CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014500	Dickeya dadantii 3937, complete sequence	4 crisprs	WYL,cas8e,RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,csa3	0	30	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014500_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014500_1

1728693-1730439

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CRT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	PILER-CR
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CRISPRCasFinder

26 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_014500_1

>merge|NC_014500|1|1728693-1730439|CRT,PILER-CR,CRISPRCasFinder
CAATGCGATGTCGCGCCTGCGTGAGGCGCGACATTTCGTCAGCAATCGAGACATCCTCACGGAGCTGTTTCAATCCACGCGCCTGCGTGAGGCGCGACAACCCGAGCCGCAGATACAAAAACCGGACTGGATGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGGACCTGGGGCGCGCAACCCGGCGCTTCTCTGTTGTTTCAATCCACGCGCCTGCGTGAGGCGCGCGATGGGTCCGTCAACATCATCAAACATTGTCGGGTTTCAATCCAGGCACCTGCGTGAGGCGCGACTGATGTATTCGGCGGTCACGACGGATGCCGCCGGGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCTGCTACCTGCACCGCACCCTTCTTGACGGCGACAAGTTTCAATCCACGCGCCTGCGTGAGGCGCGACTGACGCTGTTATTGAGTCTGTGTTTAACGAGCTGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGCGTCTACGTCGGCGTGACCAGATTATTGCATCGGTTTCAATCCACGCGCCTGCGTGAGGCGCGACAATCAGGTCGTAGCGCTGGTTGTTCACCCAGTAGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGCCTCCGGCCAGTGCTCATCCCAGCGATCGACGGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGGCGGCGATGCCGGGTATCTCATTACCAACATCCTGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCCGTTATCTCATCGCGGCCGACCAGGCTTGACTGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGTCGCAAGGGCGCTGGTGCGCGCAAATCTGCCGGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCTTAATGCGCTGAGCAGTATCGTGAGCAAAATCGTTTCAATCCACGCGCCTGTGTGAGGCGCGACTGGCATAGCTGTGACTGCGGTCGCTATCTAAGGGGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGAGCGCCCCAGCTGTTCCGCCTCGCCATACTGGTGTTTCAATCCACGCGCCTGTGTGAGGCGCGACACCCCGACAGTGTTAGGGTGATCACTATAATCAGAGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGATCCAACCCCATACGGTTAGCCACCATCGATGAGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGACAGTCCGTGCGCAGGCGTTCGACTATTTCCTACGGGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCACGCTGCGCAAAAAACAAATATTGCTATATCTGGTTTCAATCCACGCGCCTGTGTGAGGCGCGACTAGTAGTTGTAGCCATTTAAGTCCCCTCACATATGTTTCAATCCACGCGCCTGTGTGAGGCGCGACTGTATCTAGTGTTATCTTTAACTTCATTTTTTATGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCAGCTACGTTGGGGCGATCAGCAAACGTGATCGAGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCCTTTTTACGGTCTGCATCCCCGTCGCGGCAGCAGTTTCAATCCACGCGCCTGTGTGAGGCGCGACGACCTGCCGTTGGTAGCCCAGCGGATGAATAGATGTTTCAATCCACGCGCCTGTGTGAGGCGCGACCGATCATGACCTGGTGTATCGGGAACGTGGTCGGGTTTCAATCCACGCGCCTGTGTGAGGCGCGAC

>NC_014500|1|1|1728693-1730439|CRT
CAATGCGATGTCGCGCCTGCGTGAGGCGCGAC	ATTTCGTCAGCAATCGAGACATCCTCACGGAGCT
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	AACCCGAGCCGCAGATACAAAAACCGGACTGGAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GGACCTGGGGCGCGCAACCCGGCGCTTCTCTGTT
GTTTCAATCCACGCGCCTGCGTGAGGCGCGCG	ATGGGTCCGTCAACATCATCAAACATTGTCGG
GTTTCAATCCAGGCACCTGCGTGAGGCGCGAC	TGATGTATTCGGCGGTCACGACGGATGCCGCCGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CTGCTACCTGCACCGCACCCTTCTTGACGGCGACAA
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	TGACGCTGTTATTGAGTCTGTGTTTAACGAGCT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GCGTCTACGTCGGCGTGACCAGATTATTGCATCG
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	AATCAGGTCGTAGCGCTGGTTGTTCACCCAGTA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GCCTCCGGCCAGTGCTCATCCCAGCGATCGACG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GGCGGCGATGCCGGGTATCTCATTACCAACATCCT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CCGTTATCTCATCGCGGCCGACCAGGCTTGACT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GTCGCAAGGGCGCTGGTGCGCGCAAATCTGCCG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CTTAATGCGCTGAGCAGTATCGTGAGCAAAATC
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TGGCATAGCTGTGACTGCGGTCGCTATCTAAGGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GAGCGCCCCAGCTGTTCCGCCTCGCCATACTGGT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	ACCCCGACAGTGTTAGGGTGATCACTATAATCAGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GATCCAACCCCATACGGTTAGCCACCATCGATGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GACAGTCCGTGCGCAGGCGTTCGACTATTTCCTACGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CACGCTGCGCAAAAAACAAATATTGCTATATCTG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TAGTAGTTGTAGCCATTTAAGTCCCCTCACATAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TGTATCTAGTGTTATCTTTAACTTCATTTTTTAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CAGCTACGTTGGGGCGATCAGCAAACGTGATCGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CCTTTTTACGGTCTGCATCCCCGTCGCGGCAGCA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GACCTGCCGTTGGTAGCCCAGCGGATGAATAGAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CGATCATGACCTGGTGTATCGGGAACGTGGTCGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC

>NC_014500|1|1|1728759-1730439|PILER-CR
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	AACCCGAGCCGCAGATACAAAAACCGGACTGGAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GGACCTGGGGCGCGCAACCCGGCGCTTCTCTGTT
GTTTCAATCCACGCGCCTGCGTGAGGCGCGCG	ATGGGTCCGTCAACATCATCAAACATTGTCGG
GTTTCAATCCAGGCACCTGCGTGAGGCGCGAC	TGATGTATTCGGCGGTCACGACGGATGCCGCCGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CTGCTACCTGCACCGCACCCTTCTTGACGGCGACAA
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	TGACGCTGTTATTGAGTCTGTGTTTAACGAGCT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GCGTCTACGTCGGCGTGACCAGATTATTGCATCG
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	AATCAGGTCGTAGCGCTGGTTGTTCACCCAGTA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GCCTCCGGCCAGTGCTCATCCCAGCGATCGACG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GGCGGCGATGCCGGGTATCTCATTACCAACATCCT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CCGTTATCTCATCGCGGCCGACCAGGCTTGACT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GTCGCAAGGGCGCTGGTGCGCGCAAATCTGCCG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CTTAATGCGCTGAGCAGTATCGTGAGCAAAATC
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TGGCATAGCTGTGACTGCGGTCGCTATCTAAGGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GAGCGCCCCAGCTGTTCCGCCTCGCCATACTGGT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	ACCCCGACAGTGTTAGGGTGATCACTATAATCAGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GATCCAACCCCATACGGTTAGCCACCATCGATGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GACAGTCCGTGCGCAGGCGTTCGACTATTTCCTACGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CACGCTGCGCAAAAAACAAATATTGCTATATCTG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TAGTAGTTGTAGCCATTTAAGTCCCCTCACATAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TGTATCTAGTGTTATCTTTAACTTCATTTTTTAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CAGCTACGTTGGGGCGATCAGCAAACGTGATCGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CCTTTTTACGGTCTGCATCCCCGTCGCGGCAGCA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GACCTGCCGTTGGTAGCCCAGCGGATGAATAGAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CGATCATGACCTGGTGTATCGGGAACGTGGTCGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC

>NC_014500|1|1|1728759-1730439|CRISPRCasFinder
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	AACCCGAGCCGCAGATACAAAAACCGGACTGGAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GGACCTGGGGCGCGCAACCCGGCGCTTCTCTGTT
GTTTCAATCCACGCGCCTGCGTGAGGCGCGCG	ATGGGTCCGTCAACATCATCAAACATTGTCGG
GTTTCAATCCAGGCACCTGCGTGAGGCGCGAC	TGATGTATTCGGCGGTCACGACGGATGCCGCCGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CTGCTACCTGCACCGCACCCTTCTTGACGGCGACAA
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	TGACGCTGTTATTGAGTCTGTGTTTAACGAGCT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GCGTCTACGTCGGCGTGACCAGATTATTGCATCG
GTTTCAATCCACGCGCCTGCGTGAGGCGCGAC	AATCAGGTCGTAGCGCTGGTTGTTCACCCAGTA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GCCTCCGGCCAGTGCTCATCCCAGCGATCGACG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GGCGGCGATGCCGGGTATCTCATTACCAACATCCT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CCGTTATCTCATCGCGGCCGACCAGGCTTGACT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GTCGCAAGGGCGCTGGTGCGCGCAAATCTGCCG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CTTAATGCGCTGAGCAGTATCGTGAGCAAAATC
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TGGCATAGCTGTGACTGCGGTCGCTATCTAAGGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GAGCGCCCCAGCTGTTCCGCCTCGCCATACTGGT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	ACCCCGACAGTGTTAGGGTGATCACTATAATCAGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GATCCAACCCCATACGGTTAGCCACCATCGATGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GACAGTCCGTGCGCAGGCGTTCGACTATTTCCTACGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CACGCTGCGCAAAAAACAAATATTGCTATATCTG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TAGTAGTTGTAGCCATTTAAGTCCCCTCACATAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	TGTATCTAGTGTTATCTTTAACTTCATTTTTTAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CAGCTACGTTGGGGCGATCAGCAAACGTGATCGA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CCTTTTTACGGTCTGCATCCCCGTCGCGGCAGCA
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	GACCTGCCGTTGGTAGCCCAGCGGATGAATAGAT
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC	CGATCATGACCTGGTGTATCGGGAACGTGGTCGG
GTTTCAATCCACGCGCCTGTGTGAGGCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014500.1\|WP_013317289.1\|1735885_1738147_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_014500.1\|WP_033111747.1\|1721222_1721783_+\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
NC_014500.1\|WP_042318253.1\|1738642_1740022_+\|diaminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|235889
NC_014500.1\|WP_033112278.1\|1727782_1728676_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NC_014500.1\|WP_013317287.1\|1733466_1735215_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_014500.1\|WP_033111748.1\|1730940_1731966_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_014500.1\|WP_013317292.1\|1742414_1744277_+\|IucA/IucC-family-siderophore-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226715
NC_014500.1\|WP_013317288.1\|1735211_1735874_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187534
NC_014500.1\|WP_033112277.1\|1726916_1727780_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NC_014500.1\|WP_013317275.1\|1722732_1723617_-\|aldo/keto-reductase-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236676
NC_014500.1\|WP_013317277.1\|1724835_1725693_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
NC_014500.1\|WP_013317274.1\|1721787_1722537_+\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NC_014500.1\|WP_013317291.1\|1740193_1742308_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_014500.1\|WP_013317283.1\|1730619_1730913_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_014500.1\|WP_013317278.1\|1725825_1726758_+\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132472
NC_014500.1\|WP_013317285.1\|1731946_1732588_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_014500.1\|WP_013317286.1\|1732591_1733470_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_014500.1\|WP_013317276.1\|1723719_1724640_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NC_014500.1\|WP_013317272.1\|1720053_1721223_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NC_014500.1\|WP_013317271.1\|1719334_1720057_+\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118

Protein	Function_ID	Function_description	E-value
NC_014500.1\|WP_013317289.1\|1735885_1738147_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.85531e-48
NC_014500.1\|WP_033111747.1\|1721222_1721783_+\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	1.42597e-93
NC_014500.1\|WP_042318253.1\|1738642_1740022_+\|diaminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|235889	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate transaminase.	0
NC_014500.1\|WP_033112278.1\|1727782_1728676_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	4.01668e-79
NC_014500.1\|WP_013317287.1\|1733466_1735215_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_014500.1\|WP_033111748.1\|1730940_1731966_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	1.10195e-176
NC_014500.1\|WP_013317292.1\|1742414_1744277_+\|IucA/IucC-family-siderophore-biosynthesis-protein	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	7.51822e-52
NC_014500.1\|WP_013317288.1\|1735211_1735874_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.77609e-98
NC_014500.1\|WP_033112277.1\|1726916_1727780_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.21654e-84
NC_014500.1\|WP_013317275.1\|1722732_1723617_-\|aldo/keto-reductase-family-oxidoreductase	gnl\|CDD\|236676	PRK10376, PRK10376, putative oxidoreductase; Provisional.	0
NC_014500.1\|WP_013317277.1\|1724835_1725693_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.12844e-122
NC_014500.1\|WP_013317274.1\|1721787_1722537_+\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	1.60288e-135
NC_014500.1\|WP_013317291.1\|1740193_1742308_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.87578e-58
NC_014500.1\|WP_013317283.1\|1730619_1730913_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.33976e-29
NC_014500.1\|WP_013317278.1\|1725825_1726758_+\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132472	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein. This model is a subset of the broader subfamily of phosphate/phosphonate binding protein ABC transporter components, TIGR01098. In this model all members of the seed have support from genomic context for association with pathways for the metabolims of phosphonates, particularly the C-P lyase system, GenProp0232. This model includes the characterized phnD gene from E. coli. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.	1.27774e-106
NC_014500.1\|WP_013317285.1\|1731946_1732588_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.62524e-42
NC_014500.1\|WP_013317286.1\|1732591_1733470_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.7046e-159
NC_014500.1\|WP_013317276.1\|1723719_1724640_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.53861e-98
NC_014500.1\|WP_013317272.1\|1720053_1721223_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NC_014500.1\|WP_013317271.1\|1719334_1720057_+\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.35364e-134

>NC_014500.1|WP_033112278.1|1727782_1728676_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MTPLTPADIAAMKQQHPALFSQQRRYVWRVGLMAAAVLLYYLAFLAFFGISAGQWLHGLSELGRYFLRMFVWHDFLNWPFGYYLSQVFITIAIVFAGTLTATVVALPLSFLAARNVMHEPMLRPVALLVRRLLDVLRGIDMAIWGLIFVRAVGMGPLSGALAILMQDTGLLGKLYAEGHEAVERSPSRGLGAVGANSLQKHRFGIFTQSFPTFLALSLYQMESNVRSAAVLGFVGAGGVGLVYAENMRLWNWDVVMFITLILVVVVMLMDALSAHLRQRYIIGKPLPLFEADPPSPR
>NC_014500.1|WP_033112277.1|1726916_1727780_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MNPDFERYYQRIRTQQKRESLIWTLVLVVLYIGAGALSEFNLHTLWTSLPHFFDYLIETLPVLHWSLLFADGHTEGSLAYWGYRLNIQLPLIWETLNLALAATLLSVAASVVLGFLAAGNTRSPPGVRFAVRAMVAFLRTMPELAWAVMFVMAFGIGVIPGFLALALHTIGSLTKLFYEAIETASERPVRGLAACGAGVLQRMRFGLWPQVKPIVLSYSFMRLEINFRQSTILGLVGAGGIGQELMTNIKLDRYDQVSMTMLLIIVVVSILDALSGRLRRQVVEGGK
>NC_014500.1|WP_013317278.1|1725825_1726758_+|phosphonate-ABC-transporter-substrate-binding-protein
MKKTFTLTTLLAGAVMSASVFAAETPKTLNLGILGGQNATQQIGDNQCVKQFLDKELNVDTQLRNSSDYAGVIQGLLGKKIDLVLSMSPSSYASVYIKEPNAVDVVGIAVDDVDQSRGYHSVVIVKADSSYQKLEDLKGKAFGFADPDSTSGYLIPNQAFKEKFGGSADNKYNNFFSSVTFSGGHEQDILGVLNGQFDGAVTWASMIGDYNTGYTSGAFGRLIRMDHPDLMKQIRIIWQSPLIPNGPILVSNALPADFKAKLITAVNKLDKEDHTCFIKAMGGKQHIGPASVDDYKTIIAMKRELTKGNR
>NC_014500.1|WP_013317277.1|1724835_1725693_+|phosphonate-ABC-transporter-ATP-binding-protein
MAQALLASEGATLLRAHHFQTQPQQTVLSVRQLCKAYSSQQRVLENLNFDLHAGEMVAVIGRSGAGKSTLLHVMNGTIPASEGQILRYPARQDGGQGDTQDILRFSTRQMRQWRSECGMIFQDFCLVPRLDVLTNVLLGRLSRTSTLKSFFKLFSDEDRAHAIGLLQWMNLLPHALQRAENLSGGQMQRVAICRALMQNPKILLADEPVASLDPKNTRRIMDVLRQVSANGITVVVNLHSVELVKEYCTRAIGIAQGRILFDGPPSELTDSLLRTLYGDDLQPVH
>NC_014500.1|WP_013317276.1|1723719_1724640_+|LysR-family-transcriptional-regulator
MNIDLKDLEAFVAVARAGGFRDAARANGVSASGLSEAVRRLETQLAIRLLHRTTRSVAPTEAGQSLLARLVPALTEVENALDVVNGFRDRPTGTLRLNVPVSAARLVLPGLIAPFLAAYPDIKLEVVVEESFVDMLAAGCDAGIRYGERLEQDMIAVPIGPRSQRLAIAASPAYFARCGRPAHPRDLVGHACLRGRFPSGTMPLWEFERNGEVVQVDPAGPLVVQIGGGTDLLIDVAIAGVGIVYLFEDWLRPHLENGTLEPAIEPWWQRFPGPFLYYPGHRLIPTPLRAFIDFIKASTVPVVSDR
>NC_014500.1|WP_013317275.1|1722732_1723617_-|aldo/keto-reductase-family-oxidoreductase
MSTINTLDTVTLGSYTIKRLGYGTMRLAGPGVFGPPKDKNAVLAVLREAVALGVNHIDTADCYGPHVTNRLIREALAPYSDDLVIATKVGVGRGKDGSWFDASSPRELTQAVHDNLRDLGLDVLDVVNFRVMTNPHAPMEGSIEAQLTTLAELQQQGLIRHIGLSNVTASQVAQGQKICAIVCVQNHYNLAHRTDDELIDALAAAGIAYVPFFPLGGFNPLQSSILSNEAQRLGITPIQLALAWLLRRSPNITLIPGTSSVMHLRENLAAINIKLPEEVMTILNNVAVRSGAAV
>NC_014500.1|WP_013317274.1|1721787_1722537_+|phosphonate-metabolism-protein-PhnP
MELMFMGTGDAQQVPLTGCDCIACERARLDPRFRRGPSSMLVRCDGEATLLDAGVTQLEQRFGVNEIRRILLTHYHVDHVQGLFSLRWGIGDRIPVFGPPDEQGCDDLYKHPRRLDFQPAMTPFQTVAMGALRVTALPLNHSKPTFGYLLEHGGQSVAYLTDTCGLPDDTLDFLCGKPLDHMVMDCTQPPRDQPPLNHSDLNTVLRVREQLRPTQTWLTHVSHETDAWLMQNNLPDGVRAAADGAWIVM
>NC_014500.1|WP_033111747.1|1721222_1721783_+|ribose-1,5-bisphosphokinase
MARLIWLTGASGSGKDSLLDALRQTNPARLLVAHRYITRPAQAGGENHIALSDAEFAYRRECGLFALHWQAHQYQYGIGVEIDLWLSAGMDVVVNGSRSHHPQVQQRYGDRLLPVCLQVSPAVLAQRLRQRGREDEAQIAQRLQRASAMPVPTACRLLNNDGSLAQTLLAFHTLLAAEKREAEKWK
>NC_014500.1|WP_013317272.1|1720053_1721223_+|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MSAATQIINTTRIINNVQLVLQDEVVSGSLAWRDGVIEAFSSTPSQLPQALDGEGGWLLPGLVELHTDNLDKFFMPRPKVDWPAHSAMSSHDALIVSSGITTVLDAVAIGDVRDGGHRLDNLRRMIDAVIHSQQLGVNRAQHLLHLRCELPHDSTLPLFEALMDTPEVALVSLMDHSPGQRQFATPEKYREYYQGKYRLNNAEMDAFETEQRMLSERWSTPNRLAIAAHCRERGIALASHDDATAAHVDESLALGSVIAEFPTTEMAAQASHASGMKVLMGAPNIVRGGSHSGNVAASHLAEQGLLDILSSDYYPASLLDAAFRLAADERNPFTLPQTVAMVSANPAQSVGLSDRGRIADGLRADLVLAHHSHGQVRIRQVWAQGRQVF
>NC_014500.1|WP_013317271.1|1719334_1720057_+|phosphonate-C-P-lyase-system-protein-PhnL
MTTEGTAMTILRVENLSKTFVLHNQHAARLPVLHQASLTVDAGECVVLHGHSGSGKSTLLRSLYANYQPDSGRVWVRHRNTWVDLVTAPARQVLAVRRNTIGWVSQFLRVIPRIPTLEVVMQPLLERGEERAVCEARASELLTRLNVPRRLWTLAPATFSGGEQQRVNIARGFIADYPLLLLDEPTASLDAANREAVVGLIEEARSRGAAVVGIFHDAEVRARVADRLHHMAPVTQELTS
>NC_014500.1|WP_013317283.1|1730619_1730913_-|CRISPR-associated-endonuclease-Cas2
MMVLITYDVSLEDANGPRRLRQLAKICLDYGVRVQYSVFECDVDAAQWVVLRQKLLTTYDERVDSLRFYRLGKGWRDKVEHHGAKPALDIFGDTLIV
>NC_014500.1|WP_033111748.1|1730940_1731966_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLQNSLYITRDGAWLHKERETLLIEQTVDGQRQKLLQVPIHSVGNIFCFGNVLVSPQLMGFCGENGTQLSFFDQFGRFLARVVGRQSGNVLLRRAQFQASTTQAATLARHILTAKIQSSRRVLLRHLRTYGDNPALQAAADRLRQIVAELPAKTDIERLRGLEGEAASHYFGVFDLLIAARRELRFNGRSRRPPRDPVNALLSFFYAILSKEISGALQGVGLDPQVGFLHQERPGRDSLALDLLEEFRAPLVDRLVLTLINRQQVTMQDFTTDVLGGVTLKDEARKRVLQAWQARKQEEITHPFLNEKVAVGLLPHMQAMLLARHLRGDLAHYPPYVLR
>NC_014500.1|WP_013317285.1|1731946_1732588_-|CRISPR-associated-protein-Cas4
MDDPRLVPISALQHYAFCPRQCALIHTEQVWADNWLTAQGTMLHQRVDHGLPETRRGIRYERGVIVQAPQLGLSGKLDLLEQVLATGALTPVEYKRGKPKIHQADKVQLCAQALALEEMSGQPIPVGALWYWETRRRLEVELDEALRTHTRQLIAAVSHLLQQGETPHATPGKHCLACSLNELCQPSLQHADRSGDYIRRLYLVEDRDEETPE
>NC_014500.1|WP_013317286.1|1732591_1733470_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLNHRYEFVLLFDVKDGNPNGDPDAGNLPRVDAETGQGLVTDVCLKRKIRNYVGLTRNEQPPYEIYVKEKAILNKTHERAYEGIGKSEALNSDKKRKGGDAVDEARQWMCRNFYDVRTFGAVMSTGVNCGQVRGPVQLTFSRSIEPIVALEHAITRCAVATEKEALAQDGDNRTMGRKNTVPYGLYRCHGYISAHLARQTGFSDDDLALLWEALLNMFEHDRSAARGEMNACALYVFQHDSELGNAPARKLFDCLHITRTSDGPARSYADYQVTLDDAALPAGVTLHRLLE
>NC_014500.1|WP_013317287.1|1733466_1735215_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILHALCQYYQRRQKEADSALPAFGFEQKAIPFVIVITSDGRFLQFEDTRYLDEAQGKKPQARLFTVAKSIKKTSGVAANLLWDPADYVLGIDKKGNPTRTEQQKACFIRRIQALAAFAPQDSGLQAVLAFYQRYDSLPQPELEQDQRWAEINDTNPLLTFRLVTDADCLVFQRPAVLVAYQHVLADSDEPAGRCLVSGERLPVATLHPSIKGVWGAQSSGASLVSFNLDAFRSFGKEQGANAPISEQAAFEYTTALNALLQTHSPNRLQLGETSVVCWASRAHPLESWLPTLFGSSHSDDPDSGVRTVTALFNSVHNGAYCGADGDAHFYLLGLSPNAARVAIRFFQEGTVAQFAERLREWFGDIDIIKPKAVTYPFPPLKALLRACALLNKEENLSPLLAGTTVRAILSGQPLPAALMTALLQRIRAERGDVSYYRASLMKACLNRAFRRQSIKEVSVSLDPEEQRIGYRLGRLFATLEQIQHAANPTINATLCDRYYSSASSTPVAVFHTLMRLHTHHLKKLKTPLQIHYQKCIGEIIDDITEFPAHLNQEQQGLFAIGYYHQRQHFFSQSTSSQGDEQ
>NC_014500.1|WP_013317288.1|1735211_1735874_-|type-I-C-CRISPR-associated-protein-Cas5
MPFCLDVQGEFACFTRPEMKVERVSYDVMTPSAARSIFEAILWKPAIAWRVTRIEVINPIRWINLRRNEVGSVISSRVVTSAMKAGSGSLGLYIEDDRQQRAGLFLRDVHYRLHGEFTLTAQAGCGDNAGKFAEMFRRRAQKGQCINQPYLGCREFAADVILINDDTPQPPALAQDRELGWMLYDMDYRQAQNPTPRFFHANMTQGVIDIPAPDSPEVVA
>NC_014500.1|WP_013317289.1|1735885_1738147_-|CRISPR-associated-endonuclease-Cas3''
MAERLPFIAHVKRNNDGDWNTPHYLDEHLRDVAELAAAIAPATLSDWARLAGRWHDLGKYRPPFQDYLRKASGYDAENAHIEQAPGRVSHSIAGARYAITALGNGLGHILAYAISGHHAGLPNGRGDAGSLYNRLTTGDEEYQQAREQAIPADILQAIPVSLPPLSEENIALWLRMLFSCLVDADFLDTERYMSPENAARREKTASLTLASLQPRYQSHMHTLAGRNPQSPLHQLRQSILDETRQAASLPPGLFSLTVPTGGGKTLASLGFALDHALRHGKKRIIYAIPYTSIIEQNAAVFRQALGDDAVVEHHCNLDNSDDARARLACENWDAPIIVTTNVQLFESLHAARTSRCRKLHNLADSVIILDEAQQLPRDFHAPITQVMQQLTELFGVSWLLCTATQPVLEAQRNPFGQLLMPGLTQVREIITRPTQLADALRRVEVRFSLTPCEWRILAADLAAQPCVLCIVNTRADARTLYQLLADDPDVLHLSAQMCAEHRSQVITQIKQRLEARQQGDNRPLRVISTPLVEAGVDLDFPTVWRAIAGLDAIAQAAGRCNREGQLTRRGIVQVFMPPALPPAGALRQAAQCTLEMVNACLLTDPLSPEAFHDYFTRFNSKGERDRHGIGRLLRAEPDSDIGLAICFRDAAEKFRLIDDTGVAVIVPWQPDDEEPSPVEYWLQCLESDAGAHWVYRKLQRYSVTLPQTLAVRLQALGALQPRAGLLVLLESHYCRHTGVKLPEALLSAEDSVI
>NC_014500.1|WP_042318253.1|1738642_1740022_+|diaminobutyrate--2-oxoglutarate-transaminase
MSETQFAVTDHVQRTNADYLERQGWFESNVRSYPRKLPLVIQKAQGVWVTDVDGNQYLDCLAGAGTLALGHNHPEVVSSIQEFLASGLPMHTLDLTTPLKDAFCETLLAQLPGGENQYCLQFCGPSGADAVEAALKLAKTYTGRGGIISFSGGYHGMTHGALAVTGNTGPKDAVQNLMPGVQFLPYPHEYRCPLGIGGDAGVQALSHYFTAFIEDVERGMSLPAAVIVEAVQGEGGVNPAPASWLQTLREVTRRHGILLIVDEVQAGFARTGTLFAFEQAGIEPDIIVMSKAVGGGLPMAVLGIRREFDVWKPGTHTGTFRGNQMAMATGKTTIDILLRDKLAAQAAARGDWLKQQFTQLQTRFPCLGQVRGRGLMLGIEIVDERQPAQTGGAYPLDAELALAIQQHCFRQGLLLERGGRQGNVVRLLPPLIITEEQCRSVVERFERALIEAVAQIRHP
>NC_014500.1|WP_013317291.1|1740193_1742308_+|TonB-dependent-receptor
MKVRALYALTPLFLFAQANAADSTNKNDNEMVVTASRTDTEKKDSPQVVTIITKEQIEQQRQITSDSSQILSNLLPSMAPSRQKMSGSGETFRGRAPLILVDGIPQSNPLRPTGREMHTIDFAMVDRIEVIHGASASNGIGATGGVINIITRRPEPGSFNQHFSVETTSPTKVSSDSMSYKTTYGFSGREEYLDYLFSVSYEDQGLFLDGKDRPIGVDNTQGDLMDSRAYDIMAKVGYWLDNDQRIQFSLNRYQIKGKMNYLGVTGDRNNGIAATSVSGRPIGDAPMNSVWSTSATYDNYNLAGMKLNSLVYYQNYESLFGADNSGSFQDISIAPRNQLYDQSRVTSSRYGSKVALTKDDIWDDYLKATVGFDTLFDTGKQDLWLTKRVYAPQMKYTDLSPFMQFDIQPIESLKITTGVRYEYARLDIDSFRTVAASTVSAPNNSVDVQGGRLSFNKTLYNVGAVWTTPYQPLSLFANYSQGFGIPDVGRTLRSIRTAGQSVSMLQLEPIVTDNVETGFRIQKDPVEFELSYYRSTSKLGERVVDVNGTFQSERQKTRIDGIETSLGYKVNDDHRLKFGYSHIQGWFDNDGNGSLDSKLDGLNIPPDRLTASWSANWTPQWSSFIQANYAFDRIMDNRQMDFNGYVLFDAAVGYKLPKGKINLAVSNLFDKEYITYYSQSGNVSPLRYFSGRGRTVTLGYSVDF
>NC_014500.1|WP_013317292.1|1742414_1744277_+|IucA/IucC-family-siderophore-biosynthesis-protein
MNNRNHDVLSRMISEKAALHGLLNCLIKEFAIPEGYLRYEWPDEMKGIPPGAYFDGADWKGIPMMIGLPDQLQLFVMVDRRDTFGSQHYLSDVYLRQAQGDWQCPDFEPLVARLLAACEHIAGRKNPELYEQILQSQRLVSAIVSHNGRQRADAPLQHYLQSEQGLWFGHPSHPAPKARLWPAHLGQEQWAPEFQARAALHQFEVPVDGLHIGANGLTPQQVLDGFADQQPASPGHAIICMHPVQAQLFMQDARVQQLLRDNVIRDLGQSGRVASPTASIRTWFIDDHDYFIKGSLNVRITNCVRKNAWYELESTVLIDRLFRQLLDQHADTLGGLVAAAEPGVVSWSPAAAGELDSHWFREQTGGILRENFCRRTGAERSIMAGTLFARGVDLQPMIQTFLRTHYGEALDDNALLYWFDDYQTRLLRPVLSLFFNHGVVMEPHLQNSVLVHQQGRPQQVLLRDFEGVKLTDDLGIRYIDDDIHPRVRQSLLYSREQGWNRIMYCLFINHLSETILALSQGRPQLAPLMWRRVQQQLRAIQGELKQPSPELDALIAGHPVACKTNLKVRLAAEADRQASYVRLPSPWGHAVQHGSEVQHDERRHGDVRHEEARHGEVQHG

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Crispr_ID: NC_014500_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014500_2

3985144-3985530

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTGTAGGCAGCTTAGAAA	CRISPRCasFinder

6 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NC_014500_2

>merge|NC_014500|2|3985144-3985530|PILER-CR,CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAAGGAAACGCTGACACAGCCGGTGTTACCACCGCGTTCACTGCCGTATAGGCAGCTTAGAAACATCTGAAAACCTCCGGCCTTATCTAAATTCCGTTCACTGCCGTATAGGCAGCTTAGAAACCAGCGAAATAGCGGTTATCCTAATGCCCTTTGTTCACTGCCGTGTAGGCAGCTTAGAAATCCGTCGCCTCCGCGTTCGGTTCGCCAGGCTCGTTCACTGCCGCGTAGGCAGCTTAGAAAGTACCGCCCCGATTTAGTGGTGCTGGATGATAGTTCATGCCGAGTAGGCAGCTTAGAAAGCTGGAGCCGATTTGCGCCCAGACACCGCAATGTTCACTGCCGCACAGGCAGCGGTTGAC

>NC_014500|2|2|3985144-3985411|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGAAACGCTGACACAGCCGGTGTTACCACCGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CATCTGAAAACCTCCGGCCTTATCTAAATTCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCAGCGAAATAGCGGTTATCCTAATGCCCTTT
GTTCACTGCCGTGTAGGCAGCTTAGAAA	TCCGTCGCCTCCGCGTTCGGTTCGCCAGGCTC
GTTCACTGCCGCGTAGGCAGCTTAGAAA

>NC_014500|2|2|3985144-3985530|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGAAACGCTGACACAGCCGGTGTTACCACCGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CATCTGAAAACCTCCGGCCTTATCTAAATTCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCAGCGAAATAGCGGTTATCCTAATGCCCTTT
GTTCACTGCCGTGTAGGCAGCTTAGAAA	TCCGTCGCCTCCGCGTTCGGTTCGCCAGGCTC
GTTCACTGCCGCGTAGGCAGCTTAGAAA	GTACCGCCCCGATTTAGTGGTGCTGGATGAT
AGTTCATGCCGAGTAGGCAGCTTAGAAA	GCTGGAGCCGATTTGCGCCCAGACACCGCAAT
GTTCACTGCCGCACAGGCAGCGGTTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014500.1\|WP_033112057.1\|3978152_3979559_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NC_014500.1\|WP_013319355.1\|3982465_3983542_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NC_014500.1\|WP_013319369.1\|3998780_3999782_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_014500.1\|WP_033112060.1\|3987686_3988163_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_014500.1\|WP_013319368.1\|3995508_3998784_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NC_014500.1\|WP_033112058.1\|3984176_3984944_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NC_014500.1\|WP_013319367.1\|3994156_3995494_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_014500.1\|WP_013319356.1\|3983684_3983933_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NC_014500.1\|WP_013319362.1\|3989076_3990270_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NC_014500.1\|WP_013319359.1\|3985942_3987316_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NC_014500.1\|WP_013319353.1\|3979914_3980904_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NC_014500.1\|WP_033112061.1\|3993221_3994160_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_014500.1\|WP_033112054.1\|3976272_3977277_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NC_014500.1\|WP_013319365.1\|3992197_3993205_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_014500.1\|WP_013319354.1\|3981026_3982430_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193
NC_014500.1\|WP_013319346.1\|3973292_3973745_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NC_014500.1\|WP_033112055.1\|3977467_3977743_+\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NC_014500.1\|WP_013319364.1\|3991636_3992191_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NC_014500.1\|WP_013319361.1\|3988413_3989028_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NC_014500.1\|WP_013319348.1\|3974104_3976033_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NC_014500.1\|WP_033112057.1\|3978152_3979559_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	1.0166e-67
NC_014500.1\|WP_013319355.1\|3982465_3983542_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NC_014500.1\|WP_013319369.1\|3998780_3999782_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_014500.1\|WP_033112060.1\|3987686_3988163_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.64041e-34
NC_014500.1\|WP_013319368.1\|3995508_3998784_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_014500.1\|WP_033112058.1\|3984176_3984944_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	7.80586e-114
NC_014500.1\|WP_013319367.1\|3994156_3995494_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NC_014500.1\|WP_013319356.1\|3983684_3983933_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	1.18309e-12
NC_014500.1\|WP_013319362.1\|3989076_3990270_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_014500.1\|WP_013319359.1\|3985942_3987316_-\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NC_014500.1\|WP_013319353.1\|3979914_3980904_-\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NC_014500.1\|WP_033112061.1\|3993221_3994160_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.5591e-156
NC_014500.1\|WP_033112054.1\|3976272_3977277_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NC_014500.1\|WP_013319365.1\|3992197_3993205_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_014500.1\|WP_013319354.1\|3981026_3982430_+\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
NC_014500.1\|WP_013319346.1\|3973292_3973745_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	6.66495e-24
NC_014500.1\|WP_033112055.1\|3977467_3977743_+\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	1.97785e-23
NC_014500.1\|WP_013319364.1\|3991636_3992191_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	5.60898e-96
NC_014500.1\|WP_013319361.1\|3988413_3989028_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	9.19513e-40
NC_014500.1\|WP_013319348.1\|3974104_3976033_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.28337e-06

>NC_014500.1|WP_033112058.1|3984176_3984944_-|transporter-substrate-binding-domain-containing-protein
MKKRFSLILLLGLAGGASAASHLDQVQEQGVLKVCTTGDYKPYTSLRADGDYEGIDIAMAQSLAKSLGVKVEWVKTSWKTLMPDFQSGKCDIAMGGISVTLERQKKAFFSSMLDVDGKIPLVRCDDKDKYQTIAQINQPSVRVIEPAGGTNEAFVHAHLPNARLALHDNVTIFQQLVDKQADVMITDASEALFQQQRYPQLCAVNPSSPMQYGEKAYMLPRDDMSWKLYVDQWLHLAKSTGEYRKIISEWLGKAE
>NC_014500.1|WP_013319356.1|3983684_3983933_-|DUF1471-domain-containing-protein
MKSIKTIVAAVALATISFGTLAATEVQSVQSRDLGTVSATGRSLDDLQAQLSAKADAAGAKSFRIISAIGDDQIRGVAELYN
>NC_014500.1|WP_013319355.1|3982465_3983542_+|alanine-racemase
MKTATAVIDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGAVEAARAFSDADGYGVSRLSEALALRAAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQLAALEQARLPHPLTVWMKLDTGMHRLGVLPEKAEAFYARLSACANVVQPVNIMSHFCRADEPQAGTTQHQLDCFDAFVQDKPGRQSIAASGGILLWPQTHRDQIRPGIIQYGVSPLAQGDASQWQLKPAMTLTSHLIAVREHHADEPVGYGGTWTSPRATRMGVIAIGYGDGYPRDAKSGTPVWINGREVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGGPLPVEKVAAHSGISAYELITRLTSRTRLEYIG
>NC_014500.1|WP_013319354.1|3981026_3982430_+|replicative-DNA-helicase
MAEKKPTKPAESRDRQVEGLKLPPHSIEAEQSVLGGLMLDNERWDNVAERVCANDFFNRAHRLIFNEMQRLLEMSKPIDLITLSESLEQKGELESAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMIAVANEIADAGYDPQGRSSEDLLDLAESRVFQIAENRASKDEGPKSIDRILEDTVSRIEQLYQRPHDGVTGVSSGYQDLDKKTAGLQKSDLIIVAARPSMGKTTFAMNLCENAAMTQEKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGLLLEKRNMYIDDSSGLTPTEVRSRARRVFREHDGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVIALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>NC_014500.1|WP_013319353.1|3979914_3980904_-|quinone-oxidoreductase
MAKRIQFSDHGGPGVLEYVDYTPREPGLNDVQVENRAIGINFIDTYFRSGLYSPPSFPSGLGTEAAGVVVKAGANVKHLKVGDRVVYAQSALGAYSERHNVPADKVALLPDDISFEQAAASFLKGLTVYYLLRQTYEVKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDHKAELAKQAGAWATINYRKEDIVHRVLELTHEEKVSVVYDSVGKDTWEASLDCLKRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLFSYITTRQELELASRELFALIASGAIKVDVPDSQKFALEDARSAHRALESRSTQGSCLLIPHG
>NC_014500.1|WP_033112057.1|3978152_3979559_-|cytochrome-P450
MRSINRLPMPPTRGLLGHVHYLKRHDVHLQLLQWKERYGPFYRLRLGLTSAMVIADSEWIRTIMKARPDEFRRRSIIESVFQEAGLNGVFSSEGARWGHQRKLTEPMFQPAHLKYFYPSLRTITARLSARFARLAETGEVVSLVEEFKRYTVDITSLLAFGEDINTLEQGENPLSQSLRRMFPVINERCGSPIPLWRYIKRARDKQFDASLSLIDDHLNAFIDHQRERIRQNPQLLDAPENMLQIMLAEQQKDGTLTDADILANAFTLLLAGEDTTANTLTWMSFLLCSAPSMEENVVDECRQASGGEGGFLPWPLPRMPLLTAVMYESMRLKPVAPLLYLEPVKDTVIADFLIRKGTPLLLTLHANGFEETLFHHPHDFMPDRWLERGQASFSDLQPFGGGPRMCPGRSLALMEIKLGFHALCSGFRVEAQQPASDVMESFAFTVTPTGFYVRLHKRHQSDIARHEA
>NC_014500.1|WP_033112055.1|3977467_3977743_+|envelope-stress-response-protein-PspG
MLEIFFVIGFFIMLLVTGVSLLGVMAALVVASVVMLIGGLFAVAIKVLPWLLLAVVVVWLWRRFQGRPLSRMHHYAYRKKYTFRHRRGGEW
>NC_014500.1|WP_033112054.1|3976272_3977277_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MKEKESTETLRSNWHGRFSVAPMLDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGDYLAYSDEEHPLALQLGGSDPAALAQCAVLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADCVTAMRERVDIPVTVKTRIGIDDQDSYAFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPSLTLAINGGVKTLAEARQHLQHVDGVMVGREAYQNPGMLAQVDRELFGADSAAPDQADVVRAMYPYIERELSAGASLGHITRHMLGLFQGLPGARQWRRYLSENAHKPGADAAVVERALALVKLV
>NC_014500.1|WP_013319348.1|3974104_3976033_+|tetratricopeptide-repeat-protein
MRTFLLFLGVLLFSSSVLSAEPSHVNSTEQNQQITSLIGQLIQLHREQAKLEEQVKSNTNDIQALADKNKDVLKNEIATLSREISFTEKTVEIRIANIEKSSDYINKLYGVGSIIITLMIFGFGFIGYQRAKTDAKSAAETAMKEWIKKNENAVLSTIDEHTRAQEALLRDHTDSLLQELRDTVQNAQKDGEKLAGFVRKVQENKGATIEEKQFIPQEADKAAGSVHQEDKGPHAPSVKKARDLFNQGVSLGQQGKSDQAIQIYNQLITEFQDSDDPILQELVAKAMGNKGFRLGKKGELSDAIQTYDRLITRFKNSDSPVILQWIATAMLNKAINIGQQGQSDEEIQAYDQLIDKFKDSTTPAIQELVAKAMVNKGVRLGQQDKSDEAIHNYDQLIDMFEGSDSPAVLKQVAMAMLNKGVRLGQQGHADSAIQNYDLLIARFKDRDELELQEQVAKAMLNKGVKFGQQNAQDEAIQIYDQLIAQFNDHSELVFQELVIKAMLNKGVRLGKQGKQEEEIKIYDQLIARHKDSDEPVLLNQVAMAMVNKGISLRQHGQPEEAIKIYDQLIATFQDSEVPTIQERVVSAMFYKGFALGKQGQTDQAVQTYDRLITTFQSSDDPAIQAIVAKARKEHKTLTTSKE
>NC_014500.1|WP_013319346.1|3973292_3973745_-|DUF2384-domain-containing-protein
MTSLFTPTVRVQEHEGILAALSLSSSLVRAHEQISEGLPVSIIREAANKAQLDEGYLLRLVGVDRSTYHRRLKHPEKTWSVEQGARIYASVRVLDAAARLFDRDYVKAVDWLNQPAKALGGQPPAAMLKTPAGTEAVLDLIGRIGHGVIS
>NC_014500.1|WP_013319359.1|3985942_3987316_-|amino-acid-permease
MDTQQNSQLKRGLKNRHIQLIALGGAVGTGLFLGIAQTIRMAGPSVLLGYAIAGVIAFFIMRQLGEMVVEEPVAGSFSHFANQYWGNFAGFMSGWNYWVLYVLVSMAELSAVGIYIQYWWPAVPTWVSAAVFFVAINAINLSNVKVYGELEFWFSIIKVAAIIGMIVFGGYLLLSGTGGPDASVANLWQHGGFFPNGVSGMVMAMAVIMFSFGGLELVGITAAEADDPQKSIPRATNQVIYRILLFYVGALAVLLSLYPWQKVVEGGSPFVLIFHALDSNLVANVLNLVVLSAALSVYNSCVYCNSRMLFGLAQQGNAPRALLTVNRRGIPLVSLGVSALATALCVLLNYLMPGKAFELLMALVVSALVINWAMISITHLKFRQAKQRAQQETRFKSLGYPLTNILCLLFLAGILVIMAMTPGIQISVWLIPFWLLALAAGYAIKKRKGAVSALTAE
>NC_014500.1|WP_033112060.1|3987686_3988163_+|Lrp/AsnC-family-transcriptional-regulator
MYNIDDFDLKILTLLQANGRLTNQELSDLVGLSASQCSRRRIALEQAQLILGYHARLAPDAVGLEVMGLIEVRLINHTQECVDSFHQMLGEVDAIIDAYKTTGDADYMLKVAVADLHGLSALISQILARNKSVAHLKTSVVLNRLKENGLMAPATVLP
>NC_014500.1|WP_013319361.1|3988413_3989028_+|YitT-family-protein
MDNVITPQPVSHTLLEDILALLIGTLMVSFGVILLRQAGALTGGTAGMAFLLHYATHISFGTAFFLINLPFYYLAIRRMGWPFTIKTFCAVAMVSLFSDLHPLFIHFDHLQPIYATLFGNLIMGLGFIVLFRHRASLGGVNILALYLQDKSGIRAGKFQMAVDVTIVLTSLFVVSIPMLIASVLGAAALNLIIAMNHRPGRYTA
>NC_014500.1|WP_013319362.1|3989076_3990270_+|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDAYAGDPILSLMEQFKQDPRTDKVNLSIGLYYDGQGVIPQLQAVNAAETQMQAEPQQASVYLPMEGLSSYRSAVQTLLFGERHPALTSQRIATIQTLGGSGALKVGADFLKRYFPDSEVWVSDPTWENHIAIFSGAGFQVHTYPYFDADTLGVNVDGMISALKQLPPRSIVLLHPCCHNPTGSDLTHAEWDRVIEVLIKGELVPFLDIAYQGFGGGMDDDAYAIRAIAGTGLPALVSNSFSKIFSLYGERVGGLSVVCEDQEAANRVLGQLKATVRRNYSSPPNFGAQVVSRVLNDSTLNASWHEEVEAMRLRILEMRQTLVDELKKALPNRNFDYLLTQRGMFSYTGFSAAQVDRLREEFGVYLIASGRICVAGLNHHNVQRVAAAFAAVQ
>NC_014500.1|WP_013319364.1|3991636_3992191_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSGVQLLSALFAKLHRALGQRATGAIGVSFPDAGKTLGERLRLHGSVQELAALEQTGWLRGLRDYTAITEPLPVPAGVKHRTVRRVQVKSSAERLRRRAVNKGRMTVDEADARIPYTVEKRTSLPYLPLRSLSNGQTFLLFVEHGPLQDKPVAGAFSSYGLSAVATIPWF
>NC_014500.1|WP_013319365.1|3992197_3993205_-|type-I-F-CRISPR-associated-protein-Csy3
MAKVATTLKTASVLAFERKLANSDALMFAGNWQQEQWAPVTIQEKSVRGTISNRLKNAISSDPAKLDAEIQKANLQTVDVAALPFDADTLKVAFTLRVLGNLAQPSVCNDQDYQQALTEVINGYARDQGFGVLAARYAENIASGRFLWRNRIGAEAVQVVVTHDDKRWEFNGEDHSLRQFSQPNGALAELTHAIELALAGNDSAFFRVDAQVKLGNGQEVFPSQELVLDERARNGKSKILYQVNDVAAIHSQKIGNALRTVDDWHPEAAETGPIAVEPYGSVTSRGRAYRQPKDKMDFYTLLDNWVIKGSAPAVEQQHYVIATLIRGGVFGEKGE
>NC_014500.1|WP_033112061.1|3993221_3994160_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIILRRIQVENANAIAGHTYGFPAISHFLGFTHALSRQLQASHGLTLEGCGVVCHQHQLHAYGSGWNRSFALTRNPLTKEEKTAAFNEEGRMHLTVSLLIECHGMLPGEDGLEALKQQLQRLSLRQRLAGGLIVDIERVSIDDMPADDGSTRGLMRRLLPGFVLLDRTPLLQSHFQDLQQANPQAEMLDAWLDFAALKHQAVRSPDDEVNWQALPKPEGGYLVPLMTGYRAISPLYAPGEVEKTRDPSTPFCFAEAIYGVGEWRGAHRINDINRILWRYHYQHGTYRCLQTADDLNRAADDYDELEFNY
>NC_014500.1|WP_013319367.1|3994156_3995494_-|type-I-F-CRISPR-associated-protein-Csy1
MEEGELRQFIVSYIENRKQAKLDAFDKAADKQRAALSGEALAEAELTLAQARREIEQAYEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFSTKPAADSAVLSTASLAQPAIDAVGNAAALDVAKLLQTEHHGDSLLAALQRGDHRALEALAESPQQLTQWLAGFGQVLTDKQPSSHKLAKQIYFPLGDGEYHLLSPLYSSSLSQALDQRLTAVRFGEQAKAIREARRENRWHDEVLVSYPGVAVQNMGGTKPQNISALNSARSGRSYLLSSAPPQWRSQLKPPVEHDSIFRERGEVDALTYADRREMRQFLLSVKEVENNREIRNQRRRYLDQLIDTLFGYVATVQNLRPAGWSVDSRLKRHLQLWLDPLRGLQDTDFLRERDAGDWKEQVAHEFGRWLNARLQHEKLIFGEVERREWSTAALFKQRLRETERALKGELA
>NC_014500.1|WP_013319368.1|3995508_3998784_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRVLDQFAERKGERTWQTAITEEGLKTLRQLLRKTARRNTAVACHWIRSANHTELLWIVGNLRRFNRQGSVPTNRTERDILRSNDENPWHSAEAFSLLAAIAGLFHDIGKANRLFQAGLRGNGPRSQPYRHEWVSLRLFQAFVGERDDTGWLTALGGISPDDDTALLARLQQDDPESWASPFRDLPPLAQVVGWLIVSHHHLPLFQTWEKPDGDSVSPDLACAERWLTGQLSPRWNAVNHLNFDGDDTQWEQVWQFPHGTPLQSRVWCEKARKFAARALKLPSLPTFGHLDQRLTAHLARLVLMLADHHYSSSPATSGWQDPRYPVWANTDRQSGTLKQQLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSADARFRWQDKAFDQVCAIREQTARHGFFGVNMASTGRGKTLANARIMYGLADESRGCRFSVALGLRTLTLQTGDALRQRLTLDEDDLAVLIGSQAVQELHERRQQAERAAQTGSESAEALFAEHQYVSYQGSLDDGRLKTWLEKSPTLHQLLSAPVLVTTIDHLMPATESLRGGHQIAPMLRLLTADLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFEAYLDGRAAWQQAYGEPDTPLNVCCGWFDEFDSQCQPFADTQAFSERHQAFVAGRIDKLQQQELTLRWAEIEPVASPAPDVDAVCRAVAQTLHQRLFRLHEQHHQTHPSGKTVSLGLIRMANINPLAAVARALMVMPSPPDCCVHYCVYHSQHPLVMRSHIEARLDAALMRKHPDALWQVTEIREAIEQQPQRHHLFVVLATSVAEVGRDHDYDWAIAEPSSMRSLIQLAGRILRHRQRDEFVPTSPNFYLLSHNVRALKGEQVAFCRPGFESNDRLLTSHDLHQLLKPEDYRAISAVPRIQPPVLKKPLTLVTLEHAALAGKLFGPKGTSPLQATAVLWWRKPLHWNGELQRRTRFRQSEQQQRYCLWLEDESDALRFMVPDDGPSGWKASEAIRPVTLTLAEGVSGWVEMDCTARYSQLAEEKQWELAWVSARFGEISLSKRDSEWFWHPLLGVFGEQS
>NC_014500.1|WP_013319369.1|3998780_3999782_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNVFSPSDLKTILHSKRANIYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMVGFCGGGGTPLFAANEAEVAVSWLSPQSEYRPTEYLQDWVSFWFDEEQRLAAAIAFQQVRIGQIRQHWLEGRLARESRFAIKPEQVEALLNRYQQGLSGCRTSNDVLVQEAMMTKALYRLAANAVSYGEFTRAKRGGGTDLANRFLDHGNYLAYGVAAVALWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMEGEEEQDFRQRCLTAFRQAEALDVIIDSLQQVAQQRSQVVKTGSQVAR

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Crispr_ID: NC_014500_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014500_3

3990760-3991507

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTACTCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTACACGGCAGTGAAC	CRT
GTTCACTGCCGTGTAGGCAGCTTAGAAA	PILER-CR

12 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NC_014500_3

>merge|NC_014500|3|3990760-3991507|CRISPRCasFinder,CRT,PILER-CR
GTCAAACGCTGCCTGTGCGGCAGTGAACACATAAGGATCGTGGGGTGGCCCAATCGGTATTTTCTAAGCTGCCTACTCGGCAGTGAACGTTTGCCCTGGCCTGCTGTTCGGCGGCCATCATTTCTAAGCTGCCTACGCGGCAGTGAACCCGAAAGATGTATGGGGTGAATGGGACCGTTCTTTCTAAGCTGCCTACACGGCAGTGAACCCCGTCTACGCGTTCACGCACTGGGAGTCGCGTTTCTAAGCTGCCTACACGGCAGTGAACGAGCCGCCGACAGACAGGTTATCGGGCAGGCTTTTCTAAGCTGCCTACACGGCAGTGAACGACATCATTTACAGCGGCTCACTCAGCAGATCTTTCTAAGCTGCCTACACGGCAGTGAACAGGTGGCCGGTAACGTGGCATGGGTGCTTGATTTTCTAAGCTGCCTACACGGCAGTGAACGTGTCGTAGTCCACTCGTTGCTGAACGCGCTCTTTCTAAGCTGCCTACACGGCAGTGAACCCCATTGATGGCGAGCTCACAGCTCTCCCCAATTTCTAAGCTGCCTACACGGCAGTGAACCCTCAGCAGGTGGATTGTGATAGTTACCTGCTTTTCTAAGCTGCCTACACGGCAGTGAACGCCACGCTCAGCAGGGCTGAGTCGGCGATAGATTTCTAAGCTGCCTACACGGCAGTGAACATCCAGCGTATCGAGCGTGTGGGTGTAATCCGTTTCTAAGCTGCCTACACGGCAGTGAAC

>NC_014500|3|3|3990760-3991507|CRISPRCasFinder
GTCAAACGCTGCCTGTGCGGCAGTGAAC	ACATAAGGATCGTGGGGTGGCCCAATCGGTAT
TTTCTAAGCTGCCTACTCGGCAGTGAAC	GTTTGCCCTGGCCTGCTGTTCGGCGGCCATCA
TTTCTAAGCTGCCTACGCGGCAGTGAAC	CCGAAAGATGTATGGGGTGAATGGGACCGTTC
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCCGTCTACGCGTTCACGCACTGGGAGTCGCG
TTTCTAAGCTGCCTACACGGCAGTGAAC	GAGCCGCCGACAGACAGGTTATCGGGCAGGCT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GACATCATTTACAGCGGCTCACTCAGCAGATC
TTTCTAAGCTGCCTACACGGCAGTGAAC	AGGTGGCCGGTAACGTGGCATGGGTGCTTGAT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GTGTCGTAGTCCACTCGTTGCTGAACGCGCTC
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCCATTGATGGCGAGCTCACAGCTCTCCCCAA
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCTCAGCAGGTGGATTGTGATAGTTACCTGCT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GCCACGCTCAGCAGGGCTGAGTCGGCGATAGA
TTTCTAAGCTGCCTACACGGCAGTGAAC	ATCCAGCGTATCGAGCGTGTGGGTGTAATCCG
TTTCTAAGCTGCCTACACGGCAGTGAAC

>NC_014500|3|2|3990760-3991507|CRT
GTCAAACGCTGCCTGTGCGGCAGTGAAC	ACATAAGGATCGTGGGGTGGCCCAATCGGTAT
TTTCTAAGCTGCCTACTCGGCAGTGAAC	GTTTGCCCTGGCCTGCTGTTCGGCGGCCATCA
TTTCTAAGCTGCCTACGCGGCAGTGAAC	CCGAAAGATGTATGGGGTGAATGGGACCGTTC
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCCGTCTACGCGTTCACGCACTGGGAGTCGCG
TTTCTAAGCTGCCTACACGGCAGTGAAC	GAGCCGCCGACAGACAGGTTATCGGGCAGGCT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GACATCATTTACAGCGGCTCACTCAGCAGATC
TTTCTAAGCTGCCTACACGGCAGTGAAC	AGGTGGCCGGTAACGTGGCATGGGTGCTTGAT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GTGTCGTAGTCCACTCGTTGCTGAACGCGCTC
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCCATTGATGGCGAGCTCACAGCTCTCCCCAA
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCTCAGCAGGTGGATTGTGATAGTTACCTGCT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GCCACGCTCAGCAGGGCTGAGTCGGCGATAGA
TTTCTAAGCTGCCTACACGGCAGTGAAC	ATCCAGCGTATCGAGCGTGTGGGTGTAATCCG
TTTCTAAGCTGCCTACACGGCAGTGAAC

>NC_014500|3|3|3990820-3991507|PILER-CR
TTTCTAAGCTGCCTACTCGGCAGTGAAC	GTTTGCCCTGGCCTGCTGTTCGGCGGCCATCA
TTTCTAAGCTGCCTACGCGGCAGTGAAC	CCGAAAGATGTATGGGGTGAATGGGACCGTTC
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCCGTCTACGCGTTCACGCACTGGGAGTCGCG
TTTCTAAGCTGCCTACACGGCAGTGAAC	GAGCCGCCGACAGACAGGTTATCGGGCAGGCT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GACATCATTTACAGCGGCTCACTCAGCAGATC
TTTCTAAGCTGCCTACACGGCAGTGAAC	AGGTGGCCGGTAACGTGGCATGGGTGCTTGAT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GTGTCGTAGTCCACTCGTTGCTGAACGCGCTC
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCCATTGATGGCGAGCTCACAGCTCTCCCCAA
TTTCTAAGCTGCCTACACGGCAGTGAAC	CCTCAGCAGGTGGATTGTGATAGTTACCTGCT
TTTCTAAGCTGCCTACACGGCAGTGAAC	GCCACGCTCAGCAGGGCTGAGTCGGCGATAGA
TTTCTAAGCTGCCTACACGGCAGTGAAC	ATCCAGCGTATCGAGCGTGTGGGTGTAATCCG
TTTCTAAGCTGCCTACACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014500.1\|WP_033112057.1\|3978152_3979559_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NC_014500.1\|WP_013319355.1\|3982465_3983542_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NC_014500.1\|WP_013319369.1\|3998780_3999782_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_014500.1\|WP_033112060.1\|3987686_3988163_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_014500.1\|WP_013319368.1\|3995508_3998784_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NC_014500.1\|WP_033112058.1\|3984176_3984944_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NC_014500.1\|WP_013319376.1\|4007474_4007894_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NC_014500.1\|WP_013319356.1\|3983684_3983933_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NC_014500.1\|WP_013319365.1\|3992197_3993205_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_014500.1\|WP_013319353.1\|3979914_3980904_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NC_014500.1\|WP_033112062.1\|4004244_4005855_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_014500.1\|WP_013319359.1\|3985942_3987316_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NC_014500.1\|WP_033112061.1\|3993221_3994160_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_014500.1\|WP_013319373.1\|4001575_4003267_-\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_014500.1\|WP_013319362.1\|3989076_3990270_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NC_014500.1\|WP_158305125.1\|4006183_4007464_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_014500.1\|WP_013319361.1\|3988413_3989028_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NC_014500.1\|WP_013319367.1\|3994156_3995494_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_014500.1\|WP_013319364.1\|3991636_3992191_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NC_014500.1\|WP_013319354.1\|3981026_3982430_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193

Protein	Function_ID	Function_description	E-value
NC_014500.1\|WP_033112057.1\|3978152_3979559_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	1.0166e-67
NC_014500.1\|WP_013319355.1\|3982465_3983542_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NC_014500.1\|WP_013319369.1\|3998780_3999782_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_014500.1\|WP_033112060.1\|3987686_3988163_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.64041e-34
NC_014500.1\|WP_013319368.1\|3995508_3998784_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_014500.1\|WP_033112058.1\|3984176_3984944_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	7.80586e-114
NC_014500.1\|WP_013319376.1\|4007474_4007894_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	9.21736e-58
NC_014500.1\|WP_013319356.1\|3983684_3983933_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	1.18309e-12
NC_014500.1\|WP_013319365.1\|3992197_3993205_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_014500.1\|WP_013319353.1\|3979914_3980904_-\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NC_014500.1\|WP_033112062.1\|4004244_4005855_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.7546e-59
NC_014500.1\|WP_013319359.1\|3985942_3987316_-\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NC_014500.1\|WP_033112061.1\|3993221_3994160_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.5591e-156
NC_014500.1\|WP_013319373.1\|4001575_4003267_-\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.35699e-101
NC_014500.1\|WP_013319362.1\|3989076_3990270_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_014500.1\|WP_158305125.1\|4006183_4007464_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.00618e-45
NC_014500.1\|WP_013319361.1\|3988413_3989028_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	9.19513e-40
NC_014500.1\|WP_013319367.1\|3994156_3995494_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NC_014500.1\|WP_013319364.1\|3991636_3992191_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	5.60898e-96
NC_014500.1\|WP_013319354.1\|3981026_3982430_+\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0

>NC_014500.1|WP_013319362.1|3989076_3990270_+|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDAYAGDPILSLMEQFKQDPRTDKVNLSIGLYYDGQGVIPQLQAVNAAETQMQAEPQQASVYLPMEGLSSYRSAVQTLLFGERHPALTSQRIATIQTLGGSGALKVGADFLKRYFPDSEVWVSDPTWENHIAIFSGAGFQVHTYPYFDADTLGVNVDGMISALKQLPPRSIVLLHPCCHNPTGSDLTHAEWDRVIEVLIKGELVPFLDIAYQGFGGGMDDDAYAIRAIAGTGLPALVSNSFSKIFSLYGERVGGLSVVCEDQEAANRVLGQLKATVRRNYSSPPNFGAQVVSRVLNDSTLNASWHEEVEAMRLRILEMRQTLVDELKKALPNRNFDYLLTQRGMFSYTGFSAAQVDRLREEFGVYLIASGRICVAGLNHHNVQRVAAAFAAVQ
>NC_014500.1|WP_013319361.1|3988413_3989028_+|YitT-family-protein
MDNVITPQPVSHTLLEDILALLIGTLMVSFGVILLRQAGALTGGTAGMAFLLHYATHISFGTAFFLINLPFYYLAIRRMGWPFTIKTFCAVAMVSLFSDLHPLFIHFDHLQPIYATLFGNLIMGLGFIVLFRHRASLGGVNILALYLQDKSGIRAGKFQMAVDVTIVLTSLFVVSIPMLIASVLGAAALNLIIAMNHRPGRYTA
>NC_014500.1|WP_033112060.1|3987686_3988163_+|Lrp/AsnC-family-transcriptional-regulator
MYNIDDFDLKILTLLQANGRLTNQELSDLVGLSASQCSRRRIALEQAQLILGYHARLAPDAVGLEVMGLIEVRLINHTQECVDSFHQMLGEVDAIIDAYKTTGDADYMLKVAVADLHGLSALISQILARNKSVAHLKTSVVLNRLKENGLMAPATVLP
>NC_014500.1|WP_013319359.1|3985942_3987316_-|amino-acid-permease
MDTQQNSQLKRGLKNRHIQLIALGGAVGTGLFLGIAQTIRMAGPSVLLGYAIAGVIAFFIMRQLGEMVVEEPVAGSFSHFANQYWGNFAGFMSGWNYWVLYVLVSMAELSAVGIYIQYWWPAVPTWVSAAVFFVAINAINLSNVKVYGELEFWFSIIKVAAIIGMIVFGGYLLLSGTGGPDASVANLWQHGGFFPNGVSGMVMAMAVIMFSFGGLELVGITAAEADDPQKSIPRATNQVIYRILLFYVGALAVLLSLYPWQKVVEGGSPFVLIFHALDSNLVANVLNLVVLSAALSVYNSCVYCNSRMLFGLAQQGNAPRALLTVNRRGIPLVSLGVSALATALCVLLNYLMPGKAFELLMALVVSALVINWAMISITHLKFRQAKQRAQQETRFKSLGYPLTNILCLLFLAGILVIMAMTPGIQISVWLIPFWLLALAAGYAIKKRKGAVSALTAE
>NC_014500.1|WP_033112058.1|3984176_3984944_-|transporter-substrate-binding-domain-containing-protein
MKKRFSLILLLGLAGGASAASHLDQVQEQGVLKVCTTGDYKPYTSLRADGDYEGIDIAMAQSLAKSLGVKVEWVKTSWKTLMPDFQSGKCDIAMGGISVTLERQKKAFFSSMLDVDGKIPLVRCDDKDKYQTIAQINQPSVRVIEPAGGTNEAFVHAHLPNARLALHDNVTIFQQLVDKQADVMITDASEALFQQQRYPQLCAVNPSSPMQYGEKAYMLPRDDMSWKLYVDQWLHLAKSTGEYRKIISEWLGKAE
>NC_014500.1|WP_013319356.1|3983684_3983933_-|DUF1471-domain-containing-protein
MKSIKTIVAAVALATISFGTLAATEVQSVQSRDLGTVSATGRSLDDLQAQLSAKADAAGAKSFRIISAIGDDQIRGVAELYN
>NC_014500.1|WP_013319355.1|3982465_3983542_+|alanine-racemase
MKTATAVIDRQALRHNLQRIRQMAPQSRLIAIVKANAYGHGAVEAARAFSDADGYGVSRLSEALALRAAGITKPILLLEGFFAADELPLLAEHQLETAVHCEEQLAALEQARLPHPLTVWMKLDTGMHRLGVLPEKAEAFYARLSACANVVQPVNIMSHFCRADEPQAGTTQHQLDCFDAFVQDKPGRQSIAASGGILLWPQTHRDQIRPGIIQYGVSPLAQGDASQWQLKPAMTLTSHLIAVREHHADEPVGYGGTWTSPRATRMGVIAIGYGDGYPRDAKSGTPVWINGREVPLSGRVSMDMITVDLGPNAQDKVGDEVILWGGPLPVEKVAAHSGISAYELITRLTSRTRLEYIG
>NC_014500.1|WP_013319354.1|3981026_3982430_+|replicative-DNA-helicase
MAEKKPTKPAESRDRQVEGLKLPPHSIEAEQSVLGGLMLDNERWDNVAERVCANDFFNRAHRLIFNEMQRLLEMSKPIDLITLSESLEQKGELESAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMIAVANEIADAGYDPQGRSSEDLLDLAESRVFQIAENRASKDEGPKSIDRILEDTVSRIEQLYQRPHDGVTGVSSGYQDLDKKTAGLQKSDLIIVAARPSMGKTTFAMNLCENAAMTQEKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGLLLEKRNMYIDDSSGLTPTEVRSRARRVFREHDGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVIALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIILGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>NC_014500.1|WP_013319353.1|3979914_3980904_-|quinone-oxidoreductase
MAKRIQFSDHGGPGVLEYVDYTPREPGLNDVQVENRAIGINFIDTYFRSGLYSPPSFPSGLGTEAAGVVVKAGANVKHLKVGDRVVYAQSALGAYSERHNVPADKVALLPDDISFEQAAASFLKGLTVYYLLRQTYEVKPGEVFLFHAAAGGVGLIACQWAKALGAKLIGTVGSDHKAELAKQAGAWATINYRKEDIVHRVLELTHEEKVSVVYDSVGKDTWEASLDCLKRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLFSYITTRQELELASRELFALIASGAIKVDVPDSQKFALEDARSAHRALESRSTQGSCLLIPHG
>NC_014500.1|WP_033112057.1|3978152_3979559_-|cytochrome-P450
MRSINRLPMPPTRGLLGHVHYLKRHDVHLQLLQWKERYGPFYRLRLGLTSAMVIADSEWIRTIMKARPDEFRRRSIIESVFQEAGLNGVFSSEGARWGHQRKLTEPMFQPAHLKYFYPSLRTITARLSARFARLAETGEVVSLVEEFKRYTVDITSLLAFGEDINTLEQGENPLSQSLRRMFPVINERCGSPIPLWRYIKRARDKQFDASLSLIDDHLNAFIDHQRERIRQNPQLLDAPENMLQIMLAEQQKDGTLTDADILANAFTLLLAGEDTTANTLTWMSFLLCSAPSMEENVVDECRQASGGEGGFLPWPLPRMPLLTAVMYESMRLKPVAPLLYLEPVKDTVIADFLIRKGTPLLLTLHANGFEETLFHHPHDFMPDRWLERGQASFSDLQPFGGGPRMCPGRSLALMEIKLGFHALCSGFRVEAQQPASDVMESFAFTVTPTGFYVRLHKRHQSDIARHEA
>NC_014500.1|WP_013319364.1|3991636_3992191_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSGVQLLSALFAKLHRALGQRATGAIGVSFPDAGKTLGERLRLHGSVQELAALEQTGWLRGLRDYTAITEPLPVPAGVKHRTVRRVQVKSSAERLRRRAVNKGRMTVDEADARIPYTVEKRTSLPYLPLRSLSNGQTFLLFVEHGPLQDKPVAGAFSSYGLSAVATIPWF
>NC_014500.1|WP_013319365.1|3992197_3993205_-|type-I-F-CRISPR-associated-protein-Csy3
MAKVATTLKTASVLAFERKLANSDALMFAGNWQQEQWAPVTIQEKSVRGTISNRLKNAISSDPAKLDAEIQKANLQTVDVAALPFDADTLKVAFTLRVLGNLAQPSVCNDQDYQQALTEVINGYARDQGFGVLAARYAENIASGRFLWRNRIGAEAVQVVVTHDDKRWEFNGEDHSLRQFSQPNGALAELTHAIELALAGNDSAFFRVDAQVKLGNGQEVFPSQELVLDERARNGKSKILYQVNDVAAIHSQKIGNALRTVDDWHPEAAETGPIAVEPYGSVTSRGRAYRQPKDKMDFYTLLDNWVIKGSAPAVEQQHYVIATLIRGGVFGEKGE
>NC_014500.1|WP_033112061.1|3993221_3994160_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIILRRIQVENANAIAGHTYGFPAISHFLGFTHALSRQLQASHGLTLEGCGVVCHQHQLHAYGSGWNRSFALTRNPLTKEEKTAAFNEEGRMHLTVSLLIECHGMLPGEDGLEALKQQLQRLSLRQRLAGGLIVDIERVSIDDMPADDGSTRGLMRRLLPGFVLLDRTPLLQSHFQDLQQANPQAEMLDAWLDFAALKHQAVRSPDDEVNWQALPKPEGGYLVPLMTGYRAISPLYAPGEVEKTRDPSTPFCFAEAIYGVGEWRGAHRINDINRILWRYHYQHGTYRCLQTADDLNRAADDYDELEFNY
>NC_014500.1|WP_013319367.1|3994156_3995494_-|type-I-F-CRISPR-associated-protein-Csy1
MEEGELRQFIVSYIENRKQAKLDAFDKAADKQRAALSGEALAEAELTLAQARREIEQAYEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFSTKPAADSAVLSTASLAQPAIDAVGNAAALDVAKLLQTEHHGDSLLAALQRGDHRALEALAESPQQLTQWLAGFGQVLTDKQPSSHKLAKQIYFPLGDGEYHLLSPLYSSSLSQALDQRLTAVRFGEQAKAIREARRENRWHDEVLVSYPGVAVQNMGGTKPQNISALNSARSGRSYLLSSAPPQWRSQLKPPVEHDSIFRERGEVDALTYADRREMRQFLLSVKEVENNREIRNQRRRYLDQLIDTLFGYVATVQNLRPAGWSVDSRLKRHLQLWLDPLRGLQDTDFLRERDAGDWKEQVAHEFGRWLNARLQHEKLIFGEVERREWSTAALFKQRLRETERALKGELA
>NC_014500.1|WP_013319368.1|3995508_3998784_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRVLDQFAERKGERTWQTAITEEGLKTLRQLLRKTARRNTAVACHWIRSANHTELLWIVGNLRRFNRQGSVPTNRTERDILRSNDENPWHSAEAFSLLAAIAGLFHDIGKANRLFQAGLRGNGPRSQPYRHEWVSLRLFQAFVGERDDTGWLTALGGISPDDDTALLARLQQDDPESWASPFRDLPPLAQVVGWLIVSHHHLPLFQTWEKPDGDSVSPDLACAERWLTGQLSPRWNAVNHLNFDGDDTQWEQVWQFPHGTPLQSRVWCEKARKFAARALKLPSLPTFGHLDQRLTAHLARLVLMLADHHYSSSPATSGWQDPRYPVWANTDRQSGTLKQQLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSADARFRWQDKAFDQVCAIREQTARHGFFGVNMASTGRGKTLANARIMYGLADESRGCRFSVALGLRTLTLQTGDALRQRLTLDEDDLAVLIGSQAVQELHERRQQAERAAQTGSESAEALFAEHQYVSYQGSLDDGRLKTWLEKSPTLHQLLSAPVLVTTIDHLMPATESLRGGHQIAPMLRLLTADLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFEAYLDGRAAWQQAYGEPDTPLNVCCGWFDEFDSQCQPFADTQAFSERHQAFVAGRIDKLQQQELTLRWAEIEPVASPAPDVDAVCRAVAQTLHQRLFRLHEQHHQTHPSGKTVSLGLIRMANINPLAAVARALMVMPSPPDCCVHYCVYHSQHPLVMRSHIEARLDAALMRKHPDALWQVTEIREAIEQQPQRHHLFVVLATSVAEVGRDHDYDWAIAEPSSMRSLIQLAGRILRHRQRDEFVPTSPNFYLLSHNVRALKGEQVAFCRPGFESNDRLLTSHDLHQLLKPEDYRAISAVPRIQPPVLKKPLTLVTLEHAALAGKLFGPKGTSPLQATAVLWWRKPLHWNGELQRRTRFRQSEQQQRYCLWLEDESDALRFMVPDDGPSGWKASEAIRPVTLTLAEGVSGWVEMDCTARYSQLAEEKQWELAWVSARFGEISLSKRDSEWFWHPLLGVFGEQS
>NC_014500.1|WP_013319369.1|3998780_3999782_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNVFSPSDLKTILHSKRANIYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMVGFCGGGGTPLFAANEAEVAVSWLSPQSEYRPTEYLQDWVSFWFDEEQRLAAAIAFQQVRIGQIRQHWLEGRLARESRFAIKPEQVEALLNRYQQGLSGCRTSNDVLVQEAMMTKALYRLAANAVSYGEFTRAKRGGGTDLANRFLDHGNYLAYGVAAVALWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMEGEEEQDFRQRCLTAFRQAEALDVIIDSLQQVAQQRSQVVKTGSQVAR
>NC_014500.1|WP_013319373.1|4001575_4003267_-|MCP-four-helix-bundle-domain-containing-protein
MRLSDWRIGYRLGAGFAVLAVMLVVVGILSITRLSSFHDSARDIVQEIYPQTVDANTLIDNVNEGVRVFQQLLLVSGDDRIKAVSDQIPPISKEITRLMDALEKHANESNDARNQQLIGDIRLIRAKFLESGQKVIALVKANNREEALNEFNQRLNPAQREYRNAVRQLVDYQDNAMMSTVDAMSATYHDIRLVLLAILGIGVVLSVWVAMAITRSVTQPIQQALVMADRVSQGDLTSQISSNRKDEAGLLLQALDHMNASLRQIVGQVRDGAEAISTAASQIAAGNQDLSSRTEEQASSLEQTAASMEELVSTIKNTAENTQQATSIANQASSAAHRSGEVMLSVTTKMRGIREASMRMAEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKELIDDSVDKIQEGMQLVDTAESTMDGLTGHVKDVHSIINEISQASHEQSDGISQINIAVGQIDTTTQQNAALVEESASAALSLQSQASLLAEAVSAFRLTPQGGNGAPSPVRQPTALSHALPSARPNVTEKRAATTAGTNDDWTSF
>NC_014500.1|WP_033112062.1|4004244_4005855_+|GGDEF-domain-containing-protein
MRIKKLIQINLLHLILFISLASMFVTLLNSYLTFYHVQKKLLIEQAVKVNSSYSSKLSVTVDNFFSMSEEQLSYSAKLIASHIQSGNLRPLQAELQRIHQLSHAFNSMVVVTEHGQIIAASPTSLNLTGITLTSNRHLTTLREKRFFISAPYTSLSGNYIIFISYPIADDVGNYLGYIGGSLYLNSRRILNEFMNTQFSNDSFNTYVIDKEGTIIYHRDTGQIGKKINDSHILSSIANQDKGSFMMPDEQGILSPASFIRTQKAGWIIITQQSFHSLEEALNDVMISVLKQGTPLGILTLLALSILAYYIAKPLRQLSKSASSMDQLGVISKIRAVKAWYLEVEQLKRVLLMGTVLLHKRIGRLSSEAHTDPLSGMLNRRGMQESMEEIRSEYKKISVIAIDIDHFKVINDSFGHDVGDEVIRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANTVYMPGYRHHQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVVEYLSDDISLAQH
>NC_014500.1|WP_158305125.1|4006183_4007464_+|diguanylate-cyclase
MLFFISHTAASFSIPQDISRQNQMLLGIIDSLFVPLYFLTLQVVIRFKNRYYPIRRTVILCAPIVATSILQSLVYSGLLYSLDNGHYVVASLDWATEQIATGVLLFLILTGFMAYKRTGAPLFKTIQRYKADAVLIVASVLVQILLIQSSTLEQTILLLIPLALVSIKLNFYPSALLSGLTLSIVYTLISTRYYGDYWKDSSLIYIENLISYRLNTLISCLVIMLICEKNYAKRFAINIIKRKVYTDYLSGLYNRKFLWKKAREIPKETPLSVLICDIDNFKHINDTYGHGNGDKIIQAVSHTIKTHISPHDLAVRWGGEEFLILSRSPDEQYLDTLSARILDSIRQLQITLDGNIARHVTVSIGGCNFEYQQSPDFVMAIETADKLLYQSKQAGKDRATLRTLTQDTNVSASFAPVLPPAEHEKL
>NC_014500.1|WP_013319376.1|4007474_4007894_-|YjbQ-family-protein
MWKQYDIRLKPRSRGFHLITDEVLAQVMDLCEVRVGLLHVFICHTSASLTLNENADPTVRQDFESAFNHLVPEDEPYYRHTYEGSDDMPAHLKSSLLGSSLMLPVRNGRLHVGTWQGIYLCEHRNHGGSRSLVATLQGE

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Crispr_ID: NC_014500_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014500_4

4000264-4001551

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGAGTAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGAGTAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGAGTAGGCAGCTTAGAAA	CRT

21 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NC_014500_4

>merge|NC_014500|4|4000264-4001551|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGAGTAGGCAGCTTAGAAAATGACTGTTGCGGCACCAGGGTCAGACGCAAGGTTCACTGCCGAGTAGGCAGCTTAGAAATGACCGCCGCCGATGGTTTCGATTATCGAATCGTTCACTGCCGAGTAGGCAGCTTAGAAAAGGAGCCAAGCCAGTCACTGGACTACCGGACGGTTCACTGCCGAGTAGGCAGCTTAGAAAGTTTGCTTGCTCAATCGCAGACAGTAGCGGGTGTTCACTGCCGAGTAGGCAGCTTAGAAAAGCAGAACCGGCACGCACCGCGCCGGTATTGAGTTCACTGCCGAGTAGGCAGCTTAGAAAAGAAATATTGATGGCGCGCGACTCCTTGGGGAGTTCACTGCCGAGTAGGCAGCTTAGAAATGTTAACCCAGGTCCTCAAATTCATCATTGGTGTTCACTGCCGAGTAGGCAGCTTAGAAATAAACGCCACTGGCTCTTTCGCCGCCCTGTCAGTTCACTGCCGAGTAGGCAGCTTAGAAATCAGCCAACTCCATGCGATTACGTGGACGAGCGTTCACTGCCGAGTAGGCAGCTTAGAAATTCGTCATACCACGCGGATACATCATCGCCGTGTTCACTGCCGAGTAGGCAGCTTAGAAAACCGCCCGTCGGCACCTGGGCGACGAACTTTAGTTCACTGCCGAGTAGGCAGCTTAGAAATATTATCCGGCTTTGGGATGTACACCGGCTTCGTTCACTGCCGAGTAGGCAGCTTAGAAATCAGGCGGAAGAACGTCGGGATATCTCGTCAAGTTCACTGCCGAGTAGGCAGCTTAGAAAGCGGGAACTAACACCACTCAGTTGGCGACAACGTTCACTGCCGAGTAGGCAGCTTAGAAAGTACTGAGCCGAAAGAACTCTTTGGCTTAATGGTTCACTGCCGAGTAGGCAGCTTAGAAAAAGCGGAACATCCCCGTTCCACCACATGCGCAGTTCACTGCCGAGTAGGCAGCTTAGAAAATCACCAGCGCGTCGAGGTTGTCAAAGTCGCCGTTCACTGCCGAGTAGGCAGCTTAGAAAAATGAGCGCAAGCTGATTACTGGGTATGCAAAGTTCACTGCCGAGTAGGCAGCTTAGAAAAACTGGTCATGAAGCCGGTCAAGGAAGGGCGAGTTCACTGCCGAGTAGGCAGCTTAGAAAGTGGCGCTCGATGCCGTGGCGCAGTGCGTCGGGTTCACTGCCGAGTAGGCAGCTTAGAAACTCAACTGAGCGAGTTATGTGACCTGCAAAATGTTCACTGCCGCACAGGCAGTATCCCTC

>NC_014500|4|4|4000264-4001491|PILER-CR
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ATGACTGTTGCGGCACCAGGGTCAGACGCAAG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TGACCGCCGCCGATGGTTTCGATTATCGAATC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGGAGCCAAGCCAGTCACTGGACTACCGGACG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTTTGCTTGCTCAATCGCAGACAGTAGCGGGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGCAGAACCGGCACGCACCGCGCCGGTATTGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGAAATATTGATGGCGCGCGACTCCTTGGGGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TGTTAACCCAGGTCCTCAAATTCATCATTGGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TAAACGCCACTGGCTCTTTCGCCGCCCTGTCA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TCAGCCAACTCCATGCGATTACGTGGACGAGC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TTCGTCATACCACGCGGATACATCATCGCCGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ACCGCCCGTCGGCACCTGGGCGACGAACTTTA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TATTATCCGGCTTTGGGATGTACACCGGCTTC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TCAGGCGGAAGAACGTCGGGATATCTCGTCAA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GCGGGAACTAACACCACTCAGTTGGCGACAAC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTACTGAGCCGAAAGAACTCTTTGGCTTAATG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AAGCGGAACATCCCCGTTCCACCACATGCGCA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ATCACCAGCGCGTCGAGGTTGTCAAAGTCGCC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AATGAGCGCAAGCTGATTACTGGGTATGCAAA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AACTGGTCATGAAGCCGGTCAAGGAAGGGCGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTGGCGCTCGATGCCGTGGCGCAGTGCGTCGG
GTTCACTGCCGAGTAGGCAGCTTAGAAA

>NC_014500|4|4|4000264-4001491|CRISPRCasFinder
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ATGACTGTTGCGGCACCAGGGTCAGACGCAAG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TGACCGCCGCCGATGGTTTCGATTATCGAATC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGGAGCCAAGCCAGTCACTGGACTACCGGACG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTTTGCTTGCTCAATCGCAGACAGTAGCGGGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGCAGAACCGGCACGCACCGCGCCGGTATTGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGAAATATTGATGGCGCGCGACTCCTTGGGGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TGTTAACCCAGGTCCTCAAATTCATCATTGGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TAAACGCCACTGGCTCTTTCGCCGCCCTGTCA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TCAGCCAACTCCATGCGATTACGTGGACGAGC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TTCGTCATACCACGCGGATACATCATCGCCGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ACCGCCCGTCGGCACCTGGGCGACGAACTTTA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TATTATCCGGCTTTGGGATGTACACCGGCTTC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TCAGGCGGAAGAACGTCGGGATATCTCGTCAA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GCGGGAACTAACACCACTCAGTTGGCGACAAC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTACTGAGCCGAAAGAACTCTTTGGCTTAATG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AAGCGGAACATCCCCGTTCCACCACATGCGCA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ATCACCAGCGCGTCGAGGTTGTCAAAGTCGCC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AATGAGCGCAAGCTGATTACTGGGTATGCAAA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AACTGGTCATGAAGCCGGTCAAGGAAGGGCGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTGGCGCTCGATGCCGTGGCGCAGTGCGTCGG
GTTCACTGCCGAGTAGGCAGCTTAGAAA

>NC_014500|4|3|4000264-4001551|CRT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ATGACTGTTGCGGCACCAGGGTCAGACGCAAG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TGACCGCCGCCGATGGTTTCGATTATCGAATC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGGAGCCAAGCCAGTCACTGGACTACCGGACG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTTTGCTTGCTCAATCGCAGACAGTAGCGGGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGCAGAACCGGCACGCACCGCGCCGGTATTGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AGAAATATTGATGGCGCGCGACTCCTTGGGGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TGTTAACCCAGGTCCTCAAATTCATCATTGGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TAAACGCCACTGGCTCTTTCGCCGCCCTGTCA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TCAGCCAACTCCATGCGATTACGTGGACGAGC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TTCGTCATACCACGCGGATACATCATCGCCGT
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ACCGCCCGTCGGCACCTGGGCGACGAACTTTA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TATTATCCGGCTTTGGGATGTACACCGGCTTC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	TCAGGCGGAAGAACGTCGGGATATCTCGTCAA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GCGGGAACTAACACCACTCAGTTGGCGACAAC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTACTGAGCCGAAAGAACTCTTTGGCTTAATG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AAGCGGAACATCCCCGTTCCACCACATGCGCA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	ATCACCAGCGCGTCGAGGTTGTCAAAGTCGCC
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AATGAGCGCAAGCTGATTACTGGGTATGCAAA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	AACTGGTCATGAAGCCGGTCAAGGAAGGGCGA
GTTCACTGCCGAGTAGGCAGCTTAGAAA	GTGGCGCTCGATGCCGTGGCGCAGTGCGTCGG
GTTCACTGCCGAGTAGGCAGCTTAGAAA	CTCAACTGAGCGAGTTATGTGACCTGCAAAAT
GTTCACTGCCGCACAGGCAGTATCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014500.1\|WP_013319379.1\|4009654_4012486_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_014500.1\|WP_033112060.1\|3987686_3988163_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_014500.1\|WP_013319368.1\|3995508_3998784_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NC_014500.1\|WP_033112063.1\|4013347_4013926_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_014500.1\|WP_013319376.1\|4007474_4007894_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NC_014500.1\|WP_013319365.1\|3992197_3993205_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_014500.1\|WP_013319359.1\|3985942_3987316_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NC_014500.1\|WP_033112062.1\|4004244_4005855_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_014500.1\|WP_013319377.1\|4008295_4009285_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_014500.1\|WP_013319383.1\|4015164_4015752_+\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NC_014500.1\|WP_033112061.1\|3993221_3994160_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_014500.1\|WP_013319373.1\|4001575_4003267_-\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_014500.1\|WP_013319364.1\|3991636_3992191_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NC_014500.1\|WP_013319380.1\|4012741_4013287_+\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NC_014500.1\|WP_158305125.1\|4006183_4007464_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_014500.1\|WP_052303362.1\|4014393_4014882_+\|hypothetical-protein	unknown	unknown	unknown
NC_014500.1\|WP_013319361.1\|3988413_3989028_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NC_014500.1\|WP_013319367.1\|3994156_3995494_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_014500.1\|WP_013319362.1\|3989076_3990270_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NC_014500.1\|WP_013319369.1\|3998780_3999782_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676

Protein	Function_ID	Function_description	E-value
NC_014500.1\|WP_013319379.1\|4009654_4012486_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_014500.1\|WP_033112060.1\|3987686_3988163_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.64041e-34
NC_014500.1\|WP_013319368.1\|3995508_3998784_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NC_014500.1\|WP_033112063.1\|4013347_4013926_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	1.0086e-27
NC_014500.1\|WP_013319376.1\|4007474_4007894_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	9.21736e-58
NC_014500.1\|WP_013319365.1\|3992197_3993205_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_014500.1\|WP_013319359.1\|3985942_3987316_-\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NC_014500.1\|WP_033112062.1\|4004244_4005855_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.7546e-59
NC_014500.1\|WP_013319377.1\|4008295_4009285_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.59666e-25
NC_014500.1\|WP_013319383.1\|4015164_4015752_+\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	2.35855e-33
NC_014500.1\|WP_033112061.1\|3993221_3994160_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.5591e-156
NC_014500.1\|WP_013319373.1\|4001575_4003267_-\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.35699e-101
NC_014500.1\|WP_013319364.1\|3991636_3992191_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	5.60898e-96
NC_014500.1\|WP_013319380.1\|4012741_4013287_+\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.77222e-107
NC_014500.1\|WP_158305125.1\|4006183_4007464_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.00618e-45
NC_014500.1\|WP_013319361.1\|3988413_3989028_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	9.19513e-40
NC_014500.1\|WP_013319367.1\|3994156_3995494_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NC_014500.1\|WP_013319362.1\|3989076_3990270_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NC_014500.1\|WP_013319369.1\|3998780_3999782_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0

>NC_014500.1|WP_013319369.1|3998780_3999782_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNVFSPSDLKTILHSKRANIYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMVGFCGGGGTPLFAANEAEVAVSWLSPQSEYRPTEYLQDWVSFWFDEEQRLAAAIAFQQVRIGQIRQHWLEGRLARESRFAIKPEQVEALLNRYQQGLSGCRTSNDVLVQEAMMTKALYRLAANAVSYGEFTRAKRGGGTDLANRFLDHGNYLAYGVAAVALWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMEGEEEQDFRQRCLTAFRQAEALDVIIDSLQQVAQQRSQVVKTGSQVAR
>NC_014500.1|WP_013319368.1|3995508_3998784_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRVLDQFAERKGERTWQTAITEEGLKTLRQLLRKTARRNTAVACHWIRSANHTELLWIVGNLRRFNRQGSVPTNRTERDILRSNDENPWHSAEAFSLLAAIAGLFHDIGKANRLFQAGLRGNGPRSQPYRHEWVSLRLFQAFVGERDDTGWLTALGGISPDDDTALLARLQQDDPESWASPFRDLPPLAQVVGWLIVSHHHLPLFQTWEKPDGDSVSPDLACAERWLTGQLSPRWNAVNHLNFDGDDTQWEQVWQFPHGTPLQSRVWCEKARKFAARALKLPSLPTFGHLDQRLTAHLARLVLMLADHHYSSSPATSGWQDPRYPVWANTDRQSGTLKQQLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSADARFRWQDKAFDQVCAIREQTARHGFFGVNMASTGRGKTLANARIMYGLADESRGCRFSVALGLRTLTLQTGDALRQRLTLDEDDLAVLIGSQAVQELHERRQQAERAAQTGSESAEALFAEHQYVSYQGSLDDGRLKTWLEKSPTLHQLLSAPVLVTTIDHLMPATESLRGGHQIAPMLRLLTADLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFEAYLDGRAAWQQAYGEPDTPLNVCCGWFDEFDSQCQPFADTQAFSERHQAFVAGRIDKLQQQELTLRWAEIEPVASPAPDVDAVCRAVAQTLHQRLFRLHEQHHQTHPSGKTVSLGLIRMANINPLAAVARALMVMPSPPDCCVHYCVYHSQHPLVMRSHIEARLDAALMRKHPDALWQVTEIREAIEQQPQRHHLFVVLATSVAEVGRDHDYDWAIAEPSSMRSLIQLAGRILRHRQRDEFVPTSPNFYLLSHNVRALKGEQVAFCRPGFESNDRLLTSHDLHQLLKPEDYRAISAVPRIQPPVLKKPLTLVTLEHAALAGKLFGPKGTSPLQATAVLWWRKPLHWNGELQRRTRFRQSEQQQRYCLWLEDESDALRFMVPDDGPSGWKASEAIRPVTLTLAEGVSGWVEMDCTARYSQLAEEKQWELAWVSARFGEISLSKRDSEWFWHPLLGVFGEQS
>NC_014500.1|WP_013319367.1|3994156_3995494_-|type-I-F-CRISPR-associated-protein-Csy1
MEEGELRQFIVSYIENRKQAKLDAFDKAADKQRAALSGEALAEAELTLAQARREIEQAYEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFSTKPAADSAVLSTASLAQPAIDAVGNAAALDVAKLLQTEHHGDSLLAALQRGDHRALEALAESPQQLTQWLAGFGQVLTDKQPSSHKLAKQIYFPLGDGEYHLLSPLYSSSLSQALDQRLTAVRFGEQAKAIREARRENRWHDEVLVSYPGVAVQNMGGTKPQNISALNSARSGRSYLLSSAPPQWRSQLKPPVEHDSIFRERGEVDALTYADRREMRQFLLSVKEVENNREIRNQRRRYLDQLIDTLFGYVATVQNLRPAGWSVDSRLKRHLQLWLDPLRGLQDTDFLRERDAGDWKEQVAHEFGRWLNARLQHEKLIFGEVERREWSTAALFKQRLRETERALKGELA
>NC_014500.1|WP_033112061.1|3993221_3994160_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIILRRIQVENANAIAGHTYGFPAISHFLGFTHALSRQLQASHGLTLEGCGVVCHQHQLHAYGSGWNRSFALTRNPLTKEEKTAAFNEEGRMHLTVSLLIECHGMLPGEDGLEALKQQLQRLSLRQRLAGGLIVDIERVSIDDMPADDGSTRGLMRRLLPGFVLLDRTPLLQSHFQDLQQANPQAEMLDAWLDFAALKHQAVRSPDDEVNWQALPKPEGGYLVPLMTGYRAISPLYAPGEVEKTRDPSTPFCFAEAIYGVGEWRGAHRINDINRILWRYHYQHGTYRCLQTADDLNRAADDYDELEFNY
>NC_014500.1|WP_013319365.1|3992197_3993205_-|type-I-F-CRISPR-associated-protein-Csy3
MAKVATTLKTASVLAFERKLANSDALMFAGNWQQEQWAPVTIQEKSVRGTISNRLKNAISSDPAKLDAEIQKANLQTVDVAALPFDADTLKVAFTLRVLGNLAQPSVCNDQDYQQALTEVINGYARDQGFGVLAARYAENIASGRFLWRNRIGAEAVQVVVTHDDKRWEFNGEDHSLRQFSQPNGALAELTHAIELALAGNDSAFFRVDAQVKLGNGQEVFPSQELVLDERARNGKSKILYQVNDVAAIHSQKIGNALRTVDDWHPEAAETGPIAVEPYGSVTSRGRAYRQPKDKMDFYTLLDNWVIKGSAPAVEQQHYVIATLIRGGVFGEKGE
>NC_014500.1|WP_013319364.1|3991636_3992191_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSGVQLLSALFAKLHRALGQRATGAIGVSFPDAGKTLGERLRLHGSVQELAALEQTGWLRGLRDYTAITEPLPVPAGVKHRTVRRVQVKSSAERLRRRAVNKGRMTVDEADARIPYTVEKRTSLPYLPLRSLSNGQTFLLFVEHGPLQDKPVAGAFSSYGLSAVATIPWF
>NC_014500.1|WP_013319362.1|3989076_3990270_+|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDAYAGDPILSLMEQFKQDPRTDKVNLSIGLYYDGQGVIPQLQAVNAAETQMQAEPQQASVYLPMEGLSSYRSAVQTLLFGERHPALTSQRIATIQTLGGSGALKVGADFLKRYFPDSEVWVSDPTWENHIAIFSGAGFQVHTYPYFDADTLGVNVDGMISALKQLPPRSIVLLHPCCHNPTGSDLTHAEWDRVIEVLIKGELVPFLDIAYQGFGGGMDDDAYAIRAIAGTGLPALVSNSFSKIFSLYGERVGGLSVVCEDQEAANRVLGQLKATVRRNYSSPPNFGAQVVSRVLNDSTLNASWHEEVEAMRLRILEMRQTLVDELKKALPNRNFDYLLTQRGMFSYTGFSAAQVDRLREEFGVYLIASGRICVAGLNHHNVQRVAAAFAAVQ
>NC_014500.1|WP_013319361.1|3988413_3989028_+|YitT-family-protein
MDNVITPQPVSHTLLEDILALLIGTLMVSFGVILLRQAGALTGGTAGMAFLLHYATHISFGTAFFLINLPFYYLAIRRMGWPFTIKTFCAVAMVSLFSDLHPLFIHFDHLQPIYATLFGNLIMGLGFIVLFRHRASLGGVNILALYLQDKSGIRAGKFQMAVDVTIVLTSLFVVSIPMLIASVLGAAALNLIIAMNHRPGRYTA
>NC_014500.1|WP_033112060.1|3987686_3988163_+|Lrp/AsnC-family-transcriptional-regulator
MYNIDDFDLKILTLLQANGRLTNQELSDLVGLSASQCSRRRIALEQAQLILGYHARLAPDAVGLEVMGLIEVRLINHTQECVDSFHQMLGEVDAIIDAYKTTGDADYMLKVAVADLHGLSALISQILARNKSVAHLKTSVVLNRLKENGLMAPATVLP
>NC_014500.1|WP_013319359.1|3985942_3987316_-|amino-acid-permease
MDTQQNSQLKRGLKNRHIQLIALGGAVGTGLFLGIAQTIRMAGPSVLLGYAIAGVIAFFIMRQLGEMVVEEPVAGSFSHFANQYWGNFAGFMSGWNYWVLYVLVSMAELSAVGIYIQYWWPAVPTWVSAAVFFVAINAINLSNVKVYGELEFWFSIIKVAAIIGMIVFGGYLLLSGTGGPDASVANLWQHGGFFPNGVSGMVMAMAVIMFSFGGLELVGITAAEADDPQKSIPRATNQVIYRILLFYVGALAVLLSLYPWQKVVEGGSPFVLIFHALDSNLVANVLNLVVLSAALSVYNSCVYCNSRMLFGLAQQGNAPRALLTVNRRGIPLVSLGVSALATALCVLLNYLMPGKAFELLMALVVSALVINWAMISITHLKFRQAKQRAQQETRFKSLGYPLTNILCLLFLAGILVIMAMTPGIQISVWLIPFWLLALAAGYAIKKRKGAVSALTAE
>NC_014500.1|WP_013319373.1|4001575_4003267_-|MCP-four-helix-bundle-domain-containing-protein
MRLSDWRIGYRLGAGFAVLAVMLVVVGILSITRLSSFHDSARDIVQEIYPQTVDANTLIDNVNEGVRVFQQLLLVSGDDRIKAVSDQIPPISKEITRLMDALEKHANESNDARNQQLIGDIRLIRAKFLESGQKVIALVKANNREEALNEFNQRLNPAQREYRNAVRQLVDYQDNAMMSTVDAMSATYHDIRLVLLAILGIGVVLSVWVAMAITRSVTQPIQQALVMADRVSQGDLTSQISSNRKDEAGLLLQALDHMNASLRQIVGQVRDGAEAISTAASQIAAGNQDLSSRTEEQASSLEQTAASMEELVSTIKNTAENTQQATSIANQASSAAHRSGEVMLSVTTKMRGIREASMRMAEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKELIDDSVDKIQEGMQLVDTAESTMDGLTGHVKDVHSIINEISQASHEQSDGISQINIAVGQIDTTTQQNAALVEESASAALSLQSQASLLAEAVSAFRLTPQGGNGAPSPVRQPTALSHALPSARPNVTEKRAATTAGTNDDWTSF
>NC_014500.1|WP_033112062.1|4004244_4005855_+|GGDEF-domain-containing-protein
MRIKKLIQINLLHLILFISLASMFVTLLNSYLTFYHVQKKLLIEQAVKVNSSYSSKLSVTVDNFFSMSEEQLSYSAKLIASHIQSGNLRPLQAELQRIHQLSHAFNSMVVVTEHGQIIAASPTSLNLTGITLTSNRHLTTLREKRFFISAPYTSLSGNYIIFISYPIADDVGNYLGYIGGSLYLNSRRILNEFMNTQFSNDSFNTYVIDKEGTIIYHRDTGQIGKKINDSHILSSIANQDKGSFMMPDEQGILSPASFIRTQKAGWIIITQQSFHSLEEALNDVMISVLKQGTPLGILTLLALSILAYYIAKPLRQLSKSASSMDQLGVISKIRAVKAWYLEVEQLKRVLLMGTVLLHKRIGRLSSEAHTDPLSGMLNRRGMQESMEEIRSEYKKISVIAIDIDHFKVINDSFGHDVGDEVIRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANTVYMPGYRHHQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVVEYLSDDISLAQH
>NC_014500.1|WP_158305125.1|4006183_4007464_+|diguanylate-cyclase
MLFFISHTAASFSIPQDISRQNQMLLGIIDSLFVPLYFLTLQVVIRFKNRYYPIRRTVILCAPIVATSILQSLVYSGLLYSLDNGHYVVASLDWATEQIATGVLLFLILTGFMAYKRTGAPLFKTIQRYKADAVLIVASVLVQILLIQSSTLEQTILLLIPLALVSIKLNFYPSALLSGLTLSIVYTLISTRYYGDYWKDSSLIYIENLISYRLNTLISCLVIMLICEKNYAKRFAINIIKRKVYTDYLSGLYNRKFLWKKAREIPKETPLSVLICDIDNFKHINDTYGHGNGDKIIQAVSHTIKTHISPHDLAVRWGGEEFLILSRSPDEQYLDTLSARILDSIRQLQITLDGNIARHVTVSIGGCNFEYQQSPDFVMAIETADKLLYQSKQAGKDRATLRTLTQDTNVSASFAPVLPPAEHEKL
>NC_014500.1|WP_013319376.1|4007474_4007894_-|YjbQ-family-protein
MWKQYDIRLKPRSRGFHLITDEVLAQVMDLCEVRVGLLHVFICHTSASLTLNENADPTVRQDFESAFNHLVPEDEPYYRHTYEGSDDMPAHLKSSLLGSSLMLPVRNGRLHVGTWQGIYLCEHRNHGGSRSLVATLQGE
>NC_014500.1|WP_013319377.1|4008295_4009285_+|IS110-family-transposase
MYYVGIDISKRVVDVCLLADGIKGKRKTKTLPNGPNAVQALAEWLTRQKCEPSQAHIIMEATGVYHEHLAYGLHHSGIAVSVINPHRLREFARGMGILTKTDKVDACVLACYGCLRQPEGWTPPSPEIRKLRALLQHRDSLLGDKQRLENRLSTLNATLTTEEVVTSLESMVQHVKGELERIERLIEDHIDRHPGLKNDLKLLKSIDGVGDQIGWNMLATIRGSNFRSAEQVAAYLGVIPVERRSGTSVRGRARLSKIGPPAIRAKLYMGAIAAISHNRHVKAQYERLLLKGKAKMLAIGAAMRKLVHLCYGVLHTQQRYDRDYGAVAS
>NC_014500.1|WP_013319379.1|4009654_4012486_-|excinuclease-ABC-subunit-UvrA
MDKIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHDIPLDAQTVSQMVDNVLSQPEGKRLMLLAPIVKERKGEHTKTLENLATQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRNDLAQRLAESFETALELSGGTAVVADMDDPNAPELVFSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQNGELSLAGGAIRGWDRRNFYYFQMLRSLADHYQFDVEAPFDSLSPAVQKVILYGSGKENIEFKYINDRGDTSVRRHPFEGVLNNMERRYKETESTAVREELAKFISNRPCASCGGTRLREEARHVYVEQTTLPQIADMSIGHAMEFFHNIKLSGQRAKIAEKVLKEIGDRLRFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAEGTAAQIMAEPESLTGQFLSGARKIEIPAQRIPADPGKVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGGELNEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPEARSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAQCEKSHTARFLKPILERG
>NC_014500.1|WP_013319380.1|4012741_4013287_+|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYIEGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQANQFSGGGQSRPQQSAPMPSNEPPMDFDDDIPF
>NC_014500.1|WP_033112063.1|4013347_4013926_-|flavin-reductase-family-protein
MNSAISPVELAKAYRLVNHGPTVLVSACHDGVEDVMAAAWCCALDFAPPKLTVVLDKATKTRELLENSGYFAIQVPTAAQLELTNQVGSISLRDNPDKLAHCQVELFCTGESDVPLVAGCAAWLLCKLIPESHNQQTYDLFIGEVIGAWADSRVFSEGHWHFEDADPQWRSLHHVAGGHYYAIGDALDAKES
>NC_014500.1|WP_052303362.1|4014393_4014882_+|hypothetical-protein
MAVEIQENEVRAAAAGEGIHYPSLSSCMSITCILNNGSKVGAHAYQFGDSGITLINRMKALIGNNIVVAVKAKGHGGCWGKNLQSQFELAPEAIQKWKDANPNINGEPTDLELIPYFQPLFITADPVVFRNWLNAQFNVQNATFTDMSIDGNVDVDANGNFY
>NC_014500.1|WP_013319383.1|4015164_4015752_+|DUF4255-domain-containing-protein
MIHASINYLTRQLNQYLKNTLNLHDDVVVIANPADDDGKMFPLAKNKLVVFLSNIEREMLPHRSNAAPPGNRFAMTTPPLFVRVSMVVAANFTGSQYAEGLQVIAHAMAFLHKNAQLNRYNAPDMDEAIEQILLEMDSLPRHELGNMWTMLGIRYLPSAVYRLRVKIADSQAIQSQSEGVRQLHTVVTKDYVTKD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	54660-54693	2	0.941
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NC_004313	Salmonella phage ST64B, complete genome	2038-2071	2	0.941
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NC_027339	Enterobacteria phage SfI, complete genome	2073-2106	2	0.941
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	AY055382	Salmonella typhimurium phage ST64B complete sequence	2038-2071	2	0.941
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	KC139521	Salmonella phage FSL SP-004, complete genome	4658-4689	2	0.938
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	MK972710	Salmonella phage SI22, complete genome	5447-5478	2	0.938
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	NC_049459	Salmonella phage SW9, complete genome	5460-5491	2	0.938
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	KT630644	Salmonella phage SEN1, complete genome	4721-4752	2	0.938
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KU927493	Salmonella phage 118970_sal3, complete genome	362-395	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KU927493	Salmonella phage 118970_sal3, complete genome	39949-39982	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NC_021857	Shigella phage SfII, complete genome	2148-2181	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KC814930	Shigella phage SfIV, complete genome	2090-2123	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NC_003444	Enterobacteria phage SfV, complete genome	2090-2123	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	U82619	Shigella flexneri bacteriophage V, complete genome	2090-2123	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	46561-46594	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	46567-46600	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	46572-46605	3	0.912
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	46571-46604	3	0.912
NC_014500_4	4.19\|4001372\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001372-4001403	32	NZ_CP048424	Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence	238838-238869	5	0.844
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP010862	Marinovum algicola DG 898 plasmid pMaD7	30099-30130	5	0.844
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	141862-141893	6	0.812
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NZ_CP011600	Phytobacter ursingii strain CAV1151 plasmid pCAV1151-215, complete sequence	24317-24348	6	0.812
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NZ_AP018757	Metakosakonia sp. MRY16-398 plasmid pMRY16-398_1, complete sequence	180362-180393	6	0.812
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1167998-1168029	6	0.812
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1359018-1359049	6	0.812
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	368338-368369	6	0.812
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	18528-18559	6	0.812
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_015970	Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence	42399-42430	6	0.812
NC_014500_1	1.9\|1729252\|33\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729252-1729284	33	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	251535-251567	7	0.788
NC_014500_1	1.13\|1729514\|33\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729514-1729546	33	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	101426-101458	7	0.788
NC_014500_1	1.13\|1729514\|33\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729514-1729546	33	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	101426-101458	7	0.788
NC_014500_2	2.5\|3985412\|31\|NC_014500\|CRISPRCasFinder	3985412-3985442	31	NZ_CP009155	Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence	189986-190016	7	0.774
NC_014500_3	3.1\|3990788\|32\|NC_014500\|CRISPRCasFinder,CRT	3990788-3990819	32	NZ_CP023066	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence	60093-60124	7	0.781
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	546291-546322	7	0.781
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	MK977705	Gordonia Phage Mollymur, complete genome	6893-6924	7	0.781
NC_014500_4	4.4\|4000472\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000472-4000503	32	MN694686	Marine virus AFVG_250M1040, complete genome	27551-27582	7	0.781
NC_014500_4	4.4\|4000472\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000472-4000503	32	MN694317	Marine virus AFVG_250M684, complete genome	13892-13923	7	0.781
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	KT887559	Pseudomonas phage phi3, complete genome	15387-15418	7	0.781
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	324260-324291	7	0.781
NC_014500_4	4.19\|4001372\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001372-4001403	32	MN693058	Marine virus AFVG_25M517, complete genome	3705-3736	7	0.781
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	AP017627	Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome	83691-83722	7	0.781
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP016618	Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence	233560-233591	7	0.781
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	513299-513330	7	0.781
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	177698-177729	7	0.781
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	312829-312860	7	0.781
NC_014500_1	1.4\|1728923\|32\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728923-1728954	32	MG592567	Vibrio phage 1.198.A._10N.286.54.F4, partial genome	3928-3959	8	0.75
NC_014500_1	1.4\|1728923\|32\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728923-1728954	32	MG592568	Vibrio phage 1.198.B._10N.286.54.F4, partial genome	3928-3959	8	0.75
NC_014500_1	1.5\|1728987\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728987-1729020	34	NZ_CP025810	Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence	111524-111557	8	0.765
NC_014500_1	1.7\|1729121\|33\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729121-1729153	33	NC_048797	Bacillus phage vB_BmeM-Goe8, complete genome	62841-62873	8	0.758
NC_014500_1	1.11\|1729382\|35\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729382-1729416	35	MK249230	Blackfly microvirus SF02 isolate 195, complete genome	103-137	8	0.771
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	360449-360480	8	0.75
NC_014500_2	2.5\|3985412\|31\|NC_014500\|CRISPRCasFinder	3985412-3985442	31	NZ_CP032704	Pantoea dispersa strain DSM 32899 plasmid unnamed2, complete sequence	117850-117880	8	0.742
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NZ_CP018759	Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence	36616-36647	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	KY555147	Caulobacter phage Ccr34, complete genome	63134-63165	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	KY555145	Caulobacter phage Ccr29, complete genome	67047-67078	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	KY555143	Caulobacter phage Ccr2, complete genome	62514-62545	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NC_019410	Caulobacter phage CcrKarma, complete genome	62797-62828	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	KY555146	Caulobacter phage Ccr32, complete genome	62693-62724	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NC_019407	Caulobacter phage CcrMagneto, complete genome	61382-61413	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	KY555144	Caulobacter phage Ccr5, complete genome	61966-61997	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	JX163858	Caulobacter phage phiCbK, complete genome	145133-145164	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	KY555142	Caulobacter phage Ccr10, complete genome	62039-62070	8	0.75
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NC_019411	Caulobacter phage CcrSwift, complete genome	61945-61976	8	0.75
NC_014500_3	3.4\|3990968\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990968-3990999	32	NZ_CP022994	Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence	37822-37853	8	0.75
NC_014500_3	3.6\|3991088\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3991088-3991119	32	MN327636	Pectobacterium phage MA6, complete genome	15888-15919	8	0.75
NC_014500_3	3.6\|3991088\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3991088-3991119	32	MN308080	Pectobacterium phage MA1A, partial genome	5944-5975	8	0.75
NC_014500_4	4.4\|4000472\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000472-4000503	32	MN694326	Marine virus AFVG_250M910, complete genome	8273-8304	8	0.75
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	110288-110319	8	0.75
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	MH744418	Streptomyces phage JustBecause, complete genome	35422-35453	8	0.75
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	MT310898	Streptomyces phage Kela, complete genome	35287-35318	8	0.75
NC_014500_4	4.12\|4000952\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000952-4000983	32	MT553337	Mycobacterium phage DroogsArmy, complete genome	42976-43007	8	0.75
NC_014500_4	4.12\|4000952\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000952-4000983	32	JF957060	Mycobacterium phage Timshel, complete genome	43260-43291	8	0.75
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	157183-157214	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2268798-2268829	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1388100-1388131	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	358456-358487	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	360170-360201	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1785294-1785325	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	425993-426024	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	340763-340794	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	939726-939757	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1310845-1310876	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1368323-1368354	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1610375-1610406	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1980023-1980054	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	45254-45285	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1556208-1556239	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1831782-1831813	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1276444-1276475	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	492220-492251	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1312262-1312293	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	1544868-1544899	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1376730-1376761	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	568179-568210	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	355720-355751	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	358456-358487	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	171996-172027	8	0.75
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	JF412302	EBPR siphovirus 1, partial sequence	2467-2498	8	0.75
NC_014500_1	1.1\|1728725\|34\|NC_014500\|CRT	1728725-1728758	34	NC_008042	Ruegeria sp. TM1040 plasmid unnamed, complete sequence	35193-35226	9	0.735
NC_014500_1	1.5\|1728987\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728987-1729020	34	NZ_LR134459	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence	218905-218938	9	0.735
NC_014500_1	1.5\|1728987\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728987-1729020	34	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	47113-47146	9	0.735
NC_014500_1	1.16\|1729710\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729710-1729743	34	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	175605-175638	9	0.735
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KX781992	Mycobacterium phage Gabriel, complete genome	127646-127677	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK112554	Mycobacterium phage TinyTim, complete genome	128100-128131	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MN234193	Mycobacterium phage Kboogie, complete genome	128467-128498	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK450432	Mycobacterium phage ValleyTerrace, complete genome	128013-128044	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359364	Mycobacterium phage ChickenPhender, complete genome	126679-126710	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MH697586	Mycobacterium phage InigoMontoya, complete genome	128677-128708	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK112549	Mycobacterium phage Morizzled23, complete genome	127380-127411	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359347	Mycobacterium phage Ading, complete genome	130410-130441	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MG812493	Mycobacterium phage NuevoMundo, complete genome	129998-130029	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359339	Mycobacterium phage Naija, complete genome	128716-128747	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359333	Mycobacterium phage JustHall, complete genome	127838-127869	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KT321476	Mycobacterium phage Zeenon, complete genome	129299-129330	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MN428065	Mycobacterium phage Cactojaque, complete genome	127255-127286	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MN735434	Mycobacterium phage Mangeria, complete genome	129806-129837	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	JN699625	Mycobacterium phage Wally, complete genome	127997-128028	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KX721255	Mycobacterium phage Yucca, complete genome	129659-129690	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359366	Mycobacterium phage Basquiat, complete genome	126532-126563	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359346	Mycobacterium phage NoodleTree, complete genome	129437-129468	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	JN699013	Mycobacterium phage Pio, complete genome	130747-130778	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359361	Mycobacterium phage Darko, complete genome	128250-128281	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359348	Mycobacterium phage Rahel, complete genome	129154-129185	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MH779498	Mycobacterium phage Bread, complete genome	128116-128147	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MT818423	Mycobacterium phage Janiyra, complete genome	128902-128933	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MH316567	Mycobacterium phage ParkTD, complete genome	129013-129044	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	AY129337	Mycobacteriophage Bxz1, complete genome	130091-130122	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KX721256	Mycobacterium phage Erdmann, complete genome	129126-129157	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359335	Mycobacterium phage Patter, complete genome	128730-128761	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	EU826467	Mycobacterium phage Rizal, complete genome	126969-127000	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MT723944	Mycobacterium phage ChaylaJr, complete genome	127923-127954	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KR080196	Mycobacterium phage Momo, complete genome	128013-128044	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359318	Mycobacterium phage Specks, complete genome	129121-129152	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KF024734	Mycobacterium phage Shrimp, complete genome	129780-129811	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MH825697	Mycobacterium phage Bangla1971, complete genome	128722-128753	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359338	Mycobacterium phage Amataga, complete genome	128013-128044	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359350	Mycobacterium phage Nidhogg, complete genome	129542-129573	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MT723945	Mycobacterium phage Quasimodo, complete genome	129052-129083	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359342	Mycobacterium phage ShiaLabeouf, complete genome	128472-128503	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK450422	Mycobacterium phage RoMag, complete genome	128750-128781	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	JF704116	Mycobacterium phage Drazdys, complete genome	129399-129430	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359336	Mycobacterium phage Chargie21, complete genome	126532-126563	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK112534	Mycobacterium phage Burrough, complete genome	129886-129917	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359334	Mycobacterium phage Delilah, complete genome	129134-129165	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MN276192	Mycobacterium phage Trinitium, complete genome	126854-126885	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359324	Mycobacterium phage Tortoise16, complete genome	128562-128593	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359349	Mycobacterium phage FoxtrotP1, complete genome	129712-129743	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	JF704096	Mycobacterium phage Ghost, complete sequence	128627-128658	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359344	Mycobacterium phage Napoleon13, complete genome	127744-127775	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359363	Mycobacterium phage Fludd, complete genome	127487-127518	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	NC_004687	Mycobacterium phage Bxz1, complete genome	130091-130122	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	NC_011270	Mycobacterium phage Spud, complete genome	128087-128118	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359321	Mycobacterium phage Phusco, complete genome	128251-128282	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359362	Mycobacterium phage Atlantean, complete genome	128013-128044	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	EU826469	Mycobacterium phage ScottMcG, complete genome	127747-127778	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK310143	Mycobacterium phage Dietrick, complete genome	127255-127286	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK878897	Mycobacterium phage Blackbrain, complete genome	128309-128340	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359330	Mycobacterium phage Iota, complete genome	128387-128418	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KT365398	Mycobacterium phage DTDevon, complete genome	130754-130785	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KX369583	Mycobacterium phage Littleton, complete genome	129250-129281	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KT365400	Mycobacterium phage ErnieJ, complete genome	125954-125985	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KC691257	Mycobacterium phage Astraea, complete genome	127617-127648	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MG872839	Mycobacterium phage LifeSavor, complete genome	129241-129272	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KC748968	Mycobacterium phage Gizmo, complete genome	131042-131073	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	KC748970	Mycobacterium phage ArcherS7, complete genome	129758-129789	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359353	Mycobacterium phage BadAgartude, complete genome	128103-128134	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MH697590	Mycobacterium phage Phlegm, complete genome	129419-129450	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MN428066	Mycobacterium phage JPickles, complete genome	127365-127396	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	DQ398053	Mycobacteriophage Catera, complete genome	127226-127257	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	JN699626	Mycobacterium phage MoMoMixon, complete genome	128928-128959	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK450424	Mycobacterium phage Melpomini, complete genome	127547-127578	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MN183285	Mycobacterium phage YoungMoneyMata, complete genome	129184-129215	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MF919493	Mycobacterium phage Audrick, complete genome	127903-127934	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	NC_008207	Mycobacterium phage Catera, complete genome	127226-127257	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	JN624850	Mycobacterium phage Pleione, complete genome	129479-129510	9	0.719
NC_014500_2	2.4\|3985352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder	3985352-3985383	32	MK359326	Mycobacterium phage Pivoine, complete genome	128716-128747	9	0.719
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	402625-402656	9	0.719
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NZ_CP049320	Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence	332092-332123	9	0.719
NC_014500_4	4.1\|4000292\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000292-4000323	32	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	141021-141052	9	0.719
NC_014500_4	4.2\|4000352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000352-4000383	32	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	797425-797456	9	0.719
NC_014500_4	4.2\|4000352\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000352-4000383	32	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	796974-797005	9	0.719
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	KU998254	Gordonia phage Kampe, complete genome	20391-20422	9	0.719
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	KU998252	Gordonia phage PatrickStar, complete genome	20391-20422	9	0.719
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	NC_030915	Gordonia phage Orchid, complete genome	20391-20422	9	0.719
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP034812	Paracoccus sp. Arc7-R13 plasmid unnamed3, complete sequence	153486-153517	9	0.719
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	389172-389203	9	0.719
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	904466-904497	9	0.719
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1348866-1348897	9	0.719
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1259524-1259555	9	0.719
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_018023	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.02, complete sequence	143489-143520	9	0.719
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	MN586029	Mycobacterium phage Hannaconda, complete genome	106104-106135	9	0.719
NC_014500_1	1.3\|1728857\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728857-1728890	34	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	334352-334385	10	0.706
NC_014500_1	1.4\|1728923\|32\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728923-1728954	32	NZ_CP013115	Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence	256693-256724	10	0.688
NC_014500_1	1.5\|1728987\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1728987-1729020	34	NC_017771	Deinococcus gobiensis I-0 plasmid P3, complete sequence	229080-229113	10	0.706
NC_014500_1	1.16\|1729710\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1729710-1729743	34	NZ_CP021816	Sinorhizobium meliloti strain M270 plasmid accessoryB, complete sequence	64511-64544	10	0.706
NC_014500_1	1.22\|1730110\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730110-1730143	34	MT701588	Klebsiella phage Metamorpho, complete genome	167420-167453	10	0.706
NC_014500_3	3.2\|3990848\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3990848-3990879	32	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	442449-442480	10	0.688
NC_014500_4	4.1\|4000292\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000292-4000323	32	NC_010474	Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequence	22036-22067	10	0.688
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	HG796220	Burkholderia phage Bp-AMP3 complete genome	31439-31470	10	0.688
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	MN191861	Burkholderia phage AMP1, complete genome	27262-27293	10	0.688
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	HG796219	Burkholderia phage Bp-AMP2 complete genome	31953-31984	10	0.688
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	NC_047743	Burkholderia phage Bp-AMP1 complete genome	31966-31997	10	0.688
NC_014500_4	4.5\|4000532\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000532-4000563	32	HG796221	Burkholderia phage Bp-AMP4 complete genome	31733-31764	10	0.688
NC_014500_4	4.6\|4000592\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000592-4000623	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	293109-293140	10	0.688
NC_014500_4	4.8\|4000712\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000712-4000743	32	NZ_CP048636	Rhizobium oryzihabitans strain M15 plasmid p4, complete sequence	26318-26349	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1047713-1047744	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1048796-1048827	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	950523-950554	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	950512-950543	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1091949-1091980	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1047809-1047840	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1047804-1047835	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	128931-128962	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1047788-1047819	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	MN062717	Microbacterium phage Sharkboy, complete genome	11051-11082	10	0.688
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	NC_042099	Microbacterium phage Dismas, complete genome	11052-11083	10	0.688
NC_014500_4	4.17\|4001252\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001252-4001283	32	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	181856-181887	10	0.688
NC_014500_4	4.19\|4001372\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001372-4001403	32	NC_023694	Rhodococcus phage ReqiPoco6, complete genome	33237-33268	10	0.688
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1246544-1246575	10	0.688
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	32099-32130	10	0.688
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_AP022578	Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence	126267-126298	10	0.688
NC_014500_4	4.20\|4001432\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4001432-4001463	32	NZ_CP028965	Burkholderia sp. IDO3 plasmid p1, complete sequence	249679-249710	10	0.688
NC_014500_4	4.21\|4001492\|32\|NC_014500\|CRT	4001492-4001523	32	NZ_CP015008	Aminobacter aminovorans strain KCTC 2477 plasmid pAA03, complete sequence	58875-58906	10	0.688
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KX452700	UNVERIFIED: Enterobacter phage KPN7 genomic sequence	44815-44848	11	0.676
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KR296691	Salmonella phage 37, complete genome	23936-23969	11	0.676
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KX452699	UNVERIFIED: Salmonella phage KPN6 genomic sequence	22902-22935	11	0.676
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KX765862	Salmonella phage ST-101, complete genome	15092-15125	11	0.676
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KX765864	Salmonella phage ST-374, complete genome	36218-36251	11	0.676
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KC139515	Salmonella phage FSL SP-124, complete genome	35246-35279	11	0.676
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	MN871450	UNVERIFIED: Serratia phage KpYy_1_41, complete genome	31145-31178	11	0.676
NC_014500_3	3.12\|3991448\|32\|NC_014500\|CRISPRCasFinder,CRT,PILER-CR	3991448-3991479	32	NC_009821	Enterobacteria phage Phi1, complete genome	146270-146301	11	0.656
NC_014500_4	4.11\|4000892\|32\|NC_014500\|PILER-CR,CRISPRCasFinder,CRT	4000892-4000923	32	MH045568	Microbacterium phage Kieran, complete genome	11055-11086	11	0.656
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	KR296689	Salmonella phage 35, complete genome	20001-20034	12	0.647
NC_014500_1	1.26\|1730374\|34\|NC_014500\|CRT,PILER-CR,CRISPRCasFinder	1730374-1730407	34	NC_021780	Salmonella phage FSL SP-088, complete genome	35489-35522	12	0.647

1. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 2, identity: 0.941

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaacgtggtcgg	Protospacer
* ******************** ***********

2. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 2, identity: 0.941

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaacgtggtcgg	Protospacer
* ******************** ***********

3. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_027339 (Enterobacteria phage SfI, complete genome) position: , mismatch: 2, identity: 0.941

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaacgtggtcgg	Protospacer
* ******************** ***********

4. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 2, identity: 0.941

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaacgtggtcgg	Protospacer
* ******************** ***********

5. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to KC139521 (Salmonella phage FSL SP-004, complete genome) position: , mismatch: 2, identity: 0.938

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
atcaccagcgcgtcgaggttctcatagtcgcc	Protospacer
******************** *** *******

6. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 2, identity: 0.938

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
atcaccagcgcgtcgaggttctcatagtcgcc	Protospacer
******************** *** *******

7. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 2, identity: 0.938

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
atcaccagcgcgtcgaggttctcatagtcgcc	Protospacer
******************** *** *******

8. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to KT630644 (Salmonella phage SEN1, complete genome) position: , mismatch: 2, identity: 0.938

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
atcaccagcgcgtcgaggttctcatagtcgcc	Protospacer
******************** *** *******

9. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaacgtagtcgg	Protospacer
* ******************** *****.*****

10. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaacgtagtcgg	Protospacer
* ******************** *****.*****

11. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_021857 (Shigella phage SfII, complete genome) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaatgtggtcgg	Protospacer
* ******************** **.********

12. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KC814930 (Shigella phage SfIV, complete genome) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaatgtggtcgg	Protospacer
* ******************** **.********

13. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_003444 (Enterobacteria phage SfV, complete genome) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaatgtggtcgg	Protospacer
* ******************** **.********

14. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to U82619 (Shigella flexneri bacteriophage V, complete genome) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctggtgtatcggcaatgtggtcgg	Protospacer
* ******************** **.********

15. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctgatgtatcggcaacgtggtcgg	Protospacer
* ***********.******** ***********

16. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctgatgtatcggcaacgtggtcgg	Protospacer
* ***********.******** ***********

17. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctgatgtatcggcaacgtggtcgg	Protospacer
* ***********.******** ***********

18. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 3, identity: 0.912

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
ccatcatgacctgatgtatcggcaacgtggtcgg	Protospacer
* ***********.******** ***********

19. spacer 4.19|4001372|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

aactggtcatgaagccggtcaaggaag-ggcga	CRISPR spacer
aagaggtcatggagcgggtcaaggaagcggcg-	Protospacer
**  *******.*** *********** ****

20. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010862 (Marinovum algicola DG 898 plasmid pMaD7) position: , mismatch: 5, identity: 0.844

gtggcgctcgatgccgtggcgcag--tgcgtcgg	CRISPR spacer
gtggcgctcgaagccgcggcgcagcttgcgcc--	Protospacer
*********** ****.*******  ****.*

21. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 6, identity: 0.812

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggttttcctggcctgctgttcggcgaccattt	Protospacer
* ** .*******************.****.

22. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011600 (Phytobacter ursingii strain CAV1151 plasmid pCAV1151-215, complete sequence) position: , mismatch: 6, identity: 0.812

gtttgcc-ctggcctgctgttcggcggccatca	CRISPR spacer
-tgcgtcacgggcctgctgctcggcggccatca	Protospacer
 * .*.* * *********.*************

23. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018757 (Metakosakonia sp. MRY16-398 plasmid pMRY16-398_1, complete sequence) position: , mismatch: 6, identity: 0.812

gtttgcc-ctggcctgctgttcggcggccatca	CRISPR spacer
-tgcgtcacgggcctgctgctcggcggccatca	Protospacer
 * .*.* * *********.*************

24. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 6, identity: 0.812

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ttcacgctcgatgcgctggcgcagtgcgtcgc	Protospacer
 * .**********  ***************

25. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.812

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gcggcgctcgatgccgtcgcgcagggcttgcg	Protospacer
*.*************** ****** ** *  *

26. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

-gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
accggcg-tcgatgccatggcgcattgcgtcga	Protospacer
  .**** ********.******* *******.

27. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 6, identity: 0.812

gtggc-gctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
-tgcctgctcgatgtcgcggcgcagtgcgttcg	Protospacer
 ** * ********.**.************. *

28. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_015970 (Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence) position: , mismatch: 6, identity: 0.812

gtggcgctcgatgccgtggcgcag--tgcgtcgg	CRISPR spacer
ctggcgctcgttgccgtgccgcaggatgcgcc--	Protospacer
 ********* ******* *****  ****.*

29. spacer 1.9|1729252|33|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 7, identity: 0.788

aatcaggtc---gtagcgctggttgttcacccagta	CRISPR spacer
---cgcgtcgaggtagggctggttcttcacccagta	Protospacer
   *. ***   **** ******* ***********

30. spacer 1.13|1729514|33|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 7, identity: 0.788

gtcgcaagggcgctggtgcgcgcaaatctgccg	CRISPR spacer
ttcgctgaagcgctggtgcgcgctaacctgccg	Protospacer
 **** ...************** **.******

31. spacer 1.13|1729514|33|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 7, identity: 0.788

gtcgcaagggcgctggtgcgcgcaaatctgccg	CRISPR spacer
ttcgctgaagcgctggtgcgcgctaacctgccg	Protospacer
 **** ...************** **.******

32. spacer 2.5|3985412|31|NC_014500|CRISPRCasFinder matches to NZ_CP009155 (Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

--gtaccgccccgatttagtggtgctggatgat	CRISPR spacer
cgatatag--ccgatgtagtggtgctggatgaa	Protospacer
  .**. *  ***** ****************

33. spacer 3.1|3990788|32|NC_014500|CRISPRCasFinder,CRT matches to NZ_CP023066 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence) position: , mismatch: 7, identity: 0.781

acataaggatcgtggggtggcccaat-cggtat	CRISPR spacer
aggcaatgatcgtggggtggcccgatccggca-	Protospacer
* ..** ****************.** ***.*

34. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 7, identity: 0.781

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
gccttccctggccagctgctcggcggccttga	Protospacer
*..* ******** ****.********* * *

35. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to MK977705 (Gordonia Phage Mollymur, complete genome) position: , mismatch: 7, identity: 0.781

--gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
cgggtcgtc--ggcctgctgttcggcggcgacca	Protospacer
  * *.*.*  ****************** *.**

36. spacer 4.4|4000472|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN694686 (Marine virus AFVG_250M1040, complete genome) position: , mismatch: 7, identity: 0.781

gtttgcttgctcaatcgcagacagtagcgggt--	CRISPR spacer
gtttgattgctccatcgcagaca--aacggtcac	Protospacer
***** ****** **********  *.*** .

37. spacer 4.4|4000472|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN694317 (Marine virus AFVG_250M684, complete genome) position: , mismatch: 7, identity: 0.781

gtttgcttgctcaatcgcagacagtagcgggt--	CRISPR spacer
gtttgattgctccatcgcagaca--aacggtcac	Protospacer
***** ****** **********  *.*** .

38. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to KT887559 (Pseudomonas phage phi3, complete genome) position: , mismatch: 7, identity: 0.781

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
tgcacagccgcgtcgaggttggcatagtcgcc	Protospacer
  *** . ************* ** *******

39. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 7, identity: 0.781

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
atcaccagcgcgacgcggttgtccccggcggc	Protospacer
************ ** *******   * ** *

40. spacer 4.19|4001372|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN693058 (Marine virus AFVG_25M517, complete genome) position: , mismatch: 7, identity: 0.781

---aactggtcatgaagccggtcaaggaagggcga	CRISPR spacer
ccaagccgg---tgcagccggtcaaggaaaggcga	Protospacer
   *.*.**   ** **************.*****

41. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 7, identity: 0.781

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccgtg----ccgatgccgtggcgctgggcgtcgg	Protospacer
    ***    .************** * *******

42. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gacgatcccgatgccctgccgcagtgcgtcgg	Protospacer
*  *  *.******* ** *************

43. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ttggcgctcgatgccgaggcggaggacctctg	Protospacer
 *************** **** ** .* ** *

44. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 7, identity: 0.781

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ccgggtgg----cgatgccgcggcgcagggcgtcgc	Protospacer
    ****    ********.******* ******

45. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 7, identity: 0.781

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ttggcgctcgatgccgaggcggaggacctctg	Protospacer
 *************** **** ** .* ** *

46. spacer 1.4|1728923|32|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to MG592567 (Vibrio phage 1.198.A._10N.286.54.F4, partial genome) position: , mismatch: 8, identity: 0.75

atgggtccgtcaacatcatcaaacattgtcgg	CRISPR spacer
tctgctaggtcatcatcatcaaacattgacgg	Protospacer
 . * *  **** *************** ***

47. spacer 1.4|1728923|32|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to MG592568 (Vibrio phage 1.198.B._10N.286.54.F4, partial genome) position: , mismatch: 8, identity: 0.75

atgggtccgtcaacatcatcaaacattgtcgg	CRISPR spacer
tctgctaggtcatcatcatcaaacattgacgg	Protospacer
 . * *  **** *************** ***

48. spacer 1.5|1728987|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025810 (Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

tgatgtattcggcggtcacgacggatgccgccgg-	CRISPR spacer
tgatgtattcgtcgggcacgacgggca-agccgaa	Protospacer
*********** *** ********...  ****.

49. spacer 1.7|1729121|33|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_048797 (Bacillus phage vB_BmeM-Goe8, complete genome) position: , mismatch: 8, identity: 0.758

tgacgctgttattgagtctgtgtttaacgagct	CRISPR spacer
tgacgctgtaattgagtctgggtttactcataa	Protospacer
********* ********** ***** . *

50. spacer 1.11|1729382|35|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to MK249230 (Blackfly microvirus SF02 isolate 195, complete genome) position: , mismatch: 8, identity: 0.771

ggcggcgatgccgggtatctcattaccaacatcct	CRISPR spacer
accggcgatgccggttatctcattcccatctacgt	Protospacer
. ************ ********* *** *  * *

51. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tcccaacactccgcgtccggttcgccagactg	Protospacer
***     ********.***********.**

52. spacer 2.5|3985412|31|NC_014500|CRISPRCasFinder matches to NZ_CP032704 (Pantoea dispersa strain DSM 32899 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gtaccgccccgatttagtggtgctggatgat	CRISPR spacer
ggcctatggcgatttagtggtgatggatgat	Protospacer
*  *...  ************* ********

53. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018759 (Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
gaccgccctggccagctgttcgtcggcggtct	Protospacer
* ..********* ******** **** .**

54. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

55. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

56. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

57. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

58. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

59. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

60. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

61. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

62. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

63. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NC_019411 (Caulobacter phage CcrSwift, complete genome) position: , mismatch: 8, identity: 0.75

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
ggcggcgagggcctgctggtcggcggccttca	Protospacer
* . **   ********* ********* ***

64. spacer 3.4|3990968|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022994 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtctacgcgttcacgcactgggagtcgcg	CRISPR spacer
cccggcttcgcgttcacgcactgaccgcggag	Protospacer
**** ** ***************.  *. * *

65. spacer 3.6|3991088|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to MN327636 (Pectobacterium phage MA6, complete genome) position: , mismatch: 8, identity: 0.75

gacatcatttacagcggctcactcagcagatc	CRISPR spacer
aatgtcatttacagcgtctaactcagcaacgc	Protospacer
.*..************ ** ********.  *

66. spacer 3.6|3991088|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to MN308080 (Pectobacterium phage MA1A, partial genome) position: , mismatch: 8, identity: 0.75

gacatcatttacagcggctcactcagcagatc	CRISPR spacer
aatgtcatttacagcgtctaactcagcaacgc	Protospacer
.*..************ ** ********.  *

67. spacer 4.4|4000472|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN694326 (Marine virus AFVG_250M910, complete genome) position: , mismatch: 8, identity: 0.75

gtttgcttgctcaatcgcagacagt---agcgggt	CRISPR spacer
gtttgcttcctcaaacgcagacaattcaatca---	Protospacer
******** ***** ********.*   * *.

68. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 8, identity: 0.75

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
caggcccgtcggcacctgggcgccgaggttct	Protospacer
   ******************* ***. **.

69. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 8, identity: 0.75

accgcccgtcggcacctgggcgacgaacttta---	CRISPR spacer
gccgcccgtagccacctgggcgac---cttcggag	Protospacer
.******** * ************   ***..

70. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 8, identity: 0.75

accgcccgtcggcacctgggcgacgaacttta---	CRISPR spacer
gccgcccgtagccacctgggcgac---cttcggag	Protospacer
.******** * ************   ***..

71. spacer 4.12|4000952|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MT553337 (Mycobacterium phage DroogsArmy, complete genome) position: , mismatch: 8, identity: 0.75

tattatccggctttgggatgtacaccggcttc	CRISPR spacer
tgccatccggcttcgggatgtagaccgctgtc	Protospacer
*...*********.******** **** . **

72. spacer 4.12|4000952|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to JF957060 (Mycobacterium phage Timshel, complete genome) position: , mismatch: 8, identity: 0.75

tattatccggctttgggatgtacaccggcttc	CRISPR spacer
tgccatccggcttggggatgtagaccgctgtc	Protospacer
*...********* ******** **** . **

73. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 8, identity: 0.75

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
atcacctgcgcgtcgaggatgtccgggtgggt	Protospacer
****** *********** **** ..** * .

74. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgggcgtcgg	Protospacer
    .**    .************** * *******

75. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

76. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

77. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

78. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.75

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
acgggtgtcgatgccatggcgcattgcgtcga	Protospacer
..**   ********.******* *******.

79. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

80. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgagcgtcgg	Protospacer
    .**    .************** * *******

81. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

82. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

83. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

84. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

85. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

86. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

87. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

88. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgggcgtcgg	Protospacer
    .**    .************** * *******

89. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

90. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

91. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

92. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

93. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

94. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

95. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

96. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgcgcgtcgg	Protospacer
    .**    .************** *.*******

97. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccatg----ccgatgccgtggcgctgagcgtcgg	Protospacer
    .**    .************** * *******

98. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to JF412302 (EBPR siphovirus 1, partial sequence) position: , mismatch: 8, identity: 0.75

-gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
cgcagc-ctcgatgccctggcgcagcgcgtttt	Protospacer
 *..** ********* ********.****.

99. spacer 1.1|1728725|34|NC_014500|CRT matches to NC_008042 (Ruegeria sp. TM1040 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

atttcgtcagcaatcgagacatcctcacggagct	CRISPR spacer
atttcggcagcaatcgacacatcctgtaggccaa	Protospacer
****** ********** *******   **

100. spacer 1.5|1728987|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR134459 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence) position: , mismatch: 9, identity: 0.735

-tgatgtattcggcggtcacgacggatgccgccgg	CRISPR spacer
ccggagca-gcggcggtctcgacgggtgccgccgc	Protospacer
 .*. *.*  ******** ******.********

101. spacer 1.5|1728987|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 9, identity: 0.735

tgatgtattcggcggtcacgacggatgccgccgg	CRISPR spacer
cgagaaattcggcggtctcgacggatgtcggtga	Protospacer
.** . *********** *********.** .*.

102. spacer 1.16|1729710|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gagcgccccagctgttccgcctcgccatactggt	CRISPR spacer
gagcgccgcagctgatccgcctcgcccggggtga	Protospacer
******* ****** ***********  .   *

103. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KX781992 (Mycobacterium phage Gabriel, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

104. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK112554 (Mycobacterium phage TinyTim, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

105. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MN234193 (Mycobacterium phage Kboogie, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

106. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK450432 (Mycobacterium phage ValleyTerrace, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

107. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359364 (Mycobacterium phage ChickenPhender, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

108. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MH697586 (Mycobacterium phage InigoMontoya, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

109. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK112549 (Mycobacterium phage Morizzled23, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

110. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359347 (Mycobacterium phage Ading, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

111. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MG812493 (Mycobacterium phage NuevoMundo, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

112. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359339 (Mycobacterium phage Naija, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

113. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359333 (Mycobacterium phage JustHall, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

114. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KT321476 (Mycobacterium phage Zeenon, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

115. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MN428065 (Mycobacterium phage Cactojaque, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

116. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MN735434 (Mycobacterium phage Mangeria, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

117. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to JN699625 (Mycobacterium phage Wally, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

118. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KX721255 (Mycobacterium phage Yucca, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

119. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359366 (Mycobacterium phage Basquiat, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

120. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359346 (Mycobacterium phage NoodleTree, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

121. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to JN699013 (Mycobacterium phage Pio, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

122. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359361 (Mycobacterium phage Darko, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

123. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359348 (Mycobacterium phage Rahel, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

124. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MH779498 (Mycobacterium phage Bread, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

125. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MT818423 (Mycobacterium phage Janiyra, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

126. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MH316567 (Mycobacterium phage ParkTD, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

127. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to AY129337 (Mycobacteriophage Bxz1, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

128. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KX721256 (Mycobacterium phage Erdmann, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

129. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359335 (Mycobacterium phage Patter, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

130. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to EU826467 (Mycobacterium phage Rizal, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

131. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MT723944 (Mycobacterium phage ChaylaJr, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

132. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KR080196 (Mycobacterium phage Momo, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

133. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359318 (Mycobacterium phage Specks, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

134. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KF024734 (Mycobacterium phage Shrimp, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

135. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MH825697 (Mycobacterium phage Bangla1971, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

136. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359338 (Mycobacterium phage Amataga, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

137. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359350 (Mycobacterium phage Nidhogg, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

138. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MT723945 (Mycobacterium phage Quasimodo, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

139. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359342 (Mycobacterium phage ShiaLabeouf, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

140. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK450422 (Mycobacterium phage RoMag, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

141. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to JF704116 (Mycobacterium phage Drazdys, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

142. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359336 (Mycobacterium phage Chargie21, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

143. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK112534 (Mycobacterium phage Burrough, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

144. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359334 (Mycobacterium phage Delilah, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

145. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MN276192 (Mycobacterium phage Trinitium, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

146. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359324 (Mycobacterium phage Tortoise16, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

147. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359349 (Mycobacterium phage FoxtrotP1, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

148. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to JF704096 (Mycobacterium phage Ghost, complete sequence) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

149. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359344 (Mycobacterium phage Napoleon13, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

150. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359363 (Mycobacterium phage Fludd, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

151. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to NC_004687 (Mycobacterium phage Bxz1, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

152. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to NC_011270 (Mycobacterium phage Spud, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

153. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359321 (Mycobacterium phage Phusco, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

154. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359362 (Mycobacterium phage Atlantean, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

155. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to EU826469 (Mycobacterium phage ScottMcG, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

156. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK310143 (Mycobacterium phage Dietrick, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

157. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK878897 (Mycobacterium phage Blackbrain, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

158. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359330 (Mycobacterium phage Iota, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

159. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KT365398 (Mycobacterium phage DTDevon, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

160. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KX369583 (Mycobacterium phage Littleton, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

161. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KT365400 (Mycobacterium phage ErnieJ, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

162. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KC691257 (Mycobacterium phage Astraea, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

163. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MG872839 (Mycobacterium phage LifeSavor, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

164. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KC748968 (Mycobacterium phage Gizmo, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

165. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to KC748970 (Mycobacterium phage ArcherS7, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

166. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359353 (Mycobacterium phage BadAgartude, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

167. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MH697590 (Mycobacterium phage Phlegm, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

168. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MN428066 (Mycobacterium phage JPickles, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

169. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to DQ398053 (Mycobacteriophage Catera, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

170. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to JN699626 (Mycobacterium phage MoMoMixon, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

171. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK450424 (Mycobacterium phage Melpomini, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

172. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MN183285 (Mycobacterium phage YoungMoneyMata, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

173. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MF919493 (Mycobacterium phage Audrick, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

174. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to NC_008207 (Mycobacterium phage Catera, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

175. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to JN624850 (Mycobacterium phage Pleione, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

176. spacer 2.4|3985352|32|NC_014500|PILER-CR,CRISPRCasFinder matches to MK359326 (Mycobacterium phage Pivoine, complete genome) position: , mismatch: 9, identity: 0.719

tccgtcgcctccgcgttcggttcgccaggctc	CRISPR spacer
tccgtctcccccgcgttcggttcgtgggaaag	Protospacer
****** **.**************. .*.

177. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 9, identity: 0.719

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
gctggcgctggcttgctgttcggcggcgccgt	Protospacer
*.* ** *****.**************  .

178. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049320 (Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence) position: , mismatch: 9, identity: 0.719

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
gctggcgctggcttgctgttcggcggcgccgt	Protospacer
*.* ** *****.**************  .

179. spacer 4.1|4000292|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atgactgttgcggcaccagggtcagacgcaag	CRISPR spacer
atgactgttgcggcaatagggtcaacccatga	Protospacer
*************** .*******. *   ..

180. spacer 4.2|4000352|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 9, identity: 0.719

tgaccgccgccgatggtttcgattatcgaatc	CRISPR spacer
cttctgccgtcgatcgtttcgattatcgtcac	Protospacer
.  *.****.**** *************   *

181. spacer 4.2|4000352|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 9, identity: 0.719

tgaccgccgccgatggtttcgattatcgaatc	CRISPR spacer
cttctgccgtcgatcgtttcgattatcgtcac	Protospacer
.  *.****.**** *************   *

182. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to KU998254 (Gordonia phage Kampe, complete genome) position: , mismatch: 9, identity: 0.719

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagaaccggtacgcactgcgccagcagcag	Protospacer
 **********.******.*****.*.* ...

183. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to KU998252 (Gordonia phage PatrickStar, complete genome) position: , mismatch: 9, identity: 0.719

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagaaccggtacgcactgcgccagcagcag	Protospacer
 **********.******.*****.*.* ...

184. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_030915 (Gordonia phage Orchid, complete genome) position: , mismatch: 9, identity: 0.719

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagaaccggtacgcactgcgccagcagcag	Protospacer
 **********.******.*****.*.* ...

185. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034812 (Paracoccus sp. Arc7-R13 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
accgcccctcgccacctgggcgaccggggctg	Protospacer
******* *** ************ ..  .*.

186. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 9, identity: 0.719

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
accgcccttcggcacctgtgcgatgtcagatg	Protospacer
******* ********** ****.*     *.

187. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ggctgggcggatgccgtggcgcggggcgtcgg	Protospacer
*    * . *************.* *******

188. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccattccgatgccgtggcgctgcgcgtcgg	Protospacer
*     ..************** *.*******

189. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gaccattccgatgccgtggcgctgcgcgtcgg	Protospacer
*     ..************** *.*******

190. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_018023 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.02, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ccggactcggatggcgcggcgcagtgcgtcgg	Protospacer
 .**  .. **** **.***************

191. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN586029 (Mycobacterium phage Hannaconda, complete genome) position: , mismatch: 9, identity: 0.719

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
gtggcgctcgatggcgcggcgcaacagatggt	Protospacer
************* **.******... .* *

192. spacer 1.3|1728857|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 10, identity: 0.706

ggacctggggcgcgcaacccggcgcttctctgtt	CRISPR spacer
gggactggggcgcgaaatccggcgcttccggccc	Protospacer
**. ********** **.**********.   ..

193. spacer 1.4|1728923|32|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013115 (Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence) position: , mismatch: 10, identity: 0.688

atgggtccgtcaacatcatcaaacattgtcgg	CRISPR spacer
gtgggtccatcatcatcatcaaactgcatttc	Protospacer
.*******.*** ***********  ..*.

194. spacer 1.5|1728987|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_017771 (Deinococcus gobiensis I-0 plasmid P3, complete sequence) position: , mismatch: 10, identity: 0.706

tgatgtattc----ggcggtcacgacggatgccgccgg	CRISPR spacer
----gcgaccgggaggcggccatgacggatgccgccgg	Protospacer
    *.. .*    *****.**.***************

195. spacer 1.16|1729710|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021816 (Sinorhizobium meliloti strain M270 plasmid accessoryB, complete sequence) position: , mismatch: 10, identity: 0.706

gagcgccccagctgttccgcctcgccatactggt	CRISPR spacer
gcgcgccgcagctggtccgcctcgccggccgtaa	Protospacer
* ***** ****** ***********.  *  .

196. spacer 1.22|1730110|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to MT701588 (Klebsiella phage Metamorpho, complete genome) position: , mismatch: 10, identity: 0.706

tgtatctagtgttatctttaacttcattttttat	CRISPR spacer
cgatgaagatgttatctttaacttcatttgctat	Protospacer
.*     ..******************** .***

197. spacer 3.2|3990848|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 10, identity: 0.688

gtttgccctggcctgctgttcggcggccatca	CRISPR spacer
cagaaacctggcatgctgtccggcggccagcg	Protospacer
    . ****** ******.********* *.

198. spacer 4.1|4000292|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_010474 (Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequence) position: , mismatch: 10, identity: 0.688

atgactgttgcggcaccagggtcagacgcaag	CRISPR spacer
gtgactgttgcggcaatagggtcaacccatga	Protospacer
.************** .*******. *   ..

199. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to HG796220 (Burkholderia phage Bp-AMP3 complete genome) position: , mismatch: 10, identity: 0.688

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagcagcggcacgcaccgcgccaagctgct	Protospacer
 **** * ****************..  *

200. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN191861 (Burkholderia phage AMP1, complete genome) position: , mismatch: 10, identity: 0.688

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagcagcggcacgcaccgcgccaagctgct	Protospacer
 **** * ****************..  *

201. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to HG796219 (Burkholderia phage Bp-AMP2 complete genome) position: , mismatch: 10, identity: 0.688

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagcagcggcacgcaccgcgccaagctgct	Protospacer
 **** * ****************..  *

202. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_047743 (Burkholderia phage Bp-AMP1 complete genome) position: , mismatch: 10, identity: 0.688

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagcagcggcacgcaccgcgccaagctgct	Protospacer
 **** * ****************..  *

203. spacer 4.5|4000532|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to HG796221 (Burkholderia phage Bp-AMP4 complete genome) position: , mismatch: 10, identity: 0.688

agcagaaccggcacgcaccgcgccggtattga	CRISPR spacer
cgcagcagcggcacgcaccgcgccaagctgct	Protospacer
 **** * ****************..  *

204. spacer 4.6|4000592|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

agaaatattgatggcgcgcgactccttgggga	CRISPR spacer
cttgcggttgatggcgcgggcctccttggggt	Protospacer
   .  .*********** * **********

205. spacer 4.8|4000712|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048636 (Rhizobium oryzihabitans strain M15 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.688

taaacgccactggctctttcgccgccctgtca	CRISPR spacer
cttgggaaactggctccttcgccgccctttct	Protospacer
.  . *  ********.*********** **

206. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

207. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

208. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

209. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

210. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
cagggccgccggcagctgggcgacgaacccat	Protospacer
   * ***.***** *************..

211. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

212. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

213. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
cacctccgccggcacctgggcgaggaaccgct	Protospacer
  * .***.************** ****. .

214. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
gccgcccgtcggccgctgggcgaccgcccgcc	Protospacer
.************  ********* . *. .

215. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MN062717 (Microbacterium phage Sharkboy, complete genome) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
agtcaccgtcgccacctgggcgatgaacaccg	Protospacer
* .  ****** ***********.**** ...

216. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_042099 (Microbacterium phage Dismas, complete genome) position: , mismatch: 10, identity: 0.688

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
agtcaccgtcgccacctgggcgatgaacaccg	Protospacer
* .  ****** ***********.**** ...

217. spacer 4.17|4001252|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcaccagcgcgtcgaggttgtcaaagtcgcc	CRISPR spacer
tcggccagcgcgtcgaggctgtcgaaggtgaa	Protospacer
 . .**************.****.*** .*

218. spacer 4.19|4001372|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_023694 (Rhodococcus phage ReqiPoco6, complete genome) position: , mismatch: 10, identity: 0.688

aactggtcatgaagccggtcaaggaagggcga	CRISPR spacer
cgtcggtcattaagccgatcaaggaagcgttc	Protospacer
 ...****** ******.********* *.

219. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ggtcttctcgatgccgtcgcgctgtgcgtgca	Protospacer
*   . *********** **** ******  .

220. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
ggtcttctcgatgccgtcgcgctgtgcgtgca	Protospacer
*   . *********** **** ******  .

221. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 10, identity: 0.688

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
cctggttctgatggcgcggcgcagtgcgtcgg	Protospacer
 . *  ...**** **.***************

222. spacer 4.20|4001432|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028965 (Burkholderia sp. IDO3 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

gtggcgctcgatgccgtggcgcagtgcgtcgg	CRISPR spacer
tcgacgctcgatgccgcggcgctgtgcaagat	Protospacer
 .*.************.***** ****.  .

223. spacer 4.21|4001492|32|NC_014500|CRT matches to NZ_CP015008 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA03, complete sequence) position: , mismatch: 10, identity: 0.688

ctcaactgagcgagttatgtgacctgcaaaat	CRISPR spacer
gcatggggagcgagtgacgtgacctgcaaaag	Protospacer
 .  .  ******** *.*************

224. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KX452700 (UNVERIFIED: Enterobacter phage KPN7 genomic sequence) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcagtgacgtggtgtatcgagaacgtggacac	Protospacer
  .. .**** **********.******** *.

225. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KR296691 (Salmonella phage 37, complete genome) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcagtgacgtggtgtatcgagaacgtggacac	Protospacer
  .. .**** **********.******** *.

226. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KX452699 (UNVERIFIED: Salmonella phage KPN6 genomic sequence) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcagtgacgtggtgtatcgagaacgtggacac	Protospacer
  .. .**** **********.******** *.

227. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KX765862 (Salmonella phage ST-101, complete genome) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgctgtgacgtggtgtatcgagaacgtggacac	Protospacer
  ....**** **********.******** *.

228. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KX765864 (Salmonella phage ST-374, complete genome) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgctgtgacgtggtgtatcgagaacgtggacac	Protospacer
  ....**** **********.******** *.

229. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KC139515 (Salmonella phage FSL SP-124, complete genome) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcggtgacgtggtgtatcgagaacgtggacac	Protospacer
  .. .**** **********.******** *.

230. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to MN871450 (UNVERIFIED: Serratia phage KpYy_1_41, complete genome) position: , mismatch: 11, identity: 0.676

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcagtgacgtggtgtatcgagaacgtggacac	Protospacer
  .. .**** **********.******** *.

231. spacer 3.12|3991448|32|NC_014500|CRISPRCasFinder,CRT,PILER-CR matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 11, identity: 0.656

atccagcgtatcgagcgtgtgggtgtaatccg	CRISPR spacer
cctactcgtaaagagcgtgtgggtgtaattgc	Protospacer
 ..   ****  *****************.

232. spacer 4.11|4000892|32|NC_014500|PILER-CR,CRISPRCasFinder,CRT matches to MH045568 (Microbacterium phage Kieran, complete genome) position: , mismatch: 11, identity: 0.656

accgcccgtcggcacctgggcgacgaacttta	CRISPR spacer
cgtcaccgtcgccacctgggcgatgaacaccg	Protospacer
  .  ****** ***********.**** ...

233. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to KR296689 (Salmonella phage 35, complete genome) position: , mismatch: 12, identity: 0.647

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcagtgacgtggtgtatcgagaacgtggagca	Protospacer
  .. .**** **********.********   .

234. spacer 1.26|1730374|34|NC_014500|CRT,PILER-CR,CRISPRCasFinder matches to NC_021780 (Salmonella phage FSL SP-088, complete genome) position: , mismatch: 12, identity: 0.647

cgatcatgacctggtgtatcgggaacgtggtcgg	CRISPR spacer
acgcggtgacgtggtgtatcgagaacgtggatac	Protospacer
  .. .**** **********.******** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

177823 : 193465

Erwinia_phage(66.67%)

tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013315863.1\|177823_178288_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_033111511.1\|178342_178933_+	hypothetical protein	NA	NA	NA	NA
WP_013315865.1\|178968_179742_-	DUF3142 domain-containing protein	NA	NA	NA	NA
WP_013315866.1\|179711_181913_-	hypothetical protein	NA	NA	NA	NA
WP_013315867.1\|182149_183523_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	2.9e-16	25.0
WP_013315868.1\|183539_184238_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	4.8e-07	32.0
WP_013315869.1\|184448_185009_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_033111512.1\|185219_185708_-	hypothetical protein	NA	NA	NA	NA
WP_013315872.1\|187675_188968_+\|tail	phage tail protein	F1BUP1	Erwinia_phage	3.3e-70	42.1
WP_013315873.1\|188976_189354_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_033111513.1\|189605_190790_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	5.6e-101	52.8
WP_033111514.1\|190789_191410_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_033111515.1\|191714_193073_+\|tail	phage tail protein	F1BUP1	Erwinia_phage	7.9e-75	54.3
WP_013315877.1\|193069_193465_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	7.3e-13	46.1

DBSCAN-SWA_2

296711 : 354637

uncultured_Caudovirales_phage(15.38%)

tRNA,integrase,tail,protease

attL 296666:296687|attR 307297:307318

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
296666:296687	attL	NA	NA	NA	NA
WP_013315966.1\|296711_297932_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	7.6e-210	84.4
WP_013315967.1\|297931_298669_+	hypothetical protein	NA	NA	NA	NA
WP_033111530.1\|298759_298984_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	3.1e-21	67.2
WP_033111531.1\|299095_299290_-	hypothetical protein	NA	NA	NA	NA
WP_013315970.1\|299479_299701_+	hypothetical protein	NA	NA	NA	NA
WP_013315971.1\|299693_299909_+	hypothetical protein	NA	NA	NA	NA
WP_013315972.1\|299905_301675_+	DNA primase	Q7M2A8	Enterobacteria_phage	5.4e-132	45.8
WP_033111532.1\|302075_302255_+	hypothetical protein	NA	NA	NA	NA
WP_033111533.1\|302251_304177_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	6.8e-205	55.4
WP_052303353.1\|304406_307235_+\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	9.2e-134	38.1
WP_012883002.1\|307384_307681_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
307297:307318	attR	NA	NA	NA	NA
WP_013315975.1\|307704_308670_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_013315976.1\|309022_309910_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_013315977.1\|309924_311376_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_013315978.1\|311365_311608_-	YhdT family protein	NA	NA	NA	NA
WP_013315979.1\|311801_313145_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_013315980.1\|313156_313582_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_029456545.1\|313617_314070_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_013315982.1\|314308_314908_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_013315983.1\|314974_315976_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_013315984.1\|316195_317182_-	oxidoreductase	NA	NA	NA	NA
WP_013315985.1\|317345_319292_+	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_012883014.1\|319606_320650_+	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	5.1e-05	22.3
WP_013315987.1\|320753_321890_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_013315988.1\|321886_322375_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_013315989.1\|322399_322993_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_013315990.1\|322982_324452_+	ribonuclease G	NA	NA	NA	NA
WP_033112187.1\|324562_328399_+	AsmA2 domain-containing protein YhdP	NA	NA	NA	NA
WP_013315992.1\|328445_329891_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_013315993.1\|329979_330924_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_013315994.1\|331262_331466_+	AaeX family protein	NA	NA	NA	NA
WP_081441322.1\|331497_332421_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_033112188.1\|332434_334384_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_033111535.1\|334390_334891_-	DUF1543 domain-containing protein	NA	NA	NA	NA
WP_013315998.1\|335007_335634_+	LysE family transporter	NA	NA	NA	NA
WP_013315999.1\|336037_336586_-	ribosome-associated protein	NA	NA	NA	NA
WP_033111536.1\|336776_338117_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_013316001.1\|338183_338594_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_013316002.1\|338774_339047_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_013316003.1\|339043_339898_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.9e-06	29.3
WP_013316004.1\|340046_340535_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_013316005.1\|340628_340916_-	ribosome hibernation promoting factor	NA	NA	NA	NA
WP_013316006.1\|340940_342374_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_013316007.1\|342421_343147_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-22	27.9
WP_013316008.1\|343162_343741_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_013316009.1\|343718_344288_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_013316010.1\|344284_344851_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	3.8e-71	99.3
WP_013316011.1\|344900_345887_-	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	4.0e-36	29.2
WP_013316012.1\|345917_346880_-	calcium/sodium antiporter	NA	NA	NA	NA
WP_013316013.1\|347161_347971_+	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	6.3e-19	30.2
WP_013316014.1\|347974_348757_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_013316015.1\|348761_349385_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_013316016.1\|349402_350056_+	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_013316017.1\|350048_350351_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_013316018.1\|350483_350738_+	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_013316019.1\|350795_352058_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_013316020.1\|352116_353178_-	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IT49	uncultured_Mediterranean_phage	2.6e-25	29.1
WP_013316021.1\|353266_354637_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.7e-22	29.0

DBSCAN-SWA_3

915451 : 948193

Cronobacter_phage(67.74%)

integrase,capsid,plate,portal,terminase,head,tail,holin

attL 909903:909918|attR 937078:937093

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
909903:909918	attL	NA	NA	NA	NA
WP_013316546.1\|915451_916543_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.3e-157	75.5
WP_033111639.1\|916650_917022_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.4e-29	53.2
WP_033111640.1\|916999_918073_-	acetyltransferase	Q6SE88	Lactobacillus_prophage	7.7e-65	39.1
WP_033111641.1\|918074_918857_-	hypothetical protein	NA	NA	NA	NA
WP_033112222.1\|918860_919712_-	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	5.0e-35	40.3
WP_013316550.1\|920172_920394_+	hypothetical protein	NA	NA	NA	NA
WP_013316551.1\|920426_920936_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	2.4e-48	55.8
WP_167535238.1\|921032_921188_+	hypothetical protein	NA	NA	NA	NA
WP_013316553.1\|921200_921530_+	hypothetical protein	NA	NA	NA	NA
WP_013316554.1\|921600_921828_+	DUF2732 domain-containing protein	NA	NA	NA	NA
WP_012883471.1\|921827_922151_+	DUF5405 family protein	NA	NA	NA	NA
WP_013316555.1\|922147_924190_+	replication endonuclease	F1BUM9	Cronobacter_phage	7.4e-234	61.8
WP_042318135.1\|924556_925606_-	Fic family protein	S4TP71	Salmonella_phage	1.8e-119	63.5
WP_158305115.1\|926083_926239_+	hypothetical protein	NA	NA	NA	NA
WP_193345740.1\|926245_926512_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.4e-36	83.0
WP_013316558.1\|926565_927615_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.8e-159	79.7
WP_013316559.1\|927590_929366_-	hypothetical protein	F1BUM5	Cronobacter_phage	2.8e-269	76.2
WP_148226863.1\|929522_930359_+\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	2.1e-57	58.3
WP_033111643.1\|930413_931445_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.5e-154	81.7
WP_013316562.1\|931448_932150_+\|terminase	terminase	F1BUM0	Cronobacter_phage	7.5e-69	58.2
WP_042318140.1\|932246_932699_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.6e-54	71.3
WP_013316564.1\|932695_933193_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.5e-34	43.8
WP_013316565.1\|933189_933894_+	hypothetical protein	F1BUL6	Cronobacter_phage	2.3e-86	70.1
WP_013316566.1\|933896_935012_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	3.4e-140	68.3
WP_012883485.1\|935008_935464_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	4.1e-52	64.9
WP_013316567.1\|935472_935778_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	2.9e-17	54.1
WP_033111644.1\|935764_936106_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	3.1e-44	82.2
WP_033111645.1\|936105_936462_+	hypothetical protein	NA	NA	NA	NA
WP_012883490.1\|936594_936852_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	8.9e-20	60.5
WP_013316571.1\|937039_939004_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.8e-192	52.6
937078:937093	attR	NA	NA	NA	NA
WP_033111646.1\|939003_939333_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	5.6e-35	67.3
WP_013316573.1\|939329_940514_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	9.4e-157	69.8
WP_013316574.1\|940506_941139_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.4e-58	62.5
WP_013316575.1\|941147_942569_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	3.7e-75	49.6
WP_013316576.1\|942568_943189_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.0e-29	36.3
WP_013316577.1\|943185_943911_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.5e-35	36.1
WP_013316578.1\|943882_944410_+	hypothetical protein	F1BUJ9	Cronobacter_phage	4.5e-50	58.8
WP_013316579.1\|944413_946066_+	hypothetical protein	F1BUJ7	Cronobacter_phage	9.4e-171	58.4
WP_071819869.1\|946243_946435_+	hypothetical protein	NA	NA	NA	NA
WP_012883501.1\|946616_947123_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_013316581.1\|947710_948193_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.7e-30	48.1

DBSCAN-SWA_4

2586468 : 2596065

Tupanvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013318076.1\|2586468_2587293_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	6.1e-70	53.8
WP_081441353.1\|2587392_2588286_+	aromatic amino acid DMT transporter YddG	NA	NA	NA	NA
WP_033112325.1\|2588359_2588767_+	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_012769674.1\|2588785_2589085_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_013318079.1\|2589088_2591476_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.1e-05	25.8
WP_013318080.1\|2591491_2592475_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	39.0
WP_106120997.1\|2592654_2592699_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_012769671.1\|2592896_2593253_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_013318081.1\|2593296_2593494_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_013318082.1\|2593590_2594133_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	7.4e-16	32.5
WP_013318083.1\|2594136_2596065_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.6e-129	37.1

DBSCAN-SWA_5

2700707 : 2805484

Escherichia_phage(30.3%)

transposase,plate,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148226855.1\|2700707_2702068_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.0e-78	54.8
WP_013318179.1\|2702156_2703305_-	L-threonine dehydrogenase	NA	NA	NA	NA
WP_107768306.1\|2703675_2704146_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_013318181.1\|2704217_2704895_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_013318182.1\|2704894_2705614_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_013318183.1\|2705610_2707173_-	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	5.4e-19	39.7
WP_013318184.1\|2707172_2710943_-	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_013318185.1\|2711271_2712162_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013318186.1\|2712266_2713286_+	CAR family subclass B3 metallo-beta-lactamase	NA	NA	NA	NA
WP_013318187.1\|2713377_2714769_-	NarK family nitrate/nitrite MFS transporter	NA	NA	NA	NA
WP_013318188.1\|2715189_2717001_+	nitrate/nitrite two-component system sensor histidine kinase NarX	NA	NA	NA	NA
WP_013318189.1\|2716993_2717641_+	two-component system response regulator NarL	NA	NA	NA	NA
WP_013318190.1\|2717900_2719169_+	acyltransferase	NA	NA	NA	NA
WP_013318191.1\|2719390_2720446_+	DUF481 domain-containing protein	NA	NA	NA	NA
WP_013318192.1\|2720595_2722617_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	2.3e-86	34.5
WP_013318193.1\|2722636_2723368_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_013318194.1\|2723452_2723959_-	GAF domain-containing protein	NA	NA	NA	NA
WP_033111897.1\|2724269_2725508_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_013318196.1\|2725524_2728155_+	MCE family protein	NA	NA	NA	NA
WP_013318197.1\|2728264_2729713_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033111898.1\|2730080_2730272_+	YebW family protein	NA	NA	NA	NA
WP_033111899.1\|2730481_2732479_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_171849480.1\|2733073_2733886_-	helix-turn-helix domain-containing protein	Q6K1G0	Salmonella_virus	6.6e-85	55.6
WP_013318201.1\|2734040_2734511_+	hypothetical protein	NA	NA	NA	NA
WP_042318392.1\|2734507_2735056_+	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	1.7e-36	47.9
WP_033111901.1\|2735175_2735391_+	DUF2732 family protein	NA	NA	NA	NA
WP_013318204.1\|2735390_2735615_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	4.1e-13	52.1
WP_013318205.1\|2735711_2737838_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	2.5e-176	46.7
WP_013318206.1\|2737901_2738123_+	hypothetical protein	NA	NA	NA	NA
WP_013318207.1\|2738716_2738920_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	9.2e-20	65.7
WP_013318208.1\|2738995_2739457_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	5.1e-26	44.4
WP_033111902.1\|2739884_2740547_+	hypothetical protein	NA	NA	NA	NA
WP_033111903.1\|2740693_2741335_+\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	8.1e-70	62.4
WP_013318211.1\|2741331_2741682_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	9.3e-36	62.9
WP_013318212.1\|2741686_2742595_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	6.0e-119	73.5
WP_013318213.1\|2742587_2743199_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.1e-73	66.7
WP_013318214.1\|2743554_2744760_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.4e-107	46.8
WP_013318215.1\|2744945_2746301_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_013318217.1\|2746475_2747822_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_013318219.1\|2748256_2748823_-	DNA endonuclease SmrA	NA	NA	NA	NA
WP_033111904.1\|2749021_2749507_-\|tail	tail fiber protein	M1TAS6	Escherichia_phage	2.0e-36	51.9
WP_013318220.1\|2749531_2750101_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.3e-76	77.6
WP_013318221.1\|2750272_2750965_+\|tail	tail fiber protein	M1TAS6	Escherichia_phage	1.4e-27	42.5
WP_033112335.1\|2750967_2751579_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	1.6e-22	32.6
WP_013318223.1\|2751802_2752972_+\|tail	phage tail sheath protein	S4TRX2	Salmonella_phage	2.3e-187	82.9
WP_013318224.1\|2752986_2753505_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	9.4e-77	77.9
WP_013318225.1\|2753565_2753856_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.3e-22	60.9
WP_100849676.1\|2753852_2754008_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	4.4e-14	74.5
WP_033111905.1\|2754000_2755092_+	hypothetical protein	NA	NA	NA	NA
WP_013318228.1\|2755103_2755598_+\|tail	phage tail protein	Q6K1G5	Salmonella_virus	1.6e-41	58.7
WP_013318229.1\|2755594_2756773_+	hypothetical protein	Q6K1G4	Salmonella_virus	1.9e-77	42.7
WP_012769529.1\|2756869_2757061_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	6.8e-17	66.7
WP_013318231.1\|2757458_2758775_+	guanine deaminase	NA	NA	NA	NA
WP_013318232.1\|2759087_2760902_+	diguanylate cyclase	NA	NA	NA	NA
WP_013318233.1\|2761152_2762838_+	Tar ligand binding domain-containing protein	NA	NA	NA	NA
WP_013318235.1\|2763865_2765410_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	5.4e-35	48.8
WP_013318236.1\|2765477_2765777_-	hypothetical protein	NA	NA	NA	NA
WP_013318237.1\|2766127_2766814_-	metallophosphoesterase	M9P0E4	Enterobacteria_phage	4.4e-74	58.3
WP_013318238.1\|2766947_2768222_+	chloride channel protein	NA	NA	NA	NA
WP_013318239.1\|2768270_2769872_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033111906.1\|2769964_2770648_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.1e-19	28.7
WP_013318241.1\|2770640_2771489_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_013318242.1\|2771475_2772345_-	ABC transporter permease	NA	NA	NA	NA
WP_042318400.1\|2772341_2773382_-	ABC transporter permease	NA	NA	NA	NA
WP_013318244.1\|2773523_2774201_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_013318246.1\|2774760_2775861_+	sodium-potassium/proton antiporter ChaA	NA	NA	NA	NA
WP_013318247.1\|2776133_2777843_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	8.0e-32	26.7
WP_033111907.1\|2777904_2778345_-	hypothetical protein	NA	NA	NA	NA
WP_013318249.1\|2778584_2779337_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_013318250.1\|2779333_2780689_+	two-component system sensor histidine kinase RstB	NA	NA	NA	NA
WP_013318251.1\|2780764_2781349_+	acid resistance repetitive basic protein Asr	NA	NA	NA	NA
WP_013318252.1\|2781694_2782513_+\|protease	serine protease	NA	NA	NA	NA
WP_013318253.1\|2782823_2784374_+	L-lactate permease	NA	NA	NA	NA
WP_013318254.1\|2784457_2785177_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_013318255.1\|2785188_2786610_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_033112337.1\|2786609_2787305_+	lactate utilization protein C	NA	NA	NA	NA
WP_013318257.1\|2787405_2791293_-	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	9.0e-55	26.6
WP_013318258.1\|2791651_2792257_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_013318259.1\|2792371_2792629_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_013318260.1\|2792653_2795257_-	YdbH family protein	NA	NA	NA	NA
WP_013318261.1\|2795562_2797116_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	5.6e-40	55.1
WP_013318262.1\|2797322_2798315_+	2-hydroxyacid dehydrogenase	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	8.4e-66	41.3
WP_033111909.1\|2798361_2798640_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_013318264.1\|2798955_2800920_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_013318265.1\|2801045_2801543_-	hypothetical protein	NA	NA	NA	NA
WP_013318268.1\|2804542_2805484_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	6.4e-140	92.2

DBSCAN-SWA_6

3552763 : 3560548

Thermus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013316701.1\|3552763_3553753_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.1e-20	29.5
WP_013318960.1\|3554085_3555381_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.4e-33	36.4
WP_013318961.1\|3555479_3555680_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_013318962.1\|3555691_3556027_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_013318963.1\|3556028_3557879_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.0e-104	40.8
WP_013318964.1\|3557958_3558477_-	co-chaperone HscB	NA	NA	NA	NA
WP_013318965.1\|3558574_3558898_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.2e-21	47.7
WP_013318966.1\|3558925_3559309_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.4e-53	77.8
WP_013318967.1\|3559333_3560548_-	cysteine desulfurase	A0A1X7C038	Faustovirus	7.2e-35	32.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014500

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection