1265159_-\|C10-family-peptidase	unknown	unknown	gnl\|CDD\|366737
NC_020449.1\|WP_015424792.1\|1249572_1250442_-\|DUF488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377317
NC_020449.1\|WP_015424785.1\|1241344_1243132_+\|V(Vacuolar)-type-Na+-ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|235600
NC_020449.1\|WP_015424780.1\|1236162_1236771_+\|V-type-ATPase-subunit-E	unknown	unknown	gnl\|CDD\|179302
NC_020449.1\|WP_015424788.1\|1244693_1246097_+\|fibronectin/fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|224212
NC_020449.1\|WP_044278965.1\|1261755_1262403_+\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153245
NC_020449.1\|WP_015424791.1\|1248787_1249576_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424793.1\|1250535_1253835_-\|Eco57I-restriction-modification-methylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|380297
NC_020449.1\|WP_015424787.1\|1243736_1244609_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181619
NC_020449.1\|WP_015424781.1\|1236774_1237662_+\|DUF2764-family-protein	unknown	unknown	gnl\|CDD\|314007
NC_020449.1\|WP_044278954.1\|1240748_1241348_+\|V-type-ATP-synthase-subunit-D	unknown	unknown	gnl\|CDD\|179382
NC_020449.1\|WP_015424789.1\|1246093_1246849_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|224299
NC_020449.1\|WP_044278963.1\|1260617_1261763_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044278957.1\|1253825_1257176_-\|helicase	gnl\|CDD\|197275	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family. N-terminal putative catalytic domain of uncharacterized archaeal and prokaryotic HKD family nucleases fused to putative helicases from the Snf2-like family, which belong to the DNA/RNA helicase superfamily II (SF2). Although Snf2-like family enzymes do not possess helicase activity, they contain a helicase-like region, where seven helicase-related sequence motifs are found, similar to those in DEAD/DEAH box helicases, which represent the biggest family within the SF2 superfamily. In addition to the helicase-like region, members of this family also contain an N-terminal putative catalytic domain with one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily.	2.37601e-36
NC_020449.1\|WP_044278959.1\|1259206_1259566_-\|DUF2089-domain-containing-protein	gnl\|CDD\|378280	pfam09862, DUF2089, Protein of unknown function (DUF2089). This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.	1.31764e-36
NC_020449.1\|WP_044279230.1\|1243191_1243662_+\|ATP-synthase-subunit-K	gnl\|CDD\|235830	PRK06558, PRK06558, V-type ATP synthase subunit K; Validated.	2.70025e-24
NC_020449.1\|WP_044278963.1\|1260617_1261763_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	2.5303e-112
NC_020449.1\|WP_044278961.1\|1260054_1260621_+\|small-multi-drug-export-protein	gnl\|CDD\|377692	pfam06695, Sm_multidrug_ex, Putative small multi-drug export protein. This family contains a small number of putative small multi-drug export proteins.	8.23925e-42
NC_020449.1\|WP_015424782.1\|1237675_1239430_+\|V-type-ATP-synthase-subunit-A	gnl\|CDD\|235248	PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.	0
NC_020449.1\|WP_015424796.1\|1257833_1259210_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.26758e-08
NC_020449.1\|WP_015424801.1\|1262876_1265159_-\|C10-family-peptidase	gnl\|CDD\|366737	pfam01640, Peptidase_C10, Peptidase C10 family. This family represents just the active peptide part of these proteins. Residues 1-120 are not part of the model as they form the pro-peptide, which before cleavage blocks the active site from the substrate. The catalytic residues of histidine and cysteine are brought close together at the active site by the folding of the active peptide.	2.2205e-74
NC_020449.1\|WP_015424792.1\|1249572_1250442_-\|DUF488-domain-containing-protein	gnl\|CDD\|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	1.56587e-21
NC_020449.1\|WP_015424785.1\|1241344_1243132_+\|V(Vacuolar)-type-Na+-ATP-synthase-subunit-I	gnl\|CDD\|235600	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.	1.28464e-94
NC_020449.1\|WP_015424780.1\|1236162_1236771_+\|V-type-ATPase-subunit-E	gnl\|CDD\|179302	PRK01558, PRK01558, V-type ATP synthase subunit E; Provisional.	4.79995e-23
NC_020449.1\|WP_015424788.1\|1244693_1246097_+\|fibronectin/fibrinogen-binding-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	5.35974e-43
NC_020449.1\|WP_044278965.1\|1261755_1262403_+\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153245	cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.	4.42214e-70
NC_020449.1\|WP_015424783.1\|1239429_1240752_+\|V-type-ATP-synthase-subunit-B	gnl\|CDD\|179373	PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.	0
NC_020449.1\|WP_015424793.1\|1250535_1253835_-\|Eco57I-restriction-modification-methylase-domain-containing-protein	gnl\|CDD\|380297	NF033455, BREX_6_MTaseX, BREX-6 system adenine-specific DNA-methyltransferase PglX.	1.10712e-05
NC_020449.1\|WP_015424787.1\|1243736_1244609_-\|hypothetical-protein	gnl\|CDD\|181619	PRK09039, PRK09039, peptidoglycan -binding protein.	1.41343e-05
NC_020449.1\|WP_015424781.1\|1236774_1237662_+\|DUF2764-family-protein	gnl\|CDD\|314007	pfam10962, DUF2764, Protein of unknown function (DUF2764). This bacterial family of proteins has no known function.	2.40796e-53
NC_020449.1\|WP_044278954.1\|1240748_1241348_+\|V-type-ATP-synthase-subunit-D	gnl\|CDD\|179382	PRK02195, PRK02195, V-type ATP synthase subunit D; Provisional.	5.82253e-56
NC_020449.1\|WP_015424789.1\|1246093_1246849_+\|DNA-repair-protein-RecO	gnl\|CDD\|224299	COG1381, RecO, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].	6.5515e-17

>NC_020449.1|WP_015424789.1|1246093_1246849_+|DNA-repair-protein-RecO
MKNKLLAILIKQSQYSESSLILQYFTRQQGMISVIAKGIRKKNEKQQLLPLCEYELIAYEPKEQGLWLFSEANITRNFSAYPSSSTWAAAETGLELISHLIISQEDIATIYDLTISYLDYLKKVERNAILIFWRFLNRITILSGIGNPLSYCCLCKNPLDVPNAYLKTKGGFVCEKCLPEINPDNALMILSPPARNILTLLPEIANHLEDIIINRAVVNEINTVFELYWEAHHKQALHLKGLSVLAQFYNS
>NC_020449.1|WP_015424788.1|1244693_1246097_+|fibronectin/fibrinogen-binding-protein
MKYSYLKQWTQEMIGYQAVIESVLLFPELLVLQTKDKKALCIVLSKRDAFIFLQDNFHPPQEGKKIWQKLNNCHLTGISLAENDRLAYLELQQRDIYQQNKKYFLIAELMPPQPNAILTDSELHILDALHKYSYADNPQRQILPGLVYTAPKTSFQPILEEVKSPYPDGSTTCNDYFIHLYYNKLKQEEEAENGQKICTALKKELQKLQKKREKLKQDLTNAEKADFWLACAECLKTNLHNLKTGRESFTAINYLDPALQEIEIPLQKDKSPQENLQSYLKKYHKAKNGLQIITKNLAQTDAEIEKIKNLIAQAEKGELPDSVILPSKPTGHKIVQNAILADKILKLKINDEFQILIGRRAKENDYLTTQLARPYDYWFHCRIYHGAHIVLKCLKKTEPSPQLIELCCNLAAWFSKAKFSTNVPVDYTQIRYVRKPRKSPPGFVTYKNFKSVFATPMSLKEVREKLS
>NC_020449.1|WP_015424787.1|1243736_1244609_-|hypothetical-protein
MKATTAIIVAVLAILTIVFAVLWINANGKSKDIMKSNEELKKLYETSTSTIGEIQSSLESLEQDLSGQLFTQKEIPGTSPEERRNRIISSIAHMRDQIEADKKKIATLEKQLATSKNQLKGVQEIVNKLKASISEKEQIMDELQQRLGILNETLETERRTSAEEIQKREMTITEKEQQITQQSIEANTIYYVYGTRKELMAKGIMDRKGGLLGIGKVSTVKQNIPIEQFNSMNLLETQQISFPATKKGYSILTNHPATSYKVEKEGDQNILTILDPTNFRKQKFVVIELL
>NC_020449.1|WP_044279230.1|1243191_1243662_+|ATP-synthase-subunit-K
MASQNLAYFLAWIGLFLMVALSGVGSAWGTVIGGRATVGAMKKRDDVFPSCMILSALPGTQGLYGFGSFFILKAYVTPQINMLQACAILGAGLISGTVELISAYHQARIVATGIESIGSGHDVFAKTLILGVFPELYAIIAFAASFLIGGVIPTLA
>NC_020449.1|WP_015424785.1|1241344_1243132_+|V(Vacuolar)-type-Na+-ATP-synthase-subunit-I
MIEKMRKYTFVLYHQDYENFLAELQKLGLVHIIRSCDEKTESQTKNLELMREYGECVKFLAKLKSTAPKQASPLPTKALLNKINEAREEKDKLQHSIDTVKKQIRDLSPWGHFDYDLVRKLKEYGLTIRFYTCLKNHFKPEWQEKYPLKIINEVGGILYFVVITDNGDPALEADTFSFHQHTLQEFEDKLKELENEQKDIDDYLYSIAPTAIEMFQDELKHLSREYEFEDAIQQGKYEAENTIRLLSGWIPVSLEQGLKDFLEKNNIIYVSEDAKAEENPPIKLRNNWFARLFEPISKMYMLPYYDEFDLTPFFAPFFALFFGFCNADIGYGIVIIILAVILKLKMKNQGMKDIMTLLMIFGTASIIMGWVMGSALAFDLKTIPAIKDKIFIQDNNQIFNYALLLGAIQILFGIAISAVKTMKKNGFKFGLSTIGTWLLLFGLTVLGSSLLGVNISKVQPYLKYPIYIGLAMILLFNSPGKNIILNILNGFWLLYQIVTGYFGDILSYIRLFALSVSSAILGFVMNSIGSQIAHGIPIVGPIIFVLFMLFGHTLNIALGGLSGFVHPLRLTFVEFYKNAAFAGPGLEYKPFGKKE
>NC_020449.1|WP_044278954.1|1240748_1241348_+|V-type-ATP-synthase-subunit-D
MNLKFQYNKISQLQLIKQLAVRQRALPTLKNKESALRLEVKKARDQAFALDQKMKERTAELDAFMKLFVEFDPDIVKIKNVEIKTRKIAGVKTPLLENIEFEIADYNLFKAPSWYPEGIALLQEICQLQIERDFFIRKMQILEQVRKKTTQKVNLYEKVQIPAFEDAILKIKRYLEDEENLSKASQKILKSRFEQESQL
>NC_020449.1|WP_015424783.1|1239429_1240752_+|V-type-ATP-synthase-subunit-B
METQAFQKIYTKLNQITKATCTVQATGVGNDELATVAGRLAQVVKIIGDNVTLQIFAGTEGIGTDAEVVFFGKAPTLKVSDELGGRFFNAYGEPIDGGPEIEGKEVEIGGPSVNPVRRKQPSELITTGIAGIDLNNTLVTGQKIPFFADPDQPYNEVMAMVALRAQSDKIILGGMGLSNDDYLLYKNTFENAGVIDRIVSFVNTTEDPTVERLLVPDMALTAAEYFALEKKEKVLVLLTDMTLYCDALSIVSNRMDQIPSKDSMPGSLYSDLAKLYEKAVQFPDGGSITIIAVTTLSGGDITHAIPDNTGYITEGQLFLKRDTDIGKVIVDPFRSLSRLKQLVIGKKTREDHPQVMNTAVRLYADAANAKTKLENGFDLSDYDIRVLDFAKEYSDKILAVDVNISTDEMLDRTWELFQKYFNRAEIGIKDEFMNLYWKKG
>NC_020449.1|WP_015424782.1|1237675_1239430_+|V-type-ATP-synthase-subunit-A
MTTGIVKGIISNLVQVEVSGPVSQNEICYINLGKEKLMAEVIKVVGNIANTQVFESTRGLKPGDTVEFTDHLLEVKLGPGMLSKNFDGLQGDLNKRKGVFLTRGEYTDPLDENSLWKFTPLVKVGDKVSAGDWLGSVPESWITHKIMVPFVMEDEYTVKSIAGEGDYKITETIAVLIDKEGKDIEINMIQKWPVKIPITAYVEKPRPFKLLETGVRTMDTLNPMVEGGTGFIPGPFGAGKTVLQHSISKNAEADLIIMAACGERANEVVELFVEFPELDDPRTGRKLMERTIIVCNTSNMPVAAREASVYTAMTIAEYYRNMGLKVLLLADSTSRWAQALREMSNRMEELPGPDAYPMDLPAIISNFYARAGFVYLKSGTTGSITFIGTVSPAGGNLKEPVTESTKKAARCFYALSQARADSKRYPAVDPIDSYSKYLEYPEVIEYLNANVNPHWVKDVNHTKDILLRGKEAQEQINILGDDGVPLSYHDKYWKSELVDRIILQQDGFDKVDQSTPMKRQQYMLELILEICNADFVFEGFEEVMPFYTRLINICKQMNYMEFQTPEFNNYEAELHKIVAERRAK
>NC_020449.1|WP_015424781.1|1236774_1237662_+|DUF2764-family-protein
MKQEYYYFVSGLPNINIDDTKLPWTPEEFLAEAKTQVSENDYHLLEILHLPMDLDNLLRVLYKTNKERNMEGLYDDAFWEEYLAFLRNVIDNPEFKTPIEFAALPNFIKEIVLNALKQEEMQPLPQTELALLKKFYAWTAKSPNDFIRNWFAFDAHIRNILTAINGRKFNLPYAQYLVGEGETTEKLSKSHTADFGLGKEDELYNALTRIYEQNNILYRERGYDILRWRWIDDYNFFNYFNIDRILGYYCQLRILTRWIKSSPELGKEVFNSILSDLNNSFSFPADFNIKSTQRK
>NC_020449.1|WP_015424780.1|1236162_1236771_+|V-type-ATPase-subunit-E
MNDQLQDLLKRVYEEGVAKANAEAEKIISQAKEQAEETIAKAKAEAEAILKDAEKKAEDLKKNTQSDLNMAYNHTLTALKQKITDLVLSEALNTKLNDAFNDTEFVKKLILETLTAWRENTSSGTIIISEKMKPHLDEFYIKSLKDIFDGKLKVDFSPVMKQGFIIAPEDGTYKIKFEGDDFANLFKNYLRPRTKEILFGNQ
>NC_020449.1|WP_015424791.1|1248787_1249576_-|hypothetical-protein
MKKKILIAVKTYPNPSQKYNETVCTAGLDEDKKWIRIYPINFRSRPLAERYKKFQWIEVDIEKTEGRDFRPESYRLKNFDDEITTLEQVTSYDVKKEYILNNVYDSLDVLLRDSQEPKNISLATYKPSSIVSAGYEHCKRNWNKEEQEKFLQLNIFNIAPQIPLKKMPCNFKYTFKDINGSEHTMSILDWEIGALYWNCLKSSKSEKEACQKVINKLEDIANNKDMYFILGTTLEHHQRRLPNPFTIVGLFYPPVDEQLTIL
>NC_020449.1|WP_015424792.1|1249572_1250442_-|DUF488-domain-containing-protein
MLYKRQQEILYLISQLNGIGKVKLQKLMFLANYKQDEVSYDFVPYKYGPYSFILQKDLDYLVRNNFLIFKHNKYRAINPNYINITPKRRDILNSIISRYSMFSTKKLMQYVYREYHRFAIKSCKAESFLSAIEMSEIKTQIPDTTNPSIFTIGYEGKSIDKYLSDLVFSGIKVLIDVRANAISMKPEFSERNLGNFCNLMDIKYVHIPELGISSKQRKEIKDKKILFQDFRTNLTSNGSYYLNKIRELAITNKRIALTCFEANPEECHRSIIAKIIYDNLPQEYKLVDL
>NC_020449.1|WP_015424793.1|1250535_1253835_-|Eco57I-restriction-modification-methylase-domain-containing-protein
MELKPYLVLPSNFSLDNWISYFDKASSVFAEKIDHLPKLNDVNFSEITALGNLSFSDATNCGIYLIKVNRPLTDKTARKKQFDKAIEIIKQKQIQAGLFIFYDENKSFRFSFIYPVYKGTKRAYSNYRRHSFYINADLPNKTYQLQLSKYKLDSLVEIKEMFSVERISDLFYQEFEQEYAKLQKGIKHLYNQDITAEKRGDFSLPFVLRIIFLGFVQKKGWLGNNSKFIQNYIKTYNSDIHKNGIYQDLLCPLFFQALNSAPSQKNKFSFPNITEPFNTQLVNAPYLNGGLFRKHENYDLDALYITDEAINNFTEFLFSYNFTLEENTLYDEELELNPEFLGIIFEKLINKQYGAIYTPRLEVDFMCRISLVKYLQKNCSSSIKLEELYKLFFPEYGDENEQTAGNFSFEEAKEILEKLEQITICDPAIGSGAFAVGMLSVLDEIECLLYEKFLHQETPSNPFERKKRIIFQSLYGVEVKQWAVWITQLRLWITLLIDAEDNLKNSEEPLLPSFDFKIRQGDSLIQILGNYLFPISGEGLVGLDIQRKIKELIKLKTDYYYNKCSNKQFEIEKKQQDLYLDILLKKRNELNAALKRLERDSINEVQDNFLDSDIQIELDLSTKKQKHEIEKLKYQINIVEYEIKQIMNHNLPFIWIIDFPEIFIENRGFDIVIGNPPYVPQEEIEDPLNKIERSKYKALLKTMVAQDFPQDLQESNINGKSDLYTFFYIRGLRLLNPKGILTFISSNSWLDVEFGAWLQKFLLENCPVYFIIDNLSKRVFRSADINTIIAVIGAKQKMVASDDLIRFAAFKLPFESSLYTENFLTIEETQNRIDYDDLRVNPVPRIKLLEEGLNNSRDNKYIGNMWGSYYIRSPHFFLNILEKCENKLVNLNKVAVIKGYIHDNSVSDKYPTKYFVKSVKDINVLGVDTNTPGVIRKGIKSTNGNDIIAPILYPRTFGSRHIVIRNLSNVFFKEFYKIIPIEEENVDSIFIQLNSSFGVFQRELIGLSNLGGGALKFSINSIGLFRFFTKIEYKDYCDILEPLLTEKVDDFFVECNKSYRIELDDIIFNYLGLTKDERRIFMDILKDMIENRLNRASSC
>NC_020449.1|WP_044278957.1|1253825_1257176_-|helicase
MSNFITNSGNKNLKSRLSELIRESQELKFLVGFFYFSGIQELIDSLQQNPNLILKVLVGLNVDCLSYGIVEYAEERYKQNVERIVLYHQSVLKAINNDIFDNELFYQQASYIIEQITAGRIIIRKTRKPNHSKLYLFKLKEEQVVRKNLFITGSSNLTKAGMTDQEEFNVEISDYGFSEAEQYFDTLWDNAISITEADKEKATLLNNLQHKTLLKSIHPFDAYMYVVKSWLDTFYTEEYSSDIAYFMQKKGYRPLKYEIDAVWQSLSILEENGGVILADVVGLGKSIIASLIGWKMRKRGIIICPPGLIGDETARSGWKQYKEDFELYDWEVRSGGDLDSIIEFLNRAKNIEVIIVDEAHRYRNGTTETYEKLKTICRGRKVILLTATPFNNTPADILSLLSLFIVPKKSNITLNSNLVDLFRFYNSLFKDLAFITKNRNSEDPSKKNDAQRKYNGLFGNGEIDIKKVTRRAKILSQQIREVIEPVTVRRNRLDLLSDPEYKEEIKELSKVENPQEWYYELTQEQSAFYDRVIEEYFTDSQNFPDRFKGPVYKPYKYEGIKTEEGKLTRQEQIDQLSQDNLYDILRRQMVKRLESSFGAFKKSVENLLNSYIQIKTFIQNSNGLYILDRKLINKADVDDPESIDAILDQFRQNNLDKEGRKNKIYNVNDFTLKEEFFADMDSDIALFQKILKEIDSLKLVENDPKLNTLLKNVHNILNQPPKKGEPPAKVVIFSEYADTVKHLESSLKEHFKNRVLVITGGLSGTILEEINTNFDAVHTIQNDDYDILLSTDKLSEGFNLNRASTVINYDIPWNPVRVIQRVGRINRISKKVFDKLYIINYFPTEQGADIVKSREIAEQKMFMIHQTLGEDTRIFDPDEEPTPAKLFTKLQTNPYELEPEGLYTKLKNLMFNWKEQYPERVKDLENMPIRIKTAKPYSSDSLVMCIRKGKLFCVSQDFTDEDGHYLALPFEEVLKRIECTPETEHLKLSPDFWQAYNLLKKEADNFSYRQSQLSNSEKAYNFLSYLLEVPDSDIQNWYPFILMLKEDIQNYGTLPDYTLKTIADWNNNGKPNFKHIIQELEKLSKTLGKDYLNKVKYGLKVYEPQVIVAIEDRIWN
>NC_020449.1|WP_015424796.1|1257833_1259210_-|DUF4097-family-beta-strand-repeat-protein
MKKFNVEKKWVFEPLNKVVIENHLAKLFIHTGEGREVYMEGEVNFKNPQNDFMMDDYILSEYRDGVLKLILQEIASEDVKNVVITITIPEDVFLDLESENDPVNMDNLKIGIKVLSENGPVSVQNCQGDIHLENENGMIRLNNCQGNIFARLENGPLSAANISGNTLHLEGENGPLKIRLSTYPNVEISSENGSVYFETTPVEEGDFLLKSQNGSINLILPNDFDFALEAKTQFGRIKSTLDLPVTVENDAYVIINGDGATKIKAITENGIIKINSDTHLNLDFVKNKFEQIRIALLNVNTEEEKQKVVDMVNKVADYINRIASSFKEDIIKEKITSATSKLKDLVVNFDFRETNDKVIKSVEDIGSQIQDAFKEGIKNIKESVDDLKKHRFHTESVAAYVKKILDSPQIKPYLGGEHKKKEKENIADRSRIKILEMLEAGKITAEEAERLLKAIGKE
>NC_020449.1|WP_044278959.1|1259206_1259566_-|DUF2089-domain-containing-protein
MNLSNCPICKGELKIRVLHCPHCEISFQGDFENNWLAELDAGQLEFIRLFLLVQGNLKELQNQLGISYPTVKNRLAEIIGIITKKEPVTDTVIDVLSDLEEGFINVDEAVSMIEQRRKK
>NC_020449.1|WP_044278961.1|1260054_1260621_+|small-multi-drug-export-protein
MDNRLKKILLILLIVILSQPLFCNTTADKTVAWLKAKGVAPELIVVIISMIPVIELRGSIPVAIFLFNIPWLEAAVLSIIGNMIPVPFLLLLIDWFFGLISKVKPGRKFTEWLFTRTRRKGKSIEKYEEIGLAIFVGIPLPGTGGWTGALAANIFGLRFWRSMFFIFLGVIMAAIIVTILSLMGTLAL
>NC_020449.1|WP_044278963.1|1260617_1261763_+|lipid-A-disaccharide-synthase
MIRKERYKIFWLVGESSADLHSELVMKALNDKFGNLTHIGIGGPRMQRQGLKTLFPFEKFAVMGFVEVVKHLFFFLKVQRKLGKLFSTEKFDLAILVDYPGLNLRIAKMADEMRIPVLYFICPQFWAWKHKRVYQLKDSVRYVACILPFEEELLKIHNINCSYVGHPIAEEITFELDRGSFARFFGLDPNKKWIGFFPGSRNNEITKMLPVFLQTAQKWNQTEYQMLFSKSHSVNHQLYMHLIEGQKNIKIIDGYNYEMMKYCELLICTSGTVTLEAAYIGTPLVICYKGSYLSYLIGRIFVRIKHIGLPNIVLDADLLPELIQGEMKPDNIYKAGMQILSDPEKNAQIRKELFKLRAMLSDKHPSQEMPKIVRYLLDTYG
>NC_020449.1|WP_044278965.1|1261755_1262403_+|lysophospholipid-acyltransferase-family-protein
MAKVLFYLERKLGAWFLLLLRKTLKFKVINQESSDNIRCIYMFWHRNLLMMTLQRVYHGAAVMVSSSKDGELIAGPLWELGYIPVRGSSSFKGSSAMREMIKISQKISLAITPDGPKGPCYTCHPGIFQIAYLAKIPIVAVAVNADKEWQFNSWDRFRFPKPFAKLTMIYSDPIWVKSKEDFATAEREIRDFLAKNEKDTFFSQREKEKKRKVRW
>NC_020449.1|WP_015424801.1|1262876_1265159_-|C10-family-peptidase
MRLNRNQLARKIMLVAGLCLVTIIMWAKVVEPDNALLAAKYYLQEAGLKSPIYAGNAELFVYSSGKLLPLEFNKAVEFEPTLYFINYANGNYAIVSAEDNFYPVLAYSDEGLTDINNLPPAFYYWLENYSAQIEQIREAKIAYPENVQLWQSLIEGSYRNAFRTERSVGPLLTTLWDQGWPYNALCPVDSQGSGGHVYAGCVATAMGMVMKYWNHPQTGVGSDSYYCPGYGYQSANFENTTYLWDQMYDTAGATPAEYLPIATLLYHCGVAVHMGYSIDGSGAQSTDAALAFVEHFRYPNAQYVMKNSYTDANWNNLLTSQVDNGIPVYYSGYDPVEGGHAFVMDGYDTANHFHFNFGWSGSGNGYFYTSNPGGFTNNQSAIINIIPENYSISAVPVKLIAHDTTAGDNFTVTVKTNPILGSWNVTHYDFVLYYDSEFIDYIGYSTTGTISENGTITVVENPSGIISVDWNNTAHICGGGVLINFTFRTRDMGDFLFDITSMHYNTTPVSNVSYVMIHSSAPVDNIAESRIVLTNIMNLTYNSIGTTQMNTTYLLPSWNITHFQYHLNYNPAKIAYNDIITEGMISANCEVNVDSSNPGVLNITGNSTVPLIGAGALMKIRFKAIGNTGSISVTQISISDFFYNNVAISDVGTANVVLSAYTANEDEIVAVPEPKLEIYPNPFQDNAMLKFTGTNKAPVRIHIYNIKGQLVKELLISDPLNSQISWNRSDVKGKTVADGIYFLHWQQGEQSGINKVLVIK

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Crispr_ID: NC_020449_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_19

1323976-1324285

Orphan

Consensus_repeat	Method
ACAAAGAGAAAAAGAGATAAAG	CRT

6 spacers

The CRISPR arrays of NC_020449_19

>merge|NC_020449|19|1323976-1324285|CRT
ACAAAGAGAAAAAGAGATAAGGTGAGAAGAGTAATTTTTTACAAAAAGAAAAAGAGATAAAGAGAAAAAGTGAGAATTGTAATTTTTCACAAAGAGAAAAAGAGATAAAGTAAGAAGCTTAATTTTTCACAAAGAGAAAAAGAGAGAAAGAGTTAAAGTAAGAAGCTTAATTTTTCACAAAGAGAGAAAGAGATAAAGAGAAAAAGTGAGAAAGTGGGAAGAGTAATTTTTTACAAAGAGAGAAAGAGATAAAGAGAAAAAGTGAGAAAGTGGGAAGAGTAATTTTTTACAAAGAGAAAAAGAGAGAAAG

>NC_020449|19|3|1323976-1324285|CRT
ACAAAGAGAAAAAGAGATAAGG	TGAGAAGAGTAATTTTTT
ACAAAAAGAAAAAGAGATAAAG	AGAAAAAGTGAGAATTGTAATTTTTC
ACAAAGAGAAAAAGAGATAAAG	TAAGAAGCTTAATTTTTC
ACAAAGAGAAAAAGAGAGAAAG	AGTTAAAGTAAGAAGCTTAATTTTTC
ACAAAGAGAGAAAGAGATAAAG	AGAAAAAGTGAGAAAGTGGGAAGAGTAATTTTTT
ACAAAGAGAGAAAGAGATAAAG	AGAAAAAGTGAGAAAGTGGGAAGAGTAATTTTTT
ACAAAGAGAAAAAGAGAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424864.1\|1326069_1327440_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_020449.1\|WP_044278976.1\|1331457_1332342_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NC_020449.1\|WP_015424857.1\|1320923_1321751_-\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NC_020449.1\|WP_015424865.1\|1327436_1328306_-\|protease-HtpX	unknown	unknown	gnl\|CDD\|235478
NC_020449.1\|WP_015424853.1\|1319183_1319603_-\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NC_020449.1\|WP_015424869.1\|1332369_1338762_-\|signal-peptide	unknown	unknown	gnl\|CDD\|275042
NC_020449.1\|WP_015424866.1\|1328670_1330014_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NC_020449.1\|WP_044278978.1\|1340279_1342460_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_020449.1\|WP_015424855.1\|1320273_1320618_-\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NC_020449.1\|WP_044278977.1\|1338772_1339591_-\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NC_020449.1\|WP_015424859.1\|1322046_1322682_-\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NC_020449.1\|WP_018198457.1\|1323327_1323654_-\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NC_020449.1\|WP_015424860.1\|1322692_1323325_-\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NC_020449.1\|WP_015424856.1\|1320628_1320907_-\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NC_020449.1\|WP_015424858.1\|1321762_1322050_-\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NC_020449.1\|WP_015424854.1\|1319615_1320263_-\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
NC_020449.1\|WP_044278974.1\|1325614_1326046_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_173307546.1\|1330198_1331413_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|273853
NC_020449.1\|WP_015424852.1\|1318986_1319187_-\|50S-ribosomal-protein-L29	unknown	unknown	gnl\|CDD\|178971
NC_020449.1\|WP_044278979.1\|1342474_1343146_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274868

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424864.1\|1326069_1327440_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	7.37905e-128
NC_020449.1\|WP_044278976.1\|1331457_1332342_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	8.99258e-130
NC_020449.1\|WP_015424865.1\|1327436_1328306_-\|protease-HtpX	gnl\|CDD\|235478	PRK05457, PRK05457, protease HtpX.	1.12129e-109
NC_020449.1\|WP_015424853.1\|1319183_1319603_-\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.09831e-92
NC_020449.1\|WP_015424869.1\|1332369_1338762_-\|signal-peptide	gnl\|CDD\|275042	TIGR04189, gliding_motility-related_protein, cell surface protein SprA. SprA is a cell surface protein widely distributed in the Bacteroidetes lineage. In Flavobacterium johnsoniae, a species that shows gliding motility, mutation disrupts gliding.	5.90096e-113
NC_020449.1\|WP_015424866.1\|1328670_1330014_+\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	3.26091e-113
NC_020449.1\|WP_044278978.1\|1340279_1342460_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	5.74341e-52
NC_020449.1\|WP_015424855.1\|1320273_1320618_-\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	5.16189e-49
NC_020449.1\|WP_044278977.1\|1338772_1339591_-\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	3.70915e-75
NC_020449.1\|WP_015424859.1\|1322046_1322682_-\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	2.24662e-73
NC_020449.1\|WP_018198457.1\|1323327_1323654_-\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	3.07926e-55
NC_020449.1\|WP_015424860.1\|1322692_1323325_-\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	6.3156e-111
NC_020449.1\|WP_015424856.1\|1320628_1320907_-\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	3.5887e-60
NC_020449.1\|WP_015424858.1\|1321762_1322050_-\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	4.85291e-39
NC_020449.1\|WP_015424854.1\|1319615_1320263_-\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	1.18051e-117
NC_020449.1\|WP_015424857.1\|1320923_1321751_-\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NC_020449.1\|WP_173307546.1\|1330198_1331413_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|273853	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI\|PG1271), and the other from Staphylococcus aureus (OMNI\|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP\|P38021).	0
NC_020449.1\|WP_015424852.1\|1318986_1319187_-\|50S-ribosomal-protein-L29	gnl\|CDD\|178971	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed.	4.19772e-18
NC_020449.1\|WP_044278979.1\|1342474_1343146_-\|hypothetical-protein	gnl\|CDD\|274868	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.	0.00932538

>NC_020449.1|WP_018198457.1|1323327_1323654_-|30S-ribosomal-protein-S10
MSKHDNRIRIKLKAYDHRLLDKSVAEIVKSTRNTGAKVVGPIPLPTDRTIYTILRSPHADKKSQDQFQMLVHKRLIDIVNPTQQTTNALKKLSLPAGVHVEIKANTRS
>NC_020449.1|WP_015424860.1|1322692_1323325_-|50S-ribosomal-protein-L3
MIGLIGKKIGMTQVFDSDGKVIPVTVIKAGPCKVICKRTEAENGYEAIQIGYEEIPARKVSKPLQGHFKKYNSPFYRYVREFRPSYGQHIESVQIGDELKADIFGENETVSVSANSKGRGFTGVMKRHNFGGFISSHGSHESFRGPGSIGQCAQPSRVFKGMKMAGQYGNTKVTVHHLKVIKVDPENNLIMVKGAVPGHRNSLVTIHKEQ
>NC_020449.1|WP_015424859.1|1322046_1322682_-|50S-ribosomal-protein-L4
MLTAKRYNMQGELIGEVDLPEGIFEVDVNAPKILLNEVVTMFLANQRQGTVQKKNRSMTAGSTRKLFRQKGTGNARVGTRRSPIRVHGGKAFAIYPKDWYRKIPRTKKRLALKVALTDRAREGRIMIVDNLSFEKPNTKLAVELLNKIIPEKGYKLIVTDGHHIPTVKSFANLPEVMTDRADSLNAYEVLKSSYIIMTDEALKKVEEVFNK
>NC_020449.1|WP_015424858.1|1321762_1322050_-|50S-ribosomal-protein-L23
MIHPRNIIISPIITEKSSNQVQNENTYSFKVSSNANKIEIKKAIERIFAVKVLAVNTIRYKGKPKSLGKYNGKRPDWKKAIVTLREGDKIADFEV
>NC_020449.1|WP_015424857.1|1320923_1321751_-|50S-ribosomal-protein-L2
MGIKKYRPTTSSLRFRTGHTFEEITKKTPEKSLLKPKHRTGGRNNSGRITCRHRGGGHRRHYRIIDFKRDKIGIPAKVAAIEYDPNRTARIALLHYVDGEKRYIVAPDGLEVGAKVMSGPDAEIAVGNAIPLEKIPLGSVVHNVELKRGKGGQIARSAGTFAQVVAKDGDYVHIKMPSNDVHLIRKECLATIGSVSNPDHSLIQIGKAGRKRWMGIRPSVRGVAMNPVDHPMGGGEGKTSGGGHPVSPWGKPAKGGKTRKTHKYSDKYIVKAVKK
>NC_020449.1|WP_015424856.1|1320628_1320907_-|30S-ribosomal-protein-S19
MARSIKKGPFVDAHLLKKVEVLNAEGKKSVIKTWSRRSTITPQFIGHTFSIHNGHKFVPVYITENMVGHKLGEFSPTRTYRGHKEKKKKVTR
>NC_020449.1|WP_015424855.1|1320273_1320618_-|50S-ribosomal-protein-L22
MEAKAKLCYARGSARKARLVLDTIRYKPVTEAQNILRFSRRRVAGTINKLLASAIANAQHQDPKVNLDKMYVITATADEGPQMKRYMPRAMGRAYMIRKPTCHISLEIQTIEEE
>NC_020449.1|WP_015424854.1|1319615_1320263_-|30S-ribosomal-protein-S3
MGQKIHPVLYRLGVNKETESIWFAQGTSYVDFLQEDIKIRNYIRKRLSDKMVSRVQISRKTSSIIIDIYTARPGLVIGKKGEDIDKLRNELNVFINKDRKNPISVSINIEPIDKMWLDARLVAQEIARQLEERISFRRAMKMAIRYVMKENAQGVKVQVSGRLGGAEIARSERYKQGRTPLHTLRADIDYANVEANTTYGVIGVKVWIYKGDILD
>NC_020449.1|WP_015424853.1|1319183_1319603_-|50S-ribosomal-protein-L16
MLAPKKVKHRKMMKGRRKGLSWTGCNISFGDYGLIALEDSFITSRQIEACRIAITRHMKREGKVWIRIFPDKPITKKPAETRMGKGKGAPEYWVAVVRPGRVLFEIEGVDVNVAKEALRLAAHKLPIKTRFIAREGVEL
>NC_020449.1|WP_015424852.1|1318986_1319187_-|50S-ribosomal-protein-L29
MKIEEIRDLSIEELQAKLEELRIELFNLRFQKTKNLLDRPDRIRNIRHDIARIYTILTEREKEKKI
>NC_020449.1|WP_044278974.1|1325614_1326046_-|hypothetical-protein
MKRYLYLIFAILLMLALGSCESNDSDTIAQREIRDILYDISMEFNLKNMSGIMEHLHTEYRHKGMTSYNFNALWLDRMAQYSLLEIEVLYIDLDDDYAVVHSKNKFTSHSETLTLNEPEDSGDISYFKRENGVWYIYGNQRLY
>NC_020449.1|WP_015424864.1|1326069_1327440_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MKHIPNLEIKKMAMGGFGIAYAEGKAIFVPYTAVGDVVDIDITIEKKDYAYGKVTKYISYSDSRVEVQCPSFAAEIPCGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQTGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHIGFRCNSDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQNINRQKENVILGKETKLLYGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVNSNNVILDAYCGIGAIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAVLIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYKVVFLQPFDMFPNTWHIECLAVLKHNDYNINMR
>NC_020449.1|WP_015424865.1|1327436_1328306_-|protease-HtpX
MNFLKRMGIFLLTNILVMLVLGIVVGLLGLKMEDLWGLLIICAIFGMGGSLISLYLSKPMAKASYKIQIIKPGIEHPKIAYLLSAIESMAAERNIIMPEVGIYNSRDANAFATGASQNNALIAFSSALIDRLSEEELAAVAGHEMTHITNGDMVTMTLLMGVVNTFVMFFARILTVLIDNALRDDRGGGLGYFGYMLVIMVLQNILMFLANIPIAAYSRWREFKADAGSAKLVGAGPMIEALKKIANAYVPEKRSDSYALAKINNQKRISLFATHPPIEVRIQHLQEML
>NC_020449.1|WP_015424866.1|1328670_1330014_+|MATE-family-efflux-transporter
MKHSKIEILEKTPVAYSILYLALPSMLSMLVNILYNLTDTFFIGKLNDPFKVAGVSIALPYYNMLMAIAGIFANGGASYLSRLLGKKDLKTARETTTTAIFTVAIVSIFAAALGVLFIPTYLKLSGASALTALSARQYLTAIFIGSPIIMIKFTLIQLLRAEGAAKEAMLGLFIGTGANIILDPLFIFTFKMDVTGAAIATVIGQGLAMLYYISYYLKKKSLASPGRKYLHPRWSCYKEIFAIGIPSSLSQVMMSIGNAISFKLASAYTDHTIAALGVVSRVFSIAIFAFIGLSIGIQPLIGFNYGAQNYTRMKKIIKMSNIICLGMSAVFTLFFALFPGELIAVFIKDKAIMKIGTQILNAYVFAIPFAGLGMILMAALQAMGKAIPAFIVSLSRQGIVYIPMLYLLNYLFQFSGLIYAMPIADVITTILSFTFVYHITKRLKSSP
>NC_020449.1|WP_173307546.1|1330198_1331413_+|ornithine--oxo-acid-transaminase
MELEEKYGAHNYHPLPVVLAKGEGVYVWDPEGNRYYDFLSAYSAVNQGHCHPKIIQALIDQAKELTLTSRAFYNNKLGEYEKYITEYFGYDMVLPMNSGAEAVETAMKLARKWAYNVKGVASDSAILIFADNNFHGRTISIISASSDPDCFGGFGPFTPGIVRIPYDDANALKEYLEKNGKNVAAFIVEPIQGEAGVVVPKEGYLKDCYDLCHQYNVLFIADEIQSGLGRTGKLLACDYENVRPDVLILGKALSGGVLPVSAVLADKDIMLQIKPGEHGSTYGGFPLACVVAIAALEVIKEEKLTERAFELGEYFRNELRKIEHPMLKLVRGKGLLNAIVIEPMNGFEAWDVCLKMKDKGLLCKPTHRHIIRLAPPLIITKEQLDECIQIIKDVFNDLSANLGQ
>NC_020449.1|WP_044278976.1|1331457_1332342_+|GTPase-Era
MNNSANFKSGFVTIIGKPNTGKSTLMNLILGEKISITSPKPQTTRYAIKGIWNTSEHQIIFVDTPGYLKPRYELQEKMLKIWHNALKDVDLIIFLTQIDGFPTEYDKEVLNQLKTLKNPQLAVFNKLDLNPEVDRNELVKYLPESINEVFFVSAKTGENIPELMEAIKYYIPFHEPYYDNDMLSDLPMRFFAQEIIREAIFHFFEEEIPYSSAVLIERFKEFPDKVIIDAVIWLERESQKPILIGKNGSSIKKVREYAERELTRFMQMPVQVHLFVKIKHKWRKKQSALKELGF
>NC_020449.1|WP_015424869.1|1332369_1338762_-|signal-peptide
MTKKLFACLILLALTVLWATETVPEVSNPPEDDQTEQKGIFPARYFRPKKEIKRELDPLTEKALYPRLYLTEYNPIINNRIEVYKINKGMNYYKTKPYEIPAFAPEYKEEIDFANGKVILCVQVGNYKIAPDVPISFDRYFSNMQTKAFHKSLIANFKTQEQVAQTVSSGLFKDLTLLPEIAMPKAMQKVLGSSAGRLNLDGTQKLTMQVSNTHRKQVPIYDQSGKNVFDLKMEMETNLRLSGTIGDKIAVNFKYNSKQDEELFDMNNVNVKYTGYDDEFIQSIEGGNIALSLSGSRYVSYSASSQGLFGITTKFKYGNLDLSVIASKEESQKNTQTYIGKSQADSSTVSSWKYARRTMYYLHDPYQLYQLKTGTNIPPGWINNAIETAPDGSWIVNENFLPANGTVRLFYDDANYTNNTASAVGDTIYYSNNMRPPYEPCYDELIEGTDFVTDYDSGIITILKTIDRTATLGVQYTRRDGVQVPPPNSDTSRLHVKVLRKKYQEYIPYDPNDELNTWHLQMRNIYDMGRTNIKNDGFELQVYTVNVDLTRNYNLPDNLVFGDISTYNDYLRLNANGSPDGLINGDDATVNLTNGWIIMPFIEPMRGLGDGIIYRKENEDEYSYQDSTSIFINIKGKIGREAIELSSMGVLKGSVKVKVNGNEQRENIDYIVDYDFGRITFLTAAGKDPDAKIEIEFESRTLFSVAQKNLAGIRANWKLSDYAKLGGTLIYRSEDVSDRRPRIGNENIEMLMGDVDGELTFKPAFITKWLDALPLINTTAPSQLSMSGEVAFTMPNIYGDPKSKKKEAYLDDMESIMDSYPLGVTYNTWMLGSKPFSTSYAKGRINWFNPKDVKRKDIEAEATLTEQEKDEYVTVLTMIVKPNPVQIPGSTTHSWAGIMKYLGNQLDFSQKKYLEVYAKLEPLYPNTNIYPNVTMHIDLGDINEDFYTEYGGYGVLNSEDVNRDGVLTISEDIGLDGIPKNQPGHDPNDIAYPASGNDYSGVNGTEENRILDTEDLDGNGVLNTLDRYLSYSFSLTSPDSSLVVDSYNQWRMFRIPLNDEQYYQMVNSSGTNIQPSLQKISYARIWLDTDAQMDVKVRIADISVVGNKWQDNFIRQFKYGNAPPPNSYVQYYNPIIEPSVLIAKNTSYISGIVTNQKNFTHYTSPAGTWYTEEKKESAESALTLEVNHLQRDQMCLLRQRMLDTQNLLSYDKIRFWVYPEAAQGSYSNLDSLYIIFRIGADSLNYYQVRQRVPVRPYNAKMNAKDWIQLEYNLQDLISLKEINPNAEADSLVNIIPGDEGQLGKYYRGKPSLINIRDIYLGVYVPGAHFYANQMDIKEFSGIIYFNDIRVADPYEDLGIAKRLSVSGTFADVATINVDFEDKSENFNTTIQRGRSNTFTSTQSLNITNKIFLNKLFPNSWNLDMPLSLTRNYSLGTPRFRANSDLLRANIADPELKKIEKTEHLAYSADFGFSQKQAPKNKILQYTVYRTSLSGRIESSYNNTSTAVDTLLAYRGTLNYNLNIPAEKTSFKLFKNYRLGYFPNTFSNSVTFSSNEPKSWDRLTTVDSLVWNKRSQTTDTRTITTDNNLSWSLLSDLTATARLNTKRDLLQKDYLYDINIGKQTEYVQDLGLNYSPNYLPQVFNFTSSVSARYTDTQRKYTQYVESQAVDTYQRDGNTNRSIRMNLTLMNSSLLSNWAMKMKSKLPPESVSPKGKEDEGSAKTEMTEEDKKKQEEQKKREEMKKEEEQKKQEEMKKEEEQKLSEEEIQKRKDELARLEAEGKLADLSEEELNKLMEDIFGNGEKEEKTEEEEKETETTKPSETKEPGFNPVITLVNALAMLKNITASYQNTYMMNYARKTNPFPFSFQIGLPHTVPYDSLEAVSNDNTLTLGSGITFSRRVDSIINCSLMSNRRYASASNQTIGYTFPDITLSVMDIETLLGLGKYISGSRLNTGFQYTVRQNGNLDWVKPKQESYTYALNPLLGFTGNLFKVVSTNLSFSLSQTKNITDMDTYEILKTSNTQSLNGNISYSFRAAKGFSVPFTKKKIHIKNELTSSLGITYENNFDKTKGSTTSQVDRNTSRFAISPQATYQFDANIRGGLTGSYEVNSDKKTEDGTSIFSLGVWVEINL
>NC_020449.1|WP_044278977.1|1338772_1339591_-|type-III-pantothenate-kinase
MRNLLLQEPILVVDIGNTNIVCAIYLKGKSIWTVCLKSSRENTSDEYYILLGSLLESTTLPEGYKLGLKDIRYIVLGSVVPELTRVWKHLCSKYIQAEVYEINALSPLGISFRVDNPSFIGADLIANAYAAWQKYRTSSIIIDLGTATTIELISQEGMFEGAIIAPGIKIGAESLFSKAAKLYEIELVPPTALLGLNTTEAMLSGIIYGHSFMLDTFIAKIKEQYSQLKPFQTILTGGMSSLIKPYLSEINTIDKGLTLDGFYLALGKILNQ
>NC_020449.1|WP_044278978.1|1340279_1342460_-|adenylate/guanylate-cyclase-domain-containing-protein
MSRLRYFLIALAVLLISILLPELPVISILLRTLDLSIYDTILEVHNAITYSEYKGVYDQICIVDIDEKSIKELGQFSSWPSLFFADLVNILSADEPIAIAFDVFFTESDSIQGYARERLRPEFEGLTANPDIIMDALSTDDSFAAAIENAGMVYLSMFNSDYPSYTGVLPDKLTAWKVQPKHFLQLKYPIPPIPQYTNSARGIGFANIEPDVSGKIHDYPLFLQYNNNAYLNFSMQICLDLLGVDQIKVNRNCQLLSGENIVSELPLSPDGLFYFKYYGQGGPDKTFRYISFSDVLFHRIPPGYFKDRLILVGTSAYGLKDSKITPLDNSFPGVELHSTFIRNVLEENYVRWVDSRILLIINILALTIMAIFIPRSKPFVSISVFLFISLLSIPAVYLLYVKESYIYNYNYTLVPWVLGFLAMFITQAHEQGKEKRMVRDAFEHYVSPEVIQEIMKEPEKLKAGGEKKYISIMYVDVRNFTSFCEQLTPSEITGFMNNYFNRATQTIITHRGTLDKYIGDAILALFGAPVTYPGFEENAVKSALAIRQIVLNIKEEYKDHPVLKNFRIGIGIATGEVIVGNIGSDRIFNYTGIGDKMNFGSRLEGLNKYYLTTIIIDEYTYRAVSNTVFCRKLDKVKVKGKLNPCEIYEIIDTLENMQNKPELISAYRKYETALDLMLAGQKNQAKTLLEEVLAILPSDEPSRIMLNRCEIIDWDTWDGSWQFESK
>NC_020449.1|WP_044278979.1|1342474_1343146_-|hypothetical-protein
MKKTMLIITFAGIALCLFSASVGKIRFLVGEVQYKQSLNLTYKPATLNMEVEPEGYIKTGPDSKAEIQWNNGSVAVINANTQISISKLQSDALANPNYPNKLRERINNLRAQNEQREASQVAGIRREEAEIIPESELYWYSEPKYKVKDALNYMDIRDYTKAVEIFEKVIEQSPLDKDAELSHTCLIMIYDELGDKVNLQKHIKQLKEDFPDSSALDSLPPEK

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Crispr_ID: NC_020449_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_20

1389375-1389453

Orphan

Consensus_repeat	Method
AATAGAACGCAGATAACTGGATCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_20

>merge|NC_020449|20|1389375-1389453|CRISPRCasFinder
AATAGAACGCAGATAACTGGATCAACAGGATCAGCTGGATTTTGAGAATGACTAATAGAACACAGATAACTGGATCAAC

>NC_020449|20|17|1389375-1389453|CRISPRCasFinder
AATAGAACGCAGATAACTGGATCAAC	AGGATCAGCTGGATTTTGAGAATGACT
AATAGAACACAGATAACTGGATCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_018197911.1\|1381942_1382461_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225083
NC_020449.1\|WP_018197903.1\|1393142_1393970_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|372761
NC_020449.1\|WP_044278990.1\|1401102_1402440_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NC_020449.1\|WP_015424916.1\|1387136_1387967_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424918.1\|1388611_1389352_+\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|179615
NC_020449.1\|WP_157860011.1\|1383944_1384139_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424928.1\|1396569_1397673_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133035
NC_020449.1\|WP_015424927.1\|1396320_1396569_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424917.1\|1387963_1388602_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278987.1\|1394598_1396308_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NC_020449.1\|WP_015424929.1\|1397672_1399274_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|274111
NC_020449.1\|WP_015424913.1\|1384355_1385153_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424914.1\|1385278_1386445_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424912.1\|1383070_1383751_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NC_020449.1\|WP_015424911.1\|1382432_1382780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377773
NC_020449.1\|WP_015424919.1\|1389918_1390950_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_020449.1\|WP_015424915.1\|1386441_1387140_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424922.1\|1391264_1391705_-\|HRDC-domain-containing-protein	unknown	unknown	gnl\|CDD\|366173
NC_020449.1\|WP_015424930.1\|1399417_1400638_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|237600
NC_020449.1\|WP_018197905.1\|1390942_1391275_-\|diversity-generating-retroelement-protein-Avd	unknown	unknown	gnl\|CDD\|319868

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_018197911.1\|1381942_1382461_-\|ATP-binding-protein	gnl\|CDD\|225083	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].	1.29402e-09
NC_020449.1\|WP_015424922.1\|1391264_1391705_-\|HRDC-domain-containing-protein	gnl\|CDD\|366173	pfam00570, HRDC, HRDC domain. The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain cause human disease. It is interesting to note that the RecQ helicase in Deinococcus radiodurans has three tandem HRDC domains.	4.4311e-16
NC_020449.1\|WP_044278990.1\|1401102_1402440_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NC_020449.1\|WP_015424918.1\|1388611_1389352_+\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	3.65707e-41
NC_020449.1\|WP_015424930.1\|1399417_1400638_+\|6-phosphofructokinase	gnl\|CDD\|237600	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase.	0
NC_020449.1\|WP_015424928.1\|1396569_1397673_-\|glycosyltransferase	gnl\|CDD\|133035	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	5.47824e-98
NC_020449.1\|WP_015424929.1\|1397672_1399274_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|274111	TIGR02397, DNA_polymerase_III_subunit_gamma, DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair].	3.9358e-175
NC_020449.1\|WP_044278987.1\|1394598_1396308_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NC_020449.1\|WP_018197905.1\|1390942_1391275_-\|diversity-generating-retroelement-protein-Avd	gnl\|CDD\|319868	cd16376, Avd_like, diversity-generating retroelement protein bAvd and similar proteins. The bacterial accessory variability determinant (bAvd) protein, together with a reverse transcriptase, is involved in retrohoming processes as part of a diversity-generating retroelement (DGR), a type of system that is involved in generating sequence variation in bacterial proteins by inserting coding information from a template region into a variable region of a protein coding gene. bAvd forms homopentamers and interacts with the reverse transcriptase as well as with DNA and/or RNA.	3.41334e-29
NC_020449.1\|WP_015424912.1\|1383070_1383751_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	5.59188e-110
NC_020449.1\|WP_015424911.1\|1382432_1382780_-\|hypothetical-protein	gnl\|CDD\|377773	pfam07085, DRTGG, DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).	0.00010307
NC_020449.1\|WP_015424919.1\|1389918_1390950_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.93257e-41
NC_020449.1\|WP_018197903.1\|1393142_1393970_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|372761	pfam13860, FlgD_ig, FlgD Ig-like domain. This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.	2.35481e-06

>NC_020449.1|WP_015424918.1|1388611_1389352_+|class-II-aldolase/adducin-family-protein
MTKNKDSAMLFNDVFNNVLPFRNLIMRLSKIAKVIHQQGWAEANAGNISIRISNLLLPFIRTNSWENSYPYQDWFLVSRTGSRFRDFSDEPENCLMIIGIDKEEHYFPDTAKPTSEWLCHRKLQEMNKNTNVSCLLHTHPTEVIALSHTSVFQNNKQYPQRLNEYLFEALPEIQLFLPQGIAVADYAPPGTLELAEKSCESIQDKQALIWEKHGLLVLAENIDIALDLTEVINKAAKLWLLKGLKN
>NC_020449.1|WP_015424917.1|1387963_1388602_+|hypothetical-protein
MSGFMTTFGLWLSVFFTLSIFSFLYKDNPFYKLSEQIFVGLSAAYWLVYLYYSVMVPNLFNKLFTDFKGNLILLIPTALGLMMLLRLIPKAQWLSRYPIAIMIGTSAGINMVRYAKTDLLGQISATMINPFASDNVITVIGNILLIVGTICGVYFFYFSKKQEGIRAVPSKLGIWFLMISFGASFGYTVMARISLLIGRLEFLLKDWLHIIK
>NC_020449.1|WP_015424916.1|1387136_1387967_+|hypothetical-protein
MSANKNTQTERRIIYLVLLVAVALPLIFPIGWKTEVSSYTKMAWELIQNTPDSSVVVFSFDYDPSTLTEIQPMAEAMLEHSFSRNQKIIAVALWPQGVQMADQAFTVALKKYPEKKYGVDYVNLGYKVAGIVAIQAMGKSMQEVFPSDQSGTKYENIPMLKKVKTLKDVAYICSLSSGTPGIKEWVMAARDPLGTPVTGGTTAVSAPGLLPYVNSQKQLYGLLGGLKAASEYETLINKIGSATIKMDAQSIAHLLILVFIIIGNIKAFYSRKRGAQ
>NC_020449.1|WP_015424915.1|1386441_1387140_+|hypothetical-protein
MKYKIPLVFAFVCGILVVISEFIPHRPFNMLITTLQDWFMIISGFAILLGQISLFQANIKKIKEKNKDWPFYLAGLISFTVMLIFGLLWGTQEYRGIFGQGEKIQATVGMKPFDYLFANAFMPLSSTMFSLLAFFIASAAYRAFIIRSFESNLLMITAVIVMLGRTSFGGMLTSWLPEGLKFLHLPNLSDFIMEFPNSAAQRAILISAALGIIGSSLRIILGIERSYLGGEK
>NC_020449.1|WP_015424914.1|1385278_1386445_+|hypothetical-protein
MDFFELCGKLWFAILQKTKRKIMKKVILISGILFFSTLLFAQSTFFWIEDVPWDDGKALNIKANVPADTVYLQKALEDGTWETIYTGRGRSLSFTQNELNPDIKYRYRLLVPRPAFNDTIFFMAEAQPKEQWFYLHKLSYLLILLAVSIAIIYYVQNARKGKEYYIRRISGLDCIEDSIGRATEKGKPILFVPGIMDLDDIQTISSLTILSHLAHKAAEYDTEIIVPCRFSMVLSAAREVVKEAYIKAEKPDAYNQDRIFYLTDDQFGYVAGIDGIMVREQPAANFFLGSFYAESLILAETGFSTGAIQTAGTAQASQLPFFVVSCDYTLIGEELFAASAYLSRDPQQLGSLKGHDFGKLLVILLIIAGVITEMSGWHWFKAFFEGAQ
>NC_020449.1|WP_015424913.1|1384355_1385153_+|hypothetical-protein
MKKTVWLIIAIVILMGLVGCKKKEEKLPSQETASAITTYAPLPSFKEVFRVLDQLQVKDISAAVPADLYKTKQEEVRNAFSLGLLTADATLAAKGHNKKRLSQISSRMMDLTTLLGLEEEVNQMSAELKNLLEKEQWTELETALDTHKKKVEDKLWEMESFDNYTLLLLGGWIEATNRVAWLIKQDYSAEKTKALNQKGTFNSLIGNLKNIKAEHITSQPEFQEVLGLMEQLKAVIDADKEKTYTPEQLDQIISLTNQIKETFKK
>NC_020449.1|WP_157860011.1|1383944_1384139_-|hypothetical-protein
MKGKLPSGFQTNRIIWAKTNRRYLTVMPPEFLLQYMIKERRNNVYYYFYSLSSNSITEALLTHY
>NC_020449.1|WP_015424912.1|1383070_1383751_+|metal-dependent-hydrolase
MKLQYLGHSAFLFSDSQNRTILIDPFLTGNPLAPVKASQVKADYIILTHAHSDHIGDALTIADKRKTTIICVVELASIISKNGYNTHPLQIGGAFQFPFGKVKMVTAFHGSATSNGLYAGLAAGVVFKLDHKTIYHCGDTGIFGDMKLIGEIDKIDVLLIPIGGNYTMDIDDAVRAVSLIQPELAIPMHYNTFDLIRANPQEFVDKITANGFAGKVLKPGEELQFS
>NC_020449.1|WP_015424911.1|1382432_1382780_-|hypothetical-protein
MTLRDIVELLEAEVLYEGADLNREVPCAFASDLISDILMCTKEPTLLLTGLTNNQVIRLADMIDLIGIVFVRGKKPMQDVIDMAKERGLPLVATNMTLYRSSGILYNAGLRSCRI
>NC_020449.1|WP_018197911.1|1381942_1382461_-|ATP-binding-protein
MQDSAVAEFEMSEYWYIKPDFEEKVQDFFAQKREPEVVLELDIPGKDFNIAGKGSSELKNLLKRLGVDSEILRRIAVAGYEAEINVAAHSQGGKMISNVFDNLIYMQFMDNGPGISNIQQAMTPGFSTADDLVRELGFGAGLGLPNIQKNSDALHITSALNSPTLVEIIIFF
>NC_020449.1|WP_015424919.1|1389918_1390950_-|RNA-directed-DNA-polymerase
MPKRVGYLWEKLTSWQNLYLAYKNACKHKKSKYETAEWMFYCEKNLWELQKELINGNYRPQPYRYFTIKEPKERLISVAVFRDRLVHHSLINVIEPYFESIFIKDSYATRKGKGLHLAVLAVQKYSRQYPWFLKLDIEKFFNNIDHNILLKLISSKIKDPMIINLCSIILKNQNLSMNHNEEIGLPVGNLTSQFFANIYLNQLDHYIKQNLGYKGYVRYMDDFILFSENKDKLKSDLLLIKYFLSNILKLKIKDKSIQMNKVNQGIPFLGYRVFPKLIRVSNINLKRCLQNMQKREKEYIRGKIEIEKLYQSTRSRLGFISFANTYYLQKLIWGGVHKAEPTV
>NC_020449.1|WP_018197905.1|1390942_1391275_-|diversity-generating-retroelement-protein-Avd
MKNDYPLYIKWMDISIWIFGRTERFPKNLRYSLAQKMDNLCLEILELIVQTIYSSSKREYLIKINIKLDVLRTLIQMAYKMKLLAENQYQYISKELLESGKMVGGWLKSA
>NC_020449.1|WP_015424922.1|1391264_1391705_-|HRDC-domain-containing-protein
MFKLMLVRFDRDKGVFEDQGFNQFCQNNNIIRVEKEFINNEGNIYYSFFIEYLPRKGSHFIPDMESLSELEQAQYEKLRDWRNELAANEGFPAYIIMYNSQIYEIVKKQPKTISDFSSIKGMKSKAEKYGEQIIKLLQEAVLEIEK
>NC_020449.1|WP_018197903.1|1393142_1393970_-|T9SS-type-A-sorting-domain-containing-protein
MKKESIFLIILLISGSIFALTGYGESSVVSITGIPCQHLSGLGESSVVSITGIPCQHLSGSGESNEFAITDETLPVELSSFIAEQSGGSSVRLMWATQSETNLYGYRIYRSTNEELSQAQMLNILINATNTSQMQVYVYVDAEIYSPGIYYYWLEMIDINSVSQFKGPISVNVIIPEGNDEIPLITGIDSIYPNPFNPGTWLSYSLAEESKAILEIFNLKGQIVWNKVIPNQSAGRYKYFWDGKNQNGITCTSGLYFFRLTTNKTNYIAKMILMK
>NC_020449.1|WP_044278987.1|1394598_1396308_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MDTKENITENKEEKAVTSNFIRSIIERDLASGKHKSIVTRFPPEPNGYLHIGHAKSICLNFGLANDYRGRCHLRFDDSNPVKEDVEYVNSIMEDVHWLGFDWGEHLYYASDYFDKLYEFAEYLIKAGKAFVCDLSWEELKEYRGTLTVPGKDSPYRNRSIEENLDLFRRMKAGEFPEGSRTLRAKIDMASPNLNMRDPVIYRIKKTHHHRTGNDWQIYPMYDYTHCVSDALEGITHSICTLEFEDHRPLYDWFLDQLPVPCHPQQIEFARLNLAYTIMSKRLLLELVNNHLVSGWDDPRMPTIAGMRRRGFTPEAIRDFSERIGVSKANSLVNDELLMFCVREDLNKRAERRMVVVNPLKLTITNYPEGKIEDFAAENNPEDPSAGKRKIKFSRHLYIEKDDFSENPVKGWFRLSLGKEVRLKYAYYITCNEVIKNEKGEIIELLCTYDEKSRGGWTEDGRKVKGTLHWVCAESAIPVELRLYDRLFTLADMSNMEEGKTYQDYLNPNSLIVKQNCLAEENLQEAKIGEHYQFLRIGYFNVDYNSKPGALIFNRIVDLKDSWAKLSKKI
>NC_020449.1|WP_015424927.1|1396320_1396569_+|hypothetical-protein
MVYKIVLVKIDQRSTEATKVQGILTKYGCNIRVRLGLHEVSNEFCANDGLLVLEVQGEQNILENMISELNALEYVQVRLIEM
>NC_020449.1|WP_015424928.1|1396569_1397673_-|glycosyltransferase
MKKCFPLFTILYSTFLIWLKRGVDKIIAEEKKKSVPDIFQSISIIIAARNEIKNLPNLLNSLACLDYPRDKYEIIIVNDHSNDGSKEYLATQKNIPNLKIINFYSETPPLTGKKAALQKGIENSRFEILAFTDADCIVPVSWLQEINRSFTKETDYLLSYSVIKRKPDDSIIRLKNFERSVNYALAAAGLYYKIPFTSSACNMVYRKKTFLESSGFEGIGHLRSGDDDLLLIKMMPKIRKAAYNPNTAMQVTSIDGTNRKKHHQTNIRRASKFKYYPWWLKGLCAFIFIYFCLFYIALWQAIHKKSGKAIKLSLLLKTAAEFAFSYSHLRQIGRSKLAFLYPLQIFVFPLHFIFYGLRGTLGKYTWK
>NC_020449.1|WP_015424929.1|1397672_1399274_-|DNA-polymerase-III-subunit-gamma/tau
MSYIVLARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSLNCVNGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLYPASSSNYKIYIIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRIPIASIVQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCLNNITIDKVRQIFGMIPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQEFVRILILRKLQVQIKDINPDELSLFDELAELFGQNKLLYILSYLIACRNDLRGSSNPYLILEALMIKLCKLDEMEDIASLIGKININAFAQPVSMASPTTAKTIQSSYVASSAEVPLREETIVAKMEFNQENLEQLWQRIITRAKKISQMCALALDATTDRKVEGRKLCLTVESNTNFRCLKSNQEKLEESISELFEKPISISLQLQETEPPTKVNIQHKTLEDIKQENPELAKFIDLTDSVLVKS
>NC_020449.1|WP_015424930.1|1399417_1400638_+|6-phosphofructokinase
MKLEGKVVIAQGGGPTAVINQSLVGVTLEARKFPQVTRVYGALYGVQGIVNEEFVDLTQETTHNLEQVANTPSSALLSTRDKPDEKYCMEIFKVLKAHDVRYFFYIGGNDSADTVRIVNEQATKADYEFRAIHIPKTIDNDLVLNDHTPGFGSAARFVASAFTGVNLDNRALPGVYIGVVMGRNAGFLTASSVMAQKYPDDGPHLVYLPEHPFHRENFLDDVKRIYDLYGRCVVAVSEGIVDENGVPIVTKLSGNQEKDAHGNVQLSGTGVLGDLLSELVRTKLKIKRVRSDTFGYLQRSFIGCVSDVDQREAREVGERAAHYAIWYNLDGSISIQRTGFYSVNYQLENLSDIAGKTRTMPDEYINAEGNGITDEFKYYVRPLLGSGFPVAHRLRAPKVAKILTEK
>NC_020449.1|WP_044278990.1|1401102_1402440_+|NADP-specific-glutamate-dehydrogenase
MTINEFMAKVEAKNPGEPEFLQAVKEVVETIWDVYINNPRFVKANILERIVEPERVIIFRVPWVDDKGEVQVNRGYRVQFNSAIGPYKGGLRFHPSVNLSILKFLGFEQTFKNSLTTLPMGGGKGGSDFDARGKSDGEIMRFCQSFMTELFRHIGPNTDVPAGDIGVGAREIGYMFGMYKKLMNEFTGVFTGKGLTWGGSLVRPEATGFGVVYFTEEMLKTKGETIKGKRVAISGFGNVAWGAVQKVNHLGGKVVTISGPDGYVLDEEGISGEKINYMVELRASNNDRVKDYADKYPNAKFFPGKRPWEVKVDVAIPCATQNELNGDDARALINNGVFCVTEAANMPCTPEAVEIFQKAKILYAPGKAANAGGVATSGLEMTQNSIRMNWSREEVDEKLHGIMKNIHQACVDSGKEPDGYINYVKGANIAGFLKVANAMCDQGIV

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Crispr_ID: NC_020449_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_21

1426599-1426738

Orphan

Consensus_repeat	Method
GGAAAAAAGTTCCGGAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_21

>merge|NC_020449|21|1426599-1426738|CRISPRCasFinder
GGAAAAAAGTTCCGGAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTGGTAAGAAAAGAACCGACAAAACTATATTTATTGGGGAAAAGAGTTCCGGAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTG

>NC_020449|21|18|1426599-1426738|CRISPRCasFinder
GGAAAAAAGTTCCGGAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTG	GTAAGAAAAGAACCGACAAAACTATATTTATTGG
GGAAAAGAGTTCCGGAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424954.1\|1432982_1433699_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NC_020449.1\|WP_015424956.1\|1434216_1436265_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NC_020449.1\|WP_015424955.1\|1433695_1434220_+\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|377839
NC_020449.1\|WP_015424942.1\|1418956_1419136_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NC_020449.1\|WP_015424957.1\|1436283_1437453_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133035
NC_020449.1\|WP_044278994.1\|1425778_1426426_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044278993.1\|1425108_1425768_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424940.1\|1415882_1418015_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|379396
NC_020449.1\|WP_015424943.1\|1419746_1420772_+\|PorV/PorQ-family-protein	unknown	unknown	gnl\|CDD\|367457
NC_020449.1\|WP_044278995.1\|1427011_1427485_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_020449.1\|WP_015424939.1\|1414049_1415657_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|260116
NC_020449.1\|WP_044279238.1\|1432639_1432996_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
NC_020449.1\|WP_015424951.1\|1430676_1431942_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_020449.1\|WP_044278992.1\|1424152_1425121_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015424949.1\|1428084_1430217_+\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|224397
NC_020449.1\|WP_015424950.1\|1430209_1430674_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|376735
NC_020449.1\|WP_015424938.1\|1411257_1414056_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NC_020449.1\|WP_044278997.1\|1432007_1432643_+\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635
NC_020449.1\|WP_015424941.1\|1418250_1418700_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_020449.1\|WP_015424944.1\|1421000_1424135_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015424956.1\|1434216_1436265_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_020449.1\|WP_015424955.1\|1433695_1434220_+\|Gx-transporter-family-protein	gnl\|CDD\|377839	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I. This family contains component I of bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	2.74387e-20
NC_020449.1\|WP_015424949.1\|1428084_1430217_+\|HDIG-domain-containing-protein	gnl\|CDD\|224397	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only].	1.76979e-117
NC_020449.1\|WP_015424957.1\|1436283_1437453_+\|glycosyltransferase	gnl\|CDD\|133035	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	8.94195e-63
NC_020449.1\|WP_015424954.1\|1432982_1433699_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.7461e-93
NC_020449.1\|WP_015424940.1\|1415882_1418015_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|379396	pfam13861, FLgD_tudor, FlgD Tudor-like domain. This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.	5.33487e-06
NC_020449.1\|WP_015424943.1\|1419746_1420772_+\|PorV/PorQ-family-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	0.00415355
NC_020449.1\|WP_044279238.1\|1432639_1432996_+\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	2.33655e-10
NC_020449.1\|WP_015424939.1\|1414049_1415657_-\|(d)CMP-kinase	gnl\|CDD\|260116	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. The 4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) reductase (called lytB or ispH) is the terminal enzyme of the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway, one of the two metabolic routes for isoprenoid biosynthesis. The MEP pathway is essential in many eubacteria, plants, and the malaria parasite. LytB converts HMBPP into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).	8.56737e-118
NC_020449.1\|WP_015424944.1\|1421000_1424135_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	5.28446e-11
NC_020449.1\|WP_015424951.1\|1430676_1431942_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.71582e-114
NC_020449.1\|WP_044278995.1\|1427011_1427485_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.37519e-32
NC_020449.1\|WP_015424942.1\|1418956_1419136_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	5.14363e-07
NC_020449.1\|WP_015424938.1\|1411257_1414056_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_020449.1\|WP_044278997.1\|1432007_1432643_+\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	0.00348208
NC_020449.1\|WP_015424950.1\|1430209_1430674_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|376735	pfam02130, UPF0054, Uncharacterized protein family UPF0054.	1.18907e-21
NC_020449.1\|WP_015424941.1\|1418250_1418700_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.97933e-09

>NC_020449.1|WP_044278994.1|1425778_1426426_+|hypothetical-protein
MKRFGIFLLIILLSTSLFAQSRGILTLKSFAVPGWSQISSNRNYGYAMLTAEAVIIGSIYYFHSESKVLEQECYEYAIKFAHLNPDGYSEEFYKQLARYESSGFDAGGYNNWVRQTAMNLYPDDPESQQQYINENAYGNDKYWYWDSSNHRSEYNKIRNRSMDYDNYALVAGGILILNHLVSTIDVLRWTAPPKKANLSFNLQDKTPILQINYHW
>NC_020449.1|WP_044278993.1|1425108_1425768_+|hypothetical-protein
MDFLKRKTCLIILLLLWGIIPLLALPKFVYPVSSLILPGTGELLLGHNTRGATLMGVDLINIYAFIATGREIEMQKKNFMKFAELYAGVPYGMPDEHYQAVQNYPNSDYYNDIQEMMARNYYLIYNYDPESFAEYISANTYQGNEEWSWQSEEKWEEYKNLRKRHQKTKMNNQLALGLMLLNRGISIIDSSILSKKKHGEFYLAPLPANGAMLNYQIEF
>NC_020449.1|WP_044278992.1|1424152_1425121_+|hypothetical-protein
MKKFILLIFIAGFAFCLFSQEKPKTDIDQWLNQTEEEQQNAMRDSVVTNDLIKINYNRKNAQLAMAMSMLVPGAGQFYANKTVLTTYIFPVLEIGLIGGLVYFNNQGKDKTKKYEKYATGEIVTYITPDGTKITGFRYDRSRQDEIQAILIGVNEHDIYDNGYFRLDKTNSQHFYEDIGKYPQYVFGWMDWYYRFACNESGVRDSIRWKFDGENDSPNMRWTGNYPLWGNDTETLIPIDDHEMSRMRQTYIKMRNDAKDSYSMAHFFTLGLAFNHLAAGLDAIRVTRNFNRYYISQSVPALNFYAAMPLGNVTPMLGLKWTF
>NC_020449.1|WP_015424944.1|1421000_1424135_+|T9SS-type-A-sorting-domain-containing-protein
MKKNTILIFFVLVAALLSAQKMFLQKGQQFQKLAEHPYQNQLIQYNFRQDLLKKDKTNFNRLLVILVDFAEEYPDDPNTTGKGKFQLEPDSTYIYSVGAPPHNREYFEANLEALKYYYLAVSAGAYELHYDVYPKNIPAYTLPQSMGYYNPPGASSELFVSRMEEYFKTALETADSIDEEIDFGSYGHYMIIHSGSDWQHDIMGNTPSDLPSFFIKVGDGKEAVVDNGTVLISHSCNVPETISQDFYENEENGTIIHSGYGALNAVIAHEFGHSLGMVDLYNVYNSSPMVGVFDIMDSGGSGILIDELDNGDLVYVEGALPTLPGAFSRNLMFRDSYLERGLLKEFPDFNTMTELSLSAISAMQNGNDLIPHIYKIPLNSKEYILVENRNVDPDGDGGTAVFGALDGRVILYPTPFEDISPPPPTYEYDYLLPSFMKANGSAIGGGILVWHINEAILYDEGQTDSSGNWTSNFDANTVNTGFYHRGVSVIEADGLPDLGSDYSMYWTGTPYEYFHKYKPILDTNGLFVNWSQEPWKPELTAVTKPPLVDSFNVPGLYHLKEIGNPAKKMSFKVESGSFDTTQIFDYSASSFIIGPIIKTGFNEDNIPVLIDNKMFLLSYWDNEWKDIIGEFVTNFPRSDYPLQKVDLNTDGYFELVWAKQNTLVLVDWSLDTPIFHQISFPDSITTTPLPVNNTLIVTTKDCIYAVKNFAIQSFIGLQGAKCIAGYDDTIIVLGTDFLATLTLDNLDKFNEFTLPEPCGNIELLIYTNPDKTIEMIFVMANSGNLYRIYQNRLELIFANHSKEKPGQLACSSLGDISPVLFFGIGNKQYALKADGTKLTHFPVIAPKTISPCETPFALKNGSAEILFYPLAETGYLAIDKMGRIVPEMCLSVNKDKKNDYLYYQPEQQILNWYYPDSTGRLFIHSKKNIDTNPILFAGYRNGASGCATFAFRDESISSTEKIAYIYPNPVRKPYYKLNLQNYFGETKLHLYDISGTLVKKMIIPESNNNPRDFELNTLGLSSGVYIMVLENNGSTKHLKFAVEK
>NC_020449.1|WP_015424943.1|1419746_1420772_+|PorV/PorQ-family-protein
MFKRHAIVFSVLLMLILPFALSGISQATMLFLTFEPGARANAMGRAYSAIADDAYAMWWNPGATAFNKQTQIAATHIPWLQGSGVDDIFYEYLGFNNYFYGIGNINAHIIWLDEGTQPQTNAQNVELGDFHTYEVAGALGYGYEVVPEKIGLGGNFKLLYSYLGPGTGLTETEGSAFSFAFDVGALFKDVVVDNLNASVVLQNIGPDITYIDEEQSDPAPLTFRAGLGYKIFDNPMGRLIATAEMSKILANEDPLYERFITGWKYFDETIYGVGAEYTYLNLISLRGGYFSDKAGEVEGASFGVGVQYKFSKRYKLGFDFAMVPAGGMTNYNKIFSLGFEF
>NC_020449.1|WP_015424942.1|1418956_1419136_-|winged-helix-turn-helix-transcriptional-regulator
MIFLVTHNPKIRYSELARITGKSVATIKRLISKLKKDGLIKQSGSPRGGEWILTRDENS
>NC_020449.1|WP_015424941.1|1418250_1418700_-|GNAT-family-N-acetyltransferase
MLNLQVIYKPDELPENISQKDLVDFLYTHLESFGDAPSAINKAIDYAFSTEKGKGGFLILAFAEDKLCGVLVMNKTGMEEYIPENILVYIAVEKSMRNMGIGSSILKKAREIADGDIALHIEYDNPARHLYERFGFTSKYAEMRWQKKD
>NC_020449.1|WP_015424940.1|1415882_1418015_+|T9SS-type-A-sorting-domain-containing-protein
MPYKNNMKIRHYCVKCLIAIAIFAIAATNLFCYNTGDYRTKWGGNFETLELWECYNGIGWIDATQLPSSPFVNTIYISNQTVTMNSSMIIEGGLVIVGTLQLASGAILTINPSVNCEIGVIETYSGSKLINNGFITANSSSSSLKVHGGILENNGIIASSAPNNCNVYINSNGRINFGNQGSITGNCSFTTNYGSIIATANTQGLDGSLNCSGDISFNQIYLIYNGTEPQITGMKTPDQVLGIDFNNPAGITLSKNIKLIYTALVHSGTTLYFDVSIIKEAWYGSGTFSMEDGSTIATANPDGFCSTGNKGSVQVGTRNYNSNSNYIFNGTEHQQTGDFNPTPTAYTVNDIIFDNPAGVTLTHPITVISTLELLEGDINYAVLPQGVDGFYSPDVKKTVIPKNGTLMYNFLADSLPFQNNGEYVNRKWYLKGNFNGSKKVTFYWSENEDDNCNWNVHNFPKVYLSNSNEPLNTIWNPAHPREISFIAHSFPNAKEDVYYYIGKERDDTLPVTLSSFSLTQIGISTVRITWVTQSETNIMGYYIYRATQSDLNTASNLNYLIPATNSSHLQIYTYTDQVTSNNIYYYWLEIVDYDGYNSFYGPAVIEINDNGNQTPSIPVKAGFYSFAPNPFDSGTKIFYGIPSKSPVLMQVYNIKGQKIRTLLNETKDSGNYDLFWDGRDEKGNLLANGNYILRLFASGSSWTKKITILH
>NC_020449.1|WP_015424939.1|1414049_1415657_-|(d)CMP-kinase
MPKRKIIVAIDGPAASGKSTTAKELAKKLGYVYLDTGAMYRACALQAMRGGISLNDISSIVLMLEKIDIQISYTEEGNIIWLNGEDVSQQIRTPEISSSASAISAIPAVRYKMVELQRKLGKNGGVVLEGRDIGTYVFPEAEAKFFMVADLEVRAKRRFKELAEKGIKTNYIDVLKELKERDEADANRSLAPLKPAEDAILIDTSNLTIEEQVHKLYEITCRIIEKIDNNNSDKELGERKIKIRLANYLGYCFGVKRAIQMAKDAKVTEKPVYTLGELIHNPAIVQELEEQGIHIVNKAEEVKNSTVIIRSHGITKEEYKILKENNNEIIDATCPYVKRTHTILKHLVKENYPVLILGDKQHQEVIGIRSYGNEKTFVIGEDDPIPKIKEKRLAIMAQTTQRIEKLQELVYKLLSNFNELRVFNTICLATTQRQKAAEELAQESDAMFVIGGLKSSNTCALAKLSSVYCPTYHIEDEKQLASIDISPYKCIGITAGASTPEEMIIKVYNVLLQKSGDFKTVTSIEEIPMFKEESC
>NC_020449.1|WP_015424938.1|1411257_1414056_-|30S-ribosomal-protein-S1
MLIHDQNTVPPESKETENTNPEVETVLSVGEDEMSKFTVEEEIKEEETKEEEPSIAIPEEMLSENPETAVSEEAKPEEPAPSPEPEQEKKELTQEEKEHQEMLSMYEESFSSFKKGEIIEGTVVDITDKDVRVDIGFKSEGIIPISEFAYTGIPELNSVIKVYINEIENGEGKLLLSKKKADYMINIERIKQAFADKSSLSGIIRRRVKGGMIVDVLGIEAFLPGSQMSLKPIPNLDQFIGKELYFKVVNIDEEHHNIILSRRQVLEEEAEQKRQELLRKIQIDAELDGEVKNITQYGAFIDLGGIDGLLHLTDMSWGKLNHPSEMLQIGDKVKVKVINFDPETNRISLGMKQLVPHPWENIEIKYPEGSRVTGKVVNLKPFGAFVELEPGVEGLVHISEMSWTKKITDAHKFLKIGETINAIVLDIDKENKRISLGMKQMEPNPWLTIEDRYPIGTILTRKIKSLTAFGAFVEIEEGIDGLIHISDISWTKRIYHPREVYKKNQEVEAVVLSIDRAQHRVALGVKQLVPDPWETLDQSLPINTEVKGKIGKLIPKGVLVDIPVNNDVVEGFVPVSHLAIPKLEHSEDAFYIGEEIPLKVIELDMENRRLILSVKAFFFSRDPKLQEEYIALHEQYMREKVARQQKKKQEKETREKKFAQKKEQEETTKPEEKEITPPKTELIKEEIQETIGLKEEKITEPEQTITEEIQSKIEEQEETKETEKEEEIIPEIKETETIEIPITEEHEPVEMPGEEEPEPIEIPVIEEPEPIEIPVIEEPEPITTEEIPVEIEAEEEKIETEEISVEIEAEEEKAAEEIPVEIEAEEKIETEEISVEIEAEEEKAAEEIPVEIEAEEKIETEEIPVEPAIPEPEHIEPEEITIIKETSEEEREAEKTEKEREESETIVIPVTDETEEKKSEPLATQEETQKED
>NC_020449.1|WP_044278995.1|1427011_1427485_-|flavin-reductase-family-protein
MIQLSELPVSYGKIHLPAKVALVVTQKPESGYNLITIEWFMRTSLQPPMFAISIGKTRYSHECLEANRYFNLVFPSLKMKPLLTLCGSNSGRDMDKFAVGKVEYIAGKLHKLPVLKDAVACFECEIVSQIRSGDHTIYIGEVHYCWQNPEEELFYYQ
>NC_020449.1|WP_015424949.1|1428084_1430217_+|HDIG-domain-containing-protein
MTEKLYCKKVKIMNSKYILYCIVTALIIVGIYQIVAVGRVNYPEYNLKEGQVSEVEIIAPFDFPVLKSPQELAAEKEQVLSQVDKPYEISEEPLFEAISNLDNIYAVLCSIEPTDDWEKIASDLKRAGYSFSPEALEFTLRSSLRDKIYESLRRELGTLYNQGIYESLEEDSILIWQNDNPEKRALSDFLPREKAKEILIDKFPEAKTFVSEFTEQYLKPNLLVNEEKLNELNQSSLQTVQPSEGMVLKNEVIVRKNSRVTEEEVRKLESLQEAYKRQKIRKSPLQEMFLSLGLLMFIFVVIFLANHYYGVQSKEEKIPVADFLPVNLGFIVLVILTVLSNFVLSGSNLIIPFAMIAIAGAILVNFEFGLLYSVCNILVISPFLNWETFTPVIMLLSTIICLLILRRQKVWHEYLMIWLYLLISLLVVIICLGIYKRDSIITIMRSIGYAFISASLSITGILLIVPYYEKKWNRATKQTLLELLDFNHPLLKRLATEAVGTYHHSLVVGNLAEHAAEAIGANPLLARVGSYYHDIGKIINPEIFTENNEDSGEIHSQIEPNESAQLIRNHVTEGIALAKKYKIPQPVIDIIMQHHGDMIIRYFYEKANKEGKELDANAYRYPGPRPQTKEAALVMLADIVESTTKAKEIESETDIAKIIDDTITYLLKEKQFDEAPISMKDLKIVKQSFIPVLESIYRKRLDYPEAQKDE
>NC_020449.1|WP_015424950.1|1430209_1430674_+|rRNA-maturation-RNase-YbeY
MNSLELIGETIIPESEQEKIAELICSQEDPEHSYQICVKTVDSETMKHYNKRYRGLNETTDILSFITADLPACAIEERDEEDGFSAKPVRICDIIIDIKRLFQQKGIRTLEEEYRAVLIHGLLHLVGYDHIRSADAEKMNKKEEYYLKQTQGEI
>NC_020449.1|WP_015424951.1|1430676_1431942_+|HlyC/CorC-family-transporter
MDDGKAFIIIVLFALSAFFSGSETALFSLSRIQLKRLENNNKSSAKRIIKLLSKPRQLLITLLLGNTFVNLAISSFGTLLALQIGTKYGYTESSVVTVQIIITTILILFLGEITPKLIALSKADSLSKILSLPLLGFRIIFFPAVWVLEKISELISKRKAVDQYIGTQFTHEEFHNLLQSESSSHSLEEHEKKMLVGLFRFKEAEIKEIYVPRVKITAIEENKDLEELKQVIIDSGYSRIPVYRGTIDEIVGIIYVKDLLLYPEKKTIKELMRPVWFVTENMKVQALLNQFKQKKLQIAVVVDEYGGTSGIISLEDILEEIVGDIRDEYDKDEIPELIKKDENTYIISGNFSVRQFNEDFSTEISVEDYDNIAEFLLAYFNNVPAIGATAKYDDKLEFTVLDADEKSIKQIQVKIKPGELS
>NC_020449.1|WP_044278997.1|1432007_1432643_+|DUF3108-domain-containing-protein
MKALGIKLVDISIQISENEPVIEIKAKSLKETAISPQINNIYRIEHNGSYQPITYTRVIRQKNVNDKVIVNYNHNSSQATMIRLSDNSTIQYSIAKNSHDVYSFLAEIIAGRVQTGNYPIDANGINWQAKVVQLASETVDTPLGKYPARHYEITFHNLTEKKMPYIDMVTFNMLQENNKLNLWVYNNQYAVKATFKKKGLSSCWELVNIKK
>NC_020449.1|WP_044279238.1|1432639_1432996_+|VanZ-family-protein
MKFFRTIYPTLIWFCLIWILSSLPSQHIPSVNIIGFDKLEHIGIYAILGCLLGYWLIFKDWKLTTVILIYVFLLLLAGLDEYHQNFIPGRDVSLYDFMANSTGIIIGFLFYLHKYDRS
>NC_020449.1|WP_015424954.1|1432982_1433699_+|ATP-binding-cassette-domain-containing-protein
MIEVEKLCVSLNDREILVDISFTLDNGNNLVILGRSGSGKTVLIKTLLGIYFPVSGSVVIDGIDIHRSSEDQRKTTKKRFAMVFQNAALLDSFTVLQNVALPLYERGEKDTALIKDRVHKCLQMVGLENTVNLYPAQLSGGMRKRIGIARALVYEPNYIIFDEPVSGLDPITSREIMYYITRIVETASATLITITHELKDIQTIANQVLFLNEGRVIFNGKTSDLYQSPNPLVQEYLQ
>NC_020449.1|WP_015424955.1|1433695_1434220_+|Gx-transporter-family-protein
MNIHNKSKLTQLAFYTALAASIHIVEDLIMRMLPLPFLRVGFSNIVILYLICHNRIGEAFIVNISKTILSGIVTLTLLSPSTLLSLTAGISAIIVMFLVRCLHLGLGIYGISICGAIAHNLTQLAMVRAILIHSDKVFVLTPILLSIALISGSIIAYLTLYIDRKSEKAEIKER
>NC_020449.1|WP_015424956.1|1434216_1436265_+|PBP1A-family-penicillin-binding-protein
MKASTKEKLYSVLKYLWFAFCFITGIFVGALWFYHDSLPPTSELRNYTLRSGSEVYDRNGKMVYLFAFEKRKLVSLKELPQYLIDALIITEDKHFYHHFGIDILGNIRALAVDIVRLDFSQGASTITQQMARNMFLTLDKRLSRKLKEIILALRIEREFTKDEILEIYFNKIFWGGQIHGVETASLYYFGKHARDLTLAESAALVGMIQRPNYYNPAKHPERLIERRNMILGKMLKAKKITQEEYNEAVASKITGDRSSLQQYSTDYYIEHIRLYLERKYGTEKLFEGGLKIYTPMDVDLSVYADSVLNRYLSNVEKGYPASMRYDSVPKNSVDINTRYLQGGILLMENSTGQVLAMLGGRNFTHSKFNRITQAKRQPGSAIKPTYYTAAIEKGYTPATVINDAPITLTGGNGKDWTPQNFSRKYYGPSRMRTAITYSYNVWAVKTVMDLGLDVVNDAFRRFGIDAKAEDYSAALGAYEVTPINLISAFTTFPNNGFRTKPVFITKVEDVNGKVLERSSTAKYDVTTPQVAFIMTSLLQSVVTSGTGAAARNNYYWQAAGKTGTSSDHRDAWFIGFNRKYTLGIWNGFDNNAAISASASCAPIWGQIMTKAIRNENKGRLPKSDDPRYSFVVPDKIVKRTINPKTGFVSEYGIEEYFIEDNIPPARSDTLSYNYYPTRWENP
>NC_020449.1|WP_015424957.1|1436283_1437453_+|glycosyltransferase
MYNILFYILCVLVSTGCITYLVLCIRFVYGFKHYKPVFSFKKRTVSVVIAARNEAKNLQDLLLCLLNQDYPSELFEVILADDDSEDETAEVANKYIEAGLNLHYLKITGRENVLSPKKKALEDAVYTAQGEIILSTDADCIVPTTWISSMVSLFTDDVSMVAGYSRTLLPDWKKASLVQKYEHLDYALSYIALAGCYTIGKSWACVGQNLAYRRSAFYDVGGFSKIKHLLSGDDVNLLQLMRNKGYKIIFNFSPSSFVYTQPIQSWKQLINKRSRWTSNMKYQLKFNPEFYFILFSLACLYWGGLIMLFFNYKLALFILAYRIIIENIIFNFPRSRFGITKEIMKFYPVWLIIQSFFLVFTMILGQFNIFVWHGKRPNNKRNKNANRNL

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Crispr_ID: NC_020449_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_22

1486615-1498952

TypeI-B

I-B

Consensus_repeat	Method
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	PILER-CR
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CRISPRCasFinder
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CRT

166 spacers

cas4,cas2,cas1,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_020449_22

>merge|NC_020449|22|1486615-1498952|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTCTCGCTTAACCAAGTTGCCCAGCCAGTAATCATCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGCTGAGAGCAGATACCTCTTCGTATTTGCTCTTGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGTTGTGGTGTAATAAGTCGTTATTTATTGATGTATAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCCGCATTTATCATTTTAGTAAGAATGAATTGCAAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCTTATTTCCCGATTTCGCAAACCGAGAATAAGGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGAAGGGCGTCAAAGCTGCTATATCTTTGAATTTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGAACAAAGATACAGGTCTTTATGCACGCATAACAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGGAATTTTAAGTTGTGTAAAAATTAAAGTCTTTTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATAGGAGAAATGTTCACTCCTGCTCTAGAGAGCGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTTGCCCCTGCTACTTGATAGCGTATTCCAATATCGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCAAATCCGGTATCACATTTGCGGCAATAAATTTTTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTATATAATTCAGGTTGTAGACCCGCACGATAGCAGACGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGCAGACAAAAAATCGGATAATGAATATGAATAGAAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACAATAGAATTGGAGGATAAATGAGAAGGTTAATAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTAAACTCTCAATTAGGGAATCATAATTATTAGAAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGAAGAGAAAAATAGATATAAGCAAATCAGAGGATAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACATAGGCAGCAGGGGTAAAGACAGTAGTATCATGATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGCAATTCACCACGGAACACAGCAGTTGCCTTGGCATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAAAAGGTCTTTCTCGCATCCCTTAATTCTGATGGTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCACTTCTTATGGCTATCCCATCAGCTTCTTCCGTGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATGGAAGGTCGAGTATCCATTTTTCAATTGCTTTAGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCTCATTATCCCTCACCTCCCATCCGATGCAATTCTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTATTCACAATGAACTTTCACCCTACTTATTTGCCCGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTATTTGTGGTCATTGGTTAAAAGAGCCGGCTGGGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCGGTTCTTCCTTCACTATGATGTAGTCAACCATTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAAGACCGCTGGGTTTCCCAGCGGTCTGTAGATTCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGCTGACTTTCGTTCTCGCGTTTTCGCGAGAGAGGACGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCCAATCGCCTTGCAAATCCTTCACATTGGGCTCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCGCCTCTCCCACCGGAAATACCCGTCCATTCATAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAACTATTGTAAGTTCATATTTATAGTCTTCGCTAACATTGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACCGAGTAAGAGTGATATTCGGGTCAGCTCAAGATTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTGATTTGTGTTATCCACAATTTCCAAAATTTCCTCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCATAGTGTTGTGTAATATGATTCCAGGTTACATTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACCATATATACGCCTTCGCACAGTTTACCACTAATGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATCTTCCCAGCGATCGTTGCTGGGGAGGGAAAAGTTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATGTTATTTTTTCCACACTCCCTTTTTCTGTCAAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTTACGTGCATTATTATTGATGACTTGTGGGTTGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGATTTTCCCAGCGGTCTCAATGAGATGTGAAGGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTAACTACTGGTAATTACTGTACAATAGATTATCGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCAAGTCCACAAATGGATAGTTTGGGTGTCTTACTTACGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGAGTTGTCTCTTGTTCACCTCGTCATTGGAAGAATAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATCTCATTCAGAGGTTGACTCGTTAATTTTTTGTGGGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGTCTGGAAGGCACCGCAAGGTGGGGGGGGTGTCTCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACCGTCTGATCCTTATGAATCAGCAATGGTTAGGTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCTGCTACCGAAAAAGCGCAGAATTGGAAGGTGTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTCTGGAAGGCACCGCAATGCGGGGGGGGATGTCTCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCATTCTTACTAAAATGATAAATGCGGGGATAAATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATGAAATTGATGAGAGTTTGCTTCCAGAGATAACAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGAATAAATTTTTTACTTCTTCTGACCCATCGTGAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATTTGGTAATGAAGGCAATGGATATACTGGAGGACGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAGACGCAGGAGATTCAGGAAATCATTCGCGAAAGGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGTATTAGTAATCAGTTATGGCGGTAAAGAAATACTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGTTTCCTATTTTCCTTGGAATCCGATGCGCTGTGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACGAAGGCCGGGAATGCCCAGCCATCACGTGCCCAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTTTCCCGTTGCAATGATTGTCTTAAGCGTTTTCCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGAACAGTGAAAAAAGAATGGTTACCACGGAAGAAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCAAAAACAGCCGCGCGGAAAGCGAGGCAAAAGGAGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATGAATGACCACTCAACGGTAAAACCATTATCCTTGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTATGATTCTATTTTCACGGACCCCCTTTTTCCGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATATACAAACCTATGCATTCACTAATTTATTTATGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTAAGGAACTGGATGAGGATACGGAATTATGGCTCGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGTAATTGTTTGGAATTTTTTATTGCGAGTAGATTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGAAAACAAAACAATTTCTGATTCCGGAAAACTTTTCAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAGAAGCACAGCTTATTTATGAATGGACTGGAAAATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATAAATATAAAGAAGGAATACCAGGGGATGATATACCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTAAAAATAGATGACTTTGCCATTACATCTTTATTGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTTTTTTGCCTTATATATTATAGGAATGGAAAAAAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAGCTGAACCGAGTAAGAGTAATATTTGGCTCTGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTATGATGCCATTCTCCCACACCCCTTTTTTTCGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCGTTGGATGCCCTTGTAGATTTTGTTTCAGGAAATCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGCAATCTATAAAATTCATATACCAGTTATCTCTTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACAGTCCCTGGGAATTAGAAAAGGAGCAGATTACTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATTGCATTTTTGTTCGTCTATATAAGCATTTCCATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATACCCGTCCAGGAGGGACCAATTAACGGGAGAGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATTCTTTCGATATAGCCAAAGCAACTTCATTCTTGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCATTTTTTAACTGCCATTTCTTTTTTCTCCTTTTTTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATTCATTGATATTATTTTCAAATTTGCTATTGAAGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATGCTTTGGATTTATGCTTTGAATGCGTATTTGGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTTAACATAGCCAAAGTTTGCATATATAAGTAAGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCAAGAGCTGTTTCTTATGCGTGCAGAGATTTATTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTAGAGACGATTGTTATGGACTTACTCTTAGCGTTTAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTATGAATCCAATACCCAGCCATTATTTCTACCATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTATAGACCCCAAGAGGATTAAGGAGGAAAAATGGCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAACTTTTCGATATGACAGGAAAAAATCCTAATGATCTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTTTGCCTTGGCCTTTGGCTTTGCCTTTGGCCTTCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCTGTTACACAGAAGGTAAAAAATTGGGAAATATATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCGGTAACCGATACCACTACTCCTGCATCCGGTAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGTCTGGAAGGCACCCAATGCGGGGGGAGGTGTCTCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCTTCTGCGATGACATTGACTATGGAATTCGCGAAATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGATGAATTCCTTCCCAATTTTGACACTCATTCCCTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATTCACGTCCATAGAGTTGGTAATAATGGACTTGATCGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGAAAGAATGAAAACAATTCAAGCTTTATTAGGAGCGGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGGAGTAAATCCATCTGCTTCTCGTTCGCGGAAAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTAAGCGCTTTCCGAAATATGAGACCAGTCCCGTAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCCATGTGTAGTGATATACCGAAAAAATGGGAAAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAAATTGACCCGAATAAGAAGAATATTCGGGTCTGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGCTACGGATACCACGAAAAAGCGGAAGACGGAAGGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCCGCGGCAAGCCAAGGCCAAGCAAAGGCATATATAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGCGGGCAATGGAATAGATATTGACGCAGAAAAAAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGATTGCACGGGAGATAGAGGTCAAAGTAATAGCTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGAGTCCTGAGACGGAGTGGAATCCTGAGAAGGAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGAAAGATGAAGACAGGAATATAGTAGATATACATCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTTATGATAACGAAATTCTTGTCCTTTCTTAGATAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTACTGGAGAGTTGACCAGCATTGAACCTGATAGAGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGAAAATGCTAATGAATATTTCTTTGAGACACAAGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGGAAGGAAAAAGGTATCCTGATATGGTTGAAAATGGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAGAATAGGTTATGAGTTATACTTATTGGCATTGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTAGCCCTCAAAAGGACTAAGGAGGTAACCGATGTCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAAGTTTGCTTACCAGTAACGGGGTACAGAAACTTTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTATGGGCAACTCAATTGGAATATATTGTAGAAGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGCATAGGAAGCTATTAGGTCTTTGAATTCATTGAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGAGTATCCATTTCTCCACTGCCTTCTTAAGAAGGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTGAATTGTTTTCATTCTTTCTTCAGTTGAATCAGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGCAAGAAAAGATTATCTCTGGTTAAGCTCAGCAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGGCCTGTAACCACAATTCTCAATAATGTATTGGTAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGACAACAGGAAAGATTGTAAACGTTATCCCCGATAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCTTTATTCCGAGTATCCATTTCTCTATCGCTTTAGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGTAGCTAAAATCATTCTGGGAAAATACAAGTTGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTTTAGACTGTAAGGGTAAAATCCGAGGAAAAATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTAGTCCTCTTTCGGTTAGCCGAAAGAATGAAAGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGAAAAGATGTCAAAATACTTTGATTTGAAATCAGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCCTTTCTTAGATAGCAACGCCATTCATTATTAGTTGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGAATTAGTCAAAAGCTCACTAATTCCGCAATCATTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTGTTGTTCCTTCTTCAATGGAGTTAGTTGATGCTCTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACGCGCGGATCCGGTTCCATTATTTGCCAGTAAGTTTCCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTTGACAGGAAAAATAGGTCCGTGAAAATAGCGTCATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTATCCATAACATCACTGTCTACCTAAACCAAGACCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATAACATCATCAAAAATAGCCAAGACAAAGCTTGGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATAATGGTTGCATTGGCATTTTCTTTGACTTTTTCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTATGGGGGTATTCTATTCCTTGCACTTTTCTATGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTCAAAGAAAATGATTGGAGAATTGCCTAATGAATAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGCAAGATTGGTGTTATCCCGATATGGAATCCAATTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTATTTCTATGCTGCTGTCCAGCTTGCGCATCCTGTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACAGAAAGCGGGGTATTATGATTTAGTTATAGAACTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATATGGACAGCTGATACTTATACCGAAGCAACCCTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATGTCTGTCTGGACTGTCTGTATATCTGGCTCATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATTTTTGAATTATTTTTATTTTCCTTCATCAGGCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGTTGTCTGAATGTTTTACCATTTTTAATTTCATATTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAAAATCAGGGGATTCCATCCCCGCCTATAGGAGGATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGTATGAAGCTTACAAATGCGATTGAGAAGGCTATCGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGATAGGTGTGAAGAAGTTCAGATGTTCTATTTTGAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATCATCATCCGATATTACTGTTCCATTTTCAATAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACATATATGCATTAACCATTTTCTCGTCATAGCTTGACATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCGTATAGTTCGTTATGATCTTCCAGAGTAATTTGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCGGAGCATTGTTCACTTCACGCTTTCATATTTGGTAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCTATCGGCACTTTTACTCCATATATCGGCAATTGAGCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTAGCCGCCGCCTTTCCGGAAATTTACCGGGAGCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCACATACGCACTGCATGCTGCGGCACATCTCCCGCCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTTTGATCTTGAAGAGATGGGCATGGATATGCCAGAGAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACTAATGGCTGAAATGCTTTGGGGCTTTGGCGGAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCGCTTGCATTGAAGGACTCGATAAGGAATTCTTCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACTGTGCCAGCACCACCTATTCCACCAGTGGCTAATCGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCGGAATAATATCTATTTCATCAATTCCTGCATCCGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACACAACGGAGCGAATGCACGAAATATTCAATGCAAAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGAAGGAAAAGGGAGCTATCCCAATTATCCTCAGAGGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACGGTTAGCGGAGAGGCAGGTGGAAAAATATATTATATGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACAATTCTTCAATACCCTGGTGCCAAAGTGGGATGGCTGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAACCCGATGCCGAAGTGTCCCCACTCTGCTGTTTTTTCAGTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC

>NC_020449|22|4|1486615-1498952|PILER-CR
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTCTCGCTTAACCAAGTTGCCCAGCCAGTAATCATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCTGAGAGCAGATACCTCTTCGTATTTGCTCTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTTGTGGTGTAATAAGTCGTTATTTATTGATGTATAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCCGCATTTATCATTTTAGTAAGAATGAATTGCAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTTATTTCCCGATTTCGCAAACCGAGAATAAGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAAGGGCGTCAAAGCTGCTATATCTTTGAATTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAACAAAGATACAGGTCTTTATGCACGCATAACAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGGAATTTTAAGTTGTGTAAAAATTAAAGTCTTTTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAGGAGAAATGTTCACTCCTGCTCTAGAGAGCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTGCCCCTGCTACTTGATAGCGTATTCCAATATCGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCAAATCCGGTATCACATTTGCGGCAATAAATTTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATATAATTCAGGTTGTAGACCCGCACGATAGCAGAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAGACAAAAAATCGGATAATGAATATGAATAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAATAGAATTGGAGGATAAATGAGAAGGTTAATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAACTCTCAATTAGGGAATCATAATTATTAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAAGAGAAAAATAGATATAAGCAAATCAGAGGATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACATAGGCAGCAGGGGTAAAGACAGTAGTATCATGAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAATTCACCACGGAACACAGCAGTTGCCTTGGCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAAAGGTCTTTCTCGCATCCCTTAATTCTGATGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CACTTCTTATGGCTATCCCATCAGCTTCTTCCGTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGGAAGGTCGAGTATCCATTTTTCAATTGCTTTAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTCATTATCCCTCACCTCCCATCCGATGCAATTCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATTCACAATGAACTTTCACCCTACTTATTTGCCCGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATTTGTGGTCATTGGTTAAAAGAGCCGGCTGGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGTTCTTCCTTCACTATGATGTAGTCAACCATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAGACCGCTGGGTTTCCCAGCGGTCTGTAGATTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCTGACTTTCGTTCTCGCGTTTTCGCGAGAGAGGAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCCAATCGCCTTGCAAATCCTTCACATTGGGCTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGCCTCTCCCACCGGAAATACCCGTCCATTCATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAACT	ATTGTAAGTTCATATTTATAGTCTTCGCTAACATTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCGAGTAAGAGTGATATTCGGGTCAGCTCAAGATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGATTTGTGTTATCCACAATTTCCAAAATTTCCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CATAGTGTTGTGTAATATGATTCCAGGTTACATTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCATATATACGCCTTCGCACAGTTTACCACTAATG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATCTTCCCAGCGATCGTTGCTGGGGAGGGAAAAGTTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGTTATTTTTTCCACACTCCCTTTTTCTGTCAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTACGTGCATTATTATTGATGACTTGTGGGTTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGATTTTCCCAGCGGTCTCAATGAGATGTGAAGGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAACTACTGGTAATTACTGTACAATAGATTATCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CAAGTCCACAAATGGATAGTTTGGGTGTCTTACTTAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAGTTGTCTCTTGTTCACCTCGTCATTGGAAGAATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATCTCATTCAGAGGTTGACTCGTTAATTTTTTGTGGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTCTGGAAGGCACCGCAAGGTGGGGGGGGTGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCGTCTGATCCTTATGAATCAGCAATGGTTAGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTGCTACCGAAAAAGCGCAGAATTGGAAGGTGTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTCTGGAAGGCACCGCAATGCGGGGGGGGATGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCATTCTTACTAAAATGATAAATGCGGGGATAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGAAATTGATGAGAGTTTGCTTCCAGAGATAACAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAATAAATTTTTTACTTCTTCTGACCCATCGTGAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTTGGTAATGAAGGCAATGGATATACTGGAGGACGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGACGCAGGAGATTCAGGAAATCATTCGCGAAAGGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTATTAGTAATCAGTTATGGCGGTAAAGAAATACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTTTCCTATTTTCCTTGGAATCCGATGCGCTGTGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACGAAGGCCGGGAATGCCCAGCCATCACGTGCCCAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTCCCGTTGCAATGATTGTCTTAAGCGTTTTCCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAACAGTGAAAAAAGAATGGTTACCACGGAAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCAAAAACAGCCGCGCGGAAAGCGAGGCAAAAGGAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGAATGACCACTCAACGGTAAAACCATTATCCTTGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGATTCTATTTTCACGGACCCCCTTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATACAAACCTATGCATTCACTAATTTATTTATGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAGGAACTGGATGAGGATACGGAATTATGGCTCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTAATTGTTTGGAATTTTTTATTGCGAGTAGATTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAAACAAAACAATTTCTGATTCCGGAAAACTTTTCAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGAAGCACAGCTTATTTATGAATGGACTGGAAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATAAATATAAAGAAGGAATACCAGGGGATGATATACC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAAAAATAGATGACTTTGCCATTACATCTTTATTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTTTTGCCTTATATATTATAGGAATGGAAAAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGCTGAACCGAGTAAGAGTAATATTTGGCTCTGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGATGCCATTCTCCCACACCCCTTTTTTTCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGTTGGATGCCCTTGTAGATTTTGTTTCAGGAAATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCAATCTATAAAATTCATATACCAGTTATCTCTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAGTCCCTGGGAATTAGAAAAGGAGCAGATTACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTGCATTTTTGTTCGTCTATATAAGCATTTCCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATACCCGTCCAGGAGGGACCAATTAACGGGAGAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCTTTCGATATAGCCAAAGCAACTTCATTCTTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CATTTTTTAACTGCCATTTCTTTTTTCTCCTTTTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCATTGATATTATTTTCAAATTTGCTATTGAAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGCTTTGGATTTATGCTTTGAATGCGTATTTGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTAACATAGCCAAAGTTTGCATATATAAGTAAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CAAGAGCTGTTTCTTATGCGTGCAGAGATTTATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGAGACGATTGTTATGGACTTACTCTTAGCGTTTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATGAATCCAATACCCAGCCATTATTTCTACCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATAGACCCCAAGAGGATTAAGGAGGAAAAATGGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AACTTTTCGATATGACAGGAAAAAATCCTAATGATCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTTGCCTTGGCCTTTGGCTTTGCCTTTGGCCTTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTGTTACACAGAAGGTAAAAAATTGGGAAATATAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGGTAACCGATACCACTACTCCTGCATCCGGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGTCTGGAAGGCACCCAATGCGGGGGGAGGTGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTTCTGCGATGACATTGACTATGGAATTCGCGAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGATGAATTCCTTCCCAATTTTGACACTCATTCCCTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCACGTCCATAGAGTTGGTAATAATGGACTTGATCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAAAGAATGAAAACAATTCAAGCTTTATTAGGAGCGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGGAGTAAATCCATCTGCTTCTCGTTCGCGGAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAGCGCTTTCCGAAATATGAGACCAGTCCCGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCATGTGTAGTGATATACCGAAAAAATGGGAAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAATTGACCCGAATAAGAAGAATATTCGGGTCTGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCTACGGATACCACGAAAAAGCGGAAGACGGAAGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCGCGGCAAGCCAAGGCCAAGCAAAGGCATATATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCGGGCAATGGAATAGATATTGACGCAGAAAAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GATTGCACGGGAGATAGAGGTCAAAGTAATAGCTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAGTCCTGAGACGGAGTGGAATCCTGAGAAGGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAAGATGAAGACAGGAATATAGTAGATATACATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTATGATAACGAAATTCTTGTCCTTTCTTAGATAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TACTGGAGAGTTGACCAGCATTGAACCTGATAGAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAAAATGCTAATGAATATTTCTTTGAGACACAAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGGAAGGAAAAAGGTATCCTGATATGGTTGAAAATGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGAATAGGTTATGAGTTATACTTATTGGCATTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGCCCTCAAAAGGACTAAGGAGGTAACCGATGTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAGTTTGCTTACCAGTAACGGGGTACAGAAACTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGGGCAACTCAATTGGAATATATTGTAGAAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCATAGGAAGCTATTAGGTCTTTGAATTCATTGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAGTATCCATTTCTCCACTGCCTTCTTAAGAAGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGAATTGTTTTCATTCTTTCTTCAGTTGAATCAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGCAAGAAAAGATTATCTCTGGTTAAGCTCAGCAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGGCCTGTAACCACAATTCTCAATAATGTATTGGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGACAACAGGAAAGATTGTAAACGTTATCCCCGATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTTTATTCCGAGTATCCATTTCTCTATCGCTTTAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTAGCTAAAATCATTCTGGGAAAATACAAGTTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTAGACTGTAAGGGTAAAATCCGAGGAAAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTAGTCCTCTTTCGGTTAGCCGAAAGAATGAAAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAAAAGATGTCAAAATACTTTGATTTGAAATCAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCTTTCTTAGATAGCAACGCCATTCATTATTAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAATTAGTCAAAAGCTCACTAATTCCGCAATCATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGTTGTTCCTTCTTCAATGGAGTTAGTTGATGCTCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACGCGCGGATCCGGTTCCATTATTTGCCAGTAAGTTTCC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTGACAGGAAAAATAGGTCCGTGAAAATAGCGTCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTATCCATAACATCACTGTCTACCTAAACCAAGACC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAACATCATCAAAAATAGCCAAGACAAAGCTTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAATGGTTGCATTGGCATTTTCTTTGACTTTTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATGGGGGTATTCTATTCCTTGCACTTTTCTATGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCAAAGAAAATGATTGGAGAATTGCCTAATGAATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAAGATTGGTGTTATCCCGATATGGAATCCAATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATTTCTATGCTGCTGTCCAGCTTGCGCATCCTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAGAAAGCGGGGTATTATGATTTAGTTATAGAACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATGGACAGCTGATACTTATACCGAAGCAACCCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGTCTGTCTGGACTGTCTGTATATCTGGCTCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTTTTGAATTATTTTTATTTTCCTTCATCAGGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTTGTCTGAATGTTTTACCATTTTTAATTTCATATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAATCAGGGGATTCCATCCCCGCCTATAGGAGGAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTATGAAGCTTACAAATGCGATTGAGAAGGCTATCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GATAGGTGTGAAGAAGTTCAGATGTTCTATTTTGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATCATCATCCGATATTACTGTTCCATTTTCAATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATATGCATTAACCATTTTCTCGTCATAGCTTGACAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGTATAGTTCGTTATGATCTTCCAGAGTAATTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGAGCATTGTTCACTTCACGCTTTCATATTTGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTATCGGCACTTTTACTCCATATATCGGCAATTGAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTAGCCGCCGCCTTTCCGGAAATTTACCGGGAGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CACATACGCACTGCATGCTGCGGCACATCTCCCGCCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTGATCTTGAAGAGATGGGCATGGATATGCCAGAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTAATGGCTGAAATGCTTTGGGGCTTTGGCGGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGCTTGCATTGAAGGACTCGATAAGGAATTCTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTGCCAGCACCACCTATTCCACCAGTGGCTAATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGAATAATATCTATTTCATCAATTCCTGCATCCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAACGGAGCGAATGCACGAAATATTCAATGCAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAGGAAAAGGGAGCTATCCCAATTATCCTCAGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGTTAGCGGAGAGGCAGGTGGAAAAATATATTATAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATTCTTCAATACCCTGGTGCCAAAGTGGGATGGCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGATGCCGAAGTGTCCCCACTCTGCTGTTTTTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC

>NC_020449|22|19|1486615-1498952|CRISPRCasFinder
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTCTCGCTTAACCAAGTTGCCCAGCCAGTAATCATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCTGAGAGCAGATACCTCTTCGTATTTGCTCTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTTGTGGTGTAATAAGTCGTTATTTATTGATGTATAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCCGCATTTATCATTTTAGTAAGAATGAATTGCAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTTATTTCCCGATTTCGCAAACCGAGAATAAGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAAGGGCGTCAAAGCTGCTATATCTTTGAATTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAACAAAGATACAGGTCTTTATGCACGCATAACAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGGAATTTTAAGTTGTGTAAAAATTAAAGTCTTTTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAGGAGAAATGTTCACTCCTGCTCTAGAGAGCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTGCCCCTGCTACTTGATAGCGTATTCCAATATCGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCAAATCCGGTATCACATTTGCGGCAATAAATTTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATATAATTCAGGTTGTAGACCCGCACGATAGCAGAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAGACAAAAAATCGGATAATGAATATGAATAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAATAGAATTGGAGGATAAATGAGAAGGTTAATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAACTCTCAATTAGGGAATCATAATTATTAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAAGAGAAAAATAGATATAAGCAAATCAGAGGATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACATAGGCAGCAGGGGTAAAGACAGTAGTATCATGAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAATTCACCACGGAACACAGCAGTTGCCTTGGCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAAAGGTCTTTCTCGCATCCCTTAATTCTGATGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CACTTCTTATGGCTATCCCATCAGCTTCTTCCGTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGGAAGGTCGAGTATCCATTTTTCAATTGCTTTAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTCATTATCCCTCACCTCCCATCCGATGCAATTCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATTCACAATGAACTTTCACCCTACTTATTTGCCCGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATTTGTGGTCATTGGTTAAAAGAGCCGGCTGGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGTTCTTCCTTCACTATGATGTAGTCAACCATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAGACCGCTGGGTTTCCCAGCGGTCTGTAGATTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCTGACTTTCGTTCTCGCGTTTTCGCGAGAGAGGAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCCAATCGCCTTGCAAATCCTTCACATTGGGCTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGCCTCTCCCACCGGAAATACCCGTCCATTCATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAACT	ATTGTAAGTTCATATTTATAGTCTTCGCTAACATTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCGAGTAAGAGTGATATTCGGGTCAGCTCAAGATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGATTTGTGTTATCCACAATTTCCAAAATTTCCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CATAGTGTTGTGTAATATGATTCCAGGTTACATTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCATATATACGCCTTCGCACAGTTTACCACTAATG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATCTTCCCAGCGATCGTTGCTGGGGAGGGAAAAGTTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGTTATTTTTTCCACACTCCCTTTTTCTGTCAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTACGTGCATTATTATTGATGACTTGTGGGTTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGATTTTCCCAGCGGTCTCAATGAGATGTGAAGGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAACTACTGGTAATTACTGTACAATAGATTATCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CAAGTCCACAAATGGATAGTTTGGGTGTCTTACTTAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAGTTGTCTCTTGTTCACCTCGTCATTGGAAGAATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATCTCATTCAGAGGTTGACTCGTTAATTTTTTGTGGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTCTGGAAGGCACCGCAAGGTGGGGGGGGTGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCGTCTGATCCTTATGAATCAGCAATGGTTAGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTGCTACCGAAAAAGCGCAGAATTGGAAGGTGTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTCTGGAAGGCACCGCAATGCGGGGGGGGATGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCATTCTTACTAAAATGATAAATGCGGGGATAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGAAATTGATGAGAGTTTGCTTCCAGAGATAACAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAATAAATTTTTTACTTCTTCTGACCCATCGTGAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTTGGTAATGAAGGCAATGGATATACTGGAGGACGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGACGCAGGAGATTCAGGAAATCATTCGCGAAAGGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTATTAGTAATCAGTTATGGCGGTAAAGAAATACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTTTCCTATTTTCCTTGGAATCCGATGCGCTGTGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACGAAGGCCGGGAATGCCCAGCCATCACGTGCCCAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTCCCGTTGCAATGATTGTCTTAAGCGTTTTCCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAACAGTGAAAAAAGAATGGTTACCACGGAAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCAAAAACAGCCGCGCGGAAAGCGAGGCAAAAGGAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGAATGACCACTCAACGGTAAAACCATTATCCTTGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGATTCTATTTTCACGGACCCCCTTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATACAAACCTATGCATTCACTAATTTATTTATGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAGGAACTGGATGAGGATACGGAATTATGGCTCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTAATTGTTTGGAATTTTTTATTGCGAGTAGATTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAAACAAAACAATTTCTGATTCCGGAAAACTTTTCAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGAAGCACAGCTTATTTATGAATGGACTGGAAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATAAATATAAAGAAGGAATACCAGGGGATGATATACC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAAAAATAGATGACTTTGCCATTACATCTTTATTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTTTTGCCTTATATATTATAGGAATGGAAAAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGCTGAACCGAGTAAGAGTAATATTTGGCTCTGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGATGCCATTCTCCCACACCCCTTTTTTTCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGTTGGATGCCCTTGTAGATTTTGTTTCAGGAAATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCAATCTATAAAATTCATATACCAGTTATCTCTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAGTCCCTGGGAATTAGAAAAGGAGCAGATTACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTGCATTTTTGTTCGTCTATATAAGCATTTCCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATACCCGTCCAGGAGGGACCAATTAACGGGAGAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCTTTCGATATAGCCAAAGCAACTTCATTCTTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CATTTTTTAACTGCCATTTCTTTTTTCTCCTTTTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCATTGATATTATTTTCAAATTTGCTATTGAAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGCTTTGGATTTATGCTTTGAATGCGTATTTGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTAACATAGCCAAAGTTTGCATATATAAGTAAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CAAGAGCTGTTTCTTATGCGTGCAGAGATTTATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGAGACGATTGTTATGGACTTACTCTTAGCGTTTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATGAATCCAATACCCAGCCATTATTTCTACCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATAGACCCCAAGAGGATTAAGGAGGAAAAATGGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AACTTTTCGATATGACAGGAAAAAATCCTAATGATCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTTGCCTTGGCCTTTGGCTTTGCCTTTGGCCTTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTGTTACACAGAAGGTAAAAAATTGGGAAATATAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGGTAACCGATACCACTACTCCTGCATCCGGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGTCTGGAAGGCACCCAATGCGGGGGGAGGTGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTTCTGCGATGACATTGACTATGGAATTCGCGAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGATGAATTCCTTCCCAATTTTGACACTCATTCCCTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCACGTCCATAGAGTTGGTAATAATGGACTTGATCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAAAGAATGAAAACAATTCAAGCTTTATTAGGAGCGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGGAGTAAATCCATCTGCTTCTCGTTCGCGGAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAGCGCTTTCCGAAATATGAGACCAGTCCCGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCATGTGTAGTGATATACCGAAAAAATGGGAAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAATTGACCCGAATAAGAAGAATATTCGGGTCTGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCTACGGATACCACGAAAAAGCGGAAGACGGAAGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCGCGGCAAGCCAAGGCCAAGCAAAGGCATATATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCGGGCAATGGAATAGATATTGACGCAGAAAAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GATTGCACGGGAGATAGAGGTCAAAGTAATAGCTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAGTCCTGAGACGGAGTGGAATCCTGAGAAGGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAAGATGAAGACAGGAATATAGTAGATATACATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTATGATAACGAAATTCTTGTCCTTTCTTAGATAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TACTGGAGAGTTGACCAGCATTGAACCTGATAGAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAAAATGCTAATGAATATTTCTTTGAGACACAAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGGAAGGAAAAAGGTATCCTGATATGGTTGAAAATGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGAATAGGTTATGAGTTATACTTATTGGCATTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGCCCTCAAAAGGACTAAGGAGGTAACCGATGTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAGTTTGCTTACCAGTAACGGGGTACAGAAACTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGGGCAACTCAATTGGAATATATTGTAGAAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCATAGGAAGCTATTAGGTCTTTGAATTCATTGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAGTATCCATTTCTCCACTGCCTTCTTAAGAAGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGAATTGTTTTCATTCTTTCTTCAGTTGAATCAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGCAAGAAAAGATTATCTCTGGTTAAGCTCAGCAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGGCCTGTAACCACAATTCTCAATAATGTATTGGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGACAACAGGAAAGATTGTAAACGTTATCCCCGATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTTTATTCCGAGTATCCATTTCTCTATCGCTTTAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTAGCTAAAATCATTCTGGGAAAATACAAGTTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTAGACTGTAAGGGTAAAATCCGAGGAAAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTAGTCCTCTTTCGGTTAGCCGAAAGAATGAAAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAAAAGATGTCAAAATACTTTGATTTGAAATCAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCTTTCTTAGATAGCAACGCCATTCATTATTAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAATTAGTCAAAAGCTCACTAATTCCGCAATCATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGTTGTTCCTTCTTCAATGGAGTTAGTTGATGCTCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACGCGCGGATCCGGTTCCATTATTTGCCAGTAAGTTTCC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTGACAGGAAAAATAGGTCCGTGAAAATAGCGTCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTATCCATAACATCACTGTCTACCTAAACCAAGACC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAACATCATCAAAAATAGCCAAGACAAAGCTTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAATGGTTGCATTGGCATTTTCTTTGACTTTTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATGGGGGTATTCTATTCCTTGCACTTTTCTATGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCAAAGAAAATGATTGGAGAATTGCCTAATGAATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAAGATTGGTGTTATCCCGATATGGAATCCAATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATTTCTATGCTGCTGTCCAGCTTGCGCATCCTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAGAAAGCGGGGTATTATGATTTAGTTATAGAACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATGGACAGCTGATACTTATACCGAAGCAACCCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGTCTGTCTGGACTGTCTGTATATCTGGCTCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTTTTGAATTATTTTTATTTTCCTTCATCAGGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTTGTCTGAATGTTTTACCATTTTTAATTTCATATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAATCAGGGGATTCCATCCCCGCCTATAGGAGGAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTATGAAGCTTACAAATGCGATTGAGAAGGCTATCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GATAGGTGTGAAGAAGTTCAGATGTTCTATTTTGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATCATCATCCGATATTACTGTTCCATTTTCAATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATATGCATTAACCATTTTCTCGTCATAGCTTGACAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGTATAGTTCGTTATGATCTTCCAGAGTAATTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGAGCATTGTTCACTTCACGCTTTCATATTTGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTATCGGCACTTTTACTCCATATATCGGCAATTGAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTAGCCGCCGCCTTTCCGGAAATTTACCGGGAGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CACATACGCACTGCATGCTGCGGCACATCTCCCGCCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTGATCTTGAAGAGATGGGCATGGATATGCCAGAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTAATGGCTGAAATGCTTTGGGGCTTTGGCGGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGCTTGCATTGAAGGACTCGATAAGGAATTCTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTGCCAGCACCACCTATTCCACCAGTGGCTAATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGAATAATATCTATTTCATCAATTCCTGCATCCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAACGGAGCGAATGCACGAAATATTCAATGCAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAGGAAAAGGGAGCTATCCCAATTATCCTCAGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGTTAGCGGAGAGGCAGGTGGAAAAATATATTATAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATTCTTCAATACCCTGGTGCCAAAGTGGGATGGCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGATGCCGAAGTGTCCCCACTCTGCTGTTTTTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC

>NC_020449|22|4|1486615-1498952|CRT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTCTCGCTTAACCAAGTTGCCCAGCCAGTAATCATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCTGAGAGCAGATACCTCTTCGTATTTGCTCTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTTGTGGTGTAATAAGTCGTTATTTATTGATGTATAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCCGCATTTATCATTTTAGTAAGAATGAATTGCAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTTATTTCCCGATTTCGCAAACCGAGAATAAGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAAGGGCGTCAAAGCTGCTATATCTTTGAATTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAACAAAGATACAGGTCTTTATGCACGCATAACAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGGAATTTTAAGTTGTGTAAAAATTAAAGTCTTTTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAGGAGAAATGTTCACTCCTGCTCTAGAGAGCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTGCCCCTGCTACTTGATAGCGTATTCCAATATCGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCAAATCCGGTATCACATTTGCGGCAATAAATTTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATATAATTCAGGTTGTAGACCCGCACGATAGCAGAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAGACAAAAAATCGGATAATGAATATGAATAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAATAGAATTGGAGGATAAATGAGAAGGTTAATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAACTCTCAATTAGGGAATCATAATTATTAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAAGAGAAAAATAGATATAAGCAAATCAGAGGATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACATAGGCAGCAGGGGTAAAGACAGTAGTATCATGAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAATTCACCACGGAACACAGCAGTTGCCTTGGCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAAAGGTCTTTCTCGCATCCCTTAATTCTGATGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CACTTCTTATGGCTATCCCATCAGCTTCTTCCGTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGGAAGGTCGAGTATCCATTTTTCAATTGCTTTAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTCATTATCCCTCACCTCCCATCCGATGCAATTCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATTCACAATGAACTTTCACCCTACTTATTTGCCCGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATTTGTGGTCATTGGTTAAAAGAGCCGGCTGGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGTTCTTCCTTCACTATGATGTAGTCAACCATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAGACCGCTGGGTTTCCCAGCGGTCTGTAGATTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCTGACTTTCGTTCTCGCGTTTTCGCGAGAGAGGAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCCAATCGCCTTGCAAATCCTTCACATTGGGCTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGCCTCTCCCACCGGAAATACCCGTCCATTCATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTGAAACTTTTTGCAAGAATTTTTGCTGTAAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAACT	ATTGTAAGTTCATATTTATAGTCTTCGCTAACATTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCGAGTAAGAGTGATATTCGGGTCAGCTCAAGATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGATTTGTGTTATCCACAATTTCCAAAATTTCCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CATAGTGTTGTGTAATATGATTCCAGGTTACATTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCATATATACGCCTTCGCACAGTTTACCACTAATG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATCTTCCCAGCGATCGTTGCTGGGGAGGGAAAAGTTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGTTATTTTTTCCACACTCCCTTTTTCTGTCAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTACGTGCATTATTATTGATGACTTGTGGGTTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGATTTTCCCAGCGGTCTCAATGAGATGTGAAGGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAACTACTGGTAATTACTGTACAATAGATTATCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CAAGTCCACAAATGGATAGTTTGGGTGTCTTACTTAC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAGTTGTCTCTTGTTCACCTCGTCATTGGAAGAATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATCTCATTCAGAGGTTGACTCGTTAATTTTTTGTGGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTCTGGAAGGCACCGCAAGGTGGGGGGGGTGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACCGTCTGATCCTTATGAATCAGCAATGGTTAGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTGCTACCGAAAAAGCGCAGAATTGGAAGGTGTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTCTGGAAGGCACCGCAATGCGGGGGGGGATGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCATTCTTACTAAAATGATAAATGCGGGGATAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGAAATTGATGAGAGTTTGCTTCCAGAGATAACAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAATAAATTTTTTACTTCTTCTGACCCATCGTGAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTTGGTAATGAAGGCAATGGATATACTGGAGGACGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGACGCAGGAGATTCAGGAAATCATTCGCGAAAGGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTATTAGTAATCAGTTATGGCGGTAAAGAAATACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTTTCCTATTTTCCTTGGAATCCGATGCGCTGTGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACGAAGGCCGGGAATGCCCAGCCATCACGTGCCCAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTCCCGTTGCAATGATTGTCTTAAGCGTTTTCCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAACAGTGAAAAAAGAATGGTTACCACGGAAGAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCAAAAACAGCCGCGCGGAAAGCGAGGCAAAAGGAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGAATGACCACTCAACGGTAAAACCATTATCCTTGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGATTCTATTTTCACGGACCCCCTTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATACAAACCTATGCATTCACTAATTTATTTATGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAGGAACTGGATGAGGATACGGAATTATGGCTCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTAATTGTTTGGAATTTTTTATTGCGAGTAGATTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAAACAAAACAATTTCTGATTCCGGAAAACTTTTCAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGAAGCACAGCTTATTTATGAATGGACTGGAAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATAAATATAAAGAAGGAATACCAGGGGATGATATACC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAAAAATAGATGACTTTGCCATTACATCTTTATTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTTTTGCCTTATATATTATAGGAATGGAAAAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGCTGAACCGAGTAAGAGTAATATTTGGCTCTGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGATGCCATTCTCCCACACCCCTTTTTTTCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGTTGGATGCCCTTGTAGATTTTGTTTCAGGAAATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCAATCTATAAAATTCATATACCAGTTATCTCTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAGTCCCTGGGAATTAGAAAAGGAGCAGATTACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTGCATTTTTGTTCGTCTATATAAGCATTTCCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATACCCGTCCAGGAGGGACCAATTAACGGGAGAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCTTTCGATATAGCCAAAGCAACTTCATTCTTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CATTTTTTAACTGCCATTTCTTTTTTCTCCTTTTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCATTGATATTATTTTCAAATTTGCTATTGAAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATGCTTTGGATTTATGCTTTGAATGCGTATTTGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTAACATAGCCAAAGTTTGCATATATAAGTAAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CAAGAGCTGTTTCTTATGCGTGCAGAGATTTATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGAGACGATTGTTATGGACTTACTCTTAGCGTTTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATGAATCCAATACCCAGCCATTATTTCTACCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TATAGACCCCAAGAGGATTAAGGAGGAAAAATGGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AACTTTTCGATATGACAGGAAAAAATCCTAATGATCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTTGCCTTGGCCTTTGGCTTTGCCTTTGGCCTTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTGTTACACAGAAGGTAAAAAATTGGGAAATATAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGGTAACCGATACCACTACTCCTGCATCCGGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGTCTGGAAGGCACCCAATGCGGGGGGAGGTGTCTC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTATTGTGTTATTTTTGCACACCCTGTTTTCCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCTTCTGCGATGACATTGACTATGGAATTCGCGAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGATGAATTCCTTCCCAATTTTGACACTCATTCCCTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTCACGTCCATAGAGTTGGTAATAATGGACTTGATCGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAAAGAATGAAAACAATTCAAGCTTTATTAGGAGCGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGGAGTAAATCCATCTGCTTCTCGTTCGCGGAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTAAGCGCTTTCCGAAATATGAGACCAGTCCCGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCATGTGTAGTGATATACCGAAAAAATGGGAAAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAATTGACCCGAATAAGAAGAATATTCGGGTCTGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCTACGGATACCACGAAAAAGCGGAAGACGGAAGGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCGCGGCAAGCCAAGGCCAAGCAAAGGCATATATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCGGGCAATGGAATAGATATTGACGCAGAAAAAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GATTGCACGGGAGATAGAGGTCAAAGTAATAGCTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAGTCCTGAGACGGAGTGGAATCCTGAGAAGGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAAGATGAAGACAGGAATATAGTAGATATACATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTATGATAACGAAATTCTTGTCCTTTCTTAGATAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TACTGGAGAGTTGACCAGCATTGAACCTGATAGAGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGAAAATGCTAATGAATATTTCTTTGAGACACAAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGGAAGGAAAAAGGTATCCTGATATGGTTGAAAATGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGAATAGGTTATGAGTTATACTTATTGGCATTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGCCCTCAAAAGGACTAAGGAGGTAACCGATGTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAGTTTGCTTACCAGTAACGGGGTACAGAAACTTT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTATGGGCAACTCAATTGGAATATATTGTAGAAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGCATAGGAAGCTATTAGGTCTTTGAATTCATTGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TAGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAGTATCCATTTCTCCACTGCCTTCTTAAGAAGGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGAATTGTTTTCATTCTTTCTTCAGTTGAATCAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGCAAGAAAAGATTATCTCTGGTTAAGCTCAGCAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGGCCTGTAACCACAATTCTCAATAATGTATTGGTAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGACAACAGGAAAGATTGTAAACGTTATCCCCGATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCTTTATTCCGAGTATCCATTTCTCTATCGCTTTAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTAGCTAAAATCATTCTGGGAAAATACAAGTTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTATGAGTTTGATTGTGGATGGTCTTTCCGCCATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTTTAGACTGTAAGGGTAAAATCCGAGGAAAAAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTAGTCCTCTTTCGGTTAGCCGAAAGAATGAAAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGAAAAGATGTCAAAATACTTTGATTTGAAATCAGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCCTTTCTTAGATAGCAACGCCATTCATTATTAGTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AGTTTGGTATGCTTACAGGTTTCCACTCTATTTTAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGAATTAGTCAAAAGCTCACTAATTCCGCAATCATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTGTTGTTCCTTCTTCAATGGAGTTAGTTGATGCTCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACGCGCGGATCCGGTTCCATTATTTGCCAGTAAGTTTCC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTTGACAGGAAAAATAGGTCCGTGAAAATAGCGTCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTATCCATAACATCACTGTCTACCTAAACCAAGACC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAACATCATCAAAAATAGCCAAGACAAAGCTTGG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATAATGGTTGCATTGGCATTTTCTTTGACTTTTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATGGGGGTATTCTATTCCTTGCACTTTTCTATGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TCAAAGAAAATGATTGGAGAATTGCCTAATGAATA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GCAAGATTGGTGTTATCCCGATATGGAATCCAATTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTATTTCTATGCTGCTGTCCAGCTTGCGCATCCTGT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAGAAAGCGGGGTATTATGATTTAGTTATAGAACTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATGGACAGCTGATACTTATACCGAAGCAACCCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATGTCTGTCTGGACTGTCTGTATATCTGGCTCAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATTTTTGAATTATTTTTATTTTCCTTCATCAGGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTTGTCTGAATGTTTTACCATTTTTAATTTCATATT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AAAATCAGGGGATTCCATCCCCGCCTATAGGAGGAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GTATGAAGCTTACAAATGCGATTGAGAAGGCTATCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GATAGGTGTGAAGAAGTTCAGATGTTCTATTTTGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATCATCATCCGATATTACTGTTCCATTTTCAATAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ATATATGCATTAACCATTTTCTCGTCATAGCTTGACAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGTATAGTTCGTTATGATCTTCCAGAGTAATTTG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGAGCATTGTTCACTTCACGCTTTCATATTTGGTA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CTATCGGCACTTTTACTCCATATATCGGCAATTGAGC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTAGCCGCCGCCTTTCCGGAAATTTACCGGGAGCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CACATACGCACTGCATGCTGCGGCACATCTCCCGCCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TTTGATCTTGAAGAGATGGGCATGGATATGCCAGAGA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACTAATGGCTGAAATGCTTTGGGGCTTTGGCGGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGCTTGCATTGAAGGACTCGATAAGGAATTCTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	TGTGCCAGCACCACCTATTCCACCAGTGGCTAATC
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CGGAATAATATCTATTTCATCAATTCCTGCATCCG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	ACAACGGAGCGAATGCACGAAATATTCAATGCAAA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GAAGGAAAAGGGAGCTATCCCAATTATCCTCAGAG
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	GGTTAGCGGAGAGGCAGGTGGAAAAATATATTATAT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	AATTCTTCAATACCCTGGTGCCAAAGTGGGATGGCT
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	CCGATGCCGAAGTGTCCCCACTCTGCTGTTTTTTCA
GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015424989.1\|1476710_1477205_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425010.1\|1509265_1510252_-\|LPP20-family-lipoprotein	unknown	unknown	gnl\|CDD\|376738
NC_020449.1\|WP_044279005.1\|1477854_1478784_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129401
NC_020449.1\|WP_015424993.1\|1481175_1482309_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_020449.1\|WP_015424992.1\|1479458_1480604_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NC_020449.1\|WP_015425005.1\|1501351_1503763_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_020449.1\|WP_044279009.1\|1485678_1485933_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279011.1\|1500293_1501352_-\|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|376633
NC_020449.1\|WP_015425008.1\|1505413_1507459_-\|hypothetical-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NC_020449.1\|WP_015424987.1\|1471662_1472406_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_020449.1\|WP_015425002.1\|1499422_1500013_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_020449.1\|WP_015424988.1\|1472421_1476486_+\|signal-peptide	unknown	unknown	gnl\|CDD\|367909
NC_020449.1\|WP_044279012.1\|1504551_1505421_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_020449.1\|WP_015425006.1\|1503759_1504539_-\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_020449.1\|WP_015425009.1\|1507455_1508127_-\|CRISPR-associated-endonuclease-Cas6	cas6	cls000004_cas6_CAS-I:CAS-III	gnl\|CDD\|379957
NC_020449.1\|WP_044279007.1\|1482729_1483956_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|225926
NC_020449.1\|WP_015424991.1\|1478731_1479313_-\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894
NC_020449.1\|WP_015425003.1\|1500009_1500300_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_020449.1\|WP_015424986.1\|1470461_1471685_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NC_020449.1\|WP_157860014.1\|1508494_1508776_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015425010.1\|1509265_1510252_-\|LPP20-family-lipoprotein	gnl\|CDD\|376738	pfam02169, LPP20, LPP20 lipoprotein. This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.	2.8608e-20
NC_020449.1\|WP_044279005.1\|1477854_1478784_-\|hypothetical-protein	gnl\|CDD\|129401	TIGR00300, TIGR00300, TIGR00300 family protein. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family. [Hypothetical proteins, Conserved].	0.0069577
NC_020449.1\|WP_015424993.1\|1481175_1482309_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	5.06062e-54
NC_020449.1\|WP_015424992.1\|1479458_1480604_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.75967e-179
NC_020449.1\|WP_015425005.1\|1501351_1503763_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.28594e-43
NC_020449.1\|WP_044279011.1\|1500293_1501352_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.11187e-91
NC_020449.1\|WP_015425008.1\|1505413_1507459_-\|hypothetical-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	6.32847e-24
NC_020449.1\|WP_015424987.1\|1471662_1472406_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	3.63603e-99
NC_020449.1\|WP_015425002.1\|1499422_1500013_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.93267e-28
NC_020449.1\|WP_015424988.1\|1472421_1476486_+\|signal-peptide	gnl\|CDD\|367909	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex. TamB is an integral inner membrane protein that forms a complex - the translocation and assembly module or TAM - with the outer membrane protein, TamA. TAM is responsible for the efficient secretion of the adhesin protein Ag43 in E.coli K-12.	0.00189823
NC_020449.1\|WP_044279012.1\|1504551_1505421_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.38978e-74
NC_020449.1\|WP_015425006.1\|1503759_1504539_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.12813e-17
NC_020449.1\|WP_015425009.1\|1507455_1508127_-\|CRISPR-associated-endonuclease-Cas6	gnl\|CDD\|379957	pfam17262, DUF5328, Family of unknown function (DUF5328). This family of unknown function can be found in Bacteria and Archaea. Some of the proteins in this family are annotated in UniProt as putative DNA repair proteins.	5.01117e-44
NC_020449.1\|WP_044279007.1\|1482729_1483956_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	1.06332e-12
NC_020449.1\|WP_015424991.1\|1478731_1479313_-\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	2.42279e-75
NC_020449.1\|WP_015425003.1\|1500009_1500300_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.33276e-21
NC_020449.1\|WP_015424986.1\|1470461_1471685_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	3.87637e-59

>NC_020449.1|WP_044279009.1|1485678_1485933_-|hypothetical-protein
MNNEKDRLICSLGKEYNESRLVGQMMEAYRIRQCYTCYRNYNHCNYYNDAIDTVSADVHKGKKELPDPCPKYENKFTREKRKKK
>NC_020449.1|WP_044279007.1|1482729_1483956_-|T9SS-type-A-sorting-domain-containing-protein
MKKFFLLLLLPVICIAFLQADYIYVVNSESRTLSRIDMETGTVNNSFTQLGLTPNMLKVNSDYIYVVLSGANSIQMIDRNSGTTIRNIFIASSSNPWDVVEDSGYLYVSGMFTNKVYKISQESWSVVDQITVGTAPEGLGVCNGKLYVCNTGGYASGYANSSVSVIDLDSFSVIKTIPVWTNPQDIAVFGSQLHIVCTGNWSSISGAVDIIDTITDERIDRLLIGGNPWSVWISPQGFAYLGEGYNSGVYSYNASTLEIMHNSSNPLTPGGIMISGSTDCIAVLYAPYSQNGTVYLRSNNWQPITQWTVALIPTDICYFSYETPVSDEELPLPQITIYPNPVNKDGILNFKADNAFYGELKIYNLKGQKVLQLPVQKGEASIDLRGKGMGSGLYFYHSGKAQGKIIVK
>NC_020449.1|WP_015424993.1|1481175_1482309_-|Fic-family-protein
MKFEEFKSGTYKNQFQYKSFLPSKINHQWTWDDPRINLLLEKAAQTLGELNAFSRIVPNVDLFIRMHILKEANTSSRIEGTKTDIEDVVLDESSVFPEKRDDWQEVQNYVQAMNEAIKQLENLPLSLRLIRNTHRILMTNVRGKHKTPGEFRTSQNWIGGSSLADAAFIPPHKDDMSDLLDDFEHFLYNDRIVVPHLIRCAIAHYQFETIHPFQDGNGRIGRLLITLYLVSNHLLIKPTLYLSDFFERHRGAYYDSLTRVRDSNDLGQWVRFFLEAVMETAEKGKTTFAQILNLHTNIESELMNLGKKTDNARKLLKHLYQSPVVSVKQVESILGVKYYSANELIKTLVEINILEETTGYSRNRVFMFKRYIDVFKE
>NC_020449.1|WP_015424992.1|1479458_1480604_-|acyl-CoA-dehydrogenase-family-protein
MDYFLTEEQLEMQEIARRIAEEKIRPVSEKYDEEGIFPWDIVEVMKQSDLFAILVPEEYGGISGKVADLAVVTEELCAVDVGISLAFGATGLGMYPILIAGSEEQKQKYLAQIAAGEQLAAFALTEANAGSDAGAIETTAQKEGDYYLLNGTKQWITNGGEAGIYCVFAMTDKTKGARGCSCFLVEKGTPGFNFGKKENKMGIRASATRELIFEDCKVPAENLIGREGTGFITAMKVFDKSRPMVGAQSVGVARGAFEVAIKYSRERQQFGKPISSFQGIQFMLADMATQIEAARALVMQTARMIDSGAKNYSKESAMCKYFASDVAMKVTTDAVQILGGYGYMKEYPVEKMMRDAKILQIYEGTNQIQRNIVAANLLKEY
>NC_020449.1|WP_015424991.1|1478731_1479313_-|epoxyqueuosine-reductase-QueH
MAEKELLLHCCCAPCLIAPFYKLKAEGKELTAFWFNPNIHPLLEYQKRRDTLRDFAGKENIELLEQDEYGLMNFLQTTLKDINNRCQYCYETRLNAVAKTAKELCYSSFSTTMLYSKYQKHELIVDIALKMSAKYGIDFFYEDWRSLWWEGRKLAKEAGLYRQQYCGCIFSEEERYREQIQRDRPKENKDLSD
>NC_020449.1|WP_044279005.1|1477854_1478784_-|hypothetical-protein
MSKYKEIDLKKIKTYPIDQRYSKVNINAFAKKGKVKVNDFFNCLPDILAAKDLKELILACKKARENHKPIIIGLGAHIIKCGLAPLLIEMMEEDFVSAFVCNGAVAIHDYEIANFGKTSEDVSSALSDGSFGMAEETVKGINEAINKGFKESLGLGEAIGKELYTKAKYKDLSLLASAYKWEIPVCVQVAIGTDIIHQSPYADGKAIGDCSMRDFRIFAEKVSELNRGGVFLNLGSAVIVPEVFLKALTVARNIYGEVQNFTTAVFDFNVHYRAKVNVAERPVENGGKGYYFIGQNEIMVPLLLKAIME
>NC_020449.1|WP_015424989.1|1476710_1477205_+|hypothetical-protein
MPDNVKNESAVNTKKAPKMADFSTRVSLVELIMILMLVGLVFVFYFGMKQLQIDKANEAIAQEKFENIIPTFQKIIEAMEAYRKADEFGDYPAFLEELNLGDINTNDFKFEYSADTYTITAITQPAFGKAGIKVIYNLSDKSFTVEDPTPDKKPTIKDEWLPQE
>NC_020449.1|WP_015424988.1|1472421_1476486_+|signal-peptide
MPKAKKFLIFVLILLLINTGFVLAWYAFGLRNYCKNYLARYLGKLTKGEVTIDELHISDRQLLAQGITYTSADSSIAVKVHRLSVQYNLTRYLFSGFKTSKLISDIEIYKPTVHYSYFYKPKPPKAKKPLVLPDFAHYFKRLQLTEGTAVISAEIPVKILQEGYLSISDSFQGINLTAINKSNSNVTLNAFSAKGGKLTAKGLLDKGRLAKVEAEIASFRPLSISHPDLQNLQTEISLVASLTQDTLKAPLKYKAEAQIWGTETLFAGNYPVLIPYLWIKTDGRNLNLSLSHSNFGSSELEGEVRISNLDQKMKFDYASATANIDLSMFHKELQGYVMVQAKGYGTIDKPELELNVTSTQAKYQKYAFRNLNLTGSYNNNELAFNLPELIFENQIINCSGNLNPLYRTINAHLETKPIKIQSQPYLATANLDVYAELWEKYPFVDATINQLDFNYGLATLQGVSGKVKLIPLASDNNLYLDANISGDNGFNIKVIGDIFSRNLLLDAKFDNLEVAELYSQPKVIEMNPYLNGDIKAIITGENVLLQTLLGVKLDKPVPINTPLDALGTFNYKTKEASLHLISKNGMMNYQPLNFELSAMLKDNLLTVQGFKFNDFISLSGAINLSNYRDLNFALNLKNISYLDIVHYFPQLDINLPEFYGLNVFAEYNRENLGELKANAYLSYIDLLAVTPFSLKLELNGPVDSIQVAGNIHNSEQNILNLSGLIGFQPELNISLDAGFHDLAIQNVIINSPLTGKLNGIAGITWHKIEERKPELELRANLLSEDITIKNYTINTAVIQGKQTPRQLIVDSLFVQSAGLFKLNSSGAINYNALYNEFFEGPEQLNLNVEGELFGWLKNLTPYILEAKGKSSLSVSIGTSEDQFLVSGGKININNGFIRLKDQTEPLANINIRGGFDKNRLIIEYGQIQMGEGKLIFSNIFEADNSDHFMLGFLDLGIFRAMCEEPGILVNIPKYTTPRSLTKVILRGQNSRYATIRGPFDQMKISGEAVASNTNVLYPPDTENLLTLASTVRGSTKKKNSEPNPLPFILDVKLIVGENVKYVTYPAELRVVPGGYLHLAYDGLSFIVKEASFSSEQGTVDIFGTIFQVEKVNLTLVDSQNLLGLEGIFYKRAPDGSMITLSAITSSDYTKSFMERLQLSLTSDNPEDKTISQILARLHYTGTETPDRTQGEFWQDEALGLISGNLDASLFTPILSPIENYIRRTLHLDSFTINAGFIQNLYTEYTNNPQQFAEYTDMNQLSSDIAKFSSSILLNNLSISMSKYLGSSIFLDYMLKLQEATNLQNRTRILVSNEASIRLILPKNYRVAYTVTYEAQEKKTSHEIMLSRFIRFWGL
>NC_020449.1|WP_015424987.1|1471662_1472406_+|ABC-transporter-ATP-binding-protein
MNYCATHNGLYYEKAIVLFYKDFGMICLAGYDLCKSYTDSNQTINVLRKATLEVQESELVCITGKSGSGKSTLLHLLGLLDSPDSGKVMIGGNYVQSTMPEAASIRNLELGFVFQFHYLIEDLTAQENVALPMIISGVSHSKAIANAVSLLNELDLAERITHYPNQLSGGEQQRVALARALINNPKIVLADEPTGNLDPEHSNEIWDMILKLNQERGQTFVIVTHDVANASKAQVTYNLSEGKLEKR
>NC_020449.1|WP_015424986.1|1470461_1471685_+|ABC-transporter-permease
MDKLSTFFLTRYLKAPKRNLLRFSFVFMILGIILSVGILSAGLNLFEGYERTLKDVLLGTFPHITLTKANLDNISNDETDSLITKLSKRDEIQQITPLLSYPVMTAGKEKVRGAILNAYDFNGKQPFPQAKYIQKGKKIPAKGEVIIGKYLAKELGKDIGDTLKVVFTRLDNISALGIFPSEYYLPIAGIYSSGFYETDRSLVLTNITDAEYMLNAKPGFSKLEIRLKSKDIEKAPEIAQLLQTIVGPEYSVYPWQTFSAGLLHLVEMEKWLIFIIFCFLVLIAGINVISAVATIILDKKNEIAVLKTLGANSASIKRILCLQVGLSALLAIIAGLVFGALLSWGIEKQNFYQLKGDVYFIDSLNTSIIPLNQIIIFVVSSVLIFICIYFPLKQIDKMEIIELLRNP
>NC_020449.1|WP_015425002.1|1499422_1500013_-|CRISPR-associated-protein-Cas4
MNDFQFITPSEVMEYLFCPRFVYYMNILKIEQHEHRRTLVNKGRDIHKLKMVQNKEYLRKKAGAIDKLTDVYLSSEKLKLVGKVDEVLFLADGSAAPLDYKYAFWENKVYKTLKYQQILYALLIMENFQVPVYKAFIVYTRSQNHLEELAITPKMLDKAKLILDEIFMIINLEKYPKPAKAKRKCLDCTYRNLCSV
>NC_020449.1|WP_015425003.1|1500009_1500300_-|CRISPR-associated-endonuclease-Cas2
MLTWVMYDIVKDKIRNKVSKCCEQAGIYRVQYSVFLGEISRTKCKELSCQIEELINPEIDRVYIFPMCNEDFKSCQLLGQAFDPALITDEIKAFFL
>NC_020449.1|WP_044279011.1|1500293_1501352_-|CRISPR-associated-endonuclease-Cas1
MEVHLNTYGSYLRKKDEMFELSIEDRKTKLSPEKISSIVISNAATITTDAIQLAMDYNIDIVFLDKYGSPYGRIWFPKIGSTVLIRRRQLEMLSDNVGLQFIKDWIAIKIMNQYRFVQRLISKRDCDKSIFQTRMQNMQEAAICIMQAEGKLEELSGSFMGWEGGASKNYFSILAELIPDAYKFEGRSSRPAKDAFNAMLNYGYGILYSKVERALIIAGLDPYLGLLHSDNYNKKSFVFDFIEPYRILVDEPVFYIFSRHKFSPYFIEPVHQGVLLSTTGKKFLAPLLLEHFDEIIRYRNKNRKRLDMIQTDAHAFANFLIDKRENYLETSINRKLQNFLNSNFADNGEEEC
>NC_020449.1|WP_015425005.1|1501351_1503763_-|CRISPR-associated-helicase/endonuclease-Cas3
MIISHPAKNGYQEKLLVDHLAEVASDAKEMIQKLSLNLTTTTKDKLAFVAEKIGIMHDLGKASSYFQNYVRGGNRNNLTHHSYISAVITFFNFHSWKEYSSFAPNAFKCVQKHHSNLSSFWGEDLNNAALIDETLTIYKSVWENINNDVDLKKLLEKHNIILPELSYNSFQFMSDNLEEFSLNYSPTNIDEAVESFLIQNLLFSVLIDADKHNAAVKEYVFLEKLNPKLSFSPAKKIAEKNKIQSALNTLRNQFIDNIRSNQNITPSQKLYTLTAPTGSGKTFACLEFTDLIQSYEDNLRRVIYCLPYTSIIDQNYQEFENVLLSNLNEKTNLDYRFLVKHHHLVDYSAITKDEPTYNWEELQKDILSIESWESACVISTFVQLFHSLIGNRNAMVRKLHNIINSIILLDEVQNLPADYYPLLRVVFKVLAEKFDTYILSCSATQPYLYPDGKYIELCKKELFSVPDFNRVKLYINLKEQSVDEFCQNFLEFNDAKSILIVMNTKRSALAVYNYLSSNYQSSYQVFCLTTLHIPIHRQEIIDKINTILKEIQKKVILVSTQLVEAGVDLSFQRVYRDFGPLDSIIQVAGRCNRNNELGELGGEMFLVNLQKDGRLLSHYVYDKYLLSKTKECLEQFTSLESRQFSHIIDVYYQILDIGAKGEAILRAISDLNYDQNIQNQVPIADFKLISDDYATETVYILCDDTSTNAISSIIGYLDCLKNTKLPKEEIQKIKTALEKEYRALNSYQITLSPNELSVIYDSYKVKKLNDHIYYIDSEFIEDFYECSTGFKLYSTAKSSCLAL
>NC_020449.1|WP_015425006.1|1503759_1504539_-|CRISPR-associated-protein-Cas5
MNIPENSNRILELKLSGKFAHFRKFYTNASSLTYLIPPRTAICGLLASILQIERDCYYNLMSSDKLGIAISLVPNIYYHKVFQTLNYAQDKSKNIPINDLSAHKQCRLELLKAQGSKNLEWILYLCFNSAEENNFAELEHKIKEKNFGYGLYLGQRQFIAYLELIRTYSQGEFKPISESDYLDSAIERELIDSIISQDCDLIMERMPLEQELKTDTKKSYRQTKRFGNIVIETNGKRIHGKFRNLVELNNDLKARVSFL
>NC_020449.1|WP_044279012.1|1504551_1505421_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MINNNSEILFLYDAQMCNPNGDMDNENKPRMDYDTFINLVSDVRLKRYIRDYFEDIKGEEIFISNKAKDAKERNKQIQDLNKGHLKLIDVRLFGAVTAEEDRGGHFTGPVQFNWGYSLHPVEIVDSSTITSSFSGGQGIGKDYRLYYSLIAFSGSVNANAAKETNLTEEDLKLFDEAMLNSIPLARTRTKIGQYPRLYLRLELKGKDKFLKDLRSMVEVSSQNPNIVQNLRLIRNPEDYELDIKPLIKYLEQNIELISCIHYWKDEQISIPDFDKIFIQENWKKPLSLK
>NC_020449.1|WP_015425008.1|1505413_1507459_-|hypothetical-protein
MIPLYQAIGKIVLTKENFNSLPEKDKKLFIVKQYCNELDNYQWSKKVNDKVETYIGRLLELNLDTNKKECYFTQGTELSPEKKDELLVFTNYAPHDPSIYASHISLKPLLQFGLYQYVNNNFKNIPWTDLTRGEKFLKFLQKIQEIFYRIENEIISLRYDKLKAEQQKDFPDPENIPELKNNLNNQSKYNKEFQKCLKKYLSSTLKEYVTERQAYALKIDGKFLHQGEYADCYIDVLYYYLFEKHYLENTKQGYCHICGQDSTLPKDIAIKQKFFGTTNPLYFDKVDKSITHNAFSMCEKCNQQVLIGIQYASTKLRTTLLGLQTIVLPEINFEADNSEELIDPQKIIMTTNLLRRIPIDQKRDDIYTLNTLIKKLKEFTLLFYNKPSPTSQEFIINGMIKNINLRELINKTEHLNILIHDYKLGSLYGYQALLSFEGLRYLILPSKESHPGLNQYDYTVLNKNIISTLGTYIYKRKFQYYDLICMFTDIFNRKNNNLETENKYFLNITPFLMTVYLDHLLKFNQLEGVHIMEKRNLIAALQDEKITAYFNTHSQIYENNFYAQGLFILGMYIAAIESEQRKKNIKSTLINRLNLRGIPVQKVKSLMAMVDEMGKVWDIFYDSVTENYYRECMQGIEKSSLSPEEIVFHILCGRAYSNYLGAIYKQEHPDKTEKNQEEQND
>NC_020449.1|WP_015425009.1|1507455_1508127_-|CRISPR-associated-endonuclease-Cas6
MKIRYLIVSWTDVLLEPRDIPKLRGFFVNQFPEDHIFHNHLPGFGYNYKAPQIQYRVIEKHPALLAINDGIDIIKKVFLEVDKLEINGKTLISNEREISLKEEDFGLTENYYPYFFASPWMALNQENYQEYNKMNTFQRNQRLKTILKNNLKTLSKAFDYWIPEVDKLNVDGWFKPLEVNFHNQPMQCFTGDFTTNFLIPEFLGLGKQSARGFGVVRKRKEEK
>NC_020449.1|WP_157860014.1|1508494_1508776_-|hypothetical-protein
MKNELIQESSSLVYICTLSLINLEMRTHNDHKEFYILFGKSEIVNPFFLNCIIWDRHYRIYCPRESYQAVDNSCLTLACFYLGATSYKEVTTK
>NC_020449.1|WP_015425010.1|1509265_1510252_-|LPP20-family-lipoprotein
MPKKIIYTILLFLLIGSCLYAGKKKPEWISNPYSQYPSKQYLCGVGMAKELNSAQNEALKNIAGFFETRVIAVTKSMESEKSSSSNYQTSSETSSSVKAIAEGTLKYTQIKETWQDPKTKTFYALAVMDKIAVQTIYRNEIDDCEEFIENCLAPNDDPLIRFAKILSAIDKLQQTQNAYTYYNALASDSGILLKPFHSLQELLELRNYAAREIPLQIRVFGDSSGLLDASLKNVINQIGLLENDNPEYQIVATVNPEPHKSLGQQFFQPLRLNISFNYGEKNLFSFVDKTEQGGSTIEEATSRGIRVLAQNIENKFRKEFYQFLLNLH

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Crispr_ID: NC_020449_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_23

1574372-1574468

Orphan

Consensus_repeat	Method
GTTAAAATATATGAGCTCGTCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_23

>merge|NC_020449|23|1574372-1574468|CRISPRCasFinder
GTTAAAATATATGAGCTCGTCAGCTTGAAGTAATAAACCATATTTTCCCCCTTATTGTTAATATATTATATTGTTAAAATATATGAGCTCATCAGCT

>NC_020449|23|20|1574372-1574468|CRISPRCasFinder
GTTAAAATATATGAGCTCGTCAGCT	TGAAGTAATAAACCATATTTTCCCCCTTATTGTTAATATATTATATT
GTTAAAATATATGAGCTCATCAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015425061.1\|1577424_1578483_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176178
NC_020449.1\|WP_015425054.1\|1568256_1569366_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_071818978.1\|1574829_1575480_-\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NC_020449.1\|WP_015425065.1\|1581696_1582941_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_020449.1\|WP_015425052.1\|1566332_1567244_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_071818977.1\|1569378_1570056_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NC_020449.1\|WP_015425045.1\|1557899_1560524_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NC_020449.1\|WP_157860016.1\|1575460_1576768_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NC_020449.1\|WP_015425066.1\|1583353_1584079_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_020449.1\|WP_015425068.1\|1585424_1586351_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425048.1\|1563642_1565286_-\|YgiQ-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|274847
NC_020449.1\|WP_015425064.1\|1580755_1581700_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NC_020449.1\|WP_015425063.1\|1579755_1580751_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425062.1\|1578497_1579745_+\|lysine-2,3-aminomutase	unknown	unknown	gnl\|CDD\|163532
NC_020449.1\|WP_015425053.1\|1567308_1568253_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NC_020449.1\|WP_015425051.1\|1565976_1566333_+\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NC_020449.1\|WP_015425056.1\|1570068_1572462_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425046.1\|1560537_1562436_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|235542
NC_020449.1\|WP_015425067.1\|1584075_1585425_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213192
NC_020449.1\|WP_018196882.1\|1565350_1565563_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015425061.1\|1577424_1578483_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176178	cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc.	3.46338e-13
NC_020449.1\|WP_015425067.1\|1584075_1585425_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	4.60313e-44
NC_020449.1\|WP_071818977.1\|1569378_1570056_+\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	1.7094e-10
NC_020449.1\|WP_015425064.1\|1580755_1581700_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.73321e-75
NC_020449.1\|WP_015425045.1\|1557899_1560524_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NC_020449.1\|WP_157860016.1\|1575460_1576768_-\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.12654e-33
NC_020449.1\|WP_015425066.1\|1583353_1584079_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.84392e-15
NC_020449.1\|WP_015425048.1\|1563642_1565286_-\|YgiQ-family-radical-SAM-protein	gnl\|CDD\|274847	TIGR03904, putative_radical_SAM_protein_YgiQ, uncharacterized radical SAM protein YgiQ. Members of this family are fairly widespread uncharacterized radical SAM family proteins, many of which are designated YgiQ. [Unknown function, Enzymes of unknown specificity].	0
NC_020449.1\|WP_015425046.1\|1560537_1562436_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NC_020449.1\|WP_015425065.1\|1581696_1582941_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.20222e-45
NC_020449.1\|WP_015425062.1\|1578497_1579745_+\|lysine-2,3-aminomutase	gnl\|CDD\|163532	TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.	0
NC_020449.1\|WP_015425053.1\|1567308_1568253_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	5.5592e-130
NC_020449.1\|WP_015425051.1\|1565976_1566333_+\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.31085e-34
NC_020449.1\|WP_071818978.1\|1574829_1575480_-\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	5.98464e-10
NC_020449.1\|WP_018196882.1\|1565350_1565563_-\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	5.81548e-18

>NC_020449.1|WP_015425056.1|1570068_1572462_+|hypothetical-protein
MKKYLLLILSIILATHIFAVALMNISPQVYSFHQKCDLKVEVQQGLSDITKMKVYYRIGKSNRWMTEEMKQDSPGSPSFIATLPADYLTTDVIEYYFCVELSQGNKEYFPPQNETVPNYILEPDIASGEAEPGFVLLTDDPIISADDGYMLVVSFFAISEEIDPSSIEVWVGGKNVTSLSQISPPLIVYKDETPQSGTQKAVIRARKEGKTVHSPIWSTEILPSSKALKEFTYQGTVNFASNYYNYSNDDALGYTKSDAATWADFYGNYGILNMQANLYFSSLEHSNSQPVNRYTLGFNIPHLEFFAGDYAPTFSQLTLNGKNLRGIYSRLYYKSLSLSVTHGQTVRKTTNELDLDSEVDGMQKSGTFKQEAFGTRIQYCDEDNFIFGINFTRHNDVISSLDSTYYIYEKVDEKGDKSTIYTTTAQENAVLGVDAQMHIRKPNLVIGAEIASSLWNTNTIPGAMTQEELEEYLGKDFFLDPQDLSRLFIINKNMIPIVPGRASIAWLTYVRTCFYNNLLNFQYSETGSAFNAFGSAYQIPDSKVISITDNFNVSKYFILSGGLNLIEDNLMKHKSETNNTTSWYLQSLIRIPQAPYFKFAYYNNSGKNEDNKDIAYEGELFQKVKNKSQNLIFGIGYNITQIPYVPTQVDISYQMGTDNNKQSDLDLTDNKNNNFNITMLNRFQMIPLTLQFAMTLNNNKNLLAITNKKGNNNNFFVGATYSLWEDKIKPYTNYRIVSASGAQGDRSYQYYTLGVEAYPIKSLSVNTNIALTDFNNKDNIPGDYSNFIWRVLLSQRF
>NC_020449.1|WP_071818977.1|1569378_1570056_+|FecR-domain-containing-protein
MKKIFLFAIILILTVNLLAVESVAIISASKGKVDLRRAAKVIKHKTGDFLQNNDEIRTGGESFAAYKYIDGSATVKVFSHSIVQVYASAKDKKLAKTVKLNQGSVFSQIKSDSGPFSVQTPTTVASVKGTGFMAKFDEQEQTKFIVTEGELELKILDKTETQSVAAGNTAIIQADGSFEIRPSTEEDIQEIELTELESMQEKEIRKMRIPVVAPNGQTRYIDITW
>NC_020449.1|WP_015425054.1|1568256_1569366_+|hypothetical-protein
MKRFLFILVIALLLPTLAVARADFSVTFSPQTIRVNSFNSASFDPFDPDQQPILTTLTITNTGTVPKRIDLKLVLEWNNIPLVETIFSSKENLNSWTLTNRDLITNQPSTYFDYKEGYAKITVKEAIKNSSTLKSAVLAGYFPDGDLKFKVWVREFSTASWTNNTNLPDAEFKIIIRNAGNITLLSPGVPIGKTPALVNGIPISFLWNSQLTDFNDYKLIIKEFPPNNPPTVNTIDRTGAVFYETPENTKENSGFVEFLPFTDGNYYAWKVTTALATEYNPKKQNTGNNILSSNWYVFQYVDEEKAAASISEFQAHLNMLQNSILLNLYTQGYVPAGIVIIDDKEFSGQEAINLIDALQGQEISVELKD
>NC_020449.1|WP_015425053.1|1567308_1568253_+|D-alanine--D-alanine-ligase
MEKIVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVFNGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMREDLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHSVLLEEYIPGRELTVTIIDSEAYPVVEIKPLEGWYDYTNKYTHGKTKYEAPAQIDDTVAKLLQLYALRLWKAFGLSGYARIDFRYDGLKPYFLEVNTLPGMTSLSLTPMAAKAAGMSFQELLQKIIYIAAKEGR
>NC_020449.1|WP_015425052.1|1566332_1567244_+|hypothetical-protein
MLEIELTYPKPVPNRSLNIWSNPVFMQTVAEISNFIPWHLVCYKGTTIVAVLPLYEKKILGCRVLKRSSLSYYQGLNLWLEENSLPARKLLDALQITMAIARGLKSNFKRIRINLTPETYDIRGFLWNKMQAVPFYTFVHNLNSELKPLPDKRRDLAQAEKQNYTFEEGLNIEEFIGLLKILKVKKNWNPDCDYQGLGDFIRILYREGMLRQMNLTQQGKIVSSNLILQDGKKVYNIYQATEDNALKKGACSLHTVKLIELLQKEGFQELDFCGSSIPEIARFNSALGLQLKLFFQIRSSAMV
>NC_020449.1|WP_015425051.1|1565976_1566333_+|response-regulator
MKPKLLLVDDDQLLREVIGDFLSSHGYEVDLADNADSALEKFEPGKYQLALIDYMMPGMNGLELMKILLKQDPKIFCLIMTGYPTVDSAFQSVVDGASDYIVKPFQLKELLNTIGSYI
>NC_020449.1|WP_018196882.1|1565350_1565563_-|cold-shock-domain-containing-protein
MKGKVKWFNKNKGYGFIITDDNKEYFVHWKSIVTNSPRELKVLEQDELVTFDLMETDKGIQAINIIRVNP
>NC_020449.1|WP_015425048.1|1563642_1565286_-|YgiQ-family-radical-SAM-protein
MPFLPVNQSDLKERDWDYLDIILISGDAYIDHPSFAAAIIGRTLEAAGFRVGIIPQPDWRNDSSFTVLGKPRLFFGITAGNMDSMVNHYTAQRKLRNDDAYSPDGISGKRPDRAIIIYTNIIKRLFKGVPIVIGGIESSLRRIAHYDFWQDKVRNSILADSKGDILIYGMGERPVTDLAILLQKGVPVSSIQNLPSTVVFSSTFPAKEDIILPEAEKCSAKETFYQMTRQFEDNYRTKTIFQKNAGRWLKHNPPAKPLTTKEMDSIYALPFAYQPHPVYAGHKIPAYEQIKDSITSHRGCYGGCNFCAIACHQGRNIQSRSETSLLKEAQKHTGTISDVGGPTANMYASFCGLDFPETCKRNSCLVPDICPNLQINHSVQLEILAKIGNLPRIKHLFIASGIRYDMAVNDDNYIEALATKYTGGRLKLAPEHSVSSVLRLMNKPQIEVFEKFCKKFYFYTNKAGLKSQIIPYLIIGHPGTTMEDAFELRNWLRKNKLKVEQVQEFTPTPMTISTCMYYTGLDYETGKPIHIPKPSEIRRQKELIINQ
>NC_020449.1|WP_015425046.1|1560537_1562436_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MQSSTYTASNIKVLKGLEAVRKRPAMYIGGTSERGLHHLVYEVIDNSIDEALAGYCDEIICTITTEGNIRVEDNGRGIPVDIQKDMGVPAVQVVLTVLHAGGKFDDKSYKVAGGLHGVGVSVVNALSEFLEVNIFKDGKEYFMRFERGLPVTELQVLGDTNKTGTVVTFRPDPLIFETTEFSFDYLTSRLRELAFLNSGLRIILKDERSGRVHDFKYEGGIKSFVEYLNQNKKPLFPNPIYISSVKEGMEFEVALQYNEGYQENIFSFANNINTTEGGTHLSGFKSGLTRAVNTYIKNADLLKNEKVSPSGEDIREGLTAVISLKIANPQFEGQTKTKLQNSEVEGIVNSAVYEKLMEYFEEHPAEAKNITMKSILAARSREAARKARELTRRKTVLESGSLPGKLADCTLSDPEKTELFLVEGDSAGGSAKQGRDRSFQAILPLWGKMLNTEKARVDKVLNNDKIQPIILALGAGIGQEFDISKLRYHKIIIMADADVDGSHIATLLMTFFYRYMRPVIEEGKLYIAMPPLFQVRKGKQKVYVYNEEERDKAIREFGEKGVLVQRYKGLGEMNAEQLWETTLDPKNRKMIAIKMDDAIEADRMFTILMGDEVEPRREFIQENARYVKNLDV
>NC_020449.1|WP_015425045.1|1557899_1560524_-|DNA-gyrase-subunit-A
MSETTNIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHFRKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYTEARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMPPHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIMRGETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIVIQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGVPQVVNMKEMLQNFIDFRHEVVLRRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEKFGLSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTELVEHKELRMNLIKEETAEIRDKFADKRLTTIIPAPAGSFNMEDLIADEMVVVTITHDGYVKRLPVDTYKVQARGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEASRTARGKAIVNLVKLAEGDRIKAFVTLKDFHPEQNIVMCTRNGLVKKTPLTAFSHPRSIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDYVISMTIATAQDQLENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAALMLVRDDDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVVRDISLVHSEPDEESLDKEVETLKAKPASNLEEFADGEDEEFAEEDEEEIEEMDESEEDLENEEDNE
>NC_020449.1|WP_071818978.1|1574829_1575480_-|RloB-domain-containing-protein
MKPRKNKPTRPFKNTVLCFCEGETEKVYLTCLKKDRYKNVHIELKPQISNAGFKNIFYDIEQLLAEPPETNYKYIFYVLDMDVIYGDNRINEYKNQKKSVESLDQAKERLTIIESRPCIEFWFLLHYKNTDKCFVNCDEIIVELCKHIPEYCKNQNYITSLYKELKNKLETARQRSEAICKKERVDNEDYSYSGMHILIRILDDLQNKTSPNNQIK
>NC_020449.1|WP_157860016.1|1575460_1576768_-|AAA-family-ATPase
MIITFSVQNFLSIRNKVTLDFRATSDKTLEDYYVVSVEKPKLRILRMAMIYGANASGKTNLLMALNFIKRFISDTSINKEIPIPITPFALDEDKSSIFEIDFLQKGVVYSYYLELNKKHIIQEELSYYPNGRKTLIFSRKLVDIKGFIYEYKWRNAAINEKQKDALELTVQNQSILSKIATIQYSGVLQEARNWFNTTLNPILSNKTDLFRFNYHNYLSSPQKEKKYKPLYLELLKRADFCIEDFNIEKKIIPLSDLPPSLRAEIEDQNKESEGDKTKNEIYWLKTEFTHKTPSGTYVLNYNMESMGTQRYFGLVGVLFELLYKNRVVPIDEIESSLHIDLIIHFITTFLRNKSQGQLIFTSQNTALLKEKDILRRDAIWIIERNEDGSTSLTSVSEYPVRKEHSIESIYRKGLIGGLPNLGTTLLEGENETKEE
>NC_020449.1|WP_015425061.1|1577424_1578483_+|zinc-binding-dehydrogenase
MKSNGCRYGTHRVIEPKGVLPQPAKILNNDMSEIWDNEMLIDVIRLNIDSASFHQIKNKLIAQGHQDLEKAFAEHAIELTNRTGKHKNEDTGSGGMFIGRVAAIGDKFEMKEEVKVGDKIASLVSLSLTPLKINKVKKVLLDKDQMEIEGQAILFSSGVYAKLPDDLDENLALSVLDVAGAPAQVERLVKPDDTVVIIGANGKSGILCNAVAKERAGICGKVIGVVRNENYIPTCKATGCDEVILAQATDAITIQKEVSRLTNGKMADVVINVVNTEDTELPSIMAAKDRGMVYFFSMATSFTKAALGAEGIGADVDMMIGNGYAHHHSEIALDLLRRNSVLMKIFKERYAE
>NC_020449.1|WP_015425062.1|1578497_1579745_+|lysine-2,3-aminomutase
MSKLIDIKSIATPEQWNDWHWQIKNRITTHAQLSKYIELQPEEEAVFKDKAFSFRMAITPHYLSLIDHSNPYDPIRLQAIPRIAESHISPSDMADPLSEDADAPVPGMTHRYPDRVLLLLTDQCAMYCRHCTRRRKAGEHDAPMPKENVEKALEYIKEHKEVRDVILSGGDPLTLSDERLDDILNRLSKIEHIEIVRLGTRTPVVLPQRFTDSLLNILQKYKFVWLNTHYNHPNELCEDSCKALAKIAETGIPMGNQSVLLKGVNDNVDVMKALVHKLVKNRVRPYYIYQCDLSEGISHFRTPIAKGIEIMESLRGHTSGLCVPTYVVDAPGGGGKIPVMPNYVISQMPGRVILRNYEGFITAYTEPEFVEQDKSKYRELCADEYKSTEGIMALMRGKKVAIGPAETKRNRRRKH
>NC_020449.1|WP_015425063.1|1579755_1580751_+|hypothetical-protein
MEFSWISGRRYKNIAIVGICKNAGKTTVLNYILAKYPFPWGILSTGRDGETEDTLFKIPKPKVKIPKGCFFCTDAKTLLQHGSGISILTKTSFQSGSRELWIVKSEKYLETEITGPASVSGQIACAELLQKMGAEKVLIDGSLDRKSIVLSNAVDAIILTAGASFGNQQAIIEELKRLITLSQIGTYLSPTLQKLAEQNKILIKNKGRWKQTGLVSLIANETKLLEILSKLEKPSHLYLPGAYTSSVNNRLGKHLSGIQLIFRHPECIKLSSNELDVFLKNHKPLALIPFKLKAIALNPKGIGNSDIDADEFHQNLRRTFKEYPLLDVMEI
>NC_020449.1|WP_015425064.1|1580755_1581700_+|cation-transporter
MTDRDNLTRVTVNLGLFSNILLSIVKTCVGILGHSAALLADGINSTSDVVYYIAVKIFMKQAQKPADVEHPYGHRQLESISAIVVGAFILTTGIAIFWESVNKVYDLLSKTEIGQPLSIWTLVIALFTFGLKIFLYTYTRKNIPKTKNPTLKALANDHLNDIMAAVAVVVGVLLGRLGYYWMDPAAGAIVAIYIIKTGVEIIMESSRELMDYLPDEDFVRELKTEAMAVEGVRSIEDLGIHRFGPYFTVNMTITVDGDISVDKGNIISDSVEKRLLDKFSTGLRQVHIHFHPYFEKHSSADPDPGSKTNIGVSL
>NC_020449.1|WP_015425065.1|1581696_1582941_+|M23-family-metallopeptidase
MNWGKDILLSFIFLLLATFCLISLMGINPKHPAEIKPDLQKPSEPWIIQTIPDGGSIFSVLANLNLPLKEVGLLAFKFGDYIDVSTIQPGDTLKILLSEDKQHIAKMVFVQEPTTRHHFTVSADSLVYSLEALPVKRVKRIMEGNLEETLDASLLAMGFAPQDKQAINNGLEAEINFARDARNGDFFRIFVEERIFEGKTLPGRKIFYVQYSGERTGTCELFRYEDEEENSVLNGLYTKEGKSCHSNGVGFPLSVIHLVSPFGRRLDPFYGNWANHQGVDYRAHYGTPVYAVANGKVTDAGYSGGWGNEIRIKHPSGLTTQYAHLSSMSVRKGQTLKKGQIIGRVGSTGRSTGAHLHFGLIKGKKYINPTNLKMVGTEKLNETQMARFKSQQQIILQDMENLMHPKPVIASVKK
>NC_020449.1|WP_015425066.1|1583353_1584079_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKKSSLHPLTHILMALLLSTFVFIAKKPVSLLCLTILALLYAVWRMENGWQKVFKTLWHTLPFLLVLAFFQIVFRRTGTLLWSYGILKISEEGVLISLQLTLRLLTVIYCAKALAVMDYTEFSKAFSAIRLPEELSFMLSYAIHLVPKFLGQLKGFVTGLKLRGIDAAGLSFSKRLRVYKQLSITALAELIRSSETAAIALELRGFRSEGKRSKLHRQKFSYRDLLCLLFFSVLVIIVTRI
>NC_020449.1|WP_015425067.1|1584075_1585425_-|ATP-binding-cassette-domain-containing-protein
MLFLQDFGISFAEQKLWEGINLKIPEGSIFHLKGPNASGKSSLLNAISGIIPEYVKAKTTGNILLGQTDLQAIPLKEKFHYLWHQLSDAEAQLFFPDCLSELAFALEHLALPPENIIAKINLAIAQFGLEKMLQRDPSTLSGGEKKLLLCAVAETIDPPLLLLDEPLNGLDKLASDLVLKWLKNKKEQGKIIVVADHNPLIETVADFSYTLPENPQPLTIDNSLFTEAVLNLQDKRDCAIKPFPEILYNIEELSFAYPNAELLFKDLSLKINSTENILLKGKNGAGKSTFLKLLTGLLKPNKGKIYLQGKHLQGLDPKNFAHFYYQSQITKENLLGISVKQNWLFWQLAIPELKDLPIKEDPLFTELSAGQQKMVSQQILPYMLSKFWILDEPFASLDENAGKQLLNLLQYKSRNYPGMLIVSHSLEAHRELFDIVLSFQNQTLQEEKG
>NC_020449.1|WP_015425068.1|1585424_1586351_-|hypothetical-protein
MKKYLCFLLLSGVMITLSSLEVIDTKGISHFYNNAELYKKEMQEIKTSREKDGTVRLNTWQGFRFDIWLKEQNLGDFATIRFESSDRYQVTLEKSEFDSLESYLITGQDGIPFEENMLRLIFPALREMQWIKGLERVVLEDFQPLMRPRRFYWLQETLKKYPLQQDPEPFVKTQGWYLRDILMDLSEAEEKQVILYSRDGLKQHLTYPLHLSGAILEKTAEQHYNLKSPQIPGGMWMKDVIYLQCDNNALISEDSINQLIRLAKILHWETTPEMQFRIVFEDREEVMNFTDALAEPQVFRGALYLELF

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Crispr_ID: NC_020449_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_24

1591856-1591969

Orphan

Consensus_repeat	Method
TAACGACGGGTTTTAACCCGGCGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_24

>merge|NC_020449|24|1591856-1591969|CRISPRCasFinder
TAACGACGGGTTTTAACCCGGCGAAAAGAGTAAAGGAAACCACTTATCTCTTATTTTTAGAAAAAGTTCCGTAGGAACGACAGATACTAACGACGGGTTTTAACCCGGCGAAAA

>NC_020449|24|21|1591856-1591969|CRISPRCasFinder
TAACGACGGGTTTTAACCCGGCGAAAA	GAGTAAAGGAAACCACTTATCTCTTATTTTTAGAAAAAGTTCCGTAGGAACGACAGATAC
TAACGACGGGTTTTAACCCGGCGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015425067.1\|1584075_1585425_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213192
NC_020449.1\|WP_015425080.1\|1599643_1599784_+\|rubredoxin	unknown	unknown	gnl\|CDD\|235475
NC_020449.1\|WP_015425069.1\|1586347_1586887_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|378252
NC_020449.1\|WP_044279019.1\|1592190_1592595_-\|transposase	unknown	unknown	gnl\|CDD\|372705
NC_020449.1\|WP_015425064.1\|1580755_1581700_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NC_020449.1\|WP_015425077.1\|1597742_1598471_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369706
NC_020449.1\|WP_015425070.1\|1586886_1587360_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|225042
NC_020449.1\|WP_015425066.1\|1583353_1584079_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_020449.1\|WP_015425068.1\|1585424_1586351_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_157860019.1\|1594350_1594686_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425065.1\|1581696_1582941_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_020449.1\|WP_015425078.1\|1598634_1599012_+\|desulfoferrodoxin	unknown	unknown	gnl\|CDD\|273011
NC_020449.1\|WP_157860018.1\|1592587_1593796_-\|transposase	unknown	unknown	gnl\|CDD\|226192
NC_020449.1\|WP_157860017.1\|1590001_1591090_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425076.1\|1594886_1597643_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_020449.1\|WP_044279021.1\|1600314_1600989_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_020449.1\|WP_015425063.1\|1579755_1580751_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279020.1\|1599865_1600318_+\|ferritin-family-protein	unknown	unknown	gnl\|CDD\|153104
NC_020449.1\|WP_015425071.1\|1587821_1589729_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373362
NC_020449.1\|WP_015425079.1\|1599032_1599623_+\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153100

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015425067.1\|1584075_1585425_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	4.60313e-44
NC_020449.1\|WP_015425069.1\|1586347_1586887_-\|ECF-transporter-S-component	gnl\|CDD\|378252	pfam09819, ABC_cobalt, ABC-type cobalt transport system, permease component. Members of this family of prokaryotic proteins include various hypothetical proteins as well as ABC-type cobalt transport systems.	1.19571e-14
NC_020449.1\|WP_044279019.1\|1592190_1592595_-\|transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.73986e-40
NC_020449.1\|WP_015425076.1\|1594886_1597643_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_020449.1\|WP_015425077.1\|1597742_1598471_-\|hypothetical-protein	gnl\|CDD\|369706	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	0.000675507
NC_020449.1\|WP_015425070.1\|1586886_1587360_-\|cytidine-deaminase	gnl\|CDD\|225042	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism].	7.58041e-71
NC_020449.1\|WP_015425066.1\|1583353_1584079_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.84392e-15
NC_020449.1\|WP_015425078.1\|1598634_1599012_+\|desulfoferrodoxin	gnl\|CDD\|273011	TIGR00320, Desulfoferrodoxin_homolog, desulfoferrodoxin. The short N-terminal domain contains four conserved Cys for binding of a ferric iron atom, and is homologous to the small protein desulforedoxin; this domain may also be responsible for dimerization. The remainder of the molecule binds a ferrous iron atom and is similar to neelaredoxin, a monomeric blue non-heme iron protein. The homolog from Treponema pallidum scores between the trusted cutoff for orthology and the noise cutoff. Although essentially a full length homolog, it lacks three of the four Cys residues in the N-terminal domain; the domain may have lost ferric binding ability but may have some conserved structural role such as dimerization, or some new function. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough. [Energy metabolism, Electron transport].	2.89651e-53
NC_020449.1\|WP_015425065.1\|1581696_1582941_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.20222e-45
NC_020449.1\|WP_015425080.1\|1599643_1599784_+\|rubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	2.71783e-14
NC_020449.1\|WP_015425071.1\|1587821_1589729_+\|hypothetical-protein	gnl\|CDD\|373362	pfam14885, GHL15, Hypothetical glycosyl hydrolase family 15. GHL15 is a family of hypothetical glycoside hydrolases.	2.43077e-13
NC_020449.1\|WP_015425064.1\|1580755_1581700_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.73321e-75
NC_020449.1\|WP_044279021.1\|1600314_1600989_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	2.14095e-55
NC_020449.1\|WP_044279020.1\|1599865_1600318_+\|ferritin-family-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	1.0306e-19
NC_020449.1\|WP_157860018.1\|1592587_1593796_-\|transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.65476e-26
NC_020449.1\|WP_015425079.1\|1599032_1599623_+\|rubrerythrin-family-protein	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	6.0876e-61

>NC_020449.1|WP_157860017.1|1590001_1591090_+|hypothetical-protein
MKRYLYVMLYLLLIMGCSTVPKVVPHPWNKTLSDEEIIQGSTIAIETTILSTPLIGSQELLEEEIAQKAKSLLERRGFYISNSNYQYKMKVLFSVEKQLETITTSMVQNSHYSGSGMTVKSGYGITLANLISETVQVSKSEVSTNQYDTYTYSFACEIYTASGKLIWKNDAIQKAYKFNVLDYITPMLQIAFSSLPKDENIYPRVPKIKETQVKNFLSVKVYQTYLRCPALPNLICFEDYWLDDYEYKPHKFKQNYSKNPQAFMAYIDLLQTAEFAIPGSKIKKWDNPLDMNNWRTVYLIGKYYLGNDQNPVNIVVKLKGTPSFYVVSKCNIVTDEEYNSYYQKYNLWVNKLTVFFDFFEKG
>NC_020449.1|WP_015425071.1|1587821_1589729_+|hypothetical-protein
MQKKGFKLLFCFFLMIFFNLCIIKPLEGISYPRTFNYYLDNFSQSQNSILVPALAQYDFLVLDMEMGEVNPQALSEIRSINPNIKILAYMTVEEITTNYCYPGTHPLRHQLQNEIQASWWLKTANSQNVSFWQGTWMLNCTPCCPEVNGKKWTSYFSSFITNEILSNSLWDGFFADCLFASVSWINSSIDCNNDSIIDDPQWLDAQWKLGIENFLTQLRQYNPNKLIVGNGNYYLWDNLNGMMFEELEGGNSNFGFNLSWAQFFYYQQFLDTFNQYPVCNLVIARQPNDNPYNYQHMRLILTATLMGSAYFGIDKGPDDHSDTWWYDEYNVDLGQPLESGQILGENPLYNGSFANLNYWQTEVHYPLNPSNSFLLGNEGGNTYAECHINNTDGVNWHYALKQDNNSSLYFLKYEPYLIEFRARADHNRIIQVTVSENFGNYNWLTSAITVELTTEWQNYTFIVTSMNTANLTPNQIRFIFFMGQENGTVCIDDVSIKHININRILKREFENGIVLCNPTSTSKTINLTRTYYHFEGSQAPQINNGLPCTSVNLPAYDGVILLSTPPQPLESPIVTINKTPEGILLNWQPVSGATSYRILRSDDPYTGFENIATITNTNFLDVLSNRKFYKVIAIP
>NC_020449.1|WP_015425070.1|1586886_1587360_-|cytidine-deaminase
MERPSWQQYFMEMAYLASKRSTCLRRKVGAVLIRDNQIIATGYNGSPKGVPHCEDIGCLREQQKVPSGKNQELCRGVHAEQNAIIQAAINGSSTRGAILYCTNQPCSICARLIINAEIKTVYIAEPYPDELGEELFREAGVELIQFDLQSNTLKKLI
>NC_020449.1|WP_015425069.1|1586347_1586887_-|ECF-transporter-S-component
MSIFRRFTVKDLIIITSIAALGIAIKPIINPVTKLISTPLGIPGGSITGGLYMLWLVLAVVIVDKPFTGTLYGLLQSILVLLIGMAGKMGAFSLVAYTAPGIVADLLFWLLPYKDKLITHLFLCGCANLTGSLISSAIFFQMPTVMIVFNTCMAFSSGILGGYLGFGIYQSLKAARIIQ
>NC_020449.1|WP_015425068.1|1585424_1586351_-|hypothetical-protein
MKKYLCFLLLSGVMITLSSLEVIDTKGISHFYNNAELYKKEMQEIKTSREKDGTVRLNTWQGFRFDIWLKEQNLGDFATIRFESSDRYQVTLEKSEFDSLESYLITGQDGIPFEENMLRLIFPALREMQWIKGLERVVLEDFQPLMRPRRFYWLQETLKKYPLQQDPEPFVKTQGWYLRDILMDLSEAEEKQVILYSRDGLKQHLTYPLHLSGAILEKTAEQHYNLKSPQIPGGMWMKDVIYLQCDNNALISEDSINQLIRLAKILHWETTPEMQFRIVFEDREEVMNFTDALAEPQVFRGALYLELF
>NC_020449.1|WP_015425067.1|1584075_1585425_-|ATP-binding-cassette-domain-containing-protein
MLFLQDFGISFAEQKLWEGINLKIPEGSIFHLKGPNASGKSSLLNAISGIIPEYVKAKTTGNILLGQTDLQAIPLKEKFHYLWHQLSDAEAQLFFPDCLSELAFALEHLALPPENIIAKINLAIAQFGLEKMLQRDPSTLSGGEKKLLLCAVAETIDPPLLLLDEPLNGLDKLASDLVLKWLKNKKEQGKIIVVADHNPLIETVADFSYTLPENPQPLTIDNSLFTEAVLNLQDKRDCAIKPFPEILYNIEELSFAYPNAELLFKDLSLKINSTENILLKGKNGAGKSTFLKLLTGLLKPNKGKIYLQGKHLQGLDPKNFAHFYYQSQITKENLLGISVKQNWLFWQLAIPELKDLPIKEDPLFTELSAGQQKMVSQQILPYMLSKFWILDEPFASLDENAGKQLLNLLQYKSRNYPGMLIVSHSLEAHRELFDIVLSFQNQTLQEEKG
>NC_020449.1|WP_015425066.1|1583353_1584079_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKKSSLHPLTHILMALLLSTFVFIAKKPVSLLCLTILALLYAVWRMENGWQKVFKTLWHTLPFLLVLAFFQIVFRRTGTLLWSYGILKISEEGVLISLQLTLRLLTVIYCAKALAVMDYTEFSKAFSAIRLPEELSFMLSYAIHLVPKFLGQLKGFVTGLKLRGIDAAGLSFSKRLRVYKQLSITALAELIRSSETAAIALELRGFRSEGKRSKLHRQKFSYRDLLCLLFFSVLVIIVTRI
>NC_020449.1|WP_015425065.1|1581696_1582941_+|M23-family-metallopeptidase
MNWGKDILLSFIFLLLATFCLISLMGINPKHPAEIKPDLQKPSEPWIIQTIPDGGSIFSVLANLNLPLKEVGLLAFKFGDYIDVSTIQPGDTLKILLSEDKQHIAKMVFVQEPTTRHHFTVSADSLVYSLEALPVKRVKRIMEGNLEETLDASLLAMGFAPQDKQAINNGLEAEINFARDARNGDFFRIFVEERIFEGKTLPGRKIFYVQYSGERTGTCELFRYEDEEENSVLNGLYTKEGKSCHSNGVGFPLSVIHLVSPFGRRLDPFYGNWANHQGVDYRAHYGTPVYAVANGKVTDAGYSGGWGNEIRIKHPSGLTTQYAHLSSMSVRKGQTLKKGQIIGRVGSTGRSTGAHLHFGLIKGKKYINPTNLKMVGTEKLNETQMARFKSQQQIILQDMENLMHPKPVIASVKK
>NC_020449.1|WP_015425064.1|1580755_1581700_+|cation-transporter
MTDRDNLTRVTVNLGLFSNILLSIVKTCVGILGHSAALLADGINSTSDVVYYIAVKIFMKQAQKPADVEHPYGHRQLESISAIVVGAFILTTGIAIFWESVNKVYDLLSKTEIGQPLSIWTLVIALFTFGLKIFLYTYTRKNIPKTKNPTLKALANDHLNDIMAAVAVVVGVLLGRLGYYWMDPAAGAIVAIYIIKTGVEIIMESSRELMDYLPDEDFVRELKTEAMAVEGVRSIEDLGIHRFGPYFTVNMTITVDGDISVDKGNIISDSVEKRLLDKFSTGLRQVHIHFHPYFEKHSSADPDPGSKTNIGVSL
>NC_020449.1|WP_015425063.1|1579755_1580751_+|hypothetical-protein
MEFSWISGRRYKNIAIVGICKNAGKTTVLNYILAKYPFPWGILSTGRDGETEDTLFKIPKPKVKIPKGCFFCTDAKTLLQHGSGISILTKTSFQSGSRELWIVKSEKYLETEITGPASVSGQIACAELLQKMGAEKVLIDGSLDRKSIVLSNAVDAIILTAGASFGNQQAIIEELKRLITLSQIGTYLSPTLQKLAEQNKILIKNKGRWKQTGLVSLIANETKLLEILSKLEKPSHLYLPGAYTSSVNNRLGKHLSGIQLIFRHPECIKLSSNELDVFLKNHKPLALIPFKLKAIALNPKGIGNSDIDADEFHQNLRRTFKEYPLLDVMEI
>NC_020449.1|WP_044279019.1|1592190_1592595_-|transposase
MGKTLTLDNEEVVRANGPERTVKSYRCEDCQDCPFVQKCIPYKNKSGKNLVYDPYLSPLRQETVHNLQSKEGKKLMKKRCIEPEAVFASIKWNSKFSRFTVRSLSKCKNQLLLVLLGHNIQKFYNASMATMTGT
>NC_020449.1|WP_157860018.1|1592587_1593796_-|transposase
MSYREYNQEQTDIFGLDINARIPEHHLVRFVNDLIENMDLTKLHAQYSPEGSPAYNPKMMLKIIVYAYMNGIYTCRKIAKAVRENINFIWLTGDQQPDFRTINTFAWTRCKDVLAEVFCKVVLMAEEKGYLELDSCFIDGTTLRANAGKNSYIWKKSALRYQEQVKTRVDNLFCRIKKLNEEEQLQYGDQDLREVGTQLEFLNELNVEEAEPEEIAQAVEKAQSELQKAVDTLKTHLPSNAPAIKNINHLLSELNKIQKLDVPKLEKYDQQIEIIGKDRNSASKTDNDATFIRMKDSLLAPGYVSSISTSNQFVTAVHLYNVPREAVEYTTLMDIHYTSLGTYPKQVIGDAAYGISVNLDYTHKKKIVSYLKPPDYKRDYWDSLLPGFVYEETKDQWVCPNG
>NC_020449.1|WP_157860019.1|1594350_1594686_+|hypothetical-protein
MAFWKAGENCESKLSQLKIVNLTRGLRLHRYHCVALTGFWEKGKVKRIEIRAFILTRGLRLHRYHFIALTGFWEKGKEKRIEIGAFILTRGLRFHRYHCVALTGFYEISTL
>NC_020449.1|WP_015425076.1|1594886_1597643_+|DNA-polymerase-I
MAEKLYLIDGTALLYRAHFAFIKNPLINSKGIHTSAIFGVINSFLHILENTQAAYVAISFDRKAPTFRHNLYEAYKAQRPPMPDELTAQIEPVKRFFELIGLKEIGLDGYEADDILGTLAKLYKDQFQIVFLTSDKDYCQLVDERSVMLDPMKDIVLDRDAVYAKYGVYPEQFIDYLALVGDPSDNIPGVSSIGPKTAAMLLSEYQTLDNIYANLDKLKPRLQEVLRENKENAYLSKQLAKIDTDVPIPKPDLEHLTFWAKDLRKAIPLLEEYEINSIKRKIELKYPETNTTKQQTEYQDDIFKEKEKPQEETAETEEKMPFSAVLVNTLNFVTLLKELKEAKQISLDTETDSPEPMRANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVLRHLEDALKGKLLLGHNLKFDLIVLARNGLELDNPLFDTMLAAYILDPGTLNYSLETCALNELNYKMIPISDLIGKGKNQSTFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFSVMANLFDTIELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFAGYEFNINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFNQTVTSTGRLSSSNPNLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQRKLSRELGISLNEAKDIIDGYYAQFPSIRNFINQCVNKARQQHYAETLFGRRLYLPNIDSKNQGLKSEAERIAVNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELLFEVQQEALEETKNIVKTCMESALPPKYAEKVHLKTDVGVGKNWFEAH
>NC_020449.1|WP_015425077.1|1597742_1598471_-|hypothetical-protein
MKRLVILLLALLLLAGCVQYDEELWINRNGSGHATIRVVHRSPYENPEEIMRKAALPGINLQSYDIHRKGPDVIYTINFKFKSIEAFNNVNDQLGAADFWGKITLNKEPGRRITFKRRIALGSQEQGEEEEGIEDILGMLQPENPVWTYKVHLPWKIISTNALPENVDRENGTVTWSFDTRKMWHKQELMTVELRKDFPWFLTVIGAVIVVLLIFLIHWMFRFPKKSHWRERIKHSENVEKS
>NC_020449.1|WP_015425078.1|1598634_1599012_+|desulfoferrodoxin
MIALRQMWHCPICGNVVEVIYVGGGELVCCGQPMQLLKENTVDAAVEKHIPVVTDLGDKIEVSVGSIPHPMEEKHYITCIEVLMEKKVLRKELKPGDEPKAKFCVKMDKVIAVREYCNVHGLWKA
>NC_020449.1|WP_015425079.1|1599032_1599623_+|rubrerythrin-family-protein
MSNKETRTAENLMKSFAGESQARMRYLYSAKTAKNEGFEQISNIFTETAENEKEHAKIFFKHLQKLGLEGEMINIISSYPVGWSADSTLKNLEYAAKGENEEWTELYPIFADVAEEEGFSDIAHSWRMIAKVEREHEKRFRKLYDNVKNQRVFIREEKVFWKCLNCGYIHEGTEAPISCPSCSHPQSYFELFIENY
>NC_020449.1|WP_015425080.1|1599643_1599784_+|rubredoxin
MQKYQCMACGWIYDPAENDDIPFEDLPDDFVCPECGVGKDMFEPLD
>NC_020449.1|WP_044279020.1|1599865_1600318_+|ferritin-family-protein
MQRKDFEEILDFAIAREREAIKFYQNLQNQAQFQDQKEMLKELEAMEQNHITIIEKLRQTGVKDEDIHKTPNLKISEYITADPETLDLSYQNILIKGMKREETSFLLYSEMSVKFPDPEISTLFRHLAADEAQHKKYFENLYDEWMRKGN
>NC_020449.1|WP_044279021.1|1600314_1600989_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MKLALDTTQNFGSIALADEKRVIYSAYFDIKITHSETLMPAIDYAFQFCNVERKELKEIYVCIGPGSFTGLRIGLATVKGIAFALGLPLYAFSSLELSALPASRLGKNILSAIDAKMKEVYFSYYDQAIKEIIPPAIMKPEELCQLHLDDFILCGSATEMLSPLLQKAGYNFHNLNPIMKIPSAAGLFFLPEMLPEKYVPQDIENLEPMYLREAQAQVKKKKEN

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Crispr_ID: NC_020449_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_25

1610523-1610646

Orphan

Consensus_repeat	Method
TCTCTTTATTTTCCATCTCTCCATCTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_25

>merge|NC_020449|25|1610523-1610646|CRISPRCasFinder
TCTCTTTATCTCTTTATTTTCCATCTCTCCATCTCGCCATCTCACTTTTTCATTCTTCTCTTTTTCTCTTTTTCTCTTTGTTAATATAAACTTTTTCTCTTTATTTTCCATCTCTCCACCTCGC

>NC_020449|25|22|1610523-1610646|CRISPRCasFinder
TCTCTTTATCTCTTTATTTTCCATCTCTC	CATCTCGCCATCTCACTTTTTCATTCTTCTCTTTTTCTCTTTTTCTCTTTGTTAATATAAACTTTT
TCTCTTTATTTTCCATCTCTCCACCTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044279024.1\|1610711_1611179_+\|ferritin-family-protein	unknown	unknown	gnl\|CDD\|153104
NC_020449.1\|WP_015425092.1\|1613839_1615234_-\|bifunctional-UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase/3-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|237296
NC_020449.1\|WP_044279022.1\|1606535_1607228_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_020449.1\|WP_015425085.1\|1607227_1607989_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NC_020449.1\|WP_015425089.1\|1611190_1612504_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NC_020449.1\|WP_044279023.1\|1608016_1608373_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425096.1\|1618390_1619734_-\|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPA	unknown	unknown	gnl\|CDD\|234769
NC_020449.1\|WP_044279020.1\|1599865_1600318_+\|ferritin-family-protein	unknown	unknown	gnl\|CDD\|153104
NC_020449.1\|WP_015425078.1\|1598634_1599012_+\|desulfoferrodoxin	unknown	unknown	gnl\|CDD\|273011
NC_020449.1\|WP_015425083.1\|1601132_1605299_+\|endonuclease	unknown	unknown	gnl\|CDD\|367881
NC_020449.1\|WP_044279025.1\|1616279_1616909_-\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922
NC_020449.1\|WP_015425100.1\|1624700_1626410_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|274186
NC_020449.1\|WP_015425087.1\|1608414_1609332_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_020449.1\|WP_015425079.1\|1599032_1599623_+\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153100
NC_020449.1\|WP_015425099.1\|1623422_1624676_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NC_020449.1\|WP_015425095.1\|1616939_1618394_-\|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPB	unknown	unknown	gnl\|CDD\|235292
NC_020449.1\|WP_044279021.1\|1600314_1600989_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_020449.1\|WP_015425091.1\|1613069_1613843_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NC_020449.1\|WP_015425093.1\|1615233_1616283_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NC_020449.1\|WP_015425080.1\|1599643_1599784_+\|rubredoxin	unknown	unknown	gnl\|CDD\|235475

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044279024.1\|1610711_1611179_+\|ferritin-family-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	8.46798e-19
NC_020449.1\|WP_015425092.1\|1613839_1615234_-\|bifunctional-UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase/3-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|237296	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed.	0
NC_020449.1\|WP_044279022.1\|1606535_1607228_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.11255e-11
NC_020449.1\|WP_015425085.1\|1607227_1607989_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	2.3743e-57
NC_020449.1\|WP_015425089.1\|1611190_1612504_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_020449.1\|WP_015425096.1\|1618390_1619734_-\|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPA	gnl\|CDD\|234769	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA.	0
NC_020449.1\|WP_044279020.1\|1599865_1600318_+\|ferritin-family-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	1.0306e-19
NC_020449.1\|WP_015425078.1\|1598634_1599012_+\|desulfoferrodoxin	gnl\|CDD\|273011	TIGR00320, Desulfoferrodoxin_homolog, desulfoferrodoxin. The short N-terminal domain contains four conserved Cys for binding of a ferric iron atom, and is homologous to the small protein desulforedoxin; this domain may also be responsible for dimerization. The remainder of the molecule binds a ferrous iron atom and is similar to neelaredoxin, a monomeric blue non-heme iron protein. The homolog from Treponema pallidum scores between the trusted cutoff for orthology and the noise cutoff. Although essentially a full length homolog, it lacks three of the four Cys residues in the N-terminal domain; the domain may have lost ferric binding ability but may have some conserved structural role such as dimerization, or some new function. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough. [Energy metabolism, Electron transport].	2.89651e-53
NC_020449.1\|WP_015425083.1\|1601132_1605299_+\|endonuclease	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	3.02197e-40
NC_020449.1\|WP_044279025.1\|1616279_1616909_-\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	1.95247e-21
NC_020449.1\|WP_015425100.1\|1624700_1626410_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NC_020449.1\|WP_015425087.1\|1608414_1609332_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.05531e-54
NC_020449.1\|WP_015425079.1\|1599032_1599623_+\|rubrerythrin-family-protein	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	6.0876e-61
NC_020449.1\|WP_015425099.1\|1623422_1624676_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.79355e-125
NC_020449.1\|WP_015425095.1\|1616939_1618394_-\|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPB	gnl\|CDD\|235292	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB.	0
NC_020449.1\|WP_044279021.1\|1600314_1600989_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	2.14095e-55
NC_020449.1\|WP_015425091.1\|1613069_1613843_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	5.84969e-131
NC_020449.1\|WP_015425093.1\|1615233_1616283_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	6.01785e-128
NC_020449.1\|WP_015425080.1\|1599643_1599784_+\|rubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	2.71783e-14

>NC_020449.1|WP_015425087.1|1608414_1609332_-|ROK-family-protein
MNIFLGIDIGGSSFKYGWGNCEEGLQSYQTLVLQRKNIDDFFAVAKELFNDVDSKIGLNNIKGIGIGMPGAIDKTTGLVTENNPNLPFWVEHHPRELLPENCNIPFAFDNDANLMALAESYTQKKNYVIGVTVGSGIGCGIVIDGKIYHGAYGFAGELGHICIVDKGLKCNCGKNGCLEAYSSGEGLRRRLALKNPRYAEMDLSAILAIKETDTVVADYIKQGQLMLAIALSCLATCLDPEIIIIGGGAMDLGLYYIEELESEIRKRLPAAHSAKVKVAKAINGNKAGVLGAIKLIEDKFNSKEE
>NC_020449.1|WP_044279023.1|1608016_1608373_-|hypothetical-protein
MKKTMLILALMAMLMLIATAGYAYKGSPIESFDITPNPMFKECVISLAVSVPLNINVQIQSCDGKVICDLYEGFVGKDIYLNWERTDSCGNYVPDGEYLVVVNFSTRYTSLKKTLILK
>NC_020449.1|WP_015425085.1|1607227_1607989_-|ABC-transporter-permease
MQHNRKKSLRDFFLFLEETVTELLHIKHNRHVSLLVVIRQILFTGVEALPLIGFIALAIGCLTIMQGYAFLSNFGQGIWVHIILVRVVVGELSGIITALVVIARSGTAISTELGNMVVNREMQLLKSFDIAPMGYLVVSRILGVVISMLVLTLYFNIIAVLGGWLFAQFFNHLSFGAFMNDFLSVLTFPYILMTILKSVIFGFVIAITASYEGMSVYRASTEVPQRTIKAVVISIFSVLILDLIISWLFWIGA
>NC_020449.1|WP_044279022.1|1606535_1607228_-|ABC-transporter-ATP-binding-protein
MHIAFKNVSINGLLHNFNLNFTTDGCTVLYDPCEKYSSTILIALMGLYNLDEGNILLDGISLEEYCRQNSLISTFSLVFDEGIMLSNLSLRENLLLPWNKRFASEDYNAFEQELKLLMEELNLNCGWELRPAYLSPAERKYFCFIRSLLLKPKIMLIDDPYYLFNKEERRLLLGFLQKHSKKRGGTASSGYTKSGNREELCLQEMLIGTSDDDFTGEIATQVIDLSEICY
>NC_020449.1|WP_015425083.1|1601132_1605299_+|endonuclease
MRKTILCLLMLIVSISIIYGDYFVNFEGTNETKTSYASGNVTLSGLSWNMTEVLIGTLDSDWKNGTRSARLRGRGTSAMTMLENKTNGLGTLSFYYRRYSTEAQVDWKVEYSIDNGSSWTQIGSTFTAPASDTPSLFSEQVNVSGNVRIRIKRATESGTTDKRLNIDDITLTDYTAAEPTLILDPTVLIGFTYDLGEGPSASQSYTLSGAYLSPSSGNITITGSSSFEVSADNVTFSNSFSLPYSGGILSPATLYVRLKAGLSEGNYLNENITHSGGGASVFLAVSGSVTSTSVLLTAEGYLEDFTSFTSLESLPFGWTLSDQYTYGGDFGTGSAGGLRGNGVLGIQLTASAPNNALTATLTLKNQTGATINNLNVAYQGKVARTDQTGTPKWVVSVNGTEIPELEYSTAEGINQQKSAIVTGLNVAVGENIIIQWFTTSAGTSGTRRQIGIDDVNINTNIPVNPLINVTANLVTFQTAQGTPSEPQSYFISGIDLSQNINISAPNGFEISVDGGLTYATYTSVLSTYEGNVFVRMTGTAVGTFGGNIIHTSSGATDVYLPVAGIVTGATGYAVDLFFSEYIEGTSYNKAIEIFNGTGAAIDLSDYKVELYANGSSTANNTLVLSGTLENDDVYVISHPNANEDILAITDQTNMVANFNGNDALALVKISTGAYVDIFGVIGNDPGTAWLGENNYTTLNSTLVRKSSVAQGITQNPTGTGAYAFTTLVTEWDLYPVDTIDNLGYHNFATTPQEIEPPTLQASNLIAYPGNTDITLEWTPGNGARRLIKINTINSFTPPVDGSNPTANNVYSGNGEQVIFNGATQIVEGIPLNGCNVSGLTPATTYWFRSYEYNGSGSYTRYNTSEAINNPISATTTNTQSSGYYAGITGYGSTLKTNLHNLIRTTHTTRYSYDALWIKLPYTDEDPNNTDNIIEIYTGWSVPKSYYGGGTSQWNREHTWSKSHGDFGETPPAGTDLHHLRPCDSTVNSAKSNKDFDYAPNPYIDSSPYNGYSSDTGCNTSTYAWEPRDEDKGDVARMIMYMAIRYEGTDTSFDLEIVDNINTSGPNYGKLSTLLQWHIIDPPDAREMQRNNRIQELQGNRNPFIDEPMYAYQIWAPMPLNPTNITQTGFTANWTAPISATKYYFQLATDANFTNIVPGYDNLDVGLTLSRNISGLSNGYTYYYRLRSYFTSGYSMYSPYQEVTLTLPASAQLSSGTALTEGNLNGAILQLTLTNTTWRDNTLLISSFTLNNAPAGLSLLSVQYLSATAAQIVLSFDNTDFDANILNFSVTINALEINNGSNLTTNTLTIIAYIECPLSIQIQGSQLILNIQEVSGANLYKVFSSTDPYGVYTEISTSGIFDPLVPNRWSYTIPADERRFYRSAAVRNP
>NC_020449.1|WP_044279021.1|1600314_1600989_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MKLALDTTQNFGSIALADEKRVIYSAYFDIKITHSETLMPAIDYAFQFCNVERKELKEIYVCIGPGSFTGLRIGLATVKGIAFALGLPLYAFSSLELSALPASRLGKNILSAIDAKMKEVYFSYYDQAIKEIIPPAIMKPEELCQLHLDDFILCGSATEMLSPLLQKAGYNFHNLNPIMKIPSAAGLFFLPEMLPEKYVPQDIENLEPMYLREAQAQVKKKKEN
>NC_020449.1|WP_044279020.1|1599865_1600318_+|ferritin-family-protein
MQRKDFEEILDFAIAREREAIKFYQNLQNQAQFQDQKEMLKELEAMEQNHITIIEKLRQTGVKDEDIHKTPNLKISEYITADPETLDLSYQNILIKGMKREETSFLLYSEMSVKFPDPEISTLFRHLAADEAQHKKYFENLYDEWMRKGN
>NC_020449.1|WP_015425080.1|1599643_1599784_+|rubredoxin
MQKYQCMACGWIYDPAENDDIPFEDLPDDFVCPECGVGKDMFEPLD
>NC_020449.1|WP_015425079.1|1599032_1599623_+|rubrerythrin-family-protein
MSNKETRTAENLMKSFAGESQARMRYLYSAKTAKNEGFEQISNIFTETAENEKEHAKIFFKHLQKLGLEGEMINIISSYPVGWSADSTLKNLEYAAKGENEEWTELYPIFADVAEEEGFSDIAHSWRMIAKVEREHEKRFRKLYDNVKNQRVFIREEKVFWKCLNCGYIHEGTEAPISCPSCSHPQSYFELFIENY
>NC_020449.1|WP_015425078.1|1598634_1599012_+|desulfoferrodoxin
MIALRQMWHCPICGNVVEVIYVGGGELVCCGQPMQLLKENTVDAAVEKHIPVVTDLGDKIEVSVGSIPHPMEEKHYITCIEVLMEKKVLRKELKPGDEPKAKFCVKMDKVIAVREYCNVHGLWKA
>NC_020449.1|WP_044279024.1|1610711_1611179_+|ferritin-family-protein
MTLEDSYRMVIAEEIRAQKMYQALAKSFAKPETSNVFKELVVLEKMHEEKVRSAFAKEFPGQTITLQEEPIKEMQGVNLNDPQVVLEFAITKEEESVELYKNMAEQTREPEIKKQLLQFAKEEEGHKSILLSEIQRLQGALQWFDPSELSGLMED
>NC_020449.1|WP_015425089.1|1611190_1612504_+|replication-associated-recombination-protein-A
MANKDQSTLFDREELSTKTVPLAEKLRPQTLEELLGQTKLIAENSPLRQMIESGEYHSFILWGPPGSGKTTIARIIEKNSGYNFIRFSAVLASISDVKAVMKEADYLHRTQNKRSILFIDEIHRFNKSQQDAFLPYVESGAIILIGATTENPSFEVIPALLSRCTVFVLEALSENDLKIILKRGFAELKLEEDEEIINWMAQNAGGDARRVLNDLELVLPYLQKKPHPKTEELAKFLAKKTMFYDKNREEHYNLISALHKSLRGSDPQAGLYWLARMLEAGEDPRYIVRRLIRFASEDVGLADPNALVQAIAVKEAVLFIGMPEASTALAQLVVYLATAPKSNALYTAYEEAAEDARKTSHYGVPLHIRNAPTQLMKDLNYGKDYHYDHEYEYKYYYQKYFPEQMPEKIYYKPGTYGFEKEIQKRIDWWAKLKKEQK
>NC_020449.1|WP_015425091.1|1613069_1613843_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MTIIHPTAIMEEGAVIGDNCYIGPYCHIGKDVVLGSNNNLIANVTILGNTIIGDGNKIFPYAVLGTEPQDLKYKGEPTRLRVGSNNTIREFVTINCSNQMEEDTVVGDNNLLMEYAHIAHNCQIGSGCVIANVVQCGGHIHIGDFATVGGLTAIHQFVHIGAYAFVGGASATNKDIVPFSRGQGNPYKTVGLNSIGMMRKGFTSETIAAIKEIYNLFYRSGLNTSQALEKALQIPNPTPEQIIFIQFVQNAQRGISN
>NC_020449.1|WP_015425092.1|1613839_1615234_-|bifunctional-UDP-3-O-[3-hydroxymyristoyl]-N-acetylglucosamine-deacetylase/3-hydroxyacyl-ACP-dehydratase
MEYKQTIGGESTYTGIGLHSGEISTIRFKPAKADEGIVFIRTDLPGKPKIPADIDHVVDISRGTTIGINGATVATIEHVLSAIAGMRIDNICIEINGPEAPVADGSAVVFLNLLRQCGIVQQDSEREYFELDSPISFSAPEDNVDIVIVPSNELKITFMIDYKHPYLGTQYTWLPSLDNYEKDFAGARTFCFINEILELKNMGLIKGGSLENALVIAEPNISEAELKHLQDIFGYHKPITVSPEGILNSHPLRYYNEFVRHKVVDLIGDIALLGVPIKGHILAARSGHKTNVELVKKLRQIQKKHQLQKIYQKDKSKDVVFDINAILRILPHRYPFLLVDKIIEFIPGESLVGIKNVTINEPFFQGHFPGHPIMPGVLIIEGMAQAGGIMLLNQMDNPQNYVAYFASIDNVKFRKPVLPGDTLRYELKVISLKRSLAKMHGETFVEGEKVAEGDFLAMIMEREK
>NC_020449.1|WP_015425093.1|1615233_1616283_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MKRFNTPINSELLTQICQGELKGKIPSVLCKVGEPEEADEQTIIFLEQEKLLEKVKASSAGLIITTEKFISELPERALLLVQKPYYSLMRLISWWLEQENKDFIYAIQPTAIVAEDVRFEGEVAIGSNVVIGSGCILGKGVIIGEGCSLGKNVSVGAGTKLYPNVCVYDDCVIGRNCILHSGVIIGADGFGFMLIEGIQQKIPQVGNVVIGDGVEIGANSCIDRATLGSTIIGNGTKIDNLVQVGHNCIIGEHSILCAQVGLAGSTVVGDYVYLAGQVGIADHLQIGNRAMVGAQSGVSTNIPDDGRYFGYPALEANLTKRIMAVQKNLPEMYHFYLKAKKQETENGEK
>NC_020449.1|WP_044279025.1|1616279_1616909_-|OmpH-family-outer-membrane-protein
MKKYILTLSVLLALFAFAYAQPVKLGFVNTDRLLLDSNEAAEVARLFALDKQNWTNQIKSLDEEIKQMERDFEIRKLTMNDAAKREAQSRIDTKKAEAGRLLEEYFGDGGKAEQRYRELIDPLTLKIHNLIKKIAEDEKYTMIFDVSMGSVLYALPALDLTDQILLELNKDTIKPTEGTTPEPPKPEGEIPPEIKPPEGFGDEFKPDKL
>NC_020449.1|WP_015425095.1|1616939_1618394_-|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPB
MSKTIFEHSTDGRKGVTLPKREIDIPVATMFPETMLRTKKARLPEVSELDVMRHYITLSQKNHFIEKGLYPLGSCTMKYNPKLHETLIRDSAFTSLHPYQPEETLQGALELMYELQKDLAEIAGMAGVTLQPSAGAQGEFTGIKIVSAYHKAKGNTHKDTIIIPDSAHGTNPATCSLVGYKTVELASNEKGRCNIAKLRELVNENTAGIMITNPSTLGLFETQIEEIADIIHSVDALMYMDGANLNALLGIVQPGKIGFDLMHFNLHKTFATPHGGGGPGSGPVAVNEKLLPFLPVPVITKDEKGYHLSFSNEKTSIGKVHSFYGNFAVLIRAYIYIKMLGAEGLQRVSENAILNANYLMKRLNPYYHIEHQEPCMHEFVMDGTRQKKESGITTLDIAKRLLDKGFHAPTIYFPLIIPEAMMVEPTETESLESLDAFATAMIEIAAECKENPELVKEAPLTTPVRRVDDARAVKMLEPIFPLQD
>NC_020449.1|WP_015425096.1|1618390_1619734_-|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPA
MPYISNTERDRQKILKTIGVNKFEDLLTAIPEELRMKKPLTLSEPLSELEITKNIQAKKGKNISCEKVNSFLGGGIYDHFVPSAIETIVSRPEFLTAYTPYQAEVSQGTLQYIFEYQTLICELTGMEIANAGMYDGASSIAEAILMAVRKNHLTKAILPATLNPNYVQLIKAYTEGNGIELLFAPEKDGVTDLSALASMLNDTIGSVVIQTPNFYGNIEDAKAIESIVHKNPKCLLIACADPVSLAILMPPAEYNADIAVGEGQALGNNMFFGGPLFGFFATKLDMARLMPGRIVGGTIDKDGKKAYVLTLQAREQHIRRAKATSNICSNESLCTLSAVVYLCLLGKEGLVEIATQSAQKAHYTANELCKIPGLALAYPKTYFFKEFVLKTPKKAEEIIKALLSENIYAGIDLAPYGKPDELMIAVTEKKTKAEIDSFVQAMREVVK
>NC_020449.1|WP_015425099.1|1623422_1624676_-|type-II-secretion-system-F-family-protein
MPNFAYIIKDAKGARIEGMLKAETLDMAEDKLAKEGNTIISVKAAAEGAFKGKLSLFDKVMLAIYKFRTGVSLKSLVFFTRQLSTMFSAGLTIEKAISDLEKEEKSKKFAKVLRKLSDDIRKGYSLSEAMQQHPGVFNPLYIALVTAGEVSGTLHTVLDELADYLEKMEDTRRKVYSALAYPIFIVIFLCFVVWGMFYYIIPMFADVYANFHADLPAPTTLAINISHFITNNVFMFIVIVLLVIFTFFLINLTDKGRYVFDSIKLKIPVIGKVISNSIMSKFSRTFSILMAAGVPIMDTMELTENVVQNAVIESAVRKARVMVKEGYGVANAFRRTGMFPPTLLQMIATGEETGDMDKLLSKAAEFYEKLVDSVIDRLTSLIEPLLIIFMAVIVGSIIVVIYLPIFDLGEAMSQGLR
>NC_020449.1|WP_015425100.1|1624700_1626410_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MVYNPQFARLGDILVHEGYITEEQLKDALLKQGNFGLKLGETLIKLGYLTENELLEALHKQLGYDVVQDKELMDLDINIVSSIPEPYAKENKVLALREEGDGVVVAMTDPENLIVSDSLEKILGKNIKPVLIGNSSLQDAIEKYYKSIRTTTEVEDAVGGFEFVAVDEDENEITIAAATEDVDAPVVKMINLIINEAIKAGATDIHIEPLTKISRIRYRVDGALREVMTPPIGMHPSLISLVKVMSKLNIAERRLPQDGHISLKTAMKSVDVRVSITPTVLGEKVVMRLLDKGEFGFKLTTLGFEEDDMDIFKKIIRRPYGIIIVSGPTGSGKSTTLHAALKEIENIESNIITVEDPVEYRLEGVTQIETKEQIGLTFGSALRSVLRQDPDIVLIGEIRDEETADIAIKFSLTGHLVFTTLHANDAPATITRMIDIGIKPYLVGSSLSLVMAQRLVRKICKYCIKDYIPTEQEIQDAGLTPEEASKINFKIGTGCVHCDNTGYSGREGIFELLTINPEIRRIIYEGGNQDLIREAALRNGMRTLHDAAITKMKKGITTIKEVIKMTVVE

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Crispr_ID: NC_020449_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_26

1707974-1708072

Orphan

Consensus_repeat	Method
GGAAGGCAAGTGAAAATTGTGAGTCAAAAAAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_26

>merge|NC_020449|26|1707974-1708072|CRISPRCasFinder
GGAAGGCAAGTGAAAATTGTGAGTCAAAAAAGGAGAGACCAATAATTAGTGGATTGTGGTTTTGAGGAAGGCAGGTGAAAATTGTGAGTCAAAAAAGGA

>NC_020449|26|23|1707974-1708072|CRISPRCasFinder
GGAAGGCAAGTGAAAATTGTGAGTCAAAAAAGGA	GAGACCAATAATTAGTGGATTGTGGTTTTGA
GGAAGGCAGGTGAAAATTGTGAGTCAAAAAAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015425178.1\|1701417_1702350_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187566
NC_020449.1\|WP_015425185.1\|1708833_1709892_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_020449.1\|WP_015425191.1\|1713887_1715099_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|132012
NC_020449.1\|WP_015425184.1\|1708087_1708822_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279045.1\|1717011_1717761_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobB	unknown	unknown	gnl\|CDD\|237731
NC_020449.1\|WP_015425195.1\|1716397_1717015_-\|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	unknown	unknown	gnl\|CDD\|236320
NC_020449.1\|WP_015425183.1\|1706857_1707127_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_020449.1\|WP_015425180.1\|1702924_1704325_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
NC_020449.1\|WP_015425176.1\|1699688_1699982_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NC_020449.1\|WP_015425194.1\|1716181_1716394_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NC_020449.1\|WP_015425177.1\|1700098_1701421_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NC_020449.1\|WP_015425173.1\|1698232_1698904_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_020449.1\|WP_015425179.1\|1702346_1702922_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|193584
NC_020449.1\|WP_044279044.1\|1712700_1713891_+\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|224936
NC_020449.1\|WP_044279042.1\|1710179_1710917_-\|DUF1295-domain-containing-protein	unknown	unknown	gnl\|CDD\|275364
NC_020449.1\|WP_015425192.1\|1715219_1715849_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275145
NC_020449.1\|WP_015425174.1\|1698900_1699431_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234650
NC_020449.1\|WP_015425182.1\|1704348_1706580_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_020449.1\|WP_015425175.1\|1699431_1699662_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|379029
NC_020449.1\|WP_044279043.1\|1711151_1712366_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015425178.1\|1701417_1702350_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.26519e-113
NC_020449.1\|WP_015425185.1\|1708833_1709892_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.08215e-37
NC_020449.1\|WP_015425191.1\|1713887_1715099_+\|amidohydrolase-family-protein	gnl\|CDD\|132012	TIGR02967, guanine_deaminase, guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	4.09495e-15
NC_020449.1\|WP_044279045.1\|1717011_1717761_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobB	gnl\|CDD\|237731	PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional.	2.70642e-47
NC_020449.1\|WP_015425195.1\|1716397_1717015_-\|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	gnl\|CDD\|236320	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF.	1.77833e-73
NC_020449.1\|WP_015425183.1\|1706857_1707127_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.48143e-49
NC_020449.1\|WP_015425180.1\|1702924_1704325_-\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
NC_020449.1\|WP_015425176.1\|1699688_1699982_-\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	9.01625e-40
NC_020449.1\|WP_015425194.1\|1716181_1716394_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	3.85362e-20
NC_020449.1\|WP_015425177.1\|1700098_1701421_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NC_020449.1\|WP_015425173.1\|1698232_1698904_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	5.54494e-121
NC_020449.1\|WP_015425179.1\|1702346_1702922_-\|hypothetical-protein	gnl\|CDD\|193584	cd09895, NGN_SP_UpxY, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), UpxY. The N-Utilization Substance G (NusG) proteins are involved in transcription elongation and termination. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS (lipopolysaccharide) biosynthesis genes. NusG SP family members are operon-specific transcriptional antitermination factors. UpxY proteins, UpxY proteins, where the x is replaced by the letter designation of the specific polysaccharide (UpaY to UphY), are a family of NusG SP factors that act specifically in transcriptional antitermination of operons from which they are encoded. UpxYs are necessary and specific for transcription regulation of the polysaccharide biosynthesis operon. Orthologs of the NusG gene exist in all bacteria, but their functions and requirements are different. The NusG N-terminal (NGN) domain is similar in all NusG orthologs, but its C-terminal domain and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggests that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.	1.62064e-20
NC_020449.1\|WP_044279044.1\|1712700_1713891_+\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.76311e-131
NC_020449.1\|WP_044279042.1\|1710179_1710917_-\|DUF1295-domain-containing-protein	gnl\|CDD\|275364	TIGR04571, LmtA_Leptospira, lipid A Kdo2 1-phosphate O-methyltransferase. This family describes LmtA, which methylates a phosphate on the Kdo2 sugar of lipid A. The model is classified as exception (more specific than equivalog) to reflect that its scope is limited to the genus Leptospira, whereas homologs with matching activity might exist more broadly. Members of this family belong to the broader family of pfam04191, phospholipid methyltransferase, which includes a characterized yeast enzyme that acts on a range of unsaturated phospholipids. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	6.3275e-64
NC_020449.1\|WP_015425192.1\|1715219_1715849_+\|radical-SAM-protein	gnl\|CDD\|275145	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type. Members of this radical SAM domain protein family appear to be a form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in preQ0 operons species that lack members of related protein family TIGR03365.	1.4745e-81
NC_020449.1\|WP_015425174.1\|1698900_1699431_-\|hypothetical-protein	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	6.52596e-09
NC_020449.1\|WP_015425182.1\|1704348_1706580_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_020449.1\|WP_015425175.1\|1699431_1699662_-\|KH-domain-containing-protein	gnl\|CDD\|379029	pfam13083, KH_4, KH domain.	2.10484e-24
NC_020449.1\|WP_044279043.1\|1711151_1712366_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.45333e-34

>NC_020449.1|WP_015425183.1|1706857_1707127_-|30S-ribosomal-protein-S15
MPLKPEAKQAIMAEFKLHESDTGSPEVQVALLTQRIKDITEHLKEHPKDFSTRRGLLKLIGQRRRLLDYLKKKDITRYRNLIKTLGIRK
>NC_020449.1|WP_015425182.1|1704348_1706580_-|polyribonucleotide-nucleotidyltransferase
MHNFNITRRETDFCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTVDYIEKMYAAGKIPGGFFKRESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVLSFDGVTDPSTMGVFGASLALSISDIPFNGPIASVTVGYIDNQFVVNPHFNEIETQSKLNLTVAGSESSIVMIESAASELSEEMMLDAVFTGHKEIQKLCALQQDFISACGKEKVEVVLDSIPEEIMNKVENAFGAKIAEATVIFGKQERQDAFDAAEAEMVEMFSQQEDTDLSPWEETERYYKMAFDELIRRYVRDSILRKQHRVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQSLGTLTLGGGTDEQVIDGLETEYKKSFYLHYNFPPYSVGEVGRIGPTGRRELGHGNLAERALKAVLPDKDSFPYTIRIVADTLESNGSSSMASICSGCLALMAGGVPIKAPVAGIAMGLIMEGEDYVVLTDIMGLEDHLGDMDFKCAGTREGITAMQMDIKISGITREIMQIALNKAKSARFKILDIMAECIAEPRSELAPWAPRIESFKVPIDKIGEIIGPGGKMIKSIIEECQVQIDIQDDGTVRILSPDKESINKAKSIIKGIAVDPVAGDMFEGQVTRIEPYGIFVKILGGTKEGMVHISEMYTGRINHPLDMVKLGDKVQVRTLGMDKGKLSLSMKGVAGNPEPHPDAHREEQQNYHQQNRDDRNRGRNSGRNDYHRHHR
>NC_020449.1|WP_015425180.1|1702924_1704325_-|adenosylhomocysteinase
MDYKIADLSLAEWGRKEIDLAEAEMPGLVALKERYRHRKPLAGAKITGSLHMTIQTAVLIETLVELGAQVRWASCNIFSTQDNAAAAIAKRGIPVFAWKGETLNDYWWCTLQALSWEEGPDLIVDDGGDATLMVHEGYRLEEQYKQTGKLPEVDAENAEMRIVQELLINQLTIDPYKWHRAVKCLRGVSEETTTGVHRLYQKRDEGTLLFPAINVNDSVTKSKFDNLYGCRESLADGIKRGTDIMVAGKIVMICGYGDVGKGCAQSMRGLGARVVISEIDPICALQAAMEGYEVNTVDNMVEIADIFITATGNCDVIRVDHILKMKNNAILCNIGHFDNEIQVNKLYEMEGVEKVNIKPQVDLIKLPNDKAIILLSEGRLVNLGNATGHPSFVMSCSFSNQVLAQIELWQNEHEINVYTLPKKLDEEVARVHLPKLGAQLTQLSKKQAEYINVPIEGPYKQDYYRY
>NC_020449.1|WP_015425179.1|1702346_1702922_-|hypothetical-protein
MATHKPVYVDELYGELALFTDDRKWVVVHTKPRCEKKLADYAKQHQITYYLPQYTSKRVYQRRKVDVNKVLFPSYVFVGIDFKGKQELLISGYTVNFLKVNAQKELIDELQAIYYGRQKNVQMEPGLWLEKGLEVEIVNGPLKGIRGVVEDQSKLTEVRLQVNILKQAVLVKVRTQDIKIIGEFEIVEIDE
>NC_020449.1|WP_015425178.1|1701417_1702350_-|NAD-dependent-epimerase/dehydratase-family-protein
MKILVTGGAGFIGSNVADAYLQAGHEVVIVDNLVTGNRRNINPKAIFYEMDICDESLSEVFAKEKPDMVNHHSAQISVPLSIENPLLDVINNVYGWVNVLQNCVRTGVKKVIYISSGGAIYGEAEEYPTSEKYNPKPLSIYAINKSVGEDYLYFYRHQYGLNYTVLRYANVYGPRQISQGEAGVVSLFTEKLLKGEIPTVYRYDNEPDGMIRDYVYVGDVVQANLLALERGEGEVFNIGTSIPTTTKDLYYAIAKQLGINREPYYGPARKGDLHRSLLSCEKAKKVLGWKPETGLSEGISQVIKYFKELQ
>NC_020449.1|WP_015425177.1|1700098_1701421_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MKIAVIGSGYVGLTTSACFAEMGNTVISVDKDENKIEMLQAGKVPIYEPGLEDMILRNMTAKRLNFTLDTKQAVQDSQIIFIAVGTPPGEDGSADLQYVIAAAEEIASYLNEPKIIVNKSTVPVGTADLVNEKIQEVLNARGVDINYAVVSNPEFLKEGSAIDDFMSPDRVVIGTDNPKAGEIMRTLYEPFCRTNDRILIMGIRSAEMAKYAANSFLATKISFINEISRLCDAYDADIAEVRNGMCSDSRIGYKFIFPGVGYGGSCFPKDIKALINMSRKVGYEPRILTAVEEVNSEQKKVLVEKVKAHFGKNLKGKTFAVWGLAFKPQTDDMREAPSVVIINELIAMGATVKAYDPVAMQEAKKVFGNNNSVTLCADEYETLKDAVAMLLITEWHQFRYPDFERMSKIMQQKVIFDGRNQYNPKAVKEMGFTYYGIGRR
>NC_020449.1|WP_015425176.1|1699688_1699982_-|30S-ribosomal-protein-S16
MVKLRLRRMGAINQPFYRIVAVDSRKKRDGKYIECIGWYDPKPDPSKIKIDTERALYWLGVGAQPSDTVRSLLRKAGVLQIWHNSKQKKNQKTAEAE
>NC_020449.1|WP_015425175.1|1699431_1699662_-|KH-domain-containing-protein
MKDLIEFIVKALVDDPSEVNITEITGDKITLYELRVSKADIGKVIGKRGRTASAIRTIINAVSTKQGKRAELEIIE
>NC_020449.1|WP_015425174.1|1698900_1699431_-|hypothetical-protein
MKHPPLIGIGKLGRQNADGFHPVMIKPEYRSVFSELEDLYLIFNSDRVFYVTISERMRKDNKTWIKLKEDGVSEEQFLHKDVVIAIDETAIETEETSLNYLIGYQVIFAGEELGIVEDFFFNGAQDVLQIVDSKGTEYLVPFVDYYIDTVIDNLRCVILQNALDLVALYKVEAKKK
>NC_020449.1|WP_015425173.1|1698232_1698904_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MIFEVLSLFPDAFSGFLNSSIIARAREKKLLAVNLTDYRQFSLNKHHKVDDYPYGGFAGMVIQAQPIYSALIELLEKGNAPVVYFTPQGRPLTQKILESYSSYKRIILLCGHYKEIDQRVRDLCVSDEISLGDYVLTGGEIPALAFIDGVSRLLPGVLSDRESANSDSFSNEGLGFPCYTRPEIFMGLGIPEVLLSGNHKEIKKWALEQGKRLTVTRRPDLKK
>NC_020449.1|WP_015425184.1|1708087_1708822_+|hypothetical-protein
MTVYNELYYLKTVKEREDRMKISAIFYAIVILAFFMPFFLVSCDKTEVASLSGVKLVIGGEVKLSIAEEIEKIEDVGKKYQNPVVSIQPFALIALFIAVLALVLVLVLPIQFYLLPAYISIIGVLSLQLLNVGILQIITAYQPLFDPSIDLNSILVIKAQPAFWLANLAFILGGIFTLIAGVKNSSISAPAQKPEEVQEEFITSEIQEWVEEYPLEETFSDSDEENLPAEEENPVHKEEKNTPE
>NC_020449.1|WP_015425185.1|1708833_1709892_+|AI-2E-family-transporter
MDSAKELRWIRILLLIIALAVVAYILKTLKSIFIPLIFSIFLLFLFAPLINYLKKHKFPMVLILLITLVIIAVFLGLVILLIYAASNSLINGLPRYEDKFNALIAKGTEYLQNLATNWNINTENISIANIAQILSSGIISIPQFLSNTVNTLVSIIQNIFLIIFFLIFLLLEIDKLPLRLRKATSKLSKEQTLDILQNIEKQIQNYLTIRTLVNLSAALLCMLWMLIFGVDFILVCGILLFVLDFIPDVGSVISSAIPILIYLMQSGFSFLWLIFALLIVATQMLIGNIIEPKLQGVQLNLTPIMVLVSLIFWGWLWGIVGMLICVPLTSAINIILKQVAPNNFISTLISSE
>NC_020449.1|WP_044279042.1|1710179_1710917_-|DUF1295-domain-containing-protein
MPIQEEFEKSGAWIFKWRSYLPLLMFILGIGAILDLKNSQFIKYDTIIEVICFSISGCGIAIRVLTIGHTPSGTSGRNTKSQVADKLNTTGMYSLLRHPLYFGNFFIILGVVLFTRHIWVIITYPLIFTLYYERVIFAEEAFLRKKYGEEFVSWASKTPVYFPKFSHYKKPEFPFSWKKVIRNEYQTFFALICSLFAMEIISDLIIRQRFVFDPAWKIIFITSCFFYLIIRFINKKTNLLHTSGR
>NC_020449.1|WP_044279043.1|1711151_1712366_-|MFS-transporter
MSEINNKRERKNIFRKLIHFFALNSSMLGMLIMVILVGMGEKMAERFLPLYLIAMGGSSIVIGLLNGMDNLLSALYSFPGGWLADRIGYKKALKIFNLMAMLGYLIVVIFPSWIAVLVGAVFFISWTAISLPATMSLINSVVPANRRSMGISLNSIVKRIPMSLGPILGGALILHYGRIQGVRYAFIVAFILAGVALFIQDKFIQEQSPEAKTERKKGRGLFSANLRNLLVSDILVRFCEQIPYAFVVVWVVENNHINELQFGILTTIEMVTAMLIYIPVAYLADRSTRKPYVAITFVNFTIFPLVLLFSHSFPAMVIAFIIRGLKEFGEPTRKALIMDLAPEDAKAYTFGVYYLIRDVIVAFAAFGGAFLWQKSPQLNFLTASAFGLLGTLYFIFRVKPQKQF
>NC_020449.1|WP_044279044.1|1712700_1713891_+|electron-transfer-flavoprotein-subunit-alpha
MIEVLIEKCVGCGACLRACAYDAIKIEEKLAIIDSDKCVLCGACVSACPFDAILLRKAKTEAIDKSEYNGIWVFAEQREGVIAPVVFELLGKGRELADELGSELSAVLLGHNIEGLSSELIAFGADQVIEIDDPALKHFWDEGYAYALAELALKYKPSIILAGATVIGRSFIPRVAIRLHTGLTADCTGLSIDPETGDLLQTRPAFGGNIMATIKTANHRPQMATVRHKVMNPIPRDDTRSGIVIQEQINFDLDEERTTWLGFEKEKTGLINITEANIIVSGGRGLKEAKNFALIEELAEALGGAVGASRAAVDAEWIAYSHQVGQTGKTVKPLIYIAVGISGAIQHLAGMSSSDYIIAINKDPDAPIFKVADLGIVGDLFEIVPKLTKRIKEQRV
>NC_020449.1|WP_015425191.1|1713887_1715099_+|amidohydrolase-family-protein
MIIKPAISVISPDRMEQGIDLYLWGSPFEEIDLRKDCSNTIAYIPLINSHDHLISNWVPRAGNNRPYKNSHIWVEDMKESFAFQERDIFWHNNGSFRLEEPNSLILAKLGAYKSLFCGCSVVQDHSSNQVDAYYEAMPIVVPKNFRQCHSLTLGNWWGGETPEKEMELTKGKMPFIVHLGEGKDEITKGEFSQLKKMGLLRANTLIIHGIALTAEEISEVANVGASLCWCPSSNFFLIGETLKIDEVLKHKANICIGTDSTMSGGVNLIAEFLKIREHFPKIPTKEIYRMATVNAATALYLPQYFAFIIPNKCRNLLLVDKVERDPYENLFALEASTIQLLLVEGIPRFGDSEWMEILNLDENMYSTFRTGNKEKFVIGDPMELNDQIDEVLGYHKDFPYLPF
>NC_020449.1|WP_015425192.1|1715219_1715849_+|radical-SAM-protein
MEKHLNVTEIFYSLQGESAYSGYPCIFIRLSECNLRCVYCDTQYAFGKGKSMAISSIMEEVKKYPCSLTEITGGEPLLQEDVDALFEELHKSSYKILLETNGAISLEKVPDYVIKIVDVKTPGSGMVDAFLKDNLDYLNDKDELKFVLTDKNDYQFALSFLAQYKPKVNIIHFSPLTEVLEPKELAKWMLKDGIKAKLTLQLHKIIGIE
>NC_020449.1|WP_015425194.1|1716181_1716394_-|sulfur-carrier-protein-ThiS
MADKPVFFVNGNKLPWKEGLVVADALKMMNYTFKMLVIKMNGELIKRENWQTTPIPENADIKVIHLISGG
>NC_020449.1|WP_015425195.1|1716397_1717015_-|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF
MISREEYFSKRDPSAFPLWQKATVGIAGAGGLGSNIAFSLARAGIGTLIIADYDIVTLENLNRQQYTIAQIGKLKVEALAENIQSFNPFINLVLHPVKITPANFNAIFGTADLLLEALDEAEQKEMLISCWTSNYPNKHLIVASGLAGYGKNESIHTEHYGFLHLVGDMKSELNAEISPVATRVAVVANMQANLALELLAETKGM
>NC_020449.1|WP_044279045.1|1717011_1717761_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobB
MRALGIIGYHQTGKTTLATCLIRELTKKGYNVCSIKDIHSETYRSDTEGKNTFLHTQAGSKAVFAKGLYDSALLFPRPLNLKEMVSYLQADYLIIEGLQNAPVPKIVCAENTDQLEELIDDTSIGISGVISSKMKSFKGLPVFSLPDDLSVLISTIEEKCFDILPLAEPECCSACGKDCYTMAEDIIQGRAERSDCVLAEQAELKLWVGDREIVIVPFVQKLLQDIVIAFVNNLKDIDPKGNIKLELKR

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Crispr_ID: NC_020449_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_27

1790402-1790494

Orphan

Consensus_repeat	Method
GGGAATGCAACCGTTATGAATACCTATAT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NC_020449_27

>merge|NC_020449|27|1790402-1790494|CRISPRCasFinder
GGGAATGCAACCGTTATGAATACCTATATTAAAAAAAAATGGTTGCCATCTCGACAGTATATCGGGATATGCAACCGTTATGAATACCTATAT

>NC_020449|27|24|1790402-1790494|CRISPRCasFinder
GGGAATGCAACCGTTATGAATACCTATAT	TAAAAAAAAATGGTTGCCATCTCGACAGTATATCG
GGATATGCAACCGTTATGAATACCTATAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044279060.1\|1794678_1795401_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279059.1\|1793527_1793971_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279062.1\|1812496_1813543_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NC_020449.1\|WP_052293591.1\|1782073_1782994_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_020449.1\|WP_015425254.1\|1791719_1792748_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425262.1\|1807022_1808051_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_020449.1\|WP_015425242.1\|1773994_1775071_+\|DNA-replication-and-repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NC_020449.1\|WP_015425245.1\|1777559_1779341_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_020449.1\|WP_015425248.1\|1781297_1782077_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_020449.1\|WP_015425263.1\|1808070_1809063_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_020449.1\|WP_015425244.1\|1776477_1777536_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270308
NC_020449.1\|WP_015425265.1\|1811142_1812486_+\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|240533
NC_020449.1\|WP_015425264.1\|1809072_1810221_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133061
NC_020449.1\|WP_044279058.1\|1785909_1790193_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226132
NC_020449.1\|WP_015425261.1\|1805476_1806199_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|237297
NC_020449.1\|WP_015425250.1\|1783011_1785894_-\|DEAD/DEAH-box-helicase-family-protein	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236148
NC_020449.1\|WP_015425243.1\|1775067_1776300_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341035
NC_020449.1\|WP_044279061.1\|1801570_1804600_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|372761
NC_020449.1\|WP_015425247.1\|1779906_1781175_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|273704
NC_020449.1\|WP_044279056.1\|1779307_1779910_+\|phosphoribosylglycinamide-formyltransferase-(GART)-(GAR-transformylase)-(5'-phosphoribosylglycinamide-transformylase)	unknown	unknown	gnl\|CDD\|187714

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044279062.1\|1812496_1813543_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	3.66227e-39
NC_020449.1\|WP_052293591.1\|1782073_1782994_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.12086e-146
NC_020449.1\|WP_015425262.1\|1807022_1808051_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	5.15276e-77
NC_020449.1\|WP_015425242.1\|1773994_1775071_+\|DNA-replication-and-repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	2.18181e-77
NC_020449.1\|WP_015425245.1\|1777559_1779341_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_020449.1\|WP_015425248.1\|1781297_1782077_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.46754e-64
NC_020449.1\|WP_015425263.1\|1808070_1809063_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.438e-43
NC_020449.1\|WP_015425244.1\|1776477_1777536_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.26438e-131
NC_020449.1\|WP_015425265.1\|1811142_1812486_+\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.33345e-32
NC_020449.1\|WP_015425264.1\|1809072_1810221_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133061	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.	4.94308e-107
NC_020449.1\|WP_044279058.1\|1785909_1790193_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226132	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].	5.12178e-135
NC_020449.1\|WP_015425261.1\|1805476_1806199_-\|peroxiredoxin	gnl\|CDD\|237297	PRK13189, PRK13189, peroxiredoxin; Provisional.	7.74895e-133
NC_020449.1\|WP_015425250.1\|1783011_1785894_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|236148	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.	0
NC_020449.1\|WP_015425243.1\|1775067_1776300_+\|MFS-transporter	gnl\|CDD\|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.92708e-143
NC_020449.1\|WP_044279061.1\|1801570_1804600_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|372761	pfam13860, FlgD_ig, FlgD Ig-like domain. This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.	4.74168e-09
NC_020449.1\|WP_015425247.1\|1779906_1781175_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|273704	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification].	4.553e-123
NC_020449.1\|WP_044279056.1\|1779307_1779910_+\|phosphoribosylglycinamide-formyltransferase-(GART)-(GAR-transformylase)-(5'-phosphoribosylglycinamide-transformylase)	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	3.13578e-63

>NC_020449.1|WP_044279058.1|1785909_1790193_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MAENITQQLDAYITNKIALSKAMGYLSDSAKSHLIEIVGKSGSGKSHFVQPLMESVEDIYAKRIYFSPHPLMLNHFSELMQVITEVTEEDLYGYYREFRENIGSVNKYDFFFYITERLNEMELFQPFLLVIDDCDIYDNYTRDYLQYLVQYLPDTGIQIVVFTQTRLFPFAELDNIPTLGVEECQWLLQLTFPETDFTGSSESEIFQKITSGNLMIIEKVLKEMKSQKPKGKFNLGPYLEKTFDAEQIYYETLETLSSSQKEILTAMYVLDGFDASALAKALGNPKNIKTDLVTLYNLNLISKPEKGLSIQKKKAFSEWLNNNLKEFKGTLLNQLMEYLQKEKKHPQILVSLQMLNKKYNSALFGKVTSELYQINDSASVLRLEEYVLAHTKSPADKLASTQRIAEAYSALNQKDKAIDHFRQALHISTENNIPAEQIVYKLASDLYAVNSSAFALEIIKQYSPATIDPYWKVKILLLKADIQTESEAFNEAFNTLDIASHSSNSITNQQQRHSVQAEAKKIRGKIHYYINEWEQAEEVFNEAETLYSLAKDHSGLAAIYNNLGVLYMCQGFWEKSETYFLKSLALEKQYFNLNGISVCYNNLGGLMDDKGDPAKSLYYLEEALKIQKLLAEPYNITNIYNNIGVTLMDHGDYDRAEDALKKSLDMANEFGFQRNTIATLNNLGGLYFKKGDWAESISYYEKAIKLSQESGFNEGLLRSFNNLGEVYEKQDELNLAYDLYIKGLELLPAVSDDYIKAELYGNLGSVFTKLHKFKDAYRYLVESLDFFKNIAARDKIIEGYLKQAYYFILTRNIESADYYLAEAQKLAIEQNLPFEIGRSLYLRALLERKNLESAKNYLNEAIKHFVEAGSNYELSLANYELAGVLLDMEEWEQAMEILKNNRKIIERYGSIKLLEQNDILMQKISREYSSQMEEVKFEENLLNQFYEITQNLNTITDLDVLIEQSLSSLVEIANADGGMLLLHPNPSLPDAWEYRIYHNFSPEDKYHDQFQNICYEVYQNNKLENIKQPHFAPSYNNILALPLSIRKNTMGVVLLFCKSGSKYFSERIINLLSALSNQIIVIIENILSANLEKSHNIIREQLSSNNIYSNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKAFVAQYCGALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLENEIERAVTLAEPNTFIKPSDFSEEVYRHIEYSKTIAMLSGKKNLKDAIEELERKLISQSLEKFQWNQTQAAKELGLSRQGLIKKMQRYNLYREED
>NC_020449.1|WP_015425250.1|1783011_1785894_-|DEAD/DEAH-box-helicase-family-protein
MESINNEVKNTENFNNLPLEQLEFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVVNQFVSLVKPKGKVPKFIEHLTHISPQELKTAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNGGFPISNMHWDTAEIGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNALTNYILNHYGYMLNARLMDLAMQANLKSGLYEYIKWIVRQQRSSALSGKKTVPVVNELNNVIEHIAAGSIKSIPEVFAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQDFLVVEAGTGVGKSFAYLVPAIDFSNRNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYICERRWQELLQEQTRGITSYDAYGLLNLLVWKEHTNTGDVSENSSFDKNRFGVLWHKICSDRYLCGGRKCPLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLGEYQYLVIDEAHNLMSAASKNLGFTLSYVDLNSLFNQLVYTSRKYSGGFLSQIIQTLQKSMLTTDQKTHIETLCTKLTGEIDSQRQVITKLFSLAEDHCVEAKSYNKLRIKDINAFEDIYTLLKELSLAFKDIMKDLTALDNVFSTLNSNQVKDLDVLKDNLKGYLSRYMETEEIILQLLNPDLDNYALWIENDPNSERNVPISTFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFLNQSGLSLVTEKNVRQSIVESPFDYDKQSLLLIGSFLPEYKDKFFQSQALGCLEQILTTTNVGTMALFTSYKDLDAVYDHLSDTLFHLNRPFFAQGKGVSRNSLLDEFKKSKNAVLLGTSSFWEGVDIQGDSLSLLILYKIPFQVPSEPLVEALIDKLERENKDSFMHLMLPNALLRLRQGFGRLIRSKTDRGVVLIMDSRVSKKKYGIYFKQILPGRCIELKDEQHLISEIGKFFNPLPANI
>NC_020449.1|WP_052293591.1|1782073_1782994_-|UDP-N-acetylmuramate-dehydrogenase
MLRKEYPQLIDEGIVHIEVPLKEHCSFNIGGPAEVFCTPYTQKQLVTLLKFCLGHNIPYFILGKGSNLLISDKGVKGIVISTERFDKITLGKHYLSAFCGVTLKDLGNFACENGLSGLEFASGIPGSVGGAVFMNAGAYGNEIKDVLYSSRAILPTQEKLSSPNPVFYLKASEHNFSYRHSVFQDLGLIHLSSLFILKKDKPENIRQRMQELQQKRQDKQPMDLPSAGSVFKRPEGFFTGKLIEECGLKGFRIGDAAISEKHCGFIVNLGSATAKDVFQLIQHIQKVVYERYGVHLQTEIRILGEI
>NC_020449.1|WP_015425248.1|1781297_1782077_-|ABC-transporter-permease
MKSRQIILPLLFFVVLVLLWQFISTKGVIAFWVVPSPQQVIQVFINYPGLIWHHLKPTLIEAISGLLISIVLGSITAIAMNLSRLIKQIIYPYLIISQTVPIIAVAPLLIIWFGYGISAKIFAVVLMCFFPIALGLYDGFRSVSIDQIRLLTSMGATPYKIFRLLKIPSALPNFFTGLKLSATYSVMGAVIGEWLGGTSGLGIYMTRATNVHQTAHIFAVIIVFVAVSLALFGIVALLDRILLKWKYHPIDEYLEPEKK
>NC_020449.1|WP_015425247.1|1779906_1781175_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MIRIAIATLGCKANQAESSIILDQFNDFKLVPWQEEADIYIINTCTVTNRTDYKSRYLIRQALSQKTQNPFAKIVVTGCFAQRYPEEIAKMGNVDWIIDNQQKLNIADILAGGNYEFMDIMQAKEFVYKPTAKMYNRTRAFQIIQDGCDFNCAYCAVPYGRGRSRSATLEQVIQQAKLFVENGYKEIVLSGINLGLYKDGNNDLTDVLLRLNELQGLELIRLSSVEPQLFNDKLINTLPLIPKLCSHYHIPLQCGADSGLKRMRRHYTSTTINQLIVKICERIPYPAIGMDVITGFPGETEEEHNQTCEFLRSLPLAYLHIFTFSKRKGTPAFDFPNQISKTIKNRRANELSQISRELTSAYTKSLMENNIPLRGIVEKNTAGYCEFLSDHYVRVRFSGNFQPGDFVQVPSQEAQIKMKNEE
>NC_020449.1|WP_044279056.1|1779307_1779910_+|phosphoribosylglycinamide-formyltransferase-(GART)-(GAR-transformylase)-(5'-phosphoribosylglycinamide-transformylase)
MERPASATHKIAVFCSGLSRGSNLCALHNYFTQNKLPIEVALVIFTRKDAPAVQLAEEKGLNYHIISTRNMQLFEQQAINLCQQHNIELIALAGFLKQLSENFIADVQVPILNIHPALLPQYGGKGMYGMAVHKAVFASCDKFSGVTIHLVNSQYDKGKIVAQQKVDISSCKSPEEIAEKVLEIEHKLYAPAICQFLLKS
>NC_020449.1|WP_015425245.1|1777559_1779341_+|aspartate--tRNA-ligase
MLDNLGNLTRTHYCGNLNTEHIGQEVTVMGWVNKRRDLGGLIFIDLRDVKGILQVVIRPEKPEIFAKAEKVRNEYVIAVRGKICARTEPNINPNLPTGKIELEAEEFYILNDAQPLPVQFSEVAMAEEDLRLTYRYLDLRRPKLQKIIITRHRIMQIIREFLNNEGFYEIETPILMKSTPEGARDYLVPSRMQPGKFYALPQSPQMFKQLLMIAGLDRYYQIARCFRDEDLRADRQPEFTQLDIELSFVSQAQIFDLIERLFAKLFQEVLGYNLSVPFPVIPYAEAMENYGCDKPDIRFEMKLFDISNIVKNSGFNVFSAALKNGGVVKAIAIPKAADFSRKQQDELVELAKHLGGKGIAFAKVTENGLEGGISKFLSPEEAEAIIQATQAQKNDLLAFAADNYEMVSKVLAGIRNFLAPQLNLIPENSFAFCWITDFPLFTKNLETGKWEPAHHMFTLPKEEHIPYLDIPEKIGEIIGQLYDLVCNGVELSSGSIRCHRYDIQKKIFDILGFSEEELQKRFGFFLEALKYGTPPHGGIAPGLDRLVMIMTGAESIRDVIAFPKTLKATDLMSQAPSEVDEQQWKDLHLQPIK
>NC_020449.1|WP_015425244.1|1776477_1777536_+|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MKRGNIIVLIMVIVLLFFCGSCSKNKPVLYIFNWSDYIDPDLIKEFEQQNKCTIKYSTYDSNENMLTKIMSSREAFDLVFPSGDHVTIMCDAGLLEPLDLTKIPNYRNLDNNLLLKATSFDPGNKYSLPYFWGLTGIIYNQRYVPESVVKSQSWNILADNFFTGKNKVTMLDDAREVVGAALIYNGYDLNDTSAEALAAAEKTLAEWDKNITQFDSDSYKNEVPDGTTWLAQAYNGDALQVMENNPDIKFFLPVEGTSLWMDNIVMLKSSKNKELAYKFIDFLLNAEIGKRNTEYCRYATPNKAANNLLPDTIKNNALIYPSEEYLQKCYMINALGENVKKIDKLFEAIKLN
>NC_020449.1|WP_015425243.1|1775067_1776300_+|MFS-transporter
MKFNRNIIGWMLYDFANSAFTTIIVTVVYSVYFINNVVGGPAGYGEMLWGRAIGISMTLVAISAPIFGAVADYSRAKKRMLFINCYITVIFTALLYFVKPGDVFIGMLFFIIANFGFNSANVFYDAFLPEICQPEDIGKVSGFGWSLGYVGGLVSLLVALVLVKINVRLVFPAVALHLFLFSLFTFFWLKEFRRPSQRSNYYRIAWQRVTYSLKNIAKLPQLLKYIISYFIYNDGITTVIVFASIYGAERFGMTTPQMITYFILAQFTSILGAAFFGWLTDKWNVKNSLSISLIIWIGVVIWAFFCSSASEYYFVGLVAGLAIGSSQANSRTMLSLLTPRDRQAEFFGFYTLTGRLSSIIGPILYGWIAHQTGDIRYSVLSLIFFFVIGWILLQSVQLQEGIEQAKVNEE
>NC_020449.1|WP_015425242.1|1773994_1775071_+|DNA-replication-and-repair-protein-RecF
MNLAKIELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEELLNFGGQFFRVQSLFISDQQTPKKVSLSYADQHKLLKIDELPIRQLSSLFEVVKVIYCAPEDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAEITSWNLSFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYIPSLKLPLESSPEEIIKHLATIEEREKLLQRSLVGAHLDDYEFKLKGRKMLTYASQGQKRIAVIILKLIQARLIEKVTGIKPIMLFDDIFAELDTFHSQQIRNCINNRYQVFIASPKEDLCNIWQGYQIQKLEGMDK
>NC_020449.1|WP_015425254.1|1791719_1792748_+|hypothetical-protein
MKGERLNKAKYYFIKKEVYLILFGYIIMIIIELLMLIGIFLVLRKKFLDIQFNSYLIFLYAFFLWAILNIIIHLFPRKKYSLDIIIRHTQVYLTIIIISLGLISGFSYLISKRPFVPIPDLQGGTFGFSTWNCKASIEDIEINFQYPDSNKIIHLSENQLYDKNLWVSAWNQFTREDSTVIIEKNPNGKTPKIIVDYGGVYFNLPKAGYKANIKNASMTGIIKFYKAEKNLLAYPNFEFSFRVPWDSTGNEPSSKLYIGLQTFFFNPEWSKCYIPLLSLAPSVQHHDSKQLIKKNTRFTKYKFNQPYRLHAVVFDNNAELYIENIQFGAAGTLYEGKFTSKE
>NC_020449.1|WP_044279059.1|1793527_1793971_-|hypothetical-protein
MKVTVKEGIKGFSGKLDGAIYYYHPRLKRTLMRRAPQMPIQEKNLEYAAIAKQIKAINPSDAYRSDFKNYLNLLRDRDDSVRVPSWYSLFVKMLWAMQAKYPEQVNLKTITKTQILEQQLPCRSVKNAVEDDLLPKVPGYQYLDNEI
>NC_020449.1|WP_044279060.1|1794678_1795401_-|hypothetical-protein
MRIDPKKLEKYLRYFFMLLTCLVIGYNLYLRQWETLWSAVMTLLLFMLPTVLEKRIAITIPTSMQIIILLFIFASMYLGEIHRYFYRYRWWDRMLHTASAVILSYSGFILIYSMNKDYKVDMKLSPKFMALFSFCFAIMVCALWEILEYTIDAIFGVDMQKARNLEKVYGFFDTRLGVKDTMKDLIIDAIGAYVVSLIGYFHLKRRKDEDSAFWSLHKQFMKDNPELFGMAEEENKIDMK
>NC_020449.1|WP_044279061.1|1801570_1804600_-|T9SS-type-A-sorting-domain-containing-protein
MKRPLFFILLILAFMGLNANERIPIYSSQFLEYYGNGLTLPNGDILFFTNASDEYGNNIVMNKITVIGENVSSESIDITNAPGDEYIINQILSSDGCVIFTYNFLAEDVDYYYDDEMYIQKVTLSGQTLWGEMGKKITRDFTDYTLVPNNLGGAYLLNDGNSYDEAKLYGWNFNAQGNNLWQSDIILEMPCFQLFLNNILADGAGNIILNLMLKDSPESYCYSHLIKLSPEGNIIGNNPLLPQSQFSGLYQIYSDRNGNYVLWKVIDSNLTLQKMDSSYNLLLPQAITYQHSSDSEISNLGFCADGSLYYSAERNYPLNPLIYKLNPDLQPSWTTPAEIPFYFNYYYRTFRIANDNSLYSAYIDYLGSNGNFPNSSIMLTRINSADGSIAFPFTCVSSQIFPKGAARIFNSSDKALVLWYDISDINFEVRCQLVAPSGSILLEQEGRTLQYRHTGSVNNYQVVNLPQGACYVYEIMDTCFNLKLYYQICDDNLSPLLGEYGIELNPDSSEAEWLKKIILTPQNQIGILYLTQNAQDVFSLYYQVIDNTGTVLLPGRGILIKEAVTNPNYNYQMTCVDDDIIIAWEEIYSLLNTTIIRGQRLHNNLPQWDAGGKILKQSTPYECSLVNICENYLVYDDHSYTNYSYGIRKLDTDGNPDPSWLLTDYITSGTHSFLIQSCSLMGDEMAVFYIKEFIAGLYARYDLYVQKYNSQGLPLWGTLGIHLDTTENIPISVAGVNYGDKIFFALQKYDPYLYINYMSYNLITNNGTIIWDNPESFSTEIFYETNDFKLIPYNNDVYSILWLSVRSDNLSKINHHYVLSDGFLYYNQAEIIDKSVKSISDLQVLNKGNYCLANYRLNKYYIEYKSAAGGLQSSASNESRGHRSSASDPKGFSYEVKSLFAYKIPSEPVFTDDPLQPPATLSCCNYPNPFNPETTISFEIPKTDNVSLQIYNLKGQLIRTLVNDYLPAGKQSIVWNGTDNNNQPVASGVYLYKIKTGKFTKSAKMLLLK
>NC_020449.1|WP_015425261.1|1805476_1806199_-|peroxiredoxin
MDTREGMPLLGDYFPEMTVVTTKGKMTLPNDMAGKWFVFFSHPADFTPVCTTEFVSFQKLYPKFKELNTELIGLSVDQVFAHIKWEEWIKENLGVTIQFPIIADTGAVAKRLGLIHPGKGTNTVRAVFIVDAKGIIRIILYYPQELGRNMEEILRAVKGMQFSDANGFSMPANWPKNELIGDKVIIPAAATVADANTRIAKIKKGEIEGYDWWFSYRDAKPKQEKKTVTQPKSSSRTKKK
>NC_020449.1|WP_015425262.1|1807022_1808051_-|Gfo/Idh/MocA-family-oxidoreductase
MKTVKIGLIGCGRISKNHLDAVSQIPEAEFVAVCDLVEEKMQAVAENYGIKNLYNNYQDMLENEKLDLVSICTPSGLHPQMGIDVAKHKINVLTEKPMATNIESADALIRACDQNKVKLFVVKQNRLNATMQLLKRAIDKGRFGRIYLAESNVFWQRPQSYYDNEKWRGTWEFDGGAFMNQASHYVDALYWLLGNVDSVMAYTATMARRIEAEDTGCAILHFRNGIIATINVTMLTYPKNFEGSITIIGEKGTVKIGGVAVNKIEKWEFEDYDDDDRIAQDANYQPPNVYGFGHNPYYRNVIDVLLGKDVPSTDGRDGRKSVEIIQAIYRSAKTGKRVSLPL
>NC_020449.1|WP_015425263.1|1808070_1809063_-|NAD(P)-dependent-oxidoreductase
MNILITGSNGFVGSNLMWELEEDGHTVIGIDISEHCEGKKHPQTLKGDIRSLKDLNRVASVFLQKQQCPLELIIHCAAAKNDFGVSRQEYYSHNKYGTKTLLNFACEQGIKKLIYISSVGVFGHPEGKANEDFPYNPDTDYGASKLAGELLCIKWQQQYPEHELIVLRPAAIFGPDNFTNTYKLIDTLHRRPYLTIGEGNHIKTIVSIHTVIDMIRFAMQKLAPGYEHYNCIDEPYLTLKELMELICSHPGFQMPRFKIPLKAAIGIGRLFDIPAKLFSIDLPVNSERMRKLGTATYFTAEKAKKDGFVQKMSLKDSITEMCDWYLSINK
>NC_020449.1|WP_015425264.1|1809072_1810221_-|glycosyltransferase-family-2-protein
MVIAKIVFWISWLLLAYHFVGYGLFLFIITSLFKKAKISIPAPDVYPSITVICSAYNEEKVIEEKIRSFLQLNYPKDRIKMIIISDDSTDRTNEIVQKYTDQNISLVIQKPRAGKQNAHNLVLPLLDTDYVLSTDANSIFTPDCVQLLVAKMLSDKRIGLVSGEVKMVKRGSKQSGEAHYWKYEAFLKLMDSRLKTLIGANGPIYLIKRELFSEIPSNSPDDFERVLLTLKRRFIAAYEPQAIIYEEVTEKATEEISRKVRIITQEWCVLKRNIELLNPFRYPAVSFILFSHKVLRWLFFVFVLTGFVSNAFLLQFGFYRIVFILQVIFYLLGTIGLISQEKGHHIPLTGIPGYFVAMVYSSALAFWNFLQNKKINLWQPVR
>NC_020449.1|WP_015425265.1|1811142_1812486_+|polysaccharide-biosynthesis-C-terminal-domain-containing-protein
MSQINLKKNIVTSGSFRIVILILSFLISWISARYLGLTLKGEYSYLITLGGFIWMILDWGIFRSYPYLVRKYTDEVKTMFGWTILTMFLELLIFSCLGIVFLDFWSKLIGYPLTPAKMILLIMFISFNKAFMQLQAIYMGMDRILENSLAHFLSSAIFFVLLLIGYFALLEVDRINAVLVFTVAGLFGSVIYLVLRTKWTNWYKQLNFKLVKLFYSYGFRVFLSSLFIMLLIRADIVIIKHFLDFKEVGIYSMAAHIVDFIQIASNLVGGLLFVKLSDIDDDISKWLLLKKTLLLFFFFITLANLGFGLLGKFIMRIMFGIQFVPVYYVYFWLMPAVYGLSFGSLFNNYLNSKGFPIISIILPAVALVINIGLNLWLIPVMGINGAALSTSFSYFLWFILIVYFEQKDSQGKMLKYLLPTRKDIIDLCQETMADLKGLGEKFLHKTA
>NC_020449.1|WP_044279062.1|1812496_1813543_+|glycosyltransferase-family-9-protein
MKKVTQGKVLLIHTWGIGDLILLTPVLQAVKTLYPLLELEILFFPKSAAIPVTDAPFISKIHFTGWKANLLLPTLFQLRKEKYQAVLFSSGVRPWKTWLFMLLLKAEIKVGEYKKFRYPGLSVYVKFNPLLSRTRSNYTLFQSFLNLPSWEEAIARQNELNLYPYFHLTEANHQWAENFLAENNLTGKKVIGIHPGSMAKNKRRRWNKEYFIALIEKLKRQYDYPILIIAGPDEIEVGKAIQARTKTLLLQNALLENVAAVISRLHFFINTDSGLGHIASCFGIKGLTIFGPANELQTAPFSNNSNIIRYPVDCAPCIDKKKKPKCTLDCLLKLTPDMVFKRVQELLD

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Crispr_ID: NC_020449_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_28

1804939-1805060

Orphan

Consensus_repeat	Method
GGAACTCTTTCTTAACAAAAGAGATAAGTTGTTT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NC_020449_28

>merge|NC_020449|28|1804939-1805060|CRISPRCasFinder
GGAACTCTTTCTTAACAAAAGAGATAAGTTGTTTTATATTTCTCTTTGCACCGGGTTAAAACCCGTTGTTAGTATCTGTCGTTCCTATGGAACTCTTTCTTAATAAAAGAGATAAGTTGTTT

>NC_020449|28|25|1804939-1805060|CRISPRCasFinder
GGAACTCTTTCTTAACAAAAGAGATAAGTTGTTT	TATATTTCTCTTTGCACCGGGTTAAAACCCGTTGTTAGTATCTGTCGTTCCTAT
GGAACTCTTTCTTAATAAAAGAGATAAGTTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044279063.1\|1817879_1818680_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_020449.1\|WP_044279060.1\|1794678_1795401_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279059.1\|1793527_1793971_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425268.1\|1814800_1815973_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340828
NC_020449.1\|WP_052293591.1\|1782073_1782994_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_020449.1\|WP_015425262.1\|1807022_1808051_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_020449.1\|WP_015425254.1\|1791719_1792748_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425267.1\|1813539_1814814_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340825
NC_020449.1\|WP_015425248.1\|1781297_1782077_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_020449.1\|WP_015425263.1\|1808070_1809063_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_020449.1\|WP_044279062.1\|1812496_1813543_+\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|223928
NC_020449.1\|WP_015425265.1\|1811142_1812486_+\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|240533
NC_020449.1\|WP_015425269.1\|1816134_1817874_-\|chitobiase/beta-hexosaminidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379107
NC_020449.1\|WP_015425264.1\|1809072_1810221_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133061
NC_020449.1\|WP_044279058.1\|1785909_1790193_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226132
NC_020449.1\|WP_015425261.1\|1805476_1806199_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|237297
NC_020449.1\|WP_015425250.1\|1783011_1785894_-\|DEAD/DEAH-box-helicase-family-protein	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236148
NC_020449.1\|WP_044279056.1\|1779307_1779910_+\|phosphoribosylglycinamide-formyltransferase-(GART)-(GAR-transformylase)-(5'-phosphoribosylglycinamide-transformylase)	unknown	unknown	gnl\|CDD\|187714
NC_020449.1\|WP_044279061.1\|1801570_1804600_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|372761
NC_020449.1\|WP_015425247.1\|1779906_1781175_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|273704

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044279063.1\|1817879_1818680_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	4.54769e-40
NC_020449.1\|WP_015425269.1\|1816134_1817874_-\|chitobiase/beta-hexosaminidase-C-terminal-domain-containing-protein	gnl\|CDD\|379107	pfam13290, CHB_HEX_C_1, Chitobiase/beta-hexosaminidase C-terminal domain.	5.26581e-18
NC_020449.1\|WP_015425268.1\|1814800_1815973_-\|glycosyltransferase	gnl\|CDD\|340828	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. Staphylococcus aureus CapJ may be involved in capsule polysaccharide biosynthesis. WlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.	1.01181e-53
NC_020449.1\|WP_052293591.1\|1782073_1782994_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.12086e-146
NC_020449.1\|WP_015425262.1\|1807022_1808051_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	5.15276e-77
NC_020449.1\|WP_015425267.1\|1813539_1814814_-\|hypothetical-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.95462e-27
NC_020449.1\|WP_015425248.1\|1781297_1782077_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.46754e-64
NC_020449.1\|WP_015425263.1\|1808070_1809063_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.438e-43
NC_020449.1\|WP_044279062.1\|1812496_1813543_+\|glycosyltransferase-family-9-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	3.66227e-39
NC_020449.1\|WP_015425265.1\|1811142_1812486_+\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.33345e-32
NC_020449.1\|WP_015425264.1\|1809072_1810221_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133061	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.	4.94308e-107
NC_020449.1\|WP_044279058.1\|1785909_1790193_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226132	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].	5.12178e-135
NC_020449.1\|WP_015425261.1\|1805476_1806199_-\|peroxiredoxin	gnl\|CDD\|237297	PRK13189, PRK13189, peroxiredoxin; Provisional.	7.74895e-133
NC_020449.1\|WP_015425250.1\|1783011_1785894_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|236148	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.	0
NC_020449.1\|WP_044279056.1\|1779307_1779910_+\|phosphoribosylglycinamide-formyltransferase-(GART)-(GAR-transformylase)-(5'-phosphoribosylglycinamide-transformylase)	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	3.13578e-63
NC_020449.1\|WP_044279061.1\|1801570_1804600_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|372761	pfam13860, FlgD_ig, FlgD Ig-like domain. This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.	4.74168e-09
NC_020449.1\|WP_015425247.1\|1779906_1781175_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|273704	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification].	4.553e-123

>NC_020449.1|WP_044279061.1|1801570_1804600_-|T9SS-type-A-sorting-domain-containing-protein
MKRPLFFILLILAFMGLNANERIPIYSSQFLEYYGNGLTLPNGDILFFTNASDEYGNNIVMNKITVIGENVSSESIDITNAPGDEYIINQILSSDGCVIFTYNFLAEDVDYYYDDEMYIQKVTLSGQTLWGEMGKKITRDFTDYTLVPNNLGGAYLLNDGNSYDEAKLYGWNFNAQGNNLWQSDIILEMPCFQLFLNNILADGAGNIILNLMLKDSPESYCYSHLIKLSPEGNIIGNNPLLPQSQFSGLYQIYSDRNGNYVLWKVIDSNLTLQKMDSSYNLLLPQAITYQHSSDSEISNLGFCADGSLYYSAERNYPLNPLIYKLNPDLQPSWTTPAEIPFYFNYYYRTFRIANDNSLYSAYIDYLGSNGNFPNSSIMLTRINSADGSIAFPFTCVSSQIFPKGAARIFNSSDKALVLWYDISDINFEVRCQLVAPSGSILLEQEGRTLQYRHTGSVNNYQVVNLPQGACYVYEIMDTCFNLKLYYQICDDNLSPLLGEYGIELNPDSSEAEWLKKIILTPQNQIGILYLTQNAQDVFSLYYQVIDNTGTVLLPGRGILIKEAVTNPNYNYQMTCVDDDIIIAWEEIYSLLNTTIIRGQRLHNNLPQWDAGGKILKQSTPYECSLVNICENYLVYDDHSYTNYSYGIRKLDTDGNPDPSWLLTDYITSGTHSFLIQSCSLMGDEMAVFYIKEFIAGLYARYDLYVQKYNSQGLPLWGTLGIHLDTTENIPISVAGVNYGDKIFFALQKYDPYLYINYMSYNLITNNGTIIWDNPESFSTEIFYETNDFKLIPYNNDVYSILWLSVRSDNLSKINHHYVLSDGFLYYNQAEIIDKSVKSISDLQVLNKGNYCLANYRLNKYYIEYKSAAGGLQSSASNESRGHRSSASDPKGFSYEVKSLFAYKIPSEPVFTDDPLQPPATLSCCNYPNPFNPETTISFEIPKTDNVSLQIYNLKGQLIRTLVNDYLPAGKQSIVWNGTDNNNQPVASGVYLYKIKTGKFTKSAKMLLLK
>NC_020449.1|WP_044279060.1|1794678_1795401_-|hypothetical-protein
MRIDPKKLEKYLRYFFMLLTCLVIGYNLYLRQWETLWSAVMTLLLFMLPTVLEKRIAITIPTSMQIIILLFIFASMYLGEIHRYFYRYRWWDRMLHTASAVILSYSGFILIYSMNKDYKVDMKLSPKFMALFSFCFAIMVCALWEILEYTIDAIFGVDMQKARNLEKVYGFFDTRLGVKDTMKDLIIDAIGAYVVSLIGYFHLKRRKDEDSAFWSLHKQFMKDNPELFGMAEEENKIDMK
>NC_020449.1|WP_044279059.1|1793527_1793971_-|hypothetical-protein
MKVTVKEGIKGFSGKLDGAIYYYHPRLKRTLMRRAPQMPIQEKNLEYAAIAKQIKAINPSDAYRSDFKNYLNLLRDRDDSVRVPSWYSLFVKMLWAMQAKYPEQVNLKTITKTQILEQQLPCRSVKNAVEDDLLPKVPGYQYLDNEI
>NC_020449.1|WP_015425254.1|1791719_1792748_+|hypothetical-protein
MKGERLNKAKYYFIKKEVYLILFGYIIMIIIELLMLIGIFLVLRKKFLDIQFNSYLIFLYAFFLWAILNIIIHLFPRKKYSLDIIIRHTQVYLTIIIISLGLISGFSYLISKRPFVPIPDLQGGTFGFSTWNCKASIEDIEINFQYPDSNKIIHLSENQLYDKNLWVSAWNQFTREDSTVIIEKNPNGKTPKIIVDYGGVYFNLPKAGYKANIKNASMTGIIKFYKAEKNLLAYPNFEFSFRVPWDSTGNEPSSKLYIGLQTFFFNPEWSKCYIPLLSLAPSVQHHDSKQLIKKNTRFTKYKFNQPYRLHAVVFDNNAELYIENIQFGAAGTLYEGKFTSKE
>NC_020449.1|WP_044279058.1|1785909_1790193_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MAENITQQLDAYITNKIALSKAMGYLSDSAKSHLIEIVGKSGSGKSHFVQPLMESVEDIYAKRIYFSPHPLMLNHFSELMQVITEVTEEDLYGYYREFRENIGSVNKYDFFFYITERLNEMELFQPFLLVIDDCDIYDNYTRDYLQYLVQYLPDTGIQIVVFTQTRLFPFAELDNIPTLGVEECQWLLQLTFPETDFTGSSESEIFQKITSGNLMIIEKVLKEMKSQKPKGKFNLGPYLEKTFDAEQIYYETLETLSSSQKEILTAMYVLDGFDASALAKALGNPKNIKTDLVTLYNLNLISKPEKGLSIQKKKAFSEWLNNNLKEFKGTLLNQLMEYLQKEKKHPQILVSLQMLNKKYNSALFGKVTSELYQINDSASVLRLEEYVLAHTKSPADKLASTQRIAEAYSALNQKDKAIDHFRQALHISTENNIPAEQIVYKLASDLYAVNSSAFALEIIKQYSPATIDPYWKVKILLLKADIQTESEAFNEAFNTLDIASHSSNSITNQQQRHSVQAEAKKIRGKIHYYINEWEQAEEVFNEAETLYSLAKDHSGLAAIYNNLGVLYMCQGFWEKSETYFLKSLALEKQYFNLNGISVCYNNLGGLMDDKGDPAKSLYYLEEALKIQKLLAEPYNITNIYNNIGVTLMDHGDYDRAEDALKKSLDMANEFGFQRNTIATLNNLGGLYFKKGDWAESISYYEKAIKLSQESGFNEGLLRSFNNLGEVYEKQDELNLAYDLYIKGLELLPAVSDDYIKAELYGNLGSVFTKLHKFKDAYRYLVESLDFFKNIAARDKIIEGYLKQAYYFILTRNIESADYYLAEAQKLAIEQNLPFEIGRSLYLRALLERKNLESAKNYLNEAIKHFVEAGSNYELSLANYELAGVLLDMEEWEQAMEILKNNRKIIERYGSIKLLEQNDILMQKISREYSSQMEEVKFEENLLNQFYEITQNLNTITDLDVLIEQSLSSLVEIANADGGMLLLHPNPSLPDAWEYRIYHNFSPEDKYHDQFQNICYEVYQNNKLENIKQPHFAPSYNNILALPLSIRKNTMGVVLLFCKSGSKYFSERIINLLSALSNQIIVIIENILSANLEKSHNIIREQLSSNNIYSNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKAFVAQYCGALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTAEAMKVLEQYDWPGNVRQLENEIERAVTLAEPNTFIKPSDFSEEVYRHIEYSKTIAMLSGKKNLKDAIEELERKLISQSLEKFQWNQTQAAKELGLSRQGLIKKMQRYNLYREED
>NC_020449.1|WP_015425250.1|1783011_1785894_-|DEAD/DEAH-box-helicase-family-protein
MESINNEVKNTENFNNLPLEQLEFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVVNQFVSLVKPKGKVPKFIEHLTHISPQELKTAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNGGFPISNMHWDTAEIGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNALTNYILNHYGYMLNARLMDLAMQANLKSGLYEYIKWIVRQQRSSALSGKKTVPVVNELNNVIEHIAAGSIKSIPEVFAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQDFLVVEAGTGVGKSFAYLVPAIDFSNRNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYICERRWQELLQEQTRGITSYDAYGLLNLLVWKEHTNTGDVSENSSFDKNRFGVLWHKICSDRYLCGGRKCPLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLGEYQYLVIDEAHNLMSAASKNLGFTLSYVDLNSLFNQLVYTSRKYSGGFLSQIIQTLQKSMLTTDQKTHIETLCTKLTGEIDSQRQVITKLFSLAEDHCVEAKSYNKLRIKDINAFEDIYTLLKELSLAFKDIMKDLTALDNVFSTLNSNQVKDLDVLKDNLKGYLSRYMETEEIILQLLNPDLDNYALWIENDPNSERNVPISTFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFLNQSGLSLVTEKNVRQSIVESPFDYDKQSLLLIGSFLPEYKDKFFQSQALGCLEQILTTTNVGTMALFTSYKDLDAVYDHLSDTLFHLNRPFFAQGKGVSRNSLLDEFKKSKNAVLLGTSSFWEGVDIQGDSLSLLILYKIPFQVPSEPLVEALIDKLERENKDSFMHLMLPNALLRLRQGFGRLIRSKTDRGVVLIMDSRVSKKKYGIYFKQILPGRCIELKDEQHLISEIGKFFNPLPANI
>NC_020449.1|WP_052293591.1|1782073_1782994_-|UDP-N-acetylmuramate-dehydrogenase
MLRKEYPQLIDEGIVHIEVPLKEHCSFNIGGPAEVFCTPYTQKQLVTLLKFCLGHNIPYFILGKGSNLLISDKGVKGIVISTERFDKITLGKHYLSAFCGVTLKDLGNFACENGLSGLEFASGIPGSVGGAVFMNAGAYGNEIKDVLYSSRAILPTQEKLSSPNPVFYLKASEHNFSYRHSVFQDLGLIHLSSLFILKKDKPENIRQRMQELQQKRQDKQPMDLPSAGSVFKRPEGFFTGKLIEECGLKGFRIGDAAISEKHCGFIVNLGSATAKDVFQLIQHIQKVVYERYGVHLQTEIRILGEI
>NC_020449.1|WP_015425248.1|1781297_1782077_-|ABC-transporter-permease
MKSRQIILPLLFFVVLVLLWQFISTKGVIAFWVVPSPQQVIQVFINYPGLIWHHLKPTLIEAISGLLISIVLGSITAIAMNLSRLIKQIIYPYLIISQTVPIIAVAPLLIIWFGYGISAKIFAVVLMCFFPIALGLYDGFRSVSIDQIRLLTSMGATPYKIFRLLKIPSALPNFFTGLKLSATYSVMGAVIGEWLGGTSGLGIYMTRATNVHQTAHIFAVIIVFVAVSLALFGIVALLDRILLKWKYHPIDEYLEPEKK
>NC_020449.1|WP_015425247.1|1779906_1781175_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MIRIAIATLGCKANQAESSIILDQFNDFKLVPWQEEADIYIINTCTVTNRTDYKSRYLIRQALSQKTQNPFAKIVVTGCFAQRYPEEIAKMGNVDWIIDNQQKLNIADILAGGNYEFMDIMQAKEFVYKPTAKMYNRTRAFQIIQDGCDFNCAYCAVPYGRGRSRSATLEQVIQQAKLFVENGYKEIVLSGINLGLYKDGNNDLTDVLLRLNELQGLELIRLSSVEPQLFNDKLINTLPLIPKLCSHYHIPLQCGADSGLKRMRRHYTSTTINQLIVKICERIPYPAIGMDVITGFPGETEEEHNQTCEFLRSLPLAYLHIFTFSKRKGTPAFDFPNQISKTIKNRRANELSQISRELTSAYTKSLMENNIPLRGIVEKNTAGYCEFLSDHYVRVRFSGNFQPGDFVQVPSQEAQIKMKNEE
>NC_020449.1|WP_044279056.1|1779307_1779910_+|phosphoribosylglycinamide-formyltransferase-(GART)-(GAR-transformylase)-(5'-phosphoribosylglycinamide-transformylase)
MERPASATHKIAVFCSGLSRGSNLCALHNYFTQNKLPIEVALVIFTRKDAPAVQLAEEKGLNYHIISTRNMQLFEQQAINLCQQHNIELIALAGFLKQLSENFIADVQVPILNIHPALLPQYGGKGMYGMAVHKAVFASCDKFSGVTIHLVNSQYDKGKIVAQQKVDISSCKSPEEIAEKVLEIEHKLYAPAICQFLLKS
>NC_020449.1|WP_015425261.1|1805476_1806199_-|peroxiredoxin
MDTREGMPLLGDYFPEMTVVTTKGKMTLPNDMAGKWFVFFSHPADFTPVCTTEFVSFQKLYPKFKELNTELIGLSVDQVFAHIKWEEWIKENLGVTIQFPIIADTGAVAKRLGLIHPGKGTNTVRAVFIVDAKGIIRIILYYPQELGRNMEEILRAVKGMQFSDANGFSMPANWPKNELIGDKVIIPAAATVADANTRIAKIKKGEIEGYDWWFSYRDAKPKQEKKTVTQPKSSSRTKKK
>NC_020449.1|WP_015425262.1|1807022_1808051_-|Gfo/Idh/MocA-family-oxidoreductase
MKTVKIGLIGCGRISKNHLDAVSQIPEAEFVAVCDLVEEKMQAVAENYGIKNLYNNYQDMLENEKLDLVSICTPSGLHPQMGIDVAKHKINVLTEKPMATNIESADALIRACDQNKVKLFVVKQNRLNATMQLLKRAIDKGRFGRIYLAESNVFWQRPQSYYDNEKWRGTWEFDGGAFMNQASHYVDALYWLLGNVDSVMAYTATMARRIEAEDTGCAILHFRNGIIATINVTMLTYPKNFEGSITIIGEKGTVKIGGVAVNKIEKWEFEDYDDDDRIAQDANYQPPNVYGFGHNPYYRNVIDVLLGKDVPSTDGRDGRKSVEIIQAIYRSAKTGKRVSLPL
>NC_020449.1|WP_015425263.1|1808070_1809063_-|NAD(P)-dependent-oxidoreductase
MNILITGSNGFVGSNLMWELEEDGHTVIGIDISEHCEGKKHPQTLKGDIRSLKDLNRVASVFLQKQQCPLELIIHCAAAKNDFGVSRQEYYSHNKYGTKTLLNFACEQGIKKLIYISSVGVFGHPEGKANEDFPYNPDTDYGASKLAGELLCIKWQQQYPEHELIVLRPAAIFGPDNFTNTYKLIDTLHRRPYLTIGEGNHIKTIVSIHTVIDMIRFAMQKLAPGYEHYNCIDEPYLTLKELMELICSHPGFQMPRFKIPLKAAIGIGRLFDIPAKLFSIDLPVNSERMRKLGTATYFTAEKAKKDGFVQKMSLKDSITEMCDWYLSINK
>NC_020449.1|WP_015425264.1|1809072_1810221_-|glycosyltransferase-family-2-protein
MVIAKIVFWISWLLLAYHFVGYGLFLFIITSLFKKAKISIPAPDVYPSITVICSAYNEEKVIEEKIRSFLQLNYPKDRIKMIIISDDSTDRTNEIVQKYTDQNISLVIQKPRAGKQNAHNLVLPLLDTDYVLSTDANSIFTPDCVQLLVAKMLSDKRIGLVSGEVKMVKRGSKQSGEAHYWKYEAFLKLMDSRLKTLIGANGPIYLIKRELFSEIPSNSPDDFERVLLTLKRRFIAAYEPQAIIYEEVTEKATEEISRKVRIITQEWCVLKRNIELLNPFRYPAVSFILFSHKVLRWLFFVFVLTGFVSNAFLLQFGFYRIVFILQVIFYLLGTIGLISQEKGHHIPLTGIPGYFVAMVYSSALAFWNFLQNKKINLWQPVR
>NC_020449.1|WP_015425265.1|1811142_1812486_+|polysaccharide-biosynthesis-C-terminal-domain-containing-protein
MSQINLKKNIVTSGSFRIVILILSFLISWISARYLGLTLKGEYSYLITLGGFIWMILDWGIFRSYPYLVRKYTDEVKTMFGWTILTMFLELLIFSCLGIVFLDFWSKLIGYPLTPAKMILLIMFISFNKAFMQLQAIYMGMDRILENSLAHFLSSAIFFVLLLIGYFALLEVDRINAVLVFTVAGLFGSVIYLVLRTKWTNWYKQLNFKLVKLFYSYGFRVFLSSLFIMLLIRADIVIIKHFLDFKEVGIYSMAAHIVDFIQIASNLVGGLLFVKLSDIDDDISKWLLLKKTLLLFFFFITLANLGFGLLGKFIMRIMFGIQFVPVYYVYFWLMPAVYGLSFGSLFNNYLNSKGFPIISIILPAVALVINIGLNLWLIPVMGINGAALSTSFSYFLWFILIVYFEQKDSQGKMLKYLLPTRKDIIDLCQETMADLKGLGEKFLHKTA
>NC_020449.1|WP_044279062.1|1812496_1813543_+|glycosyltransferase-family-9-protein
MKKVTQGKVLLIHTWGIGDLILLTPVLQAVKTLYPLLELEILFFPKSAAIPVTDAPFISKIHFTGWKANLLLPTLFQLRKEKYQAVLFSSGVRPWKTWLFMLLLKAEIKVGEYKKFRYPGLSVYVKFNPLLSRTRSNYTLFQSFLNLPSWEEAIARQNELNLYPYFHLTEANHQWAENFLAENNLTGKKVIGIHPGSMAKNKRRRWNKEYFIALIEKLKRQYDYPILIIAGPDEIEVGKAIQARTKTLLLQNALLENVAAVISRLHFFINTDSGLGHIASCFGIKGLTIFGPANELQTAPFSNNSNIIRYPVDCAPCIDKKKKPKCTLDCLLKLTPDMVFKRVQELLD
>NC_020449.1|WP_015425267.1|1813539_1814814_-|hypothetical-protein
MNKNKILMIINEFPPTGQSGVQRPLKFVKYAVKAGWEVHIIAPKKPVRKVVDYSLLQEIPKEAHIYRVAGLGIKTPDESKMVNAHFAETAPPSKIERAFWRLAKLVNDFLFPYDKQIGWMPFAYYTACKIIKKQQIRNIYITAFPYSAFLVGLALKKKYQDKIFWVADYRDSWQFGIMIEKLVFPFRLKTIRKTDDKVLATCDAAVFVTPETRLEYINKHSWLKEKSYYIPNGYDEDDFTGITPKKFDKLTLVLMGKLTKVYGSPLNLLKALEDCFPNNYQVIHIGNIDKAILHNIKTSGYTSYNYLGYQKHSDAIAYSLGADINLIILNENPTAKYWYPGKLFELLRCGKPILALGPKESNLEKILSATKRGRYAYINDKEQIKAQIEYILKNHDQFDTSPETIKQYSREELCKQLLAIYEKG
>NC_020449.1|WP_015425268.1|1814800_1815973_-|glycosyltransferase
MPISKRKLLLITDLYPNKFNPVNGVFVQQQAIELSRYYQVQVVAACDKNPYLVYEHHQDGFPVKLICYPYWQKYFLTSLITYRILALPAIKRCYKRFQPDLIHIHDYRHIPELFWLKPWLNKLSVPKYLTLHNIRTHPERLKNNPRIGFYRWALKKTLTGWDHIFTVNSKIAKWVKQYNPASKVTIIGNAISEFADVGPQLIEPYKNILLADYFHLISIGNLFTEKGFSYLIEAIYLLKKEGLQVQLIIAGDGDRRKELENQVKTKNLNEEVIFLGRIENTLLRNILPLFDLFVLASYSETFGIVFLEAMFAGLPVIGIKEEGIYGLAEDGKQALFAEPKNSKDLAAKIKLLMMKPLLREEIAKAGQRLVQEKYMLKELIKRIIAVYEQK
>NC_020449.1|WP_015425269.1|1816134_1817874_-|chitobiase/beta-hexosaminidase-C-terminal-domain-containing-protein
MKKALTLIVMLAATAAMFAQVYAVDLFFSEYVEGTSNNKALEIFNGTGNPVDLSNYTVKLASNGGTWSSTNISNMSGVLDDGDVYVIANSQAEASILAIANETSTVTYYNGNDVVGLFNGNTLIDIIGVYQQDPGTANWPVAGTPSATAEHTLIRKPTVIQGNTDFLTGAGTNADDSEWIVYPQNYFADLGQHTFNPGAPEQAATPTFNPPAGVYANPISVTISSTTPGATIRYTTNGTEPNETSTLYSAPIAMVTTTTLKAKAYATGFSPSYTATANYIFPVQVSNIAALRASAADGTTIYQLANEVILTMQQNWRHQKFIQDATAAILIDDYNNIMNTPYNIGDGITGITGTLNRYTTGMLQFWPVINPGPATSTGNVIIPQLVTIAEITNNAELYQSRLMRLDNVHYASPSGNYAAQTSYDLLDATGTIVMRTQFSDADYIGTPMHQGNFNMYVIVTQYNAATQVTPRMLSDFNPVANDDNVLTPMQIELIGNYPNPFNPETTIRFKMEKSAPAEVIIYNEKGQIVKTFSTIATQGINSVVWDGKDNNGHPVASGVYLFRLKSGSYSSTKKMVLMK
>NC_020449.1|WP_044279063.1|1817879_1818680_-|phosphatidate-cytidylyltransferase
MSELAKRVLVAVILIPIVLIVLYYRGLPLVKTLLIITFLGSWEYAQMLNKAGIKIHYVWLVFNSLFYLAFVYIKGKDLSLLWLVLFLAIGEAILTWEKELSVPRLFAVLFGFVYTALFPALIARLGLYYAEHNFLLALILLIWIVDSVAYFAGIKIGKHRNITAISPQKSLEGFIAGVLAPWLILIILYICKVEILPFSYLALLAVASGIFGQIGDLAESMLKRFCKVKNSSNLLPGHGGILDRCDSCLFAGSFLYCALEILTKVR

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Crispr_ID: NC_020449_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_29

1851804-1851890

Orphan

Consensus_repeat	Method
ATTTTCACCATCTCACTATTTTGCCATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_29

>merge|NC_020449|29|1851804-1851890|CRISPRCasFinder
ATTTTCACCATCTCACTATTTTGCCATCTCGCTACCTTGCTATTTTCACCATCTCACTATTTCGCCATCTCGCTACCTTGCCATTTT

>NC_020449|29|26|1851804-1851890|CRISPRCasFinder
ATTTTCACCATCTCACTATTTTGCCATCTC	GCTACCTTGCTATTTTCACCATCTCAC
TATTTCGCCATCTCGCTACCTTGCCATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044279076.1\|1850844_1851657_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NC_020449.1\|WP_015425286.1\|1840265_1841207_+\|tyrosine-recombinase	unknown	unknown	gnl\|CDD\|274043
NC_020449.1\|WP_044279075.1\|1849933_1850830_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_020449.1\|WP_015425291.1\|1847133_1849473_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_020449.1\|WP_015425302.1\|1860056_1860503_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NC_020449.1\|WP_015425296.1\|1853328_1854846_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NC_020449.1\|WP_015425288.1\|1842368_1843175_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NC_020449.1\|WP_044279078.1\|1859078_1859393_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NC_020449.1\|WP_015425289.1\|1844611_1845901_-\|amidase	unknown	unknown	gnl\|CDD\|223232
NC_020449.1\|WP_015425304.1\|1861336_1861573_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_020449.1\|WP_015425287.1\|1841355_1842363_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NC_020449.1\|WP_044279074.1\|1849469_1849934_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_020449.1\|WP_015425299.1\|1858443_1859097_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NC_020449.1\|WP_015425295.1\|1851937_1853335_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NC_020449.1\|WP_015425297.1\|1854856_1855771_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NC_020449.1\|WP_015425298.1\|1857084_1858425_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_020449.1\|WP_015425285.1\|1838854_1840312_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
NC_020449.1\|WP_015425303.1\|1860499_1861336_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425301.1\|1859462_1860038_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279073.1\|1845946_1847137_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044279076.1\|1850844_1851657_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	2.7532e-46
NC_020449.1\|WP_015425286.1\|1840265_1841207_+\|tyrosine-recombinase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	4.95569e-115
NC_020449.1\|WP_044279075.1\|1849933_1850830_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.44111e-62
NC_020449.1\|WP_015425291.1\|1847133_1849473_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_020449.1\|WP_015425302.1\|1860056_1860503_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	4.744e-50
NC_020449.1\|WP_015425296.1\|1853328_1854846_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	2.61843e-150
NC_020449.1\|WP_015425288.1\|1842368_1843175_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.19706e-94
NC_020449.1\|WP_044279078.1\|1859078_1859393_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.85839e-13
NC_020449.1\|WP_015425289.1\|1844611_1845901_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	1.21221e-89
NC_020449.1\|WP_015425304.1\|1861336_1861573_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.87735e-35
NC_020449.1\|WP_015425287.1\|1841355_1842363_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	1.76402e-89
NC_020449.1\|WP_044279074.1\|1849469_1849934_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	9.44744e-63
NC_020449.1\|WP_015425299.1\|1858443_1859097_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	9.99164e-104
NC_020449.1\|WP_015425295.1\|1851937_1853335_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	6.94973e-136
NC_020449.1\|WP_015425297.1\|1854856_1855771_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	5.79793e-30
NC_020449.1\|WP_015425298.1\|1857084_1858425_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_020449.1\|WP_015425285.1\|1838854_1840312_+\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NC_020449.1\|WP_044279073.1\|1845946_1847137_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.1136e-162

>NC_020449.1|WP_044279076.1|1850844_1851657_-|cyclase-family-protein
MELNSFFEFMQSLKMYDLTQPLSIHTPPWPSYMPLGIQYFKRIAGAHSGQGANGQIITTSNHVGTHIDGEIHFFASGRSIGQVPMEEWIGPGVVVDISDSVNDYDLYSPELLMQKAEIKKGDILIINTGYHRYAWDQPESDELRYFVKHPGPDPSFHTWALDMHLKWIGVDCGSADHPMNTIIRNWHPGSFNEAEQKLIAKYGKTWDEMFPPEEYYQVMHLKLFPKKLVHAENLGGDIDKISNKRVWIGLFPLRGIELESSMCRIMAWEP
>NC_020449.1|WP_044279075.1|1849933_1850830_-|xanthine-dehydrogenase-family-protein-subunit-M
MALAHTFDYQRPSTLIEALQLKAKYKDKALFLAGGTDLIVNIREGMLKPDLLIDIKGISELLKLNWEKETLFIGSNVTFAQLIENELVQKHFILLHDACKTIGSTGIRARATLTGNICSAVPSLDSAPALLCYEATVHCASPLSQREIPVTEWFLAPRKTALQEDEIVTGISLKRIPDSSGIYLKLGRYSGEDLAQAGWGILMTADKQYRLAHCALSPLPKRAYYIEDLLNNSNPLNADLIEKAIALIPSEINPITDIRATQEFRMYISGIMLKRGLTAIQERISGKYIEPRKLLGDV
>NC_020449.1|WP_044279074.1|1849469_1849934_-|(2Fe-2S)-binding-protein
MKEISLILNNEPRNVQVENNEILLDVLRNKLGIKSPKCGCERGDCGACTVLLDGKAVRSCLILAVEAENHSITTLEGISREKLSALQKAFIEFNSFQCGYCAPGIILAVTELLEKNPHPSLEEIKESIAGNLCRCTGYTPIFDAIMSLTGKGVK
>NC_020449.1|WP_015425291.1|1847133_1849473_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MKDYKYIGKDVTRIDALDKISGAATFVDDIDFGANLLYAELIESTEASALIKNIDVSEALKVKGVYKIFTGKDFHNRFGLYMKDRYVFAQERVRFVGEQIGAVVAFTPEAAKSAVSLVKVEYEPLPAVLNQMDALKSDAPLLHPEVENYPRVPWFYPKGGTNIAHWRKIRKGDLEKGFANADVILEETYSVPRYAHCALETHIAVAKFDHSGRLTVWSSSQSPHTQRNLFAEALGLSHKDVRVITPYVGGGFGGKAGVTMEIIPAVLATQLKGYAVKLRYSREQEFTNTYQRLGLIAKIKMGATKEGIITALEHQLYWDAGAYVEYGANVVNAVGLSASGPYRIDNVSIDSICVYTNLPPGGPYRGFGYSEMLFGLESHISRMAHQLNIDEVEFRRINAIKTGDKTAYGAKMNPSGLQECIDKAAKAIDWGKKPISEDPTKVIGQGFAIFWKAPAMPPNASSSAFLKFNEDATINLLISGMDIGQGYQTVMAQIAGEILSIPPAKIRVETPDTDRNPYEWQTVASHITWSCGNAVKNAALDAREQIFTLIHRVYHFPLDALYLEDEAVKCKTDPAFILPLKNFVVEGIMTEDGTFKGGPINGRGMFMPEFASTKDNPETSQGGHPNVHYTVGAAGLNLEIDQETGKMKVLKVALAIDAGKAINPDLVKGQITGGLLQGLATVLYEDMRFNEKGKLLNPNLTDYKIPTAKDVPEEIIPIIVEVPQPDGPFGARGIGEHTMLPAAPMIANAIEDALGIRIKSLPITAEKVALTCLREKAKQ
>NC_020449.1|WP_044279073.1|1845946_1847137_-|CoA-transferase
MNKPLQDVVVLDLSRVLAGPFCTMILSDLGAEIIKVEHPEKGDDSRAYGPFLHNRSLYFLSINHGKKSISLNLKKPQGRELFLKLIEHCDVLVENFRPGTMEKFNLGYELLKEKYPQLIYAAVSGFGHSGPDSQKPAYDILVQARGGIMSITGWQNMAPTRVGMSLGDITASLFTAIGINSALYQRTKTGLGQKIDVAMLDGQIAILENALVRYQAEGISPKPLGNRHPTISPFQAYKARDNYFVIAVGNDNLWDTFCKALEIPELISDKRFCNNRLRTENIDALNAILEPIFTAKPASWWLEIMEKSGIPCSSINNIESVMQDPQLLARNMFVEVNDPIAGTVKIAGNPIKMSSFPDSAVHEPAPEIGAHNKEIYCERLGLSEEDLAELQKAGVI
>NC_020449.1|WP_015425289.1|1844611_1845901_-|amidase
MNSAIFPDNLKELSFALRQGKLPLQDYLIQTLTDIEKKEPVLCALEPEENRQERLLKQAEELLSRFPQPELRPPFFGVLIGVKDLFNVDGLSTRAGSKLPPEVFSGKEAEIVTRLKNLGALILGKTTCTEFAYFQPAKTKNPYNPNHTPGGSSSGSAAAVSAGYCLLALGTQTIGSIIRPASYCGVTGLKPSYGLFSLQGVFPFSQTVDHLGFITKQVADLAFLLPLLHLSVSATITDRPVLGAVNGSYLQQTDSSVQENYCSALDKLQKKGYKIVTCDPFGDINSINASHNALIAAEFSLNHKSLYERYQELYSDSSKELYARGLQISSAELEILRQQTIILREKIINLMQEQKIDLWITPSTTTTAPAGLKSTGSPLMSLPWTNCGLPALTIPNGLDANGLPFGLQFVASYNEDLPLVRMVQRIVNT
>NC_020449.1|WP_015425288.1|1842368_1843175_+|ABC-transporter-ATP-binding-protein
MPNCILEAKDIRKTFLFKGALVVVLDKLQFSIQEGQFVSIVGPSGCGKSTFLELLAGITKPDNGNIYLEGNEITGKTGFLGYMPQDDLLFPWLTTMQNILLPVKVQGKDEKEAKKKIIELLPLFGLMNYTDHLPYQLSGGLKQRVALLRTYMSSAEILLLDEPLAKLDALTRSQLQTWLKDIVHLLNLTIILVTHDIDEAIMLSDRIDLMSINPGTFMESIYLDRNAPLSAEEQLKLKTKIRSKLVNEEEKSENGKKIGEPEKSDKVI
>NC_020449.1|WP_015425287.1|1841355_1842363_+|ABC-transporter-substrate-binding-protein
MKNRVNLFNLFCYIIIALTLVLCLSSCKTKSSKQEQAGLQKVSVTLDWTPNTNHTGIYVANELGYFKEQGLDVDILQPGQNVTDQIVATGKSEFGVSYQENVIRARSENIPLVSIAAVIQHNTSGFASLKKAGIKSPLDFEGKRYGSWDSPSELAILKATMEKYGADFNKVNVISGIYDFFSTIGKDADFEWIYYGWDGVEAERRGIALNYIPLKEIDPVFDYYTPVIISSEDYLAKNPETAKKFMTALQKGYEYCIAKPDSAAAILLKNVPELNAEQVKRSMQYLAKEYQSDAESWGIQKSDVWKRFCEWMYQQRLIQLAVDPNKAFSNEYLPQ
>NC_020449.1|WP_015425286.1|1840265_1841207_+|tyrosine-recombinase
MSTSLKKPRTITAGIEEELSPALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFCPKEIGNYETDDITKYLLSLQEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA
>NC_020449.1|WP_015425285.1|1838854_1840312_+|IMP-dehydrogenase
MNLRKAYTFDDVLLVPQKSDVLPAEVDLSTKITAQISLRIPVISSAMDTVTESAMAIAMAREGGLGIIHKNLSIEEQAKQVSLVKRAESGIVTHPYILSPEDTLAYVLALRDAHHIGGFPVVENEFLVGILTSRDIRFVTNPQTKVKDLMTPKEKLITAKTGISLDKAIELLQKHRLEKLLLINEEGKLEGMITVKDIMKRLNYPEAVQDDKNRLLVGAAIGVTGDYLERAKELLNAGADLLVIDTAHGHHKNIGIALQKVKKHLNCQVIAGNVATADACRYLIENGADAVKIGIGPGSICTTRVIAGIGVPQLSAIMDCALEAGKYNIPIIADGGIKFSGDIVKALAGGASAVMIGSLFAGCDESPGESIIYNGRRFKSYRGMGSLSAMKQGSKDRYFQDEQVEDNKLVAEGIEGMVPYKGPVKDFLYQLMGGLRSGMGYCGTATIQELQEKAEFIEITTAGLKESHPHDVHITKETPNYYSGD
>NC_020449.1|WP_015425295.1|1851937_1853335_-|DUF1116-domain-containing-protein
MLKLNKDKPKVINIGLEKFAVDLKTQGIDVVNLLWKPPLPVENSYHHKINSLSENIIAPANKKALEIINSGKAVLTGMDVALKVIPGMHKDLILHSGPPVSWDRMCGPMRGAIIGALIYEDRAKNAEEAEKIAASGKIEFAPCHEHNCTGPMAGIISPSMPVFIIKNESYGNFTYATQNEGLGKVLRYGAYSEEVINRLKWMEKVLYPVLKRAIEYAGTINIQGLIAQALNMGDELHNRNRAGTSLFIRQIAPAIIKTMTNPEESAAALDFINGNDHFFLNLSMPASKAILDPARNISGSSIVVAMARNGTDFGIQVSGTGNKWFTGTAPVPDALYFPGFTKEDANPDIGDSSITETGGLGGFALAAAPAIVQFVGGTAKEAINYTLSMYNICFGESSLYQIPALDFRGTPLGIDVVKVIQNNIAPVIDTGVAHKNPGVGQVGAGVVKAPFEPFIKAYKTLADMY
>NC_020449.1|WP_015425296.1|1853328_1854846_-|acyl-CoA-synthetase-FdrA
MPIKAKIIAGKYLDSVKLMLISRELRSLKGVLEAVAIVATSENREILKASDMLAEEINSASENDIVIVIKADNAKNAAEAINKAEELINKPSTNEYNQTPIPQAFTLEKAIATLGGADLCLISIAGKYAAAEAEKALEKGLHILLFSDNVSIEDELSLKQKALKKGLLMMGPDCGTAILNGVPLAFANNVPRGKIGIVSASGTGLQEISTTIANLSGGISQAFGTGGRDGKKEIGGLMLTACLEYLLEDENTEVIIVTGKPPCEEVQKKLWELISHSSKPVIANFLIPMQVPELPNLYYVRSLSETAFFACKKAGIEVKNAKLAEDFPLPKLRGPYLRGLYSGGTLCQEAIQVYLDNFGCEPFNNVTDQAFFRLTDGWQTKENSIIDLGADEFTIGRPHPMIDYSLRLQKLAQEANDPKVGIILLDVVLGFGAHPDPAEELVPALQKLPADLVVVCHLLGTDGDPQNRQKQKKELEKAGAYVFTSHHSACEFVCQCLRSYRSAKC
>NC_020449.1|WP_015425297.1|1854856_1855771_-|DUF2877-domain-containing-protein
MQRKNNYTLFRIGELVPSGTYTKVHSCFERVINFAAEDIVISLCESSICAGPYRLILKGRIPLAKELKVTEKEVVINQEISLPYSQDNIWKIPSIHPHQNAQKTFLLCEKLLNFFIGEEKNNLLSLLFQPPSSQDEFLLQFRNCLINGINNLFQQQYTLFAQQIKRRGLGSTPAGDDFLIGYIICLSWLIANGRKDLIKQREEIYQTALDNDLLVNTFLHQAYYLRPDDDWANFLLALSENDEINLTKYINLIMNSGESSGKDMLSGFVFCLLFNWFWSAEIAKCRSCIFPDVLAALNVLSVNI
>NC_020449.1|WP_015425298.1|1857084_1858425_-|signal-recognition-particle-protein
MFENLSERLDKIFRNLRGKGYLTEDNIKAGLREVRMALLEADVNFRIVKNFIAEVEKRALGVEVMKSLTPGQQVVKIVYEQLVNLMDTEGFQFKVFNNRLTKVMLVGLQGSGKTTACAKLAAFYRKKGIKPMLVACDVYRPAAVDQLKILGKQIGIPVVSEDTKNVLKIADSALSMADKEMVNLLIFDTAGRLHIDEPMMEEVARLKTHIKPDYIFFVADATTGQDAVTIAKEFYDKLAFDAVILTKLDGDARGGAALSIKAVTGKPVAFVGIGEKISDLEIFYPDRMASRILGMGDVLTLIEKAEEAIDMEAEEKLARKMLKNQFTLNDFLKQLQSIKKMGSLESIIRMIPGLGRKLPADLKIDDKALKHIEAIIQSMTEKEREHPEIINGSRRLRIAKGCGLSVTEVNRLLRQFEEMKKMLKKVNTPQGRKHIERMMGGNRPEI
>NC_020449.1|WP_015425299.1|1858443_1859097_-|ribulose-phosphate-3-epimerase
MQKTQIAPSLLAADFGNLDSEITSLEAAGADILHLDIMDGHYVPNLSFGFPVIRTIRFLSKLPLDVHLMVTNPDFHISLLLDMDVQWVSFHQETFYHSHRLIQTLKEKGIKAGLALNPGTPIGTLEALLPDLDYILVMSVNPGFSAQDFIPSAIYKIWDLYNLRKKNNYRYLIEVDGGVTAANAKALKEAGTDILVSASYIFSSHDYSQAISALRNA
>NC_020449.1|WP_044279078.1|1859078_1859393_-|DUF721-domain-containing-protein
MAFSSFSRLSENLIYRLGGDKYRSFIHIYLSWSKIVGEILASQSHPVKVENGVLFVAVQNNTWMQELILIKDDIIAKYKSIYEEEIADIVFLISSPKRKCKRRK
>NC_020449.1|WP_015425301.1|1859462_1860038_-|hypothetical-protein
MSDLWFKIKQIITLVVFVAVLSLLGMISGRPIMIVAYGVFFLVVVAIMFYMTRKRQRHFEKVKGSSQLFRKIFGILLMILALITPPVIILRTNLITLPETVKSGAALGIVSGITVLFIVLTLLAVYFINYRGSQVSNRVIGYILYFIAAIVPGFLMSRVEKTTIGIGSVYYVALIVLILSYSGYGLLSNKE
>NC_020449.1|WP_015425302.1|1860056_1860503_-|50S-ribosomal-protein-L9
MKVIMLKTIEKVGNQGDVVNVKRGYARNYLVPRGFALYATPANLKNLNAIKNKLADEEQKLTEELKNLAEKIDSTKLVFMRKVDEHGTMFGSVSELDIIRSLEEQGINIQKNDLEMDKHFKELGEFQVPIHLRKDIVCTLNISIEPEQ
>NC_020449.1|WP_015425303.1|1860499_1861336_-|hypothetical-protein
MPIYPVIFGALSLLSPFLGLILYMLYVAKTAELNLTKPLQAFIMFIPIPVLLLIFDPQTSTRLMCLDAILAVGLPVLVFLMVLKHNHILSNSFLAAFLVMFAWGMLRYYLFKTYQDQLFEQGMQVVKDKMPALLNNDLLQQTLPFWKGIIPSIWVISQAIAWLIGFLLFEGRLQIPNRIENLRFPVYFNLLIIAVLPLYFFDQTKLLFYNLLLSLCIIPFFQGAGLVWQRLGMIFSNRIISGLFMLIIVLYANILLVLLGFGNMWFTKRNITPGGYTE
>NC_020449.1|WP_015425304.1|1861336_1861573_-|30S-ribosomal-protein-S18
MNTTDRKKKYTRKKYCRFCANKEIQIDYKNIDVLKPYISEVGKIEPARLTGTCAKHQRKLTTEIKRARQMALIPYVIE

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Crispr_ID: NC_020449_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_30

1856199-1856314

Orphan

Consensus_repeat	Method
GAAGAACCTACAAAACTATCCTTCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_30

>merge|NC_020449|30|1856199-1856314|CRISPRCasFinder
GAAGAACCTACAAAACTATCCTTCTTTTGGGACAAAAGTTCCGGAGGAACGACAGATAATAACAACGGGTTTTAACCCGGTGAAAAGTGAAGAACCTACAAAACAATCCTTCTTTT

>NC_020449|30|27|1856199-1856314|CRISPRCasFinder
GAAGAACCTACAAAACTATCCTTCTTTT	GGGACAAAAGTTCCGGAGGAACGACAGATAATAACAACGGGTTTTAACCCGGTGAAAAGT
GAAGAACCTACAAAACAATCCTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_044279076.1\|1850844_1851657_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NC_020449.1\|WP_015425299.1\|1858443_1859097_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NC_020449.1\|WP_044279075.1\|1849933_1850830_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_020449.1\|WP_015425295.1\|1851937_1853335_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NC_020449.1\|WP_015425302.1\|1860056_1860503_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NC_020449.1\|WP_015425307.1\|1862323_1862920_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_020449.1\|WP_015425296.1\|1853328_1854846_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NC_020449.1\|WP_015425288.1\|1842368_1843175_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NC_020449.1\|WP_044279078.1\|1859078_1859393_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NC_020449.1\|WP_015425289.1\|1844611_1845901_-\|amidase	unknown	unknown	gnl\|CDD\|223232
NC_020449.1\|WP_015425306.1\|1862036_1862324_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|376503
NC_020449.1\|WP_044279074.1\|1849469_1849934_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_020449.1\|WP_015425304.1\|1861336_1861573_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_020449.1\|WP_015425291.1\|1847133_1849473_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_020449.1\|WP_015425297.1\|1854856_1855771_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NC_020449.1\|WP_015425298.1\|1857084_1858425_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_020449.1\|WP_015425303.1\|1860499_1861336_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425301.1\|1859462_1860038_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279079.1\|1861582_1862026_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099
NC_020449.1\|WP_044279073.1\|1845946_1847137_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044279076.1\|1850844_1851657_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	2.7532e-46
NC_020449.1\|WP_015425299.1\|1858443_1859097_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	9.99164e-104
NC_020449.1\|WP_044279075.1\|1849933_1850830_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.44111e-62
NC_020449.1\|WP_015425295.1\|1851937_1853335_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	6.94973e-136
NC_020449.1\|WP_015425302.1\|1860056_1860503_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	4.744e-50
NC_020449.1\|WP_015425307.1\|1862323_1862920_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	3.43124e-62
NC_020449.1\|WP_015425296.1\|1853328_1854846_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	2.61843e-150
NC_020449.1\|WP_015425288.1\|1842368_1843175_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.19706e-94
NC_020449.1\|WP_044279078.1\|1859078_1859393_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.85839e-13
NC_020449.1\|WP_015425289.1\|1844611_1845901_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	1.21221e-89
NC_020449.1\|WP_015425306.1\|1862036_1862324_-\|30S-ribosomal-protein-S6	gnl\|CDD\|376503	pfam01250, Ribosomal_S6, Ribosomal protein S6.	1.65179e-33
NC_020449.1\|WP_044279074.1\|1849469_1849934_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	9.44744e-63
NC_020449.1\|WP_015425304.1\|1861336_1861573_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.87735e-35
NC_020449.1\|WP_015425291.1\|1847133_1849473_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_020449.1\|WP_015425297.1\|1854856_1855771_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	5.79793e-30
NC_020449.1\|WP_015425298.1\|1857084_1858425_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_020449.1\|WP_044279079.1\|1861582_1862026_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	8.59909e-40
NC_020449.1\|WP_044279073.1\|1845946_1847137_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.1136e-162

>NC_020449.1|WP_015425297.1|1854856_1855771_-|DUF2877-domain-containing-protein
MQRKNNYTLFRIGELVPSGTYTKVHSCFERVINFAAEDIVISLCESSICAGPYRLILKGRIPLAKELKVTEKEVVINQEISLPYSQDNIWKIPSIHPHQNAQKTFLLCEKLLNFFIGEEKNNLLSLLFQPPSSQDEFLLQFRNCLINGINNLFQQQYTLFAQQIKRRGLGSTPAGDDFLIGYIICLSWLIANGRKDLIKQREEIYQTALDNDLLVNTFLHQAYYLRPDDDWANFLLALSENDEINLTKYINLIMNSGESSGKDMLSGFVFCLLFNWFWSAEIAKCRSCIFPDVLAALNVLSVNI
>NC_020449.1|WP_015425296.1|1853328_1854846_-|acyl-CoA-synthetase-FdrA
MPIKAKIIAGKYLDSVKLMLISRELRSLKGVLEAVAIVATSENREILKASDMLAEEINSASENDIVIVIKADNAKNAAEAINKAEELINKPSTNEYNQTPIPQAFTLEKAIATLGGADLCLISIAGKYAAAEAEKALEKGLHILLFSDNVSIEDELSLKQKALKKGLLMMGPDCGTAILNGVPLAFANNVPRGKIGIVSASGTGLQEISTTIANLSGGISQAFGTGGRDGKKEIGGLMLTACLEYLLEDENTEVIIVTGKPPCEEVQKKLWELISHSSKPVIANFLIPMQVPELPNLYYVRSLSETAFFACKKAGIEVKNAKLAEDFPLPKLRGPYLRGLYSGGTLCQEAIQVYLDNFGCEPFNNVTDQAFFRLTDGWQTKENSIIDLGADEFTIGRPHPMIDYSLRLQKLAQEANDPKVGIILLDVVLGFGAHPDPAEELVPALQKLPADLVVVCHLLGTDGDPQNRQKQKKELEKAGAYVFTSHHSACEFVCQCLRSYRSAKC
>NC_020449.1|WP_015425295.1|1851937_1853335_-|DUF1116-domain-containing-protein
MLKLNKDKPKVINIGLEKFAVDLKTQGIDVVNLLWKPPLPVENSYHHKINSLSENIIAPANKKALEIINSGKAVLTGMDVALKVIPGMHKDLILHSGPPVSWDRMCGPMRGAIIGALIYEDRAKNAEEAEKIAASGKIEFAPCHEHNCTGPMAGIISPSMPVFIIKNESYGNFTYATQNEGLGKVLRYGAYSEEVINRLKWMEKVLYPVLKRAIEYAGTINIQGLIAQALNMGDELHNRNRAGTSLFIRQIAPAIIKTMTNPEESAAALDFINGNDHFFLNLSMPASKAILDPARNISGSSIVVAMARNGTDFGIQVSGTGNKWFTGTAPVPDALYFPGFTKEDANPDIGDSSITETGGLGGFALAAAPAIVQFVGGTAKEAINYTLSMYNICFGESSLYQIPALDFRGTPLGIDVVKVIQNNIAPVIDTGVAHKNPGVGQVGAGVVKAPFEPFIKAYKTLADMY
>NC_020449.1|WP_044279076.1|1850844_1851657_-|cyclase-family-protein
MELNSFFEFMQSLKMYDLTQPLSIHTPPWPSYMPLGIQYFKRIAGAHSGQGANGQIITTSNHVGTHIDGEIHFFASGRSIGQVPMEEWIGPGVVVDISDSVNDYDLYSPELLMQKAEIKKGDILIINTGYHRYAWDQPESDELRYFVKHPGPDPSFHTWALDMHLKWIGVDCGSADHPMNTIIRNWHPGSFNEAEQKLIAKYGKTWDEMFPPEEYYQVMHLKLFPKKLVHAENLGGDIDKISNKRVWIGLFPLRGIELESSMCRIMAWEP
>NC_020449.1|WP_044279075.1|1849933_1850830_-|xanthine-dehydrogenase-family-protein-subunit-M
MALAHTFDYQRPSTLIEALQLKAKYKDKALFLAGGTDLIVNIREGMLKPDLLIDIKGISELLKLNWEKETLFIGSNVTFAQLIENELVQKHFILLHDACKTIGSTGIRARATLTGNICSAVPSLDSAPALLCYEATVHCASPLSQREIPVTEWFLAPRKTALQEDEIVTGISLKRIPDSSGIYLKLGRYSGEDLAQAGWGILMTADKQYRLAHCALSPLPKRAYYIEDLLNNSNPLNADLIEKAIALIPSEINPITDIRATQEFRMYISGIMLKRGLTAIQERISGKYIEPRKLLGDV
>NC_020449.1|WP_044279074.1|1849469_1849934_-|(2Fe-2S)-binding-protein
MKEISLILNNEPRNVQVENNEILLDVLRNKLGIKSPKCGCERGDCGACTVLLDGKAVRSCLILAVEAENHSITTLEGISREKLSALQKAFIEFNSFQCGYCAPGIILAVTELLEKNPHPSLEEIKESIAGNLCRCTGYTPIFDAIMSLTGKGVK
>NC_020449.1|WP_015425291.1|1847133_1849473_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MKDYKYIGKDVTRIDALDKISGAATFVDDIDFGANLLYAELIESTEASALIKNIDVSEALKVKGVYKIFTGKDFHNRFGLYMKDRYVFAQERVRFVGEQIGAVVAFTPEAAKSAVSLVKVEYEPLPAVLNQMDALKSDAPLLHPEVENYPRVPWFYPKGGTNIAHWRKIRKGDLEKGFANADVILEETYSVPRYAHCALETHIAVAKFDHSGRLTVWSSSQSPHTQRNLFAEALGLSHKDVRVITPYVGGGFGGKAGVTMEIIPAVLATQLKGYAVKLRYSREQEFTNTYQRLGLIAKIKMGATKEGIITALEHQLYWDAGAYVEYGANVVNAVGLSASGPYRIDNVSIDSICVYTNLPPGGPYRGFGYSEMLFGLESHISRMAHQLNIDEVEFRRINAIKTGDKTAYGAKMNPSGLQECIDKAAKAIDWGKKPISEDPTKVIGQGFAIFWKAPAMPPNASSSAFLKFNEDATINLLISGMDIGQGYQTVMAQIAGEILSIPPAKIRVETPDTDRNPYEWQTVASHITWSCGNAVKNAALDAREQIFTLIHRVYHFPLDALYLEDEAVKCKTDPAFILPLKNFVVEGIMTEDGTFKGGPINGRGMFMPEFASTKDNPETSQGGHPNVHYTVGAAGLNLEIDQETGKMKVLKVALAIDAGKAINPDLVKGQITGGLLQGLATVLYEDMRFNEKGKLLNPNLTDYKIPTAKDVPEEIIPIIVEVPQPDGPFGARGIGEHTMLPAAPMIANAIEDALGIRIKSLPITAEKVALTCLREKAKQ
>NC_020449.1|WP_044279073.1|1845946_1847137_-|CoA-transferase
MNKPLQDVVVLDLSRVLAGPFCTMILSDLGAEIIKVEHPEKGDDSRAYGPFLHNRSLYFLSINHGKKSISLNLKKPQGRELFLKLIEHCDVLVENFRPGTMEKFNLGYELLKEKYPQLIYAAVSGFGHSGPDSQKPAYDILVQARGGIMSITGWQNMAPTRVGMSLGDITASLFTAIGINSALYQRTKTGLGQKIDVAMLDGQIAILENALVRYQAEGISPKPLGNRHPTISPFQAYKARDNYFVIAVGNDNLWDTFCKALEIPELISDKRFCNNRLRTENIDALNAILEPIFTAKPASWWLEIMEKSGIPCSSINNIESVMQDPQLLARNMFVEVNDPIAGTVKIAGNPIKMSSFPDSAVHEPAPEIGAHNKEIYCERLGLSEEDLAELQKAGVI
>NC_020449.1|WP_015425289.1|1844611_1845901_-|amidase
MNSAIFPDNLKELSFALRQGKLPLQDYLIQTLTDIEKKEPVLCALEPEENRQERLLKQAEELLSRFPQPELRPPFFGVLIGVKDLFNVDGLSTRAGSKLPPEVFSGKEAEIVTRLKNLGALILGKTTCTEFAYFQPAKTKNPYNPNHTPGGSSSGSAAAVSAGYCLLALGTQTIGSIIRPASYCGVTGLKPSYGLFSLQGVFPFSQTVDHLGFITKQVADLAFLLPLLHLSVSATITDRPVLGAVNGSYLQQTDSSVQENYCSALDKLQKKGYKIVTCDPFGDINSINASHNALIAAEFSLNHKSLYERYQELYSDSSKELYARGLQISSAELEILRQQTIILREKIINLMQEQKIDLWITPSTTTTAPAGLKSTGSPLMSLPWTNCGLPALTIPNGLDANGLPFGLQFVASYNEDLPLVRMVQRIVNT
>NC_020449.1|WP_015425288.1|1842368_1843175_+|ABC-transporter-ATP-binding-protein
MPNCILEAKDIRKTFLFKGALVVVLDKLQFSIQEGQFVSIVGPSGCGKSTFLELLAGITKPDNGNIYLEGNEITGKTGFLGYMPQDDLLFPWLTTMQNILLPVKVQGKDEKEAKKKIIELLPLFGLMNYTDHLPYQLSGGLKQRVALLRTYMSSAEILLLDEPLAKLDALTRSQLQTWLKDIVHLLNLTIILVTHDIDEAIMLSDRIDLMSINPGTFMESIYLDRNAPLSAEEQLKLKTKIRSKLVNEEEKSENGKKIGEPEKSDKVI
>NC_020449.1|WP_015425298.1|1857084_1858425_-|signal-recognition-particle-protein
MFENLSERLDKIFRNLRGKGYLTEDNIKAGLREVRMALLEADVNFRIVKNFIAEVEKRALGVEVMKSLTPGQQVVKIVYEQLVNLMDTEGFQFKVFNNRLTKVMLVGLQGSGKTTACAKLAAFYRKKGIKPMLVACDVYRPAAVDQLKILGKQIGIPVVSEDTKNVLKIADSALSMADKEMVNLLIFDTAGRLHIDEPMMEEVARLKTHIKPDYIFFVADATTGQDAVTIAKEFYDKLAFDAVILTKLDGDARGGAALSIKAVTGKPVAFVGIGEKISDLEIFYPDRMASRILGMGDVLTLIEKAEEAIDMEAEEKLARKMLKNQFTLNDFLKQLQSIKKMGSLESIIRMIPGLGRKLPADLKIDDKALKHIEAIIQSMTEKEREHPEIINGSRRLRIAKGCGLSVTEVNRLLRQFEEMKKMLKKVNTPQGRKHIERMMGGNRPEI
>NC_020449.1|WP_015425299.1|1858443_1859097_-|ribulose-phosphate-3-epimerase
MQKTQIAPSLLAADFGNLDSEITSLEAAGADILHLDIMDGHYVPNLSFGFPVIRTIRFLSKLPLDVHLMVTNPDFHISLLLDMDVQWVSFHQETFYHSHRLIQTLKEKGIKAGLALNPGTPIGTLEALLPDLDYILVMSVNPGFSAQDFIPSAIYKIWDLYNLRKKNNYRYLIEVDGGVTAANAKALKEAGTDILVSASYIFSSHDYSQAISALRNA
>NC_020449.1|WP_044279078.1|1859078_1859393_-|DUF721-domain-containing-protein
MAFSSFSRLSENLIYRLGGDKYRSFIHIYLSWSKIVGEILASQSHPVKVENGVLFVAVQNNTWMQELILIKDDIIAKYKSIYEEEIADIVFLISSPKRKCKRRK
>NC_020449.1|WP_015425301.1|1859462_1860038_-|hypothetical-protein
MSDLWFKIKQIITLVVFVAVLSLLGMISGRPIMIVAYGVFFLVVVAIMFYMTRKRQRHFEKVKGSSQLFRKIFGILLMILALITPPVIILRTNLITLPETVKSGAALGIVSGITVLFIVLTLLAVYFINYRGSQVSNRVIGYILYFIAAIVPGFLMSRVEKTTIGIGSVYYVALIVLILSYSGYGLLSNKE
>NC_020449.1|WP_015425302.1|1860056_1860503_-|50S-ribosomal-protein-L9
MKVIMLKTIEKVGNQGDVVNVKRGYARNYLVPRGFALYATPANLKNLNAIKNKLADEEQKLTEELKNLAEKIDSTKLVFMRKVDEHGTMFGSVSELDIIRSLEEQGINIQKNDLEMDKHFKELGEFQVPIHLRKDIVCTLNISIEPEQ
>NC_020449.1|WP_015425303.1|1860499_1861336_-|hypothetical-protein
MPIYPVIFGALSLLSPFLGLILYMLYVAKTAELNLTKPLQAFIMFIPIPVLLLIFDPQTSTRLMCLDAILAVGLPVLVFLMVLKHNHILSNSFLAAFLVMFAWGMLRYYLFKTYQDQLFEQGMQVVKDKMPALLNNDLLQQTLPFWKGIIPSIWVISQAIAWLIGFLLFEGRLQIPNRIENLRFPVYFNLLIIAVLPLYFFDQTKLLFYNLLLSLCIIPFFQGAGLVWQRLGMIFSNRIISGLFMLIIVLYANILLVLLGFGNMWFTKRNITPGGYTE
>NC_020449.1|WP_015425304.1|1861336_1861573_-|30S-ribosomal-protein-S18
MNTTDRKKKYTRKKYCRFCANKEIQIDYKNIDVLKPYISEVGKIEPARLTGTCAKHQRKLTTEIKRARQMALIPYVIE
>NC_020449.1|WP_044279079.1|1861582_1862026_-|single-stranded-DNA-binding-protein
MADLKVPRLNKCIFSGRIGNDVELKYTPKGTPVVRFVVACDRRYKDETEQWQTATSWIDCVAWRKWAEFIANQTHKGSAVIVEGRIETRNWTDQNNQNRKTTEVIVDVLHSLEWKPREEGVTPPNEEVPLPAEETLHHNTTTDDVPF
>NC_020449.1|WP_015425306.1|1862036_1862324_-|30S-ribosomal-protein-S6
MTKDYELMVILVPTLSADEANAINDSLMALVTENGGEIIKIDPWGKRMLAYPIKKFREGYYFVDYFRVDSLVIKKLKALFNINENIIRYLFVAKN
>NC_020449.1|WP_015425307.1|1862323_1862920_-|aminoacyl-tRNA-hydrolase
MKLIIGLGNPGKEFANNRHNLGFICLDRWALGRERNFAKGDVFDYIVLKRAVLIKPKTWMNRSGEAIKQALKQWIISEYMVIYDDIELPVAKIRIRQGGGDGGHNGIKSLLAVIPPEELKRIRIGIGRNNEIDPQNYVLSDILPEEWELLNPALDQAGKFIDLYIKYDFNAVLNEYSIWKKSCSGAESSGIVSPKEEK

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Crispr_ID: NC_020449_31

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_31

2003680-2003830

Unclear

Consensus_repeat	Method
GATAGCGATGGTGGCGTAAGCCCCTCGAAAAATGTAAGCCCCGACTTCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_31

>merge|NC_020449|31|2003680-2003830|CRISPRCasFinder
GATAGCGATGGTGGCGTAAGCCCCTCGAAAAATGTAAGCCCCGACTTCTTTTTTCTTTTCATCTTCCCATTTTCCAAAAGCCCCAAAGGGCGACACAAGGATAGCGATGGTGGCGTAAGCCCCTCGAAAAATGTAAGCCCCGACTTCTTTT

>NC_020449|31|28|2003680-2003830|CRISPRCasFinder
GATAGCGATGGTGGCGTAAGCCCCTCGAAAAATGTAAGCCCCGACTTCTTTT	TTCTTTTCATCTTCCCATTTTCCAAAAGCCCCAAAGGGCGACACAAG
GATAGCGATGGTGGCGTAAGCCCCTCGAAAAATGTAAGCCCCGACTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015425409.1\|2009023_2010577_+\|methylmalonyl-CoA-carboxyltransferase	unknown	unknown	gnl\|CDD\|130187
NC_020449.1\|WP_044279097.1\|1999133_2000063_-\|ribonuclease-HIII	unknown	unknown	gnl\|CDD\|260000
NC_020449.1\|WP_015425414.1\|2014120_2014942_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NC_020449.1\|WP_015425413.1\|2013618_2014155_+\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl\|CDD\|235365
NC_020449.1\|WP_015425398.1\|1997182_1997833_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279100.1\|2006151_2007048_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_020449.1\|WP_015425405.1\|2004347_2004947_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NC_020449.1\|WP_015425396.1\|1995339_1995948_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|184408
NC_020449.1\|WP_044279096.1\|1997822_1999046_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NC_020449.1\|WP_015425397.1\|1995961_1997041_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NC_020449.1\|WP_015425406.1\|2004946_2005897_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_020449.1\|WP_044279099.1\|2002817_2003303_-\|ferritin-family-protein	unknown	unknown	gnl\|CDD\|153104
NC_020449.1\|WP_015425403.1\|2002147_2002678_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381617
NC_020449.1\|WP_015425408.1\|2007051_2008509_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NC_020449.1\|WP_015425410.1\|2010596_2010785_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279098.1\|2001447_2002092_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425395.1\|1994274_1995327_-\|endonuclease	unknown	unknown	gnl\|CDD\|367881
NC_020449.1\|WP_015425412.1\|2013092_2013464_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_020449.1\|WP_015425401.1\|2000055_2001336_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NC_020449.1\|WP_015425411.1\|2010798_2012784_+\|pyruvate-carboxylase-subunit-B	unknown	unknown	gnl\|CDD\|236449

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015425409.1\|2009023_2010577_+\|methylmalonyl-CoA-carboxyltransferase	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
NC_020449.1\|WP_044279097.1\|1999133_2000063_-\|ribonuclease-HIII	gnl\|CDD\|260000	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like. This family includes type 2 RNases H from several bacteria, such as Bacillus subtilis, which have two different RNases, HII and HIII. RNases HIII are distinguished by having a large (70-90 residues) N-terminal extension of unknown function. In addition, the active site of RNase HIII differs from that of other RNases H; replacing the fourth residue (aspartate) of the acidic "DEDD" motif with a glutamate. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes; however, no prokaryotic genomes contain the combination of both RNase HI and HIII. This mutual exclusive gene inheritance might be the result of functional redundancy of RNase HI and HIII in prokaryotes. Ribonuclease (RNase) H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, archaeal RNase HII and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication or repair.	2.02431e-81
NC_020449.1\|WP_015425414.1\|2014120_2014942_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.29233e-77
NC_020449.1\|WP_015425413.1\|2013618_2014155_+\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.0803e-98
NC_020449.1\|WP_015425396.1\|1995339_1995948_-\|SIS-domain-containing-protein	gnl\|CDD\|184408	PRK13937, PRK13937, phosphoheptose isomerase; Provisional.	1.50726e-79
NC_020449.1\|WP_015425405.1\|2004347_2004947_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	7.89022e-48
NC_020449.1\|WP_044279100.1\|2006151_2007048_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.18274e-08
NC_020449.1\|WP_044279096.1\|1997822_1999046_-\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	5.67705e-34
NC_020449.1\|WP_015425397.1\|1995961_1997041_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	5.8997e-141
NC_020449.1\|WP_015425406.1\|2004946_2005897_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.81039e-16
NC_020449.1\|WP_044279099.1\|2002817_2003303_-\|ferritin-family-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	6.62835e-17
NC_020449.1\|WP_015425403.1\|2002147_2002678_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381617	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70. Uncharacterized lytic transglycosylase (LT) with a conserved sequence pattern suggesting similarity to the Slt70, a 70kda soluble lytic transglycosylase which also has an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	4.66215e-28
NC_020449.1\|WP_015425408.1\|2007051_2008509_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	8.21967e-143
NC_020449.1\|WP_015425395.1\|1994274_1995327_-\|endonuclease	gnl\|CDD\|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	2.31856e-38
NC_020449.1\|WP_015425412.1\|2013092_2013464_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	2.27328e-38
NC_020449.1\|WP_015425401.1\|2000055_2001336_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	7.50753e-134
NC_020449.1\|WP_015425411.1\|2010798_2012784_+\|pyruvate-carboxylase-subunit-B	gnl\|CDD\|236449	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.	0

>NC_020449.1|WP_044279099.1|2002817_2003303_-|ferritin-family-protein
MAIYSVNEVIEMAVQIERSGYAFYNEAAKRKDLDEKAKDFLIYLRDEELRHEKTFLSLRDEVDLQVLQLSVDWELIAEYLKTIVESRIFNSEFSAIQLATKAKDIKEIVENAITFEKDTLLYFHTLSDNINEPRTHNALRKIINEEVSHILKLSEMKKKLV
>NC_020449.1|WP_015425403.1|2002147_2002678_-|transglycosylase-SLT-domain-containing-protein
MAKGKHRKNKKRNNGRIISILLVLFILLILVYNPISLRLTTIGVAIYYGLNPIVFYRVIKTESSFRSFAISDAQAIGLGQIKESTAFYMHKDHKRGYLFLPVYNLKLAAKYLVYLKNRYNGNWSLTLAAYNWGESKVNRRLKGIEIEKDKDYRSLFRDIPETYSYVTKILYPKNKA
>NC_020449.1|WP_044279098.1|2001447_2002092_-|hypothetical-protein
MLRNQNGISVYTVLSIILFIALVFILAVPNFFNLDKEKNLEDCINNMKQIWVATTDYMRDTNADFNGDLSLLIKTPKKDDPKNTYLSSNLYCPETSHQKKEYLVYGKYIAEQIGTEIKHNYGIIILCPNLAQYPKHIIEKGFYENMEPTQLQNYMSEDIDYIDSETGLNGAKKVELINKYIEIWKTDPDAFAKRKANTTALRAILFPEKFGITE
>NC_020449.1|WP_015425401.1|2000055_2001336_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MLYNEFLEHIFKRYSGNVKLELNRMQGLLNDMGNPERKLNGFHIGGTNGKGSVCATLEALCRESGLNTALNTSPHLINYNERFRINGKEPSFETILNTFLRYENLFDKWEASFFEITTALAFSMFSEHNVDVSIIEVGLGGRLDATNLFIPDVAVITNIGLDHIKTLGGTLEIIAGEKAGIIKEGIPLVLGDIEESPRSIIEAVAKTKKVPVFRYKRDWQTSIRNDNLTGINFDYSFGNYEFPNLEANLMGEHQAINIGSALTAFILYAEKKKLPVAEEVIRKALQHISWKGRMQLLSQKPIIIIDGAHNVHGVKALMSTLEKIFPNRKVKFMVSILRDKDYKQMLSLICPKAEQIYVARNQSERAASVEDQVAVIEEYNIPYKTAPTVAEAYSLAVKECKEDDILIVCGSLFTVGEVLEIPKDNA
>NC_020449.1|WP_044279097.1|1999133_2000063_-|ribonuclease-HIII
MHKELENYLSHLLPELQKTGISIDEQIEIPYGVQLKVSRHNYKSILNIYYSQKKGISPVPTGNNNPLKKLLWDLCRLQEELKLDMPPMHTWNAWIGSDECGKGDYFGPLVVCAFAYKRDSENEFKNVGVKDSKKLNSEEIKRIAQYLYKNYANCIHCIVIKPVKYNELIAKFKAQKKNLNDLLAWLHSTAIIALQKNHPESQGVLVDQFSVSHKTKYALQEKQFPLPCIERTGAEIDPAVAAASIIARYQFLEAFEAMRKFYQLNFPQGANGNVIKYAQDFIKQYSEKRLGEVAKLHFKTTNQIENLPE
>NC_020449.1|WP_044279096.1|1997822_1999046_-|AAA-family-ATPase
MLKQITIKGFKGITDLTLNLDKINVLIGVNSSGKSTILQALDLLANCASRDVAEYLKDKNWKVSDIKSQISKSPFLSYKSIFEFEEKEQPFLLIWDIEFKLISATSVNLLEESISKVNSKWDKSLCNPKKMEKLYEKASPLYTYKDGIVNYETFPGQKIKTQESEFSLSLGSSGLKIIDFSAKKEILLLKEYLEHTTNFETLAAENMRRSSRGTTEDIGVGGKQLAAFIKQMTPKQRESYIEKVHSILSNMDSIDAFTKGTPGWVELFINEKFSSNAIKVRPYHISDGTLRILAFVALFYVKYDSGLLMLDEIENGLNPYITTKIVELLYEFTSQTRHQLLLTTHSSLMLDDFKPEDIIYVYRNQDGSIGAERVFNNKKIKEFLEYMNPGEIWINLTEKELLESDGN
>NC_020449.1|WP_015425398.1|1997182_1997833_-|hypothetical-protein
MAIKVIVCGEGPTDVGKKDCDTSEWIPGPAIAYIKNASTPKLQIDGIQKNKLPRIQKAKCKKGHSVKAERLCRYAILKSYKVAICYVDCDNNDFETIYQDITFGFSFYSNQVIGIPMIPKAMIESWLLADEKAFIKVFGKKPSKPPLPKKPESLWGKKEDPNSNYPKNVLKLIVSQFNNKPEDWRYALARNSNSKTLLLKCPESYGRFLCDMQKIE
>NC_020449.1|WP_015425397.1|1995961_1997041_-|adenosine-deaminase
MKIKMTKEFIKKLPKTDLHVHLDGSVRIETIIDLAKKYNIKLPTMDPAELRKLLVCGEQTTSLDDYLRAFPIVNLVLQNEEGLRRAAYELAEDASAENVRYMEVRYSPILHTDQGLKLTEISQAVIDGLKQGERDFGIKTGVIICGIRNMDPTTSLKLAELAVAFKNKGVIGFDLAGGEYKHPAKDHKEAFDLALHNNLNITIHAGEAYGPESIHQALHYCGTHRIGHGTRLVEDGDLLNYVNDHRIPLEICLTSNLHTKAVPDIRSHPIDFYIDYGLRVTINTDNRTISNTTVTDEYMLAINELGLDYPTVKYIILNGFKSAFLPYKERVRLINQILKEIDEIEEQELKTRVKVKENL
>NC_020449.1|WP_015425396.1|1995339_1995948_-|SIS-domain-containing-protein
MNSIIIETFQETQELISQVLNRENILPQIEAMAKQMADVLLNKGKLIACGNGGSMCDAIHFAEELSGRFNKDRQALPAIALSDPGYLSCVANDYGWDNVFARGVDAFALKGDLILGISTSGNSTNIIKALIAAKKKECFTASLLGKEGGKLKGFCDYEIIVPSNNTARIQEIHGIIIHLLIELIEKELFTSQEENPQAPLFC
>NC_020449.1|WP_015425395.1|1994274_1995327_-|endonuclease
MFKNKIKSLLLLLLFSVAFYLNADYYDSVINLTGDDLFYGLRNLISNNTNTSYDASKVVLYQTLDNFNGYVTCVYTGQEYYVGFDYTGSTNPNTEHTYAQSWFNGTDTTKKKSDLHHLFITNSVVNSSRGNYPFDVVANHNTANVYYTYTPWQSYRGYNAQNRMVFEPADEFKGNIARALLYFYTRYSGESLIQQNVDMLPTLLIWHNFDPPDAAELTRNTGVFNYQNNRNPYIDHPEFVAKIWGGNDVEDAVLPVVPDLTINAVYPNPFTSELNISITTQKSALLTTSVYNIKGQLIYSESSVLIAGENKVFWKGQDNKGQNTPAGIYLIKVQSADKQAVTKVLKVFEG
>NC_020449.1|WP_015425405.1|2004347_2004947_+|molybdopterin-dependent-oxidoreductase
MHKLTKLNTPIFWAEGHPGSLKRENWQIEVSGSCEKPGIFTWENLLALPQKEVKGRLTSVTRWSVEGFWQGIPLSEILQAVAVKENCRYIRFWSINKIYDTSIPIEIANKEKSLLAYSFDGELLTEDYGGPIRAFIPYLWGYKSAKSVVAIELMDYYVPGFWEKRGYTDSGEIEAGPCRDLNDGGKIKYIPDGEVLKFN
>NC_020449.1|WP_015425406.1|2004946_2005897_+|DMT-family-transporter
MKLWITYLKAVLAMLFWSATFVWFKIAYKTYLPYEVTFLRLLLATILLFPFVWLTGKREKVPKKDLLHLMLVSFCEPFMYFIGEANGMRIVSSTLGSLIISTIPIFSAVGAWLILREKLPLLVVLGLILSTSGVAVMSLGSDDFSATFKGILLLLIAVFSGVFYGITVRNLTLRYNPFTIVAWQNFFGMLYFLPLFLVVDGKHFFSVQHSLEGLATIAAMSIFASVIAFILYTGVIRDLGVAKSNIFTNLIPVFTVALAYIILGDKLGLPGWIGLILAIIGLFLSQYPDWQKYRKQEKTELLPVVENAETNISDEL
>NC_020449.1|WP_044279100.1|2006151_2007048_-|flippase-like-domain-containing-protein
MDLSGINNFRKSRAGKIILYFLKLGLSIFILWMIFRKVNFVSALKDIISLPLGIVLLLLVISFIRHTLQFHNWYFSLQINTLFKAGKKEVISSYLIGQTLRFAIPGGTASFAKIFYVPNSSKISSFWSSIAEKSFMTWTTWFFALLAGMLYYRQSPLWIWIILLLILIFLPFLVKLILRGSKNFSSLQAPYSAQFPKIISVQVLSNLLCFVQYWLILNCFLPINFWQSWIRMALTQFSNTIPITISGLGLREGFAIHFLAGAGFTAEQAVSVSLTLFFIHDVLPALIGIFYLLKSKKV
>NC_020449.1|WP_015425408.1|2007051_2008509_-|NADP-dependent-malic-enzyme
MKELSADLSNLAEVFSALFPPEKKSSAQTFFLKQLSLKMHSYYQGKMQTLPKAGIWGFNWFNVWYTPGVSSVSTAIRDNIAKSYELTNRRNLVAVVSDSTRVLGDGDCGIAGGLGVMEGKAMLMKYLGACDAISLCIDSRAENGKPQAQKIIDFVKMLQPSVGAVNLEDISQPNCYLVLDELRETCSIPVWHDDAQGTACVTLAGLINALKLADKEIDNIKCVLYGAGASNTTIAGFLLQSGLNPERLIIFDSKGSLHPGREDLKSNPDKFRQWSLAQISNPKCLEGIENALQDADVLIALSTPGPGTIKQEWISKMAKKSIVFTCANPVPEIYPYNAQKAGAFIVATGRGDFPNQINNSCGFPGILKGVLTVQASKITDTMAIAAAHSLAEYAEKRGIHPENIVPQMDEEDVFAYEAAAVARQAITEGLAGLKFTYEEVFKQVQKEINATRALCQEMMENGYIAPPPRNLIAETLQQTIVRFQN
>NC_020449.1|WP_015425409.1|2009023_2010577_+|methylmalonyl-CoA-carboxyltransferase
MQSTKEAIQGLLEKEEKILQMGGEKAIAKQKQGGKLTARERLDLLFDEGTFRELDMFVSHRCDNFGMEKIEIPSDGVITGHGLVDGRPVFAFSQDFTSRGGSLGEMHAAKICKIMDMALKSGVPLIGIQDSGGARIQEGVDALKGYGDIFFRNSRASGVIPQITAIMGPCAGGAVYSPAMTDFVFMVKNTSFMFITGPDVIRAVTGEETTQEDLGGAMAHNSKSGNAHFACENDADAIQKIKVLLSYLPSNNMEEPPRIQNTDDPWRLCPELDSIIPDDPKMSYDMRDVIHSVVDNGIFFEPHYYYAQNVIIGFARLNGRTIGIVASQPTILAGCLDIDASDKATRFVRFCDAFNIPLVTFVDVPGYLPGTHQEWNGIIRHGAKLLWCYSEATVPKLTVVTRKDYGGSYIAMSSRHLGADMVFAWPMAEIAVMGAQGAANIIFRKEIAAAEDQEAKRQEMIQIYEQEFNNPYVAASRGYVDAVIVPAETRKRLIDALEILCTKSESLPPKKHGNIPV
>NC_020449.1|WP_015425410.1|2010596_2010785_+|hypothetical-protein
MKDNKEIAAIGAVIALIQSEETYITYKEPVRGIPSQPYTAYGRELTMHYRDLTQRRIIKRCR
>NC_020449.1|WP_015425411.1|2010798_2012784_+|pyruvate-carboxylase-subunit-B
MDKHSCVEMTAMHYELDRPKAENPVKVQDLTFRDGHQSLFATRGRTEDMLNVAELMDQVGFYSMEIWGGATFDTMHRYLGEDPWERIRVLKKHLTKTPLSMLLRGQNLVGYQNYADDVVEAFVQRCCDNGIDIFRVFDALNDFRNFITAVKIIKKNNKLFEGAICFSLTEQRMGGDIYNIEYYVAKAKQLEEMGADTICIKDMAGLIAPYDAYELIKALKENVKVPVHLHTHFTSGMGDLALFKAIEAGVDIIDTCVAPYAYRTSHPAIEPLVISLLGTNRDTGFDIKLLDKIGKEMEKDIPKYLEFADTTKFSIIDTDVIIHQTPGGMLSNLVNQLRQMDALDKLEDVFKEIPKVRKDLGQIPLVTPTSQIVGIQAVNNALFDSYEGEYSRITEQVKDLCYGLYGKTTLPINPEVQKKALKGYPRGETPITCRPGDVIPPAMEQVHKDCEGLAKNIDDELIVALYNITGKRFLRIKYGLEPMPEEMKPKTLNDVKKEQELIAKAKAGKLIEKPEPKDKPQDMRQFDVFVDNTYYLVEVSEKGGTPKIVNSRPAPVISETIIKPANNPNPQVKPSNPAPEPKPAPVVNSEGGTKITAPMPGMFIRYEKKPGDPVKQGETVLVLEAMKMYNNIPSPVDGVLVEAPFTGGANVAKGDVLALIK
>NC_020449.1|WP_015425412.1|2013092_2013464_+|four-helix-bundle-protein
MYNYRDMQVWKVSMQLFVDIHKRTLEFPKFEQYELAAHLRRTALSIPSNISEGAGRKSTLDFLRFLDIANGSLSEFETQLEAAFMLGYLPEYNDYLKRIAHLRSLISGLVRSLTQKIKSADIK
>NC_020449.1|WP_015425413.1|2013618_2014155_+|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MLVKSQIMDKDQMERSLQRMAHEIIEQNRGLEKIRLVGIRSRGVPLAERLSSYLKLISNQEVPVGILDITLYRDDLSTISHQPVIKGSAIDFDIEDAVVVLVDDVLYTGRTVRAAIDALMDFGRPKQIQLAVLIDRGHRELPIKADYVGKNVPTSKEEIIKVSLEETDGEDSVKIVLV
>NC_020449.1|WP_015425414.1|2014120_2014942_+|orotidine-5'-phosphate-decarboxylase
MAKIASKSFWYKYQERYQAIKSVLCVGLDSDFSQLPEGVKNSENPIWEFNKTIIEATLDYACAYKPNLAFYLADGIRGLDALYKTVEFIPDNLPVILDCKIGDIGNTMNAYLSAFFAELKVDAITLNPLMGSDVMQPVQDRNAFAFVLCLTSNPSAADFLQEGMAEKIANWLQDYPKENFGAVIGATQRANIKTMRNLLTGRILLIPGIGAQGGDLKTVLQEAKDSSETPNILVNSSRSIIFASKGKDFATAAREEARKLTQEMKNALNRGSN

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Crispr_ID: NC_020449_32

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_32

2074426-2074545

Orphan

Consensus_repeat	Method
TCGCCCTGCGGGCTTTGAAAAAATCTCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_32

>merge|NC_020449|32|2074426-2074545|CRISPRCasFinder
TCGCCCTGCGGGCTTTGAAAAAATCTCAACTTCCTCAACCCTCTCAACCTTTTTCAACGAGGGGCTTACGCACCCATCGCTATCATTGTTTCGCCCTGCGGGCTTTGAAAAAATCTCAAC

>NC_020449|32|29|2074426-2074545|CRISPRCasFinder
TCGCCCTGCGGGCTTTGAAAAAATCTCAAC	TTCCTCAACCCTCTCAACCTTTTTCAACGAGGGGCTTACGCACCCATCGCTATCATTGTT
TCGCCCTGCGGGCTTTGAAAAAATCTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015425462.1\|2081726_2082440_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|133459
NC_020449.1\|WP_018197737.1\|2075652_2076207_-\|LPS-export-ABC-transporter-periplasmic-protein-LptC	unknown	unknown	gnl\|CDD\|275202
NC_020449.1\|WP_015425444.1\|2063216_2064569_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179193
NC_020449.1\|WP_044279109.1\|2076748_2077543_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_020449.1\|WP_173307548.1\|2082435_2083572_+\|sodium-ion-translocating-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|377182
NC_020449.1\|WP_015425453.1\|2072319_2073081_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_018197744.1\|2066303_2066567_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NC_020449.1\|WP_015425455.1\|2074579_2075659_-\|signal-peptide	unknown	unknown	gnl\|CDD\|372475
NC_020449.1\|WP_015425447.1\|2066535_2067525_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|273214
NC_020449.1\|WP_157860027.1\|2080883_2081723_+\|OadG-family-protein	unknown	unknown	gnl\|CDD\|377277
NC_020449.1\|WP_015425448.1\|2067741_2068278_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NC_020449.1\|WP_015425450.1\|2069700_2071158_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NC_020449.1\|WP_015425460.1\|2079322_2080873_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|130187
NC_020449.1\|WP_015425454.1\|2073074_2074040_-\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_015425464.1\|2083609_2084530_+\|3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240651
NC_020449.1\|WP_015425457.1\|2076166_2076727_-\|HAD-IIIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319769
NC_020449.1\|WP_026307694.1\|2071154_2071904_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NC_020449.1\|WP_015425459.1\|2077574_2078741_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|350837
NC_020449.1\|WP_015425449.1\|2068293_2069700_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NC_020449.1\|WP_015425445.1\|2064569_2066303_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_015425462.1\|2081726_2082440_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|133459	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.	2.40689e-25
NC_020449.1\|WP_018197737.1\|2075652_2076207_-\|LPS-export-ABC-transporter-periplasmic-protein-LptC	gnl\|CDD\|275202	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC. Members of this family are LptC, a periplasmic protein tethered to the inner membrane in the lipopolysaccharide (LPS)exporter transenvelope complex (Lpt), which is responsible for conducting LPS to the outer leaflet of the outer membrane in most Gram-negative bacteria. LptC is homologous to LptA, another member of the transenvelope complex. Genes lptC and lptA are often adjacent. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.53412e-15
NC_020449.1\|WP_015425444.1\|2063216_2064569_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|179193	PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional.	0
NC_020449.1\|WP_173307548.1\|2082435_2083572_+\|sodium-ion-translocating-decarboxylase-subunit-beta	gnl\|CDD\|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	0
NC_020449.1\|WP_044279109.1\|2076748_2077543_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	1.87748e-162
NC_020449.1\|WP_018197744.1\|2066303_2066567_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	2.36165e-32
NC_020449.1\|WP_015425455.1\|2074579_2075659_-\|signal-peptide	gnl\|CDD\|372475	pfam13100, OstA_2, OstA-like protein. This is a family of OstA-like proteins that are related to pfam03968.	2.29522e-05
NC_020449.1\|WP_015425447.1\|2066535_2067525_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|273214	TIGR00679, HPr_kinase/phosphorylase, Hpr(Ser) kinase/phosphatase. Members of this family are the bifunctional enzyme, HPr kinase/phosphatase. All members of the seed alignment (n=57) have a gene tightly clustered with a gene for the phospocarrier protein HPr, its target. [Regulatory functions, Protein interactions, Signal transduction, PTS].	2.57365e-141
NC_020449.1\|WP_157860027.1\|2080883_2081723_+\|OadG-family-protein	gnl\|CDD\|377277	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.	1.19478e-09
NC_020449.1\|WP_015425448.1\|2067741_2068278_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	2.09778e-24
NC_020449.1\|WP_015425450.1\|2069700_2071158_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	1.28987e-112
NC_020449.1\|WP_015425460.1\|2079322_2080873_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
NC_020449.1\|WP_015425464.1\|2083609_2084530_+\|3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240651	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	4.16413e-115
NC_020449.1\|WP_015425457.1\|2076166_2076727_-\|HAD-IIIA-family-hydrolase	gnl\|CDD\|319769	cd01630, HAD_KDO-like, haloacid dehalogenase-like (HAD) hydrolase, similar to Escherichia coli 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) phosphatase KdsC, and rainbow trout N-acylneuraminate cytidylyltransferase. KDO 8-P phosphatase catalyzes the hydrolysis of KDO 8-P to KDO (3-deoxy-D-manno-octulosonate) and inorganic phosphate and is the last enzyme in the KDO biosynthetic pathway. KDO is an 8-carbon sugar that links the lipid A and polysaccharide moieties of the lipopolysaccharide region in Gram-negative bacteria. An interruption in KDO biosynthesis leads to the accumulation of lipid A precursors and subsequent arrest in cell growth. The KDO biosynthesis pathway involves five sequential enzymatic reactions. This family also includes rainbow trout CMP-sialic acid synthetase which effectively converts both deaminoneuraminic acid (KDN, 2-keto-3-deoxy-D-glycero-D-galacto-nononic acid) and N-acetylneuraminic acid (Neu5Ac) to CMP-KDN and CMP-Neu5Ac, respectively. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.51787e-74
NC_020449.1\|WP_026307694.1\|2071154_2071904_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	1.0617e-134
NC_020449.1\|WP_015425459.1\|2077574_2078741_-\|methionine-adenosyltransferase	gnl\|CDD\|350837	cd18079, S-AdoMet_synt, S-adenosylmethionine synthetase. S-adenosylmethionine synthetase (EC 2.5.1.6), also known as methionine adenosyltransferase, catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP in two steps, the formation of AdoMet and hydrolysis of the tripolyphosphate, which occurs prior to release of the product from the enzyme, which consists of three structural domains that have a similar alpha+beta fold.	0
NC_020449.1\|WP_015425449.1\|2068293_2069700_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	9.59683e-177
NC_020449.1\|WP_015425445.1\|2064569_2066303_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0

>NC_020449.1|WP_015425454.1|2073074_2074040_-|hypothetical-protein
MKNIALKTKEYLENMLDVKVEIRHNNIGYKLPHFFSEKYIFYDLTLNGKHYLLIEGKDMLTAKVVKLHSHILENRFGIKVIYLSKSINPSLRRAFIKERISFIIPDNQIYLPHLGILFNESCSQEVKKRNRFSSLTQVVIIRTLLEKEYQLSTVSMYAKKYYLNVMYVSRAFRELTEYELITRDECGKEKPIHWLFTGKELWEKAQPYFFNPINKVIWFRLNRQVPFCLAGFSALSKYSMLTPENYESYATTRIIAKKFPDLVEIPYKEEQTNELQLWRYNPKLITSEDYVDPLSLFLCLKEEPDERVQMALEEMMEKIKW
>NC_020449.1|WP_015425453.1|2072319_2073081_-|hypothetical-protein
MVRGLTTFREHFIDYKEQYVLIGGAASSEILSQSGLTFRATRDLDIVLIVEALSAEFGRAFWEFIEKGNYRSIFQNKEEKKCYRFNNPVNAIYPEQIELFSRIPETIDFKGYGRITPIPIDNELSSLSAIILDDNYYSLIKNGLMDINGLSCLRPAYIIILKAKAYLNMTKSMAEGENITSQKLNKHKNDVFRLFPVLEPNEIIELPLSVKNDLRDFIFLIENDTTINIKNLGIRRIGLKEVMERLKIIFNLD
>NC_020449.1|WP_026307694.1|2071154_2071904_-|LPS-export-ABC-transporter-ATP-binding-protein
MEKHKIRAENLVKIYGKRAVVNDLSLEMSQGEVVGILGPNGAGKTTTFYMIIGLAKPNNGKVFYDEMDISHKPMYKRARLGLGYLAQAPSIFAKLTVEENILAILQTLKISRKEQKNRLAEALEELGLSPLAKQKAYTLSGGERRKLEITRALVTNPTFLFMDEPFAGIDPIAVADIQDIIAKLRNKDIGIMVTDHNVLETLKIVNRAYIIYEGKIIVSGSSLELINDEKAKELYLGERFLESPFEQRL
>NC_020449.1|WP_015425450.1|2069700_2071158_-|RNA-polymerase-factor-sigma-54
MSAMEQYLSLKQKQELALKPKMLQSLKMLALPILELESYIKQELVNNPLLELREEKDEDDIDESNFEQSTPESSTPIEESDMSENHLETLAEAEELTEILDTWNEYHSSYEGWSSDSETDHTEALIRYEENGKEKFLEQLFPLELPENEIDFITDIVDSCDSYGFLPKGFNIVNLAKKYLITAERAEGLHNIILSLSPKGISARNITECLMAQLTEEQKQNRILVGLVSEHFENLIHRRYQKIASAYGVSEETILLAKEQISKLDPKPGLRILSTSAVYVFPDVTMKLIDGKYEIIINDHITPNIIISPRYRKMINRGYFDKETMQYVRERINSAKFLIKSIYMRMRTLERVSLSIINHQYDFFYLGTGQMKPLTYAVIARDLGVNESTISRVVKHKYAETPYGIYAFKDFFTSTAGFDDDYQSVSRQKVKTHLIRLIETEDKKKPYSDQELVELLKAEGLNISRRIITKYRDELGILNSHLRRQ
>NC_020449.1|WP_015425449.1|2068293_2069700_-|dihydrolipoyl-dehydrogenase
MQHCQVIIIGGGPGGYESAIRLSQYGISSLLMEKERLGGLCLNWGCIPTKALVKSAELYSEILNADNFGLPKPEITLQYNKVWQRKNAVVEQLTSGIEFLFSKHDIPVIKATAVSVTKEKGNYIVTTLEGESYSSEYVILATGSETKELPGIIIDEKDILSSTGILKMQELPKELAIIGGGVIGCEFASIFSAFGVQVTIIEFLPHLIATEEEEISKRLAMQFKKNGVKVITNTGVQEIIKKDKHLELKLNNNTTLTADKVLLSVGRKPVNNLTWKGININEEKGAIVINDFMQTSCDKIYAIGDVTGKMQLAHTASKQGLIAAQHIASRFCPEKCFAPQEPLNYNNIPRCIFTHPEIASVGYTQKDAEEIFGDVRVGKFPFAANGKAVAMGNINGFVKTIARKDTSELVGMHIMGPNAAELIAQGTIMIVNKNKAEDIDSFVFAHPTLSEAIMEAMEDLQSKSIHKI
>NC_020449.1|WP_015425448.1|2067741_2068278_-|ribosome-associated-translation-inhibitor-RaiA
MQITITARHFELTKAIRDYVETACSKLNKYFDQIITMHAVLALENSRNICELSLHAAKFSLQSEAEEMDMYLAIDNAVEKMEGQIKKLKDRITDHQKRALKQQFETYSYATDFQLDAKNHSRKTIKTKKVVTESLSLSEALEKLEASKEDFLIFKNIESDKINVLVTKDHELYKLLEP
>NC_020449.1|WP_015425447.1|2066535_2067525_-|HPr(Ser)-kinase/phosphatase
MKEITVNDFFDAKKKDLALSLITEPETLNKKIGSPHINRPGLALAGYMEIFAADRIQILGETEVRYLQSLPEEVLISRIRDMFKMDIPCIIVTKGLTLPPVIEYLANELNIALLSSRLSTINLIDNLSRYLREIFVLEKTIHATLVDVFGLGILITGKSGIGKSECALDLVHRGHSLVGDDLITLRYIDDQLIGKAGRDIGHFMEIRGVGFVNAERVFGIAHTRKQKNIDLQIELMPWQENMDYERIGLVNNYAEHLGVKIPIIYLPVSPGKNVSVIVEVAAMNVILKSVGYDAAEDFNRKINDEIRKKTMQKNFEGKGDETGRSDSNQ
>NC_020449.1|WP_018197744.1|2066303_2066567_-|HPr-family-phosphocarrier-protein
MKQVEVTVTNKLGLHARPSALLVKAATKYRSEFFIEKEGMRVNGKSIMGVMMLAAECGSKLQLIANGVDEDYLLAEIKEMIENGFGE
>NC_020449.1|WP_015425445.1|2064569_2066303_-|phosphoenolpyruvate--protein-phosphotransferase
MQKLLGTALNSGIFIGRAIHISLPEPEIENGNIKPEDIPREIDRLQNSLSAVEEEINQELHSSNLPPNEAEIISTQREILRDPEIYKQLLTAIQNKLYFATQAVAECFANIINHFETLKVETFAVRAADYRDVQMRLLNALSGVKNAFIRKLEKDQIPVLQEIVPSLVSKLAREGIKAYLVAKGSYNSHSSILSRALGLIAVANIPDLLEAVKDDDLLIVDGYSGLLFINPDEETLDFYKQKTKQEQRKQEQLRKLQFSASKTATGIKIKLLTNIGVLDELEAIKNLSCEGIGLFRTEFLYLGKQSLPSEEEQFTIYKELAERMNPLPVTIRTFDLGGDKLAPLSSEKQEENPYLGNRGIRFSLSYPDIFSTQVRAILRASAFGNVQIMFPMIIDAEDFRKAKRFVQNCQQELSAQGIACKPKIPLGAMIEIPSAALCSEELARECDFLSIGTNDLVQYALAADRNNERVSSYYIQHHPAVLGLIKQTVKSAEKYQTPLSVCGEMASNPQYIPLLIGMGITELSVNPGSFLVAKSIIRKCDAHLFALTEDLNFATSLSAVEHLIEYDLKPYYQNREE
>NC_020449.1|WP_015425444.1|2063216_2064569_-|glucose-6-phosphate-isomerase
MLKYEYHNLLASKHIRSNLPKEKVLEWIDQVKNAHREIMAEHNANLLGFYDLPDCSTKHIDDFIANLNPVFDTMLVLGIGGSALGNKALYSALKTEAELPRKLFVYDNVDPVFLYEILSQINLEKTLVNVITKSGTTAETMAGYMIVADIFKRKFPKDYQKRIIITTDKEKGFLRQVINQEGYTGFTVPDNVGGRFSVLSDVGLLSSAFTGIDIKALLKGAKDMREICWNPNIWENPAYLNGLIHFLYYRQGKNISVMMPYSNSLYDLADWYRQLWAESLGKRKDIKGREIYVGQTPVKALGTTDQHSQVQLYTEGPNDKVFTFLTVEYFKHDYTIPNLHPDREEVNYLGGKKLSELLNAERFATEIALSQAMRPNANIVFPQIDAYHLGQFIMLYEIQTVFTGKLLCINPLDQPGVEAGKIATYALMNKKGYDQERTEIEQYKKDRGLT
>NC_020449.1|WP_015425455.1|2074579_2075659_-|signal-peptide
MVKKGFVFFLLFLLLLPLFGKKKGEEEFRLIHSDKLFMTKMENEQALELNGNVHFFYGEVEFLCRNALILDKQKIARLSGNVIVKNDSLTLEADTLAYYRIPDLMNLGGRITATERTKEGIYRWIKSNFATYDKKNDILTTWSRVRGFDYQENARVKCGYAQWDRGKGYALLLDEPYITSGIEDTLAVAAEKMEYFEPERKLIATFNVQVERGEFHTTSDFLIYFLEEEKAIFTGEPKFISDFADAKATEFHLFMKERELVKAELIDSCHIDFAEERFKEKKNTVDADIVTMDFLDEQLRRFVAEGEVSYFYQQDETEKKDFMINSATGLYLQANFDEESKLQNMQMKTDIKGKYVFKK
>NC_020449.1|WP_018197737.1|2075652_2076207_-|LPS-export-ABC-transporter-periplasmic-protein-LptC
MKKRFWLIWIVSVSAFILLTSCQQDSLQSATGVLPRDLPDEISYNVKLTQLDNDRSEYYLEAEKIERFYDRRLLYAYKVTLTTYDKNNQISSVIKADTTIVDDARNLIFANGNAILTSPNGTVATQKMVWDRSVDEITAPLMVTITRAGDVMRGQNLRTNSQLSYVEMDAVSAEGIVKEKEIKW
>NC_020449.1|WP_015425457.1|2076166_2076727_-|HAD-IIIA-family-hydrolase
MYSKTTLVKPNKRVVPWNDLKLMVFDCDGVLTDGRFIYGSTNLELKHFHGHDGLGFKLLQKTDIMISVISGRSSEALERRCRDLNIPYLFQNITNKLKCLDNLLKDLKLSYTNVAYMGDDWNDVPVMRKVAFSAVPADAQPDVAKIADWVSEYRGGQGAARDLINYVLMRKGIYEKTVLAYLDSIG
>NC_020449.1|WP_044279109.1|2076748_2077543_-|3-deoxy-8-phosphooctulonate-synthase
MNKLYTELASSQNFFLIAGPCVIEEESIMFTVAETLKELCARKGIPFVFKSSYSKANRSSVNSFSGPGREEGLKILSKIKREFDVPVLTDVHECVEVASAAEVCDILQIPAFLSRQTELIRTAAVTGRIINIKKGQFMAPEDMKLAAEKASSTGNKQILLTERGTTFGYHNLVVDFRSFVTMHQFGYPVVYDVTHSLQRPSVGNYSGGNPEFALPMAKAAMATGMVKGLFIETHPEPHKAKSDSASMLPLAKMESLLESCLQVL
>NC_020449.1|WP_015425459.1|2077574_2078741_-|methionine-adenosyltransferase
MTAALHAINNTDRNGYVFTSESVSEGHPDKICDQISDAILDAYLKADPHSKVACETLATENRIVLSGEVSSRATIDIETIVRKTIKDIGYIHPDKGFDYNCSINNYLHKQEAALEENTGAGDQGLMFGYACSQTKNLMPVPIELAHKLLFNLASARKNGTIKHLLPDSKSQVSMRYLGRKAVDLKCLVISTHHDIVSETEFEELKEQIKQLVILPSIADIEDECKGYFDTKNCEIKINPLGPWQDGGPAFDTGLTGRKIIVDTYGGWAQHGGGAFSGKDASKVDRSAAYMARHIAKSIVASGLAGECLIQFSFVIGEHKPVSLMVDTFGSGKESDAEIERIIARNFDLTVEGIIDYLDLRKPIYFPTASYGHFGREGFSWERVKHISR
>NC_020449.1|WP_015425460.1|2079322_2080873_+|acyl-CoA-carboxylase-subunit-beta
MENQSPLEKLRAKRAAALLGGGEKRIAEQHAKGKLTARERIALLVDPDSFEEFDMFVTHRCTNFGLDKYIHPGDGVVTGCATINERMVYIFAQDFTVFGGSLSKTYADKICKIMDMALKNGCPVIGLNDSGGARIQEGVDALAGYAEIFWRNVMASGVIPQISAILGPCAGGAVYSPAITDFIVMEKSNSYMFVTGPKVVKTVLNETVTNEELGGAKVHTSKSGVAHFIANSEEEAMLTIKLLLSYLPSNNLEDPPYVPSADPITRNCDVLNNLVPENPNKPYDMLDVIYPIVDDGEFLQVMSNFAQNIIVGFGRMNGRSVGIVANQPKILAGVLDIDASIKGARFVRFCDSFNIPLVVLEDVPGFLPGTMQEHNGIIRNGAKLLYAFAEATVPKVTVIIRKAYGGAYCVLNSRHMRADIVYAWPSAEIAVMGPDGAVEVIFRKEAMAAENPKAVLQAREKEYREKFANPFIAAERGYIDDIIEPSETRFRLIRALEMLANKKDSIPPRKHGNIPL
>NC_020449.1|WP_157860027.1|2080883_2081723_+|OadG-family-protein
MRKIMSLTLFTLCVLSSWAQINSVEQTISDSLALAREKEIISEYGFRDTATLAEVANKLQIKDIDRWKSYLGLEPHNEKLDKMSLRKLGITPYKALLAQQYSIYGFTELSTLEEVATALKMPVKKIKQEIGLDKPNSPKWDSYSLQSLNLTPEDIKKIHREFEEKSLNFGLNVTLVGMLTVFTALLITSIIIGQLNHLNRPAKEKKADLKITPGGKVRSASATLNHNVIAALVATIFLHEQSLEEKRKIALTFKRTPTNQWRASAMLNMPNREMYLKRR
>NC_020449.1|WP_015425462.1|2081726_2082440_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MKTYKLLINNEHFEAKIVEYSPTHAKINLNGTEYLVQIEDDKIQSIPKLAAQEKAVPLAPAFSSSADLYSGEIRAPLPGVIVSILVSQGEEVKKGQAILIIEAMKMQSEIASPFDGKIDKIFVKERAPVKEGDLLMTITGAEIKVPPQSKPPQPSVEEPIGKKAVTEKILRAPLPGTIMDIKIQVNDYVHEGDVVLVLEAMKMESDIYSPRTGKISKIYVQKGDLVQDNDPLIEFED
>NC_020449.1|WP_173307548.1|2082435_2083572_+|sodium-ion-translocating-decarboxylase-subunit-beta
MSFMQELSQFIQTTGFLNVTWGNLVMIIFGMIFVYLGVAKEFEPLLLIPIGFGIIVGNMPGVAQQGLGVMNEGSVLNYLYFGVSKSIYPSLIFLGIGAMTDFSTLIANPRLILLGAAAQFGIFATFIGSILLGFNVLEAASIGIIGGADGPTSIFLASKLAPHLLGSIALAAYSYMALVPIIQPPIMKLLTTKKERLIRMKPLRVVSKKEKIIFPIVAFVVTTFISPGSVVLLAMLFLGNLLKESGVTERLANSARTVLIDVVTVLIGLTVGAKTTADVFLTPATLKIFLLGAFSFAAATAAGVLFAKIMNLFSKNKINPLIGNAGVSAVPASARVSQVVGHQYDKTNYLLMHAMAPNVAGVVGSAIAAGVLLGILGK
>NC_020449.1|WP_015425464.1|2083609_2084530_+|3-phosphoglycerate-dehydrogenase
MPKVLIATEKPFAADAVQKIKAELEKAGYEYSFLENYTDKSELHNALADAEAVIIRSDIMDEEAFNSAPKLKIVVRAGAGYDNIDLKAATAHNVVAMNTPGQNSNAVAELAIGMMIYIARNKFNGKSGTELSGKTLTLYGFGWVARYVAKIAKGIGMDVYAYDPYLQDDVMLKEGVKPLHSVEDVFKLGDYISLHIPATEETKKCVNWNLLSLVKEDAVLVNTARKEIIDEEALLKVFAEKKKFRYVSDVAPDNSAEILELYPDRVFFTPKKMGAQTSEANTNAGIAAAKQIIAFFEKGDTTYKVN

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Crispr_ID: NC_020449_33

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020449_33

2242767-2242903

Orphan

Consensus_repeat	Method
AGGGCGACACAATGATGTAGAGGGTGCGTAAGCCCCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020449_33

>merge|NC_020449|33|2242767-2242903|CRISPRCasFinder
AGGGCGACACAATGATGTAGAGGGTGCGTAAGCCCCTCGTTAAAATGTAAGCTCCGAGTATTTTTTACTTTTTTTCTTTATTTTTTAAAAAAGCCAGAAGGGCGACACAATGATGTAGAAGGTGCGTAAGCCCCTCG

>NC_020449|33|30|2242767-2242903|CRISPRCasFinder
AGGGCGACACAATGATGTAGAGGGTGCGTAAGCCCCTCG	TTAAAATGTAAGCTCCGAGTATTTTTTACTTTTTTTCTTTATTTTTTAAAAAAGCCAGA
AGGGCGACACAATGATGTAGAAGGTGCGTAAGCCCCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020449.1\|WP_015425588.1\|2239661_2239964_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NC_020449.1\|WP_157860030.1\|2234745_2235906_+\|hypothetical-protein	unknown	unknown	unknown
NC_020449.1\|WP_044279149.1\|2243887_2245810_+\|DUF4836-family-protein	unknown	unknown	gnl\|CDD\|374376
NC_020449.1\|WP_015425582.1\|2230910_2231990_+\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|273260
NC_020449.1\|WP_015425586.1\|2236347_2238063_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273226
NC_020449.1\|WP_015425587.1\|2238135_2239653_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NC_020449.1\|WP_044279145.1\|2239944_2242125_-\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NC_020449.1\|WP_044279275.1\|2233769_2234774_+\|DNA-methylase	unknown	unknown	gnl\|CDD\|183177
NC_020449.1\|WP_015425583.1\|2231986_2233534_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_020449.1\|WP_015425591.1\|2242991_2243666_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NC_020449.1\|WP_044279147.1\|2242114_2242573_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_020449.1\|WP_015425581.1\|2229675_2230911_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
NC_020449.1\|WP_044279145.1\|2239944_2242125_-\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NC_020449.1\|WP_015425588.1\|2239661_2239964_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	6.26985e-06
NC_020449.1\|WP_044279275.1\|2233769_2234774_+\|DNA-methylase	gnl\|CDD\|183177	PRK11524, PRK11524, adenine-specific DNA-methyltransferase.	2.71091e-44
NC_020449.1\|WP_044279149.1\|2243887_2245810_+\|DUF4836-family-protein	gnl\|CDD\|374376	pfam16120, DUF4836, Domain of unknown function (DUF4836). This family consists of several uncharacterized proteins around 520 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.	2.00143e-06
NC_020449.1\|WP_015425583.1\|2231986_2233534_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_020449.1\|WP_015425591.1\|2242991_2243666_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	1.22729e-06
NC_020449.1\|WP_015425582.1\|2230910_2231990_+\|YihY-family-inner-membrane-protein	gnl\|CDD\|273260	TIGR00765, tRNA_processing_ribonuclease_BN_RNase_BN., YihY family inner membrane protein. Initial identification of members of this protein family was based on characterization of the yihY gene product as ribonuclease BN in Escherichia coli. This identification has been withdrawn, as the group now finds the homolog in E. coli of RNase Z is the true ribonuclease BN rather than a strict functional equivalent of RNase Z. Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster. [Unknown function, General].	6.01053e-35
NC_020449.1\|WP_015425586.1\|2236347_2238063_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|273226	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.39966e-104
NC_020449.1\|WP_015425581.1\|2229675_2230911_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	4.01805e-48
NC_020449.1\|WP_044279147.1\|2242114_2242573_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	3.21728e-30
NC_020449.1\|WP_015425587.1\|2238135_2239653_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	4.23516e-156

>NC_020449.1|WP_044279147.1|2242114_2242573_-|transcriptional-repressor
MEEYAVIFNQYLINKGLKLTKPRRCILETVFNMHTHFNVEELYDKIRAKTNAISLATVYRTIPLLLDAGLVQHALRSEGRERYEHIFGHPKHIHWLCRNCGALMETDLNTLYPVLERQAQDLKFKPEEIELNIKGLCWKCNPIENETQSDEK
>NC_020449.1|WP_044279145.1|2239944_2242125_-|ferrous-iron-transport-protein-B
MRNRPVIALAGNPNVGKTCLFNALTGSHQTVGNWPGVTVEHKSGRCNYKGKIYEVVDLPGIYSLAGGSPDELVARNYILTEKPDIIINIVDASNLERNLYLTVQLMELGAPLIMCLSMIDIAEHNGIYIDTEHLSSHLGFAVFPLVLNKRIEVSPILDKVEEYLVQPPVPATIHYDEVVEKHLQNIWQIVLKSGLGEPETKIPQRKFSESASIAYDILIKSRWQALKLIEGDAELTSRLSDEDRALVEKEISAIAKHRGQEPTFVIADDRYGYIRGLIKDVVKRKRKSRLTFSDMVDKVVLNSVVGLPVFFIVMYLVFLVAVKLSQPCIKFIEFILSWLFIEQLGNLLSSLSFPQWLNYLLSEAIGGGIVTIGSFIPPIFFIYISLSILEDSGYMARAAFIADKFMRKIGLPGKAFIPLLVGFGCTVPAIMATRTLENPRDRVFASILTPFVSCGAKLPVYTFLVMLFFPLYADLVIFGLYLFGIIMGVLTGLLLKKTIFLSAPGDFVMELPAYHIPTINGIFMHTWHRLKSFLLRAGKTILLVIVLINILQGIQIPTGRDSEKTSILELGGKLITPVLQPMGIKSDNWQSSVALISGLFAKEAIVGTLQGLYQNSEGEISGDQLANNIKSSFGSNASILAYLVFILLYSPCAASLTMLFKEHGFKWMLFAFVYLTLLAWMVATLIYQILAFNVLSIFWFVVIGAIFTFIYITLRKIGSKYAFQTE
>NC_020449.1|WP_015425588.1|2239661_2239964_-|ferrous-iron-transport-protein-A
MLSRRNRVRIRGWSRKFSGRKRHGVCKAGQCLPLDQLPEGCNAVVIHNNNLKIIERGLYIGAQISMFRNDDDEPNVVVAVGDARYVLDRRIAKTIKVKIV
>NC_020449.1|WP_015425587.1|2238135_2239653_+|Rne/Rng-family-ribonuclease
MKKDSYNTEIIVNVHPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEIGLERTAFLHYSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKGPIGSKGARLTGQISIPGKYLVLFPNKDKIAVSRKIYSQAERSRIRNLLSGIKDPGYGLIVRTEAEGCEEDDFQTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDRLVIDDKNFAKRIISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGGNIKIEQTEALVAIDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFIDMVEEKYKNEVLEMLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNGSGRILSKDSVIMRIYRWLNRSDYFIKDKNLRIVVNPDLLNHIKQHNEDFTAYKEQIEFTSDPSIRIDQFKVYLLPGLEDITSKFS
>NC_020449.1|WP_015425586.1|2236347_2238063_+|signal-peptide-peptidase-SppA
MKSNKTVLWGCLIFVIALLAAFILGFIFTFGSHGAKSAKIPSNAWLYVNPSALIPDYNELEELRFVNVSSPSVQEICAKIKLAAKDERIKGILLQPQMIMTNYPALEEMSLAIGTFQKSGKPVLAFGENFTQGDYLLASCADKIYMEPSASAGLALQGVSANMLFYKEMLDKLGIKMHILQSGEYKGAGEPFSQTELSKGTRENIDAALYDIYNHLLSLVAQNRKLETTQVKDIFEKRDDFFLSAEKAKELKLIDYAMSRDEMLKSLGLEEDNFMKIANYSPTAKKKGDKIAVVYLNGNIAPVSGSNFGSQGIISEAKVKKIIKQIHQHKDIKAVVLRINSPGGSALESELIYQQLLKLKREYPLVVSMGGTAASGGYYISCAGDYLIADPGTLTGSIGVIGLIPEMAGLGKKIGVRSQTLKYGKFAGALSPLEHYDPALIESLKRSSTATYNEFKQRVMTARKISPENIEAVAEGRIFSAEDALTHKLIDEIGTLDKAIAKAAGLAKVTSYSSVNFPKKESYWEALRESDLLNLKERLQNNNDPATQLEKYLKQISATGEWLYLMPYTLE
>NC_020449.1|WP_157860030.1|2234745_2235906_+|hypothetical-protein
MKSNLTGIIKFIESKNAIKDKNKLTKLVSRRFKLIRDRSVYYNDEFAIRFCKSARPNLSNTILSLSNLRKVDDRPFIVCVVTPDKNYMYLANSTFLSKISHSSQLLRTNNIKGSFNGSDIKKEFNGYKNEPDNFAVLFDFHKQFSFEENLARLVEATNDIHPSGKNLELKDSEIKQILAAPLRAQSFVNSNEYIILKEELDTRVKQYRTEILIASLIENSNIRSAVIEYLIAGNDDSLRKEIIKSLNSGKGYQSLTSNKHSLGDYSREFANFLTETDVKTKIMVLDSNPKAYNIDKILEFLTKERTVFMFYFVGIDYLKNSVKTTLISMFQKDLCNSIFILSHWSGRNSRGVTQFDGKVIKKLILNPDNSIDIKKAQDLLKKLIEL
>NC_020449.1|WP_044279275.1|2233769_2234774_+|DNA-methylase
MKHTAPRNRTLTVSEEELKKMKTRFINLNKQCMLDAIKGNVICQDALECIQFLPEKSIDLLIIDPPYNMYKKFNEVTFNKKTIDEYAEWIDSWFSQIVSKISLTGSVYVCCDWQSSSAIETVLRKHLIVRNRITWERDKGRGAKTNWKNCSEDIWFATKSNKYVFNVDKVKIMRKVIAPYRDENGDPKDWKETNTGNYRLSHPSNFWTDITIPFWSMPENTDHPTQKPEKLLAKLILASSNEGDFVFDPFCGSGSTLVVAKKLNREFSGIEIDEYYCALTLKRLDLADIDKSIQGYSEGLFWERNSLTEQQKIKLSSRKQKGIDNYEIEFDWHH
>NC_020449.1|WP_015425583.1|2231986_2233534_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MNKYALISVADKTGIETLAMELERMGFTILSTSHTADYLKQFCQKVVLVSDLTGFPEILEGRVKTLHPVIYAGILADRNNPAHAKTLSELKIEHIDVIAVNLYPFASVCWKENATEQEIIENIDIGGPALIRAGAKNYKSVTVLVDPVDYANALELLKQNSILPEKFSSYLAQKAFAKTRDYDAEIAAYFASQGIEESITNELPAQLEFAISLKRKLRYGENPHQNGGFYAKVTSGWELIHGKELSFNNIMDIDSAFRAIRLFGKPTAIIIKHCNPCGIGSDETLAEAYRKAYETDTEAPFGGIVIVNRPLDLETATLINNIFTEIIIAPAFEPGVLEFLKKKKNRRLIRYEFSLLEKPLNPIEIKTLTSGYLAQDWDLVNESTENWKIVTNKQPAPEELEALIYAWKAVSVLKSNAIAIAKKDSVLGLGCGQTSRIDAVQLALWKAKKFGHDLTDSVCASDGFFPFRDCIDTLAKNGISAIIQPGGSKNDAECISACNELNIAMVFTGFRHFKH
>NC_020449.1|WP_015425582.1|2230910_2231990_+|YihY-family-inner-membrane-protein
MSKKKQNKGVFQKLLLWLYSYIKIVIVDLKKIYFSITVPQQRKKVFSNIWTFIKTFYQRFMGEGILKESASLTYITLLGFVPFINFLVLIAPDLPFLNLGDKLRELVVQNFIPSSANAIINFLDKLIMPKVGFNIFNFVILIVSSYSLFSVIRGTFDRILSMQLKSSQDTITQLVKFFGTIVFGLLIIVLLFSSSSIPIISRLLKSPVLQWIMVIVPFVLQFLAIMFLYMLLPSVRINRASLFRGAFWTTVIWVIGKSAFDFYIYNLTNYERLYGVMAVLPIFLLWIYINWAIILGGMVLVSEMENKKNGGFLTKEPHNAVRITMELFTNQKLNQRLEGILSKEELKKLADTLNEEEDK
>NC_020449.1|WP_015425581.1|2229675_2230911_+|ABC-transporter-permease
MAIPIAESLKLGFADIMMRKVRSIVTVIGIILGVMCIMVVLAIVNGMNESTMSWMEERGGLNKIEVEQNWFYDFSKGGDPSFSLKEIRYLQSLIPEAEAFNPTVQEWEAVINKGDIRYSTSLRGVMPDFVKVEQWDIAKGRFIKDLDIDQHSNVIVLGSTVAKEFFGNNDPLGQIISVGNQQFIVVGVMAERFMPTQGGQIGMGENALEYLNRRCFIPISTMISKVNPGSKISSIDIRAKSPEEAKELRRKVENIVLNLKNGKHLFQVTSAKEQLDTMQANAKIFEAIFVLIAVISLLVGGIVIMNIMLASIRERTREIGVRIAVGARRRDIFIQFLVQTVLITALGGILGILLGFAILDKVGSYLQIKVLASVQMIWVALLVSIGVGLIFGVGPAIRAARLDPVIALREE
>NC_020449.1|WP_015425591.1|2242991_2243666_-|PorT-family-protein
MKTNTFLLIMLLLLLAIGLQSQTLPEIQPGIIGGLNIANFSGDDIEDLDDAGFTINNRTLFHLGLTGTTNITSNIDLRGEIALSMNGSKWKVNLDFEDEDFDTVPFTITHNIYMIQVPVSLILNVPLPNSAVKPYLGAGFSASIPVSSGWEIRALGEEEEGDYTDEEFAELSSFVIGYQFNLGLDFNKILCEFRYERGLTPVFDNSYIDETFYSNFKFLVGFRF
>NC_020449.1|WP_044279149.1|2243887_2245810_+|DUF4836-family-protein
MNEELKEQVQDQVSEESSETEEQAPAVLGDTRKKKSVLIPVLIILFIILVIIAGYFYATYSPQIRHISKNALAVAKVDIPKLIKKSGAMKKGEIDEEIISALEDYNLEALVKDPRSTGLITAKPSYLFGEFDTKENIPYIFLVMPIANAEKVYSFAKNIALPNGKELPVSKKSGIYEMEINGISCMWAGKSMVMGMTDPDKDNDLSKKVKNYLTQDKSACITANKDFPSRGLRGHDITLWANLDGMAHIAQKGLKDAQGNVNRLISQRKRRDELIDYYYENNLYHFYRYWEFMDQIRVDNPENVFESVLLALVYDGKIPMDAVIDLPTNLYKTYFSFSADFDKGKLVSSVKFETTPERQKKLESVITDAVNVKDLYPYVPTEGLIMLSSVKTNYPKLYALSEKRIDKLTKSITDPEISKFMKHLNKLADGSGIIAINILDEKEDPFITLVASVKNNKGVQDLLKDMGREGMLSKDGKYYYLDDLIFFFEDNVMICTTNNNNYKKSNRGLEGTLAREMNKNPLNMTMDCAVLKDLKHVFSDEEEDALEMFAKLNANVKTKSGTPNELKVELTFSDKKHNCLKQVKDYLSDIDNFWDEITKEIMYSVSYRAERDDTYPEPDYEIPREVIEETGPIADFDTLY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_020449_2	2.1\|78951\|38\|NC_020449\|CRISPRCasFinder	78951-78988	38	NC_020449.1	424815-424852	1	0.974
NC_020449_3	3.5\|226536\|36\|NC_020449\|CRT	226536-226571	36	NC_020449.1	222696-222731	1	0.972
NC_020449_29	29.1\|1851834\|27\|NC_020449\|CRISPRCasFinder	1851834-1851860	27	NC_020449.1	1851793-1851819	1	0.963
NC_020449_29	29.1\|1851834\|27\|NC_020449\|CRISPRCasFinder	1851834-1851860	27	NC_020449.1	1851875-1851901	1	0.963
NC_020449_3	3.5\|226536\|36\|NC_020449\|CRT	226536-226571	36	NC_020449.1	220803-220838	2	0.944
NC_020449_3	3.5\|226536\|36\|NC_020449\|CRT	226536-226571	36	NC_020449.1	221001-221036	2	0.944

1. spacer 2.1|78951|38|NC_020449|CRISPRCasFinder matches to position: 424815-424852, mismatch: 1, identity: 0.974

taaaaaaaatggttgccatctcgacaggatatcgggat	CRISPR spacer
taaaaaaaatggttgccatctcgacagtatatcgggat	Protospacer
*************************** **********

2. spacer 3.5|226536|36|NC_020449|CRT matches to position: 222696-222731, mismatch: 1, identity: 0.972

gaataaagatccagcacttgcagattagtcagaccc	CRISPR spacer
gaataaagatccagcacttgcagattagtcaaaccc	Protospacer
*******************************.****

3. spacer 29.1|1851834|27|NC_020449|CRISPRCasFinder matches to position: 1851793-1851819, mismatch: 1, identity: 0.963

gctaccttgctattttcaccatctcac	CRISPR spacer
gctacctcgctattttcaccatctcac	Protospacer
*******.*******************

4. spacer 29.1|1851834|27|NC_020449|CRISPRCasFinder matches to position: 1851875-1851901, mismatch: 1, identity: 0.963

gctaccttgctattttcaccatctcac	CRISPR spacer
gctaccttgccattttcaccatctcac	Protospacer
**********.****************

5. spacer 3.5|226536|36|NC_020449|CRT matches to position: 220803-220838, mismatch: 2, identity: 0.944

gaataaagatccagcacttgcagattagtcagaccc	CRISPR spacer
gaataaagattcagcacttgcagattagtcaaaccc	Protospacer
**********.********************.****

6. spacer 3.5|226536|36|NC_020449|CRT matches to position: 221001-221036, mismatch: 2, identity: 0.944

gaataaagatccagcacttgcagattagtcagaccc	CRISPR spacer
gaataaagatccagctcttgcagattagtcaaaccc	Protospacer
*************** ***************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_020449_19	19.2\|1324038\|26\|NC_020449\|CRT	1324038-1324063	26	NZ_CP045276	Bacillus megaterium strain FDU301 plasmid pFDU301D, complete sequence	26495-26520	4	0.846
NC_020449_29	29.1\|1851834\|27\|NC_020449\|CRISPRCasFinder	1851834-1851860	27	NZ_CP020004	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed2, complete sequence	5863-5889	5	0.815
NC_020449_29	29.1\|1851834\|27\|NC_020449\|CRISPRCasFinder	1851834-1851860	27	NC_048762	Bacillus phage vB_BtS_B83, complete genome	38148-38174	5	0.815
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_CP029854	Salmonella enterica subsp. enterica serovar Typhi strain 343077_281186 plasmid pK43, complete sequence	42357-42387	6	0.806
NC_020449_20	20.1\|1389401\|27\|NC_020449\|CRISPRCasFinder	1389401-1389427	27	MN694051	Marine virus AFVG_250M33, complete genome	31497-31523	6	0.778
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_LR594693	Variovorax sp. WDL1 plasmid 5	8787-8821	6	0.829
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_LR594677	Variovorax sp. PBS-H4 plasmid 3	8718-8752	6	0.829
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	53351-53385	6	0.829
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP044977	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence	55899-55933	6	0.829
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	124974-125008	6	0.829
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	54932-54962	7	0.774
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_CP041128	Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence	22639-22669	7	0.774
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_AP019010	Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence	69059-69089	7	0.774
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	33735-33765	7	0.774
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_CP003425	Serratia sp. SCBI plasmid SCBI_Pl, complete sequence	40389-40419	7	0.774
NC_020449_22	22.8\|1487170\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1487170-1487205	36	NZ_CP018621	Paenibacillus xylanexedens strain PAMC 22703 plasmid unnamed, complete sequence	5305-5340	7	0.806
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_LR594693	Variovorax sp. WDL1 plasmid 5	8793-8827	7	0.8
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_LR594677	Variovorax sp. PBS-H4 plasmid 3	8724-8758	7	0.8
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	53345-53379	7	0.8
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP044977	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence	55893-55927	7	0.8
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	110765-110799	7	0.8
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	110771-110805	7	0.8
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP045692	Klebsiella pneumoniae strain TK421 plasmid pTK421_2, complete sequence	100154-100188	7	0.8
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NC_018990	Borrelia burgdorferi 297 plasmid 297_lp28-3, complete sequence	12615-12645	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NC_017405	Borreliella burgdorferi JD1 plasmid JD1 lp28-3, complete sequence	14593-14623	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NZ_CP031402	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-3, complete sequence	13959-13989	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NC_001853	Borreliella burgdorferi B31 plasmid lp28-3, complete sequence	14585-14615	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NZ_CP017213	Borreliella burgdorferi strain B331 plasmid B331_lp28_3, complete sequence	13182-13212	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NC_011781	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-3, complete sequence	13960-13990	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	1429458-1429488	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	1612850-1612880	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	26688-26718	7	0.774
NC_020449_26	26.1\|1708008\|31\|NC_020449\|CRISPRCasFinder	1708008-1708038	31	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	147060-147090	7	0.774
NC_020449_16	16.1\|992868\|37\|NC_020449\|PILER-CR,CRISPRCasFinder	992868-992904	37	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	20541-20577	8	0.784
NC_020449_16	16.65\|997770\|41\|NC_020449\|CRISPRCasFinder,PILER-CR	997770-997810	41	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	725599-725639	8	0.805
NC_020449_16	16.76\|998599\|33\|NC_020449\|CRISPRCasFinder,PILER-CR	998599-998631	33	MN940411	Staphylococcus phage f2b1, partial genome	3003-3035	8	0.758
NC_020449_21	21.1\|1426652\|34\|NC_020449\|CRISPRCasFinder	1426652-1426685	34	NZ_CP014203	Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence	43798-43831	8	0.765
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	MN694198	Marine virus AFVG_250M320, complete genome	8746-8780	8	0.771
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	MN694596	Marine virus AFVG_250M321, complete genome	8733-8767	8	0.771
NC_020449_22	22.103\|1494212\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1494212-1494247	36	MN693020	Marine virus AFVG_117M64, complete genome	24584-24619	8	0.778
NC_020449_22	22.103\|1494212\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1494212-1494247	36	MN693056	Marine virus AFVG_25M10, complete genome	35171-35206	8	0.778
NC_020449_22	22.103\|1494212\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1494212-1494247	36	MN693542	Marine virus AFVG_25M165, complete genome	34643-34678	8	0.778
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	114337-114367	9	0.71
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	MK978163	Acinetobacter lwoffii strain M2a plasmid pAVAci94, complete sequence	13167-13197	9	0.71
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	129518-129548	9	0.71
NC_020449_13	13.1\|868475\|31\|NC_020449\|CRISPRCasFinder	868475-868505	31	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	267816-267846	9	0.71
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NZ_CP045692	Klebsiella pneumoniae strain TK421 plasmid pTK421_2, complete sequence	100160-100194	9	0.743
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NC_047707	Uncultured phage_MedDCM-OCT-S38-C3 DNA, complete genome, group G9, isolate: uvMED-CGR-U-MedDCM-OCT-S38-C3	23622-23656	9	0.743
NC_020449_22	22.102\|1494138\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1494138-1494173	36	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	266070-266105	9	0.75
NC_020449_22	22.145\|1497327\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1497327-1497361	35	NZ_CP008851	Acinetobacter baumannii strain AC29 plasmid pAC29b, complete sequence	65524-65558	9	0.743
NC_020449_21	21.1\|1426652\|34\|NC_020449\|CRISPRCasFinder	1426652-1426685	34	NZ_CP024061	Lactobacillus plantarum strain KACC 92189 plasmid unnamed3	18948-18981	10	0.706
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP027401	Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence	139399-139435	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP014450	Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence	157320-157356	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135340	Enterococcus faecium isolate E7356 plasmid 2	52021-52057	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135204	Enterococcus faecium isolate E7171 plasmid 2	124250-124286	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP011829	Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence	122095-122131	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP032307	Enterococcus faecium strain HY07 plasmid unnamed2, complete sequence	139708-139744	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP042840	Enterococcus sp. DA9 plasmid unnamed4	100876-100912	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	13689-13725	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135298	Enterococcus faecium isolate E7429 plasmid 2	177001-177037	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	MT074686	Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence	197836-197872	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP027513	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence	142213-142249	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135244	Enterococcus faecium isolate E6988 plasmid 2	186821-186857	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	202831-202867	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135255	Enterococcus faecium isolate E7098 plasmid 2	169116-169152	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135198	Enterococcus faecium isolate E6055 plasmid 2	180648-180684	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135259	Enterococcus faecium isolate E4457 plasmid 2	118019-118055	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135429	Enterococcus faecium isolate E8927 plasmid 2	149973-150009	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135436	Enterococcus faecium isolate E8691 plasmid 2	113515-113551	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135175	Enterococcus faecium isolate E4402 plasmid 2	119510-119546	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135489	Enterococcus faecium isolate E8414 plasmid 2	186791-186827	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135365	Enterococcus faecium isolate E8195 plasmid 2	163987-164023	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135415	Enterococcus faecium isolate E8328 plasmid 2	196927-196963	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135395	Enterococcus faecium isolate E8290 plasmid 2	196927-196963	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135345	Enterococcus faecium isolate E8202 plasmid 2	145949-145985	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135409	Enterococcus faecium isolate E8284 plasmid 2	196927-196963	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135385	Enterococcus faecium isolate E7933 plasmid 2	195380-195416	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135373	Enterococcus faecium isolate E8172 plasmid 2	114227-114263	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_AP019395	Enterococcus faecium strain QU 50 plasmid pQL50, complete sequence	169482-169518	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP045013	Enterococcus faecium strain LAC7.2 plasmid pI, complete sequence	146449-146485	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP040877	Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence	22900-22936	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP044275	Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence	158131-158167	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR134096	Enterococcus faecium isolate E1334 plasmid 2	95492-95528	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP040850	Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence	49049-49085	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_LR135192	Enterococcus faecium isolate E4438 plasmid 2	114809-114845	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP018066	Enterococcus faecium strain E1 plasmid pE1_230, complete sequence	135972-136008	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NC_020208	Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence	39033-39069	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_CP016164	Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1, complete sequence	136105-136141	10	0.73
NC_020449_22	22.23\|1488285\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1488285-1488321	37	NZ_MG674581	Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence	123932-123968	10	0.73
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	AY133112	Vibrio harveyi bacteriophage VHML, complete genome	20564-20598	10	0.714
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NC_004456	Vibrio phage VHML, complete genome	20564-20598	10	0.714
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	FN297812	Vibrio phage VP58.5, complete genome	5043-5077	10	0.714
NC_020449_22	22.88\|1493097\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1493097-1493131	35	NC_019722	Vibrio phage vB_VpaM_MAR, complete genome	5043-5077	10	0.714
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	345164-345199	10	0.722
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	340213-340248	10	0.722
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	345167-345202	10	0.722
NC_020449_22	22.145\|1497327\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1497327-1497361	35	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	125754-125788	10	0.714
NC_020449_22	22.145\|1497327\|35\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1497327-1497361	35	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	124810-124844	10	0.714
NC_020449_22	22.79\|1492434\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1492434-1492469	36	MK448723	Streptococcus phage Javan271, complete genome	32814-32849	11	0.694
NC_020449_22	22.80\|1492508\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1492508-1492543	36	NZ_CP007066	Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence	3187-3222	11	0.694
NC_020449_22	22.80\|1492508\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1492508-1492543	36	NZ_CP007066	Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence	13154-13189	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	338770-338805	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	336002-336037	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	350060-350095	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	347503-347538	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	347499-347534	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	347499-347534	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	351760-351795	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	336002-336037	11	0.694
NC_020449_22	22.121\|1495544\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1495544-1495579	36	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	347503-347538	11	0.694
NC_020449_22	22.4\|1486875\|36\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1486875-1486910	36	KU160494	Vibrio phage vB_VmeM-32, complete genome	78621-78656	12	0.667
NC_020449_22	22.157\|1498217\|37\|NC_020449\|PILER-CR,CRISPRCasFinder,CRT	1498217-1498253	37	MG250484	Citrobacter phage CF1 ERZ-2017, complete genome	27625-27661	12	0.676

1. spacer 19.2|1324038|26|NC_020449|CRT matches to NZ_CP045276 (Bacillus megaterium strain FDU301 plasmid pFDU301D, complete sequence) position: , mismatch: 4, identity: 0.846

agaaaaagtgagaattgtaatttttc	CRISPR spacer
caaaaaagtgagaattgtatttattc	Protospacer
 .***************** ** ***

2. spacer 29.1|1851834|27|NC_020449|CRISPRCasFinder matches to NZ_CP020004 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.815

gctaccttgctattttcaccatctcac	CRISPR spacer
aattcgttgcttttttcaccatctcac	Protospacer
. * * ***** ***************

3. spacer 29.1|1851834|27|NC_020449|CRISPRCasFinder matches to NC_048762 (Bacillus phage vB_BtS_B83, complete genome) position: , mismatch: 5, identity: 0.815

gctaccttgctattttcaccatctcac	CRISPR spacer
aattcgttgcttttttcaccatctcac	Protospacer
. * * ***** ***************

4. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_CP029854 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_281186 plasmid pK43, complete sequence) position: , mismatch: 6, identity: 0.806

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
aaatggagttatgtaagaaattatctattta	Protospacer
*** ******** ***********  ** *

5. spacer 20.1|1389401|27|NC_020449|CRISPRCasFinder matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 6, identity: 0.778

aggatcagctggattttgagaatgact	CRISPR spacer
aggatcagctggatttttagagatata	Protospacer
***************** ***.  *.

6. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594693 (Variovorax sp. WDL1 plasmid 5) position: , mismatch: 6, identity: 0.829

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttgccttcg	Protospacer
********* ******* *********** *.*.

7. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594677 (Variovorax sp. PBS-H4 plasmid 3) position: , mismatch: 6, identity: 0.829

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttgccttcg	Protospacer
********* ******* *********** *.*.

8. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044974 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence) position: , mismatch: 6, identity: 0.829

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttgccttcg	Protospacer
********* ******* *********** *.*.

9. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044977 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence) position: , mismatch: 6, identity: 0.829

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttgccttcg	Protospacer
********* ******* *********** *.*.

10. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 6, identity: 0.829

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttctcttcc	Protospacer
********* ******* **********  *.*.*

11. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 7, identity: 0.774

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
aattagagttagctaataaattataaataaa	Protospacer
**  .****** **** ************

12. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_CP041128 (Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence) position: , mismatch: 7, identity: 0.774

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
aaaaggagttatctaataagttagtaaccat	Protospacer
**************** **.***  **.  *

13. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_AP019010 (Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence) position: , mismatch: 7, identity: 0.774

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
aaaaggagttatctaataagttagtaaccat	Protospacer
**************** **.***  **.  *

14. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 7, identity: 0.774

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
aaaaggagttatctaataagttagtaaccat	Protospacer
**************** **.***  **.  *

15. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_CP003425 (Serratia sp. SCBI plasmid SCBI_Pl, complete sequence) position: , mismatch: 7, identity: 0.774

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
aaaaggagttatctaataagttagtaaccat	Protospacer
**************** **.***  **.  *

16. spacer 22.8|1487170|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018621 (Paenibacillus xylanexedens strain PAMC 22703 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

aggaattttaagttgtgtaaaaattaaagtctttta	CRISPR spacer
tggaattttaagttgcataaaaattaaaatatgata	Protospacer
 **************..***********.* *  **

17. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594693 (Variovorax sp. WDL1 plasmid 5) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgccttcgccttcg	Protospacer
********* ******* *********.* *.*.

18. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594677 (Variovorax sp. PBS-H4 plasmid 3) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgccttcgccttcg	Protospacer
********* ******* *********.* *.*.

19. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044974 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgccttcgccttcg	Protospacer
********* ******* *********.* *.*.

20. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044977 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgccttcgccttcg	Protospacer
********* ******* *********.* *.*.

21. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttgccggct	Protospacer
********* ******* *********** *  ..

22. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc---	CRISPR spacer
ctttgcctttgcctttgcctttgcc---ggctttgcgg	Protospacer
********* ******* *******   ***.**

23. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045692 (Klebsiella pneumoniae strain TK421 plasmid pTK421_2, complete sequence) position: , mismatch: 7, identity: 0.8

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctttgcctgat	Protospacer
********* ******* *********** *.  .

24. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NC_018990 (Borrelia burgdorferi 297 plasmid 297_lp28-3, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
atgtttaataattagtggattgttgtttgga	Protospacer
. * ..***************** **** **

25. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NC_017405 (Borreliella burgdorferi JD1 plasmid JD1 lp28-3, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
atgtttaataattagtggattgttgtttgga	Protospacer
. * ..***************** **** **

26. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NZ_CP031402 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-3, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
atgtttaataattagtggattgttgtttgga	Protospacer
. * ..***************** **** **

27. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NC_001853 (Borreliella burgdorferi B31 plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
atgtttaataattagtggattgttgtttgga	Protospacer
. * ..***************** **** **

28. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NZ_CP017213 (Borreliella burgdorferi strain B331 plasmid B331_lp28_3, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
atgtttaataattagtggattgttgtttgga	Protospacer
. * ..***************** **** **

29. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NC_011781 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-3, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
atgtttaataattagtggattgttgtttgga	Protospacer
. * ..***************** **** **

30. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
aaaagctataattagaggattgtggttatgg	Protospacer
.*.* * ******** *********** **.

31. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
aaaagctataattagaggattgtggttatgg	Protospacer
.*.* * ******** *********** **.

32. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
gaactcaagaattagtggattgtgatttcaa	Protospacer
**. .*** ***************.***..*

33. spacer 26.1|1708008|31|NC_020449|CRISPRCasFinder matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.774

gagaccaataattagtggattgtggttttga	CRISPR spacer
aaaagctataattagaggattgtggttatgg	Protospacer
.*.* * ******** *********** **.

34. spacer 16.1|992868|37|NC_020449|PILER-CR,CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 8, identity: 0.784

ataaaggttcatcttcatcagcagtgtcagaatcaga	CRISPR spacer
aaaaaggttcgtcttcatcagcagtatcaaggtcaat	Protospacer
* ********.**************.***...***.

35. spacer 16.65|997770|41|NC_020449|CRISPRCasFinder,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.805

-ttctcgtattatttcttttaattcttcttttttcatttttt	CRISPR spacer
gctcttacctt-tttcttttaactcttctttattcatttttt	Protospacer
 .***... ** **********.******** **********

36. spacer 16.76|998599|33|NC_020449|CRISPRCasFinder,PILER-CR matches to MN940411 (Staphylococcus phage f2b1, partial genome) position: , mismatch: 8, identity: 0.758

ggtgcaagcacttattcactttatgacaaccca	CRISPR spacer
gcatctaaaacttattcacttaatgacatccca	Protospacer
*   * *. ************ ****** ****

37. spacer 21.1|1426652|34|NC_020449|CRISPRCasFinder matches to NZ_CP014203 (Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence) position: , mismatch: 8, identity: 0.765

gtaagaaaagaaccgacaaaactatatttattgg	CRISPR spacer
gaaaagaaagaacagataaaactatatttaaagt	Protospacer
* **..******* **.*************  *

38. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 8, identity: 0.771

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgccctctaccacc	Protospacer
********* ******* *******.*. .** .*

39. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 8, identity: 0.771

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgccctctaccacc	Protospacer
********* ******* *******.*. .** .*

40. spacer 22.103|1494212|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 8, identity: 0.778

tgcgggcaat-ggaatagatattgacgcagaaaaaaa	CRISPR spacer
-agaagcagcaggaatagatattgatgcagaaaaaaa	Protospacer
 . ..***.. **************.***********

41. spacer 22.103|1494212|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MN693056 (Marine virus AFVG_25M10, complete genome) position: , mismatch: 8, identity: 0.778

tgcgggcaat-ggaatagatattgacgcagaaaaaaa	CRISPR spacer
-agaagcagcaggaatagatattgatgcagaaaaaaa	Protospacer
 . ..***.. **************.***********

42. spacer 22.103|1494212|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MN693542 (Marine virus AFVG_25M165, complete genome) position: , mismatch: 8, identity: 0.778

tgcgggcaatggaatagatattgacgcagaaaaaaa	CRISPR spacer
agaggcagctggaatagatattgatgcagagaaaaa	Protospacer
 * **  . ***************.*****.*****

43. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
tttctgcgttatctaatatattataaatatc	Protospacer
     * ********* * ***********.

44. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to MK978163 (Acinetobacter lwoffii strain M2a plasmid pAVAci94, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
atttaattttatataataaattataaatatt	Protospacer
*   ..  **** *** **************

45. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
tttctgcgttatctaatatattataaatatc	Protospacer
     * ********* * ***********.

46. spacer 13.1|868475|31|NC_020449|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 9, identity: 0.71

aaaaggagttatctaagaaattataaatatt	CRISPR spacer
tttctgcgttatctaatatattataaatatc	Protospacer
     * ********* * ***********.

47. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045692 (Klebsiella pneumoniae strain TK421 plasmid pTK421_2, complete sequence) position: , mismatch: 9, identity: 0.743

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
ctttgcctttgcctttgcctttgcctgatccagta	Protospacer
********* ******* ********    *  *

48. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NC_047707 (Uncultured phage_MedDCM-OCT-S38-C3 DNA, complete genome, group G9, isolate: uvMED-CGR-U-MedDCM-OCT-S38-C3) position: , mismatch: 9, identity: 0.743

ctttgccttggcctttggctttgcctttggccttc	CRISPR spacer
tggtgccttggcctttggttctgcctttggcgccg	Protospacer
.  ***************.*.********** ..

49. spacer 22.102|1494138|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 9, identity: 0.75

tccgcggcaagccaaggccaagcaaaggcatatata	CRISPR spacer
tggcaggcaagccacggccaggcaaaggcattaatg	Protospacer
*    ********* *****.**********  **.

50. spacer 22.145|1497327|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008851 (Acinetobacter baumannii strain AC29 plasmid pAC29b, complete sequence) position: , mismatch: 9, identity: 0.743

atttttgaattatttttattttccttcatcaggca	CRISPR spacer
atatttgaattatttttattttactgccttgctga	Protospacer
** ******************* ** * *..   *

51. spacer 21.1|1426652|34|NC_020449|CRISPRCasFinder matches to NZ_CP024061 (Lactobacillus plantarum strain KACC 92189 plasmid unnamed3) position: , mismatch: 10, identity: 0.706

gtaagaaaagaaccgacaaaactatatttattgg	CRISPR spacer
atgatgctcaaaccgacaaaagtatctttattgg	Protospacer
.*.* .   .*********** *** ********

52. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027401 (Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

53. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014450 (Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

54. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135340 (Enterococcus faecium isolate E7356 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

55. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135204 (Enterococcus faecium isolate E7171 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

56. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011829 (Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

57. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032307 (Enterococcus faecium strain HY07 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

58. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042840 (Enterococcus sp. DA9 plasmid unnamed4) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

59. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT598664 (Enterococcus faecium isolate Ef_aus00233 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

60. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135298 (Enterococcus faecium isolate E7429 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

61. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

62. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027513 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

63. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

64. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

65. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135255 (Enterococcus faecium isolate E7098 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

66. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135198 (Enterococcus faecium isolate E6055 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

67. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135259 (Enterococcus faecium isolate E4457 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

68. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135429 (Enterococcus faecium isolate E8927 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

69. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135436 (Enterococcus faecium isolate E8691 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

70. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135175 (Enterococcus faecium isolate E4402 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

71. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

72. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135365 (Enterococcus faecium isolate E8195 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

73. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

74. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

75. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135345 (Enterococcus faecium isolate E8202 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

76. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

77. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135385 (Enterococcus faecium isolate E7933 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

78. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135373 (Enterococcus faecium isolate E8172 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

79. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019395 (Enterococcus faecium strain QU 50 plasmid pQL50, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

80. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045013 (Enterococcus faecium strain LAC7.2 plasmid pI, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

81. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

82. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044275 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

83. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134096 (Enterococcus faecium isolate E1334 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

84. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040850 (Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

85. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135192 (Enterococcus faecium isolate E4438 plasmid 2) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

86. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018066 (Enterococcus faecium strain E1 plasmid pE1_230, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

87. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

88. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016164 (Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

89. spacer 22.23|1488285|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG674581 (Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence) position: , mismatch: 10, identity: 0.73

tattcacaatgaactttcaccctacttatttgcccgg	CRISPR spacer
caaaaacaatgcacattcaccctacttatttttacgt	Protospacer
.*   ****** ** **************** . **

90. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to AY133112 (Vibrio harveyi bacteriophage VHML, complete genome) position: , mismatch: 10, identity: 0.714

ctttgccttggcctttggctttgcctttggccttc----	CRISPR spacer
gggtgccttggtctttgtctttgccttt----tccaaag	Protospacer
   ********.***** **********    *.*

91. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NC_004456 (Vibrio phage VHML, complete genome) position: , mismatch: 10, identity: 0.714

ctttgccttggcctttggctttgcctttggccttc----	CRISPR spacer
gggtgccttggtctttgtctttgccttt----tccaaag	Protospacer
   ********.***** **********    *.*

92. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to FN297812 (Vibrio phage VP58.5, complete genome) position: , mismatch: 10, identity: 0.714

ctttgccttggcctttggctttgcctttggccttc----	CRISPR spacer
gggtgccttggtctttgtctttgccttt----tccaaag	Protospacer
   ********.***** **********    *.*

93. spacer 22.88|1493097|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NC_019722 (Vibrio phage vB_VpaM_MAR, complete genome) position: , mismatch: 10, identity: 0.714

ctttgccttggcctttggctttgcctttggccttc----	CRISPR spacer
gggtgccttggtctttgtctttgccttt----tccaaag	Protospacer
   ********.***** **********    *.*

94. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 10, identity: 0.722

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
gatccaccggaaagattttaaacgttatcccacttt	Protospacer
 . * ** ********* *************   *

95. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 10, identity: 0.722

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
gatccaccggaaagattttaaacgttatcccacttt	Protospacer
 . * ** ********* *************   *

96. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 10, identity: 0.722

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
gatccaccggaaagattttaaacgttatcccacttt	Protospacer
 . * ** ********* *************   *

97. spacer 22.145|1497327|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 10, identity: 0.714

atttttgaattatttttattttccttcatcaggca	CRISPR spacer
ttttttaaaatatttttattttccttttttttgtt	Protospacer
 *****.** ****************. *.  *.

98. spacer 22.145|1497327|35|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 10, identity: 0.714

atttttgaattatttttattttccttcatcaggca	CRISPR spacer
ttttttaaaatatttttattttccttttttttgtt	Protospacer
 *****.** ****************. *.  *.

99. spacer 22.79|1492434|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MK448723 (Streptococcus phage Javan271, complete genome) position: , mismatch: 11, identity: 0.694

cattttttaactgccatttcttttttctcctttttt	CRISPR spacer
ctcgaaactactaccatttattttttctccttttta	Protospacer
* .    . ***.****** ***************

100. spacer 22.80|1492508|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007066 (Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence) position: , mismatch: 11, identity: 0.694

attcattgatattattttcaaatttgctattgaagg	CRISPR spacer
caatattgatattagtttcaaattttctatcttttg	Protospacer
   .********** ********** ****.    *

101. spacer 22.80|1492508|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007066 (Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence) position: , mismatch: 11, identity: 0.694

attcattgatattattttcaaatttgctattgaagg	CRISPR spacer
caatattgatattagtttcaaattttctatcttttg	Protospacer
   .********** ********** ****.    *

102. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

103. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

104. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

105. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

106. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

107. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

108. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

109. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

110. spacer 22.121|1495544|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 11, identity: 0.694

tgacaacaggaaagattgtaaacgttatccccgata	CRISPR spacer
cattcaccggaaagattttaaacgttatcccacttt	Protospacer
.. . ** ********* *************   *

111. spacer 22.4|1486875|36|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to KU160494 (Vibrio phage vB_VmeM-32, complete genome) position: , mismatch: 12, identity: 0.667

cccgcatttatcattttagtaagaatgaattgcaaa	CRISPR spacer
aattgtttcattattttagtaagaatgaattgactc	Protospacer
  .   **.**.********************

112. spacer 22.157|1498217|37|NC_020449|PILER-CR,CRISPRCasFinder,CRT matches to MG250484 (Citrobacter phage CF1 ERZ-2017, complete genome) position: , mismatch: 12, identity: 0.676

tttgatcttgaagagatgggcatggatatgccagaga	CRISPR spacer
gttggtcttgaagcgatgggcatggatgatttcaaac	Protospacer
 ***.******** *************.  .. .*.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020449

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection