CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_014504	Gloeothece verrucosa PCC 7822 plasmid Cy782205, complete sequence	0 crisprs	c2c9_V-U4,cas14j	0	0	0
NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	6 crisprs	cmr3gr5,cmr4gr7,cmr5gr11,cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL,2OG_CAS,csx18,cas8b3,c2c9_V-U4,cmr6gr7,cas10	0	118	2
NC_014501	Gloeothece verrucosa PCC 7822, complete sequence	17 crisprs	DEDDh,DinG,PD-DExK,c2c9_V-U4,cas14k,cas3,cas14j,Cas14c_CAS-V-F,csa3,RT,Cas9_archaeal,Cas14b_CAS-V-F,csx3,csx1	3	6	2
NC_014535	Gloeothece verrucosa PCC 7822 plasmid Cy782206, complete sequence	0 crisprs	NA	0	0	0
NC_014503	Gloeothece verrucosa PCC 7822 plasmid Cy782204, complete sequence	1 crisprs	cas14j	0	1	0
NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	1 crisprs	DEDDh,cas3	0	2	1
NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	8 crisprs	RT,Cas9_archaeal,cas14j,cas1,cas2,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas5,cas7,cas8b3,cas6,PD-DExK,c2c5_V-U5	0	20	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014534_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_1

125521-125703

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
AAGTGATCAACGCTTTACAGCATCAAAGGTTAAAGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_014534_1

>merge|NC_014534|1|125521-125703|CRISPRCasFinder
AAGTGATCAACGCTTTACAGCATCAAAGGTTAAAGCACAGGATGATAAAGGTAAAACTAAGTCTATTTTAGGAAGTGATCAACGCTTTACAGCATCAAAGGTTAAAGCACTCTCATAATCGTCCATTTCTTCTAATTTTTTTGTCCGGTGATCAACGCCTTGCGGCATCAAAGGTTAAAGCAC

>NC_014534|1|1|125521-125703|CRISPRCasFinder
AAGTGATCAACGCTTTACAGCATCAAAGGTTAAAGCAC	AGGATGATAAAGGTAAAACTAAGTCTATTTTAGG
AAGTGATCAACGCTTTACAGCATCAAAGGTTAAAGCAC	TCTCATAATCGTCCATTTCTTCTAATTTTTTTGTC
CGGTGATCAACGCCTTGCGGCATCAAAGGTTAAAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334844.1\|116728_117298_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334843.1\|115815_116637_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334849.1\|128803_129265_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334854.1\|132737_133055_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334840.1\|113548_115042_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NC_014534.1\|WP_013334841.1\|115019_115361_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_041934246.1\|126409_126613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270687
NC_014534.1\|WP_013334839.1\|112798_113524_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334851.1\|129786_130278_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_049802790.1\|125861_126077_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379256
NC_014534.1\|WP_013334848.1\|127974_128613_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_014534.1\|WP_013334853.1\|132375_132741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227837
NC_014534.1\|WP_013334842.1\|115357_115819_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334847.1\|125039_125390_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334852.1\|131470_132310_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_014534.1\|WP_013334845.1\|117287_118811_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NC_014534.1\|WP_049802793.1\|130686_131196_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|273793
NC_014534.1\|WP_013334850.1\|129338_129716_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180986
NC_014534.1\|WP_157872025.1\|111896_112802_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334846.1\|119036_125000_-\|ribonuclease-H	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334848.1\|127974_128613_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.06265e-23
NC_014534.1\|WP_013334853.1\|132375_132741_-\|hypothetical-protein	gnl\|CDD\|227837	COG5550, COG5550, Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones].	3.0225e-12
NC_014534.1\|WP_013334852.1\|131470_132310_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.52257e-89
NC_014534.1\|WP_041934246.1\|126409_126613_+\|hypothetical-protein	gnl\|CDD\|270687	cd05117, STKc_CAMK, The catalytic domain of CAMK family Serine/Threonine Kinases. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. CaMKs are multifunctional calcium and calmodulin (CaM) stimulated STKs involved in cell cycle regulation. There are several types of CaMKs including CaMKI, CaMKII, and CaMKIV. CaMKI proteins are monomeric and they play pivotal roles in the nervous system, including long-term potentiation, dendritic arborization, neurite outgrowth, and the formation of spines, synapses, and axons. CaMKII is a signaling molecule that translates upstream calcium and reactive oxygen species (ROS) signals into downstream responses that play important roles in synaptic function and cardiovascular physiology. CAMKIV is implicated in regulating several transcription factors like CREB, MEF2, and retinoid orphan receptors, as well as in T-cell development and signaling. The CAMK family also consists of other related kinases including the Phosphorylase kinase Gamma subunit (PhKG), the C-terminal kinase domains of Ribosomal S6 kinase (RSK) and Mitogen and stress-activated kinase (MSK), Doublecortin-like kinase (DCKL), and the MAPK-activated protein kinases MK2, MK3, and MK5, among others. The CAMK family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.44769e-09
NC_014534.1\|WP_013334840.1\|113548_115042_+\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	7.81077e-28
NC_014534.1\|WP_049802793.1\|130686_131196_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	1.04306e-05
NC_014534.1\|WP_013334845.1\|117287_118811_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.12619e-56
NC_014534.1\|WP_013334850.1\|129338_129716_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|180986	PRK07459, PRK07459, single-stranded DNA-binding protein; Provisional.	1.51951e-42
NC_014534.1\|WP_049802790.1\|125861_126077_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	0.00163894

>NC_014534.1|WP_013334847.1|125039_125390_+|hypothetical-protein
MGKNPNMRLDDYDKQFYDEQGNLLPEWEFPFTLWDDSYSYYPDGTPRPEFKERVWKSDMSSAGVAYALSYREEEVQEWREKEELWQQQFGISRRERIRENYLKQQEEIRNSFKRRK
>NC_014534.1|WP_013334846.1|119036_125000_-|ribonuclease-H
MVLHIKHIDLISGEYLPNPFANQRQEQPYWIEKLSNSLLESFCPDISVSVGHLDEFYVQSSDPERIAQAEKILKNHPEGHKLILANGDRFFYAPAEYEPIINEILAGLDVKKPDLKNRGAYSSLLTSDQKSNQKRTATILIVDDETGENGGILDKRDAWKLTGDCHGKMSPQFASEVFKTNNRAIQFRIGLLEDKYIGKGTLTPRWLDGDEHELFRPLKFSNPANIPNIDLVLPLSSFKGTAKGNIKPGLITTEIVITEKDRSKAQKERGSLISASQPVQYYTEALKDTTPLLEQHLEKLQESIEDPRKLEQLYQKATLSGEAEESEVEENQFQDLISKLIENDKYGQLRETEFYKKKLEQFQAKQWKESAIGKFVKFNRAVVIPSKDLELGELYWNDYKPGESVLGFRSPMIGKNGLRVSTNKPVEEGLAPDGSPLEGVLVMNDFSWPRLHQQLTGQLSVALTTHPDKQPQLQQILEQLPTAKQLKDSSGKERVQLIDSINLSLETLIESGIPLTPLPYETDNEADGMDFDGDTYGFELIHNYPHLAQAARLHALNPDTPIKKEDKLSFDPSWSFERVALFMANSPVGVINNQVTTVQSFKNELDIYRDYAKPAQKREYAQKLANTANRLIATENREKNPRPIPPDYREQVYQIAQIATQPLDSGSAGQIFNLTEQIYDELLIEAQYNNQIAVDMFKSARPPSMARIQQDKGALYRKLETITDKKEQGLYTGDRILKATGVTPVELMAHVTNGAFRSESLESRPLNQFRDFFPNDYTEQQFLEVTEKKGEFDGLFNRATALRKEQENEPGPVLNFTTPKGNKVRITNLIAFNSISHFTPLQSQDITLSFVENDDKSTRASHQLAAQATLEGKTITLGTVKESDREKFNIQAGMTVPGTAKLGQALSDAEIDLLFKQAFDGAREWKELLPPEQIQQYFGATGHLACRELKNQANTTQHFLFAAFADELIDRSQTFQFKEFLVDKLKDYNEVPSQLFNEEVQLRVSPITIESKEGERIGRLWEVHNPEDDQWYSFGLSSVKGAQLPLNTTVTGQLSGENPATARLDIITPEIQQKLQPFFEGGGEIIFGQINKYAAAGEFFNGQTETFTLRRFTPETEYVVSVGDKTLGVVDRNLIAQIAQANSFKATLTTYGVDRGRYAIATLNNGEKLRINKIAFRGHDDFKGESLISEPVQLNIKATKAAEEVGVETIIDGFPQIIGVFGSHRDQNPGKQALTQAGLLKDGVTFEATITSRLTLGKLQINPDTIQYPPIGEWTKAAHLVPDEQKPKLNPEVAYFLNQVSTHPTLVSVSSEQWQLPNGKETTLPTFKITTDVRKAAAVEKYLADNKIPFAFKTSASEKQRSLISFAIVEGDLPRSIRSNLEDKFGTPLEEAAHQQRIGEISPFSRSVQQQFLERQELQAYLNLNPPEVPLRQLPILLSLTENAPVEILSPSTLPVQKDITNSPNAENRTSLPLISSDSKDPLLAALTNPTEAAHYKGNIKAHYPVSFRDNPTREAIGKDHPDYGYYKAEKYFSAKAAGVPFVSAEDGYKYYARSLDTHEQKEALMAEIIAAKLTQYPKLTLEIEKRGGVSYLEQCSHTTSANNSKWEGIGRDSAFIRALIKGYEEAILQKATFFDEQGQLKKPGLPGLLVPPGSSDAVERNRIKDRAMANLATQFIGIPANPDLPTSTKDYLAAWNLFDRGNTGKYTADDIVMVSGNLPRSTTKGTITPEQVQQTFDENYKPLLDRAISAGAQFVVGNAAGTDKLVQEYLNKKGYQLEQTEQGYLKSHLINQEISGQEPSISEVTLYIVTREEEIKEKNSKTIKSEQTTVEEITTVESEIEPSSTLIDPEFSPERLQIQQQRTQKVAPVLMALLEAKKLTRSPQLSYNPETNLTSLEGKDYDVTFDGKILNLLDKSGSLKMIASGVRNQDTGKVDWSSYPLPHGGEGLTESDEAKLTDPQFRQLVKEILLRAANNSTQKYHQNGHH
>NC_014534.1|WP_013334845.1|117287_118811_+|DEAD/DEAH-box-helicase
MQLRPYQTKVIEETHFKRKISQRILIIAGTGAGKTVIGSRLISDFVSLGQKVIFLVHRDILIKQTLKKLEGINLPYGIIAGSYPENLSQQVQIASIQTLSRRGKQWLQAEFPFTVAIFDESHLTNWFNFSLELCPKLPKKNNQTIIGLTATPWRRLKSQSMGDIYETSVLAPLPIELIEQGFLVPFSYYSIGKINKKGLVLHSSGEYTEASLKLKCNTHEMRSHIVSEWIAKAKGRKTIAFTIDIEHAQALAADFNAVGMRAAKVDGTMGIDDREKLYAQLDTGDLQVLCSCEALSEGFDVPIVSCVILARLTTSRAKYFQQIGRGARIVTDGRIKRDCLVLDPVGMVEGFGFLESLTKDDFNIEPSARRKEGGEAPVKQCPGCDRLILAAFPNCPECKFNFPPKHLAAPPQPLHLCIPPNRQEHYQYYQSLLRQAFNERASPSIADGKFKQKYGYPPPLSWRTGAIFGNNPTLENQKDYQKYLQEIATKNNFNQTWIEENLWELKH
>NC_014534.1|WP_013334844.1|116728_117298_+|hypothetical-protein
MIKKILLTTTVLLLSSCVDTKELASSPAKNNNQANFYSIRWKYCVSNEEIQKLGFYPFLREQPDNCWTARVALIVWGNDLPEVELWKLPSTGDSMLNPVKYDNYVLVFRGRGCPGYYPQPSRVGWYQGDTIVTFNRQYTNQIPQIKVTALDVQQVNLSKKDYEDRVWKDITPGIAKCEFIRENRNPNAT
>NC_014534.1|WP_013334843.1|115815_116637_+|hypothetical-protein
MSTMCLDLSMLKDLSLNDQAEVMRTQGEIYYSVKELSEKIDDKILTDYLKNLGEDTRIFRLFYLDGSVQSTIPKFYLDEKDVLHLYDAGPAPKAIKLPLKFVNHQTDYLSAETQNTETIIGRQTFYLEVEGSKAAFTAPVGIKTEYIKAANEKYKSGELIDSLLPKGNGVIPLKIVKYYPRPLKPKSQFEKGEEYQILELIGPDPRYNGTKRFLIQQLNNGEAIGEPVETLGNWSLEKHWNTFKDTPCRVVEKTIKDGNTIVKFALSSIARAS
>NC_014534.1|WP_013334842.1|115357_115819_+|hypothetical-protein
MKKLLICLFLLTGCSSSLTLRELNEKSVAQIAQENTNLSADALSNLKITYLWNDNREALHWVDFNNEQLCGIKYCLYALYAINEGQLQLLWRAYLDPLLPPKVNLIEPDKPCLKINQFNKKNPDVLDQYSLCPDLGKYQITDKQAIPLNRSQS
>NC_014534.1|WP_013334841.1|115019_115361_+|hypothetical-protein
MKLRFSVKNPFLPRFLATSTDREKQTEKILKFLENGENSVLNRNVFRRYSLEYNPNLSLTEQLNNLEAKKLQEIFIDLIHQPTVQLINWSWRIVLLILGYFFVSAFGLFRQPL
>NC_014534.1|WP_013334840.1|113548_115042_+|AAA-family-ATPase
MLKNFYAIKCPPIDRGILLKKFRSYWLWNPGTLSFKPSDPCQPELATPNWLYCLDYKNNIDENGFQRSETYIVEGILNPLSREDKYKLITAYEYLSRHKGKNLILLDSHIDLPADLHPLIEIKEVPLPQGDMLRKLLIQYGKDSLSYQTGCLGLSIGEIKTIVPLAKTPEDVLTYKAKKLKGRGLQLAPEPDVPDIAGLDLLKKDLETIAALFQPTAGQIGLRPPKGMMLWGLPGTGKSLTAKLAAKLTGALLIMCDWNQLLGDSDAESLDNLSYVLNLVDLLGPTILAIDEFEKAISGSLEGGVTTKMVGKLLNWLEDHTTPVILLVTINHLSLLPPEMFRRFEYIWFFDNDLSEKSLYEIFNLHFKKRFPSWLENIFTTEEWENILVNYASYTPAEIGKVVKLAQTKLYVAIERQTSSKAVELVNNYPLTYPQKFYQLILEVQKEIQASISVPFLNQQLEQIRMYQGFARPVSRISPSKNFFNKNGQNYETALFS
>NC_014534.1|WP_013334839.1|112798_113524_+|hypothetical-protein
MTATLTIEELTEEIKAYPEIQEIVDLALSDVDPKLAQQVFFYLIKTKVKPNDPLFVLMLTCRYYSLITLNAPNVIGNAFELGITKLLGALSEKLDRLQSISVTNVETQIALSVNKLLSRQDKATPRQKWIKRGKIAGLCMGLFSLGASLTYWWFEQSQLASLSANNRQLLAWAKSHEGQLARKIMQWNPSLIDGSCSDDVARLGIGWGEVLVKNGKIVGNKQATTGYCVVWRVPPNQRKFQ
>NC_014534.1|WP_157872025.1|111896_112802_+|hypothetical-protein
MPRKRKMEGETYNNSGNISQEEKIQNLVIIGGEKGGTGKSYVCKHLIAYLIRHSTEEDKWLNRITVYDADPSVDDVYQIYQNYPWMLKLEFTDNKYRISESLEILESNIKPLVIINLPSNVQKNFDNAFEQFGLFQEEIQHKFYETTYFFFISDGSFQSTKLFLEHLKRYQGKNFIKTVLILNEGQNGQSDSFKYLESVDSKQAKSFLEEINRNKIPVLTFPELSPALRYQLEDSLSQGESFDNLINGGDKLTVLKRSNLNQYIKKIDLVFNLIIGNPEWIKYTELTESLNYKDNQLPIQK
>NC_014534.1|WP_049802790.1|125861_126077_-|helix-turn-helix-domain-containing-protein
MLKADINSQTESLSDQAISQALDLSISTLERVRKRFVEDGIEAALARKEQVNRKAPRFNGEQEAHLIAERL
>NC_014534.1|WP_041934246.1|126409_126613_+|hypothetical-protein
MSNSIEGAIVGGKYDIQVKLGQGGSSVVYLAKKLGSNERYAIKTLSTDEDNAIKLLIRETENLKRHV
>NC_014534.1|WP_013334848.1|127974_128613_-|Uma2-family-endonuclease
MINPTLIATDIWIPAKWEDFLQIIEDPAYKKAKAYYYHHHMRLEMLPVGFDHSKDHSVIVFAINLFSVYAGIPLTLLDNCSYRKAGIKECQPDISGYVGDKAKIIPQGTNIVNLNQYPSPDLVVEVAKTSLLDDLGTKRSLYEALGIKEYWIVDVENTKIIAYQMQNKGSYQIVRSNVLSSLDIGILEDALRQSRQSDQSAVGKWLMTQFQP
>NC_014534.1|WP_013334849.1|128803_129265_-|hypothetical-protein
MNQTTLKIKIESVTPVEYSEDGGVKKVSGSCWFQFYDTNSKQTLQSSIEFDAYNGTGGAILNAGENAVWIAVGRLDIFKPSQTSPNHSLLLHIQQAFLVNAAPASIDAAPVAIPEVIVPVSKPKLELVGAGVGAGAHQNGKKPIDDNCDDIPF
>NC_014534.1|WP_013334850.1|129338_129716_-|single-stranded-DNA-binding-protein
MNNNINQISVTGRLGQDPEIRYFQSGSVLAKFNLADDRGEGKNAEANWFPCEVWGKAAEVAGDYCSKGSLVGVKGELTIESWTDNSTGEVRTKPVIKVKSLELLVTKNSTSQPALATGVVSKPNF
>NC_014534.1|WP_013334851.1|129786_130278_-|hypothetical-protein
MLLVIHNQLEIFERLWAMVDQRNYQPEIIDEEQLSLVAIIESNELSDGWTYTQNVDLEDNIPVILLTRSRSTDVGDIIQTKKGECYLVDSQNFTLLPQQPIYIHIGESVTLPNGEIVEKFPSLPIFNWSCLPLLQTINFSGSYYYLEIRGDKKQKYRLLRTYK
>NC_014534.1|WP_049802793.1|130686_131196_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MRDGINKAARLVINYCLDKGIGTIIFGWNKEQKQNCQLGNNTQAFVQIPIARLKNRIAQLCEQYALIFEEINEAYTSKSSYLDGDLIPLYGEKPDGYQFSGKRIKRGLYKSKNAILVNADIQAAANLLRRFQLKVNTISLEKVSRGSLMCLMKIKLFMPAKKKNLSFSA
>NC_014534.1|WP_013334852.1|131470_132310_+|RNA-directed-DNA-polymerase
MTNIIDEFLNLPNFNQAWFKVADNKGCAGIDGETIEKFALNLDNNLTFLLNSVANSNYIPQPLQQILIPKTQEKWRELRIPTVRDRIVQQALLNVLYPVMEKRFSDASFAYRPNRSYLDAVKRAAYWRDLGYQWVLDADIVEYFDNISHPILLKEVRKTIDNSGILCLIKAWISAVISTDKGIIFPEKGIPQGAVISPMLANIYLDEFDHHFTESDLKLVRYADDFLLLSKTEDAIMSGYAQVVQLLHLLGLELHQEKTQRERVTFAKVTRSHNTFLYK
>NC_014534.1|WP_013334853.1|132375_132741_-|hypothetical-protein
MISGYFGDEDGLFFEIELLAADGLELAVDAMFDTGFSGWLAINEQDLDALGWIYVDQQTMRTAQGDSQFDVFLGKMRINGNEFEVPVHVGQGLSEVLLGRQWLKTHRLVVDMSSSVLTLGN
>NC_014534.1|WP_013334854.1|132737_133055_-|hypothetical-protein
MTRDKSTPTVRRGRIFPEIQWTEPQKAQKRAEREEFYQRCQPIFARIQPELIKTHYNWYVAIEPDSGEYFLAQDDLVVAQIAHQKYPNAKLHVFRINETGVCGTL

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Crispr_ID: NC_014534_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_2

161319-161463

orTypeII

Consensus_repeat	Method
TACTGGGAATTAGAACAGTACGACCAATCACTGTCGGATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014534_2

>merge|NC_014534|2|161319-161463|CRISPRCasFinder
TACTGGGAATTAGAACAGTACGACCAATCACTGTCGGATTTGGCTAAAACTATTGAAATTAACCCTCAGTCAGTAAATGCCTACAACCAGCGAGGGCTTCTTTACTGGGAATTAGAACAGTACGACCAAGCACTGTCGGATTTGA

>NC_014534|2|2|161319-161463|CRISPRCasFinder
TACTGGGAATTAGAACAGTACGACCAATCACTGTCGGATTTG	GCTAAAACTATTGAAATTAACCCTCAGTCAGTAAATGCCTACAACCAGCGAGGGCTTCTT
TACTGGGAATTAGAACAGTACGACCAAGCACTGTCGGATTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334881.1\|158810_159488_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334879.1\|157449_158109_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163447
NC_014534.1\|WP_049802799.1\|155339_156416_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379519
NC_014534.1\|WP_157872029.1\|163134_164319_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334873.1\|149549_149744_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334888.1\|164839_165502_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|99751
NC_014534.1\|WP_013334890.1\|167392_168574_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_014534.1\|WP_013334893.1\|170610_171273_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_157872028.1\|162815_162974_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334874.1\|149795_150494_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334882.1\|159495_159906_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163450
NC_014534.1\|WP_013334878.1\|156638_157517_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|163448
NC_014534.1\|WP_013334887.1\|164601_164802_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334894.1\|171505_175648_-\|cadherin	unknown	unknown	gnl\|CDD\|206637
NC_014534.1\|WP_157872030.1\|171315_171462_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334880.1\|158112_158808_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373078
NC_014534.1\|WP_013334891.1\|169005_169362_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334875.1\|153853_154759_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_014534.1\|WP_013334883.1\|159917_160208_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334889.1\|165572_165989_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334879.1\|157449_158109_-\|hypothetical-protein	gnl\|CDD\|163447	TIGR03735, PRTRC_A, PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.	7.99389e-12
NC_014534.1\|WP_013334882.1\|159495_159906_-\|hypothetical-protein	gnl\|CDD\|163450	TIGR03738, PRTRC_C, PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.	0.00202212
NC_014534.1\|WP_013334878.1\|156638_157517_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	5.35825e-35
NC_014534.1\|WP_013334894.1\|171505_175648_-\|cadherin	gnl\|CDD\|206637	cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers.	6.17643e-16
NC_014534.1\|WP_013334880.1\|158112_158808_-\|hypothetical-protein	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	3.63745e-32
NC_014534.1\|WP_013334875.1\|153853_154759_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	3.58871e-50
NC_014534.1\|WP_013334888.1\|164839_165502_-\|J-domain-containing-protein	gnl\|CDD\|99751	cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.	6.06017e-06
NC_014534.1\|WP_049802799.1\|155339_156416_-\|HNH-endonuclease	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	1.34134e-15
NC_014534.1\|WP_013334890.1\|167392_168574_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	5.10293e-44

>NC_014534.1|WP_013334883.1|159917_160208_-|hypothetical-protein
MTIIVTLLIMEESAEQILATVGFSDGSAIEVKYILTSELELGLTLKEMIAKVIQKKEHFEVAKTQKASQKSEDKTQKNSKANLTQDVTNSTQLNLF
>NC_014534.1|WP_013334882.1|159495_159906_-|hypothetical-protein
MQIDIHGQTINLPDELTDEQIRAAFAPYYPEIATAELKRDGQTVKVIKRAGTKGSNLSVAKALFTASPYINPALLLSLKIRNAEMAGLLSLETLLALQDEINLAISDSREAEEMMRRMKNNLISSRPISDNFSNFI
>NC_014534.1|WP_013334881.1|158810_159488_-|hypothetical-protein
MDVTLSRYVLPRSVKEATIYLENFAGTIQLLALFREFFPIDWQAATASFNKINFGHEQCWELAEKFLELVERELFPINYNRFDYEREEVVDAIPFFPQDFDYFDDIEDFVGGSRFLLELYTRNFENSSQIDWDKLQALCEATPDPLSYLYDAMSVIDHSTGTYWLDCHREWIEIFPWTSEAIILLRDQWKEAQQFIFKFNSLINWLEENPSHQTEIITFWNQARI
>NC_014534.1|WP_013334880.1|158112_158808_-|hypothetical-protein
MLPDFDPESIAHSFPFQAKDWLCSVHIFEGQFAVTYQEDKRTIRKFISPLSVRQALEKIPIDTGFIPPGIVRWGMFNGDQWAVKFIPPQKYTLNFGLVEGKELSLSVPLPAFVFLGKGTTYYLWAVKEKTVLPTAIVFHAPLPNIYDNGAICFGNVSVLRASLQVMDEVWSRFLGSVFNQDFSTNKSKKYPDNVIEQLKMVAGKTTKKYPNNDLVPMAKSLTVAQIIEQFV
>NC_014534.1|WP_013334879.1|157449_158109_-|hypothetical-protein
MDIKLIDHHMAKGSIYPFNTNHLYDYILANNGLFIRAENRAFSIVSLLKTCDVVGLVEIQESFKFKLPPVPMAISNTIFQKAKLSLPDELLLHLNYNKNTWNLTEPLQQQSPTSIKWKSADFDEFDFDIELHSHGHLIAYFSATDNKDETGLAIYAVIGQLEEMPQISVRVGIYGQHFAYIPADPVFELEEGIKDKFYDTTSYFIRSNNSAYSYPHREL
>NC_014534.1|WP_013334878.1|156638_157517_-|ThiF-family-adenylyltransferase
MIQQAILSDLIIRPIPILIGSFNFLDIYLVGCGGTGSFLAPSLVRLVLELQQGGCDVRLTFVDHDHVSDRNIPRQNFCPGDLGGYKAALLASRYGIAFGVEIAAIVEPFNYQLVDRPRWHSQTILIGCVDNSPARSELSTVLSSLAQYNRQIWYLDCGNHGEGIAAGQVLLGSTNNFDLQAAFNDLENPSFCVSLPAPGLQHPELLENHPEDGMDEHLSCTQIAERNKQALFINQRVAVEAVEMINRLINQRSLNRFATYFNCEWGSARSEYITVANLKKFSAFSDLQLKSN
>NC_014534.1|WP_049802799.1|155339_156416_-|HNH-endonuclease
MGWLAPSIGHKLDSHHRLINLIKSVLPIEEVIIEVANFDIKKIKNPSIEGEDYQQGEQYGFDNLRKYILHRDNHRCQNPNCKNKSKQPILQVHHLGFWKDDRTDRPSNLITLCSKCHTPANHKKGKFLYRWQPRLKSFRGETFMSTVRWRLTEFPTLTKSIIYAVCSWLYLQGLYKTGRILAALVKDYSHTYGYITKAKRRELNLEKSHQNDAFVIAGGTTQTRCNPLNLEQIRHHKRSLEQFYDAKYIDTRDGQVKSGSILFSGRRTRNKNHNGENLRKYRGQKVSKGRRAIKKLRYPYKQHDLVKYQGRIIPVVGMQNKGTRLSLKPYAGCPTKYLTAPVNQVIPIYKREGICEII
>NC_014534.1|WP_013334875.1|153853_154759_+|ParB/RepB/Spo0J-family-partition-protein
MNLQLNNVALFLNHSPEVEETSVQPVSLPIDAIQTRPSQPRRYFSPQAHQELVDSIRQHGILQPILVRPLDGGTYELVAGERRYRAAIDAGLTNIPVLIKQLSDGEASELTLIENLQRENLNPLEEAEGILELLSIALEKPISDVPKILYRMQNEAVGKVTQNVLSSEEANKIKEVFRRVGTISWESFIPSRLSLLSLPNDILAALREGKIEYTKAVALAKIKDDNSRRDFLLRAIEEKWTLSQIKEKIKSLSTKEEETINPQQRIKSFAAKLKKSKSLADQKVWKKIEGYLSKIESLIED
>NC_014534.1|WP_013334874.1|149795_150494_-|hypothetical-protein
MVEPDLKARIAWELRLLTPDNFLEQLKAQFQNPNYQQKFKSSVKQSKSLENQDYSDEEFERLWEEVWQANIKDAKRFNSFQGFKIDDRLVQTLEDTQLRKGKIIDFDLAAEASKPLVVQWQDSTVVHYNLYDLISQGISRWAQVDLSAQVVYQMSESKKFFRVFIGFKSQKAAKTWLPELKSKLGRLSHLVELPETEKPTPHKYHYQVEKFKYKTEKKILEVLNEIAQQKLI
>NC_014534.1|WP_013334873.1|149549_149744_-|hypothetical-protein
MINLELTKEQIGLILYFIDEYQGKIALNIDNRLTNILGEPVKIDDLPQEIQNLADYLYNEIISN
>NC_014534.1|WP_157872028.1|162815_162974_-|hypothetical-protein
MPLLLMLHGADANAQGALNILKRSQLTSDAIILAIDSRFRTWDIILPISRCS
>NC_014534.1|WP_157872029.1|163134_164319_-|hypothetical-protein
MMSAVSSLATEPTTDSSQATSIQYSAFGYVLGHLELNAENTKIGKLLLTDGTILPVYLFHQSKLEQISLEKLYAWRIYFRTDREQNLSGLKLVEAIEVKDSSKLEKLLPSYAALDHFRIRARIHNVWKGQISLRLERNNVPPGKEYLPQWKPFYITVLGKLEPRVNKGEAIEITARRFGMQLHLVEANPIDETVVESKTDKKRKKSQSNPEKGSKMEFNPEINQSTEFIAEEAQEIEINSSTVASSAVTSTTATETTQASTQVTATDSTSVITSTTTAETNSETGVIMINGKTPEVTIKFSERPDVPETGKKVTLQVTGDNGIVVRADMNRKTLQKNVEKMDSYEDWIAAMSGKIVKIGPDGTIELEGAGINVFERKMKNKEEESDGSAPQAQV
>NC_014534.1|WP_013334887.1|164601_164802_-|hypothetical-protein
MPSKKVFVKEYTIRAHYRTIHTRVFHLICSHCHDAVKRETYANSCPKYGNQCNGVAAKCKRCENKS
>NC_014534.1|WP_013334888.1|164839_165502_-|J-domain-containing-protein
MYTTEQILEIAQLPETCFRYRCHIENLIDFYKWAKQQWTASALKEFTTEHNLNLRRQGDRARLGWLMAIEYVKCLPPAQPEPSAPLSNSQQLQQSSSLVEHSLKETQVVKVLATAIAYLPPVPPTNGLEKTAPYSILGQPIYFDELVRNYKILAQKWHPDLCNHPEAKDRFQLVTAIFQELKANWFKKYSPLIAACAIGPENLKRAKSKKFSFTPESFWA
>NC_014534.1|WP_013334889.1|165572_165989_-|hypothetical-protein
MSNSEYQIAKGLQTGDNINQALAELTVAKSASMLKNALKSDFNTVLEARLTEAVSAVLVEHAETSQQFAQHFLMQTKTKLAGHLVDSQHHHPIVSIPESMSLSQLESFDVDLDAEVARIADEAGTLTIDVNPDSFIGF
>NC_014534.1|WP_013334890.1|167392_168574_+|ISAs1-family-transposase
MKLKPKTTIEDFFGKIEDPRIERTKKHKLIDIITITICAVICGADSWIDIELFGKCKYKWLKKFLELPNGIPSHDTFARVFSLLEPEKLQQSFLKWIESISSLTQGEIVAIDGKTIRHSYDKSKDKSAVQMVSAWATTNGLVLGQSIVDEKSNEITAIPDGQLTVRRATAHPCPQLLKVLSLSGCIVTIDAIGCQKEIVKQITEQDADYVITLKKNQVNLYEKVEALFKKALINNFEGFIKSEYKVKDEGHGRQEVRYYQMLSNVAEEIDPDWQWLNLNSIGYVDYLRVENGTDKTSLDRRYFISSLNNNIKLFSKAIREHWCIENQCHWVLDVQFCEDDSRIRKDNAPANIAILRHLGLNLLKQEKTQKVGVKAKRKKAGWDENYLLKVLSG
>NC_014534.1|WP_013334891.1|169005_169362_-|hypothetical-protein
MERQALYEKYKTLNWEQQLGNLALTLSNISKQCLISRQDKLTSMLLREAALMIEWSAPNVPSQYHYSLAAIQKECLKWQRNFPIEEAREILSFNRSHHSETVLMMTNLLDEFEMISIA
>NC_014534.1|WP_013334893.1|170610_171273_-|hypothetical-protein
MTILTSQFNLRTDNNGLAGVILNSPLNTGDTFFVEVLMGDIRSNAVGITSSNINLSFAPNQLQNINSPFDTVSLSSPLLPSTFLLGRTGNLDNNIGLITNLGAGSIPSFGIGSPMGINQLDTFSLFHFQVIEMNNSILTLNIDLSQTGFADGTFANQSPNQNQFAQTIMINHSQPITESSPILAIFLVGTLLLLNKFLITELFPNRIDRNKGKANKFFKN
>NC_014534.1|WP_157872030.1|171315_171462_-|hypothetical-protein
MATVEDGEIIVICTVFTGFTASKYSENTLITPFLTVAINLKNDIYLVF
>NC_014534.1|WP_013334894.1|171505_175648_-|cadherin
MATITGTTGNDNLAGTDSGDNINGGSGNDTISGNAGGDEIYGEDGDDVLNGGNDGDALLGGIGNDILNGDAGNDNLFSDAGNDTINGGSGTDNYNADYSNASSGLIMTYDSATGNGTIVVGSEIDTFTSIELFNYFQGTNFNDVIFGGSANDFRINGGSGNDTISGNAGGDEIYGDDGDDVLNGGNDGDALRGGIGNDILNGDAGNDGLFSDAGNDTINGGSGTDNYNADYSNASSGLIMTYDSATGNGTIVVGSETDTFTSIELFNYFQGTNFNDVIFGGSANDFRINGGSGNDTISGNAGGDEIYGDDGDDVLNGGNDGDALRGGIGNDILNGDAGNDGLFSDAGNDTINGGSGTDNYNADYSNASSGLIMTYDSATGNGTIVVGSETDTFTSIELFNYFQGTNFNDVIFGGSANDFRINGGSGNDTISGNAGGDEIYGEDGNDVLNGGNDGDALFGGIGNDILNGDAGNDYLSGGNGNDTLQGTNNGVGERDPLEGGTESDRFILGDTTKIFYDDGNSTLAGSNDYAQINDFNPTEDIIQLNGSSNNYLLTVSGSNTNLYINKPGTEPDELIAIIQNQTGLSLTNPYFSYVSSNSAPVLNDTTLTVPENSPLNTLVGTITATDADNNPLTYSITAGNPNLDGDATPAFTINNNGQIRVADPDDIDFERNPNNPLTVTVSDGSLTDTATITVNLTDVIETPNRPPVANDATFTLVKTSPINTAVGTVTATDPDNNPLTYSITAGNLDSDGDNIKAFSISNAGVITITDPDDISSQTNPFNLTVTVSDGNLTDTAAITVNLTSPVNRAPVVNDGVFSISKNTANGTVVGTINATDPDNNPLTYSIIAGNPDTDGDNIKAFAISNTGVITVTDKDDILAQTNPFNLTVQGSDGNLTDTGIATINLNNVNPLSFQLKLYEDNNGAVGSEITGNTAIKGNKFFAEILVGDTRTNAAGLVINALNFNFAPDVAQNLNNFSDISNVNNPLVTSNFPLFRGGTLDNTNGTITNLSGGSLPQGNQGSAIGINQLSRFGLLQFDVVGTRDNSNLTLTFDASQIGFADGTFADPNDTLTLTRNIIINDAPIVNQINNVNLAERSAAGTVVVADNLVEATDDNLTGQAVTFSLSTSPKDASGNGLFAINATTGEITLTQAGFNTIDYESGVTSYQLGVKATDGFKLSTERLFSVNITNVNEAGISVDKTAITFGTRLSQYRQGATDSLFVRPNFADKTQFIEITNTAVGTNDILAISSITINAQNVTTNANFSNGDLLLNPGETRRIALNYAPKAAREDFNLLNGLVINSNAQNSPAFNIQLAGKSTFNSDISYDGKVNLTDLNTLQRPGLFGSSSGQNNYDPTADITGDGRINLAELVSLNAEFGLVV

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Crispr_ID: NC_014534_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_3

161625-161870

orTypeII

Consensus_repeat	Method
TACTGGGAATTAGAACAGTACGACCAATCACTGTCGGATTTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_014534_3

>merge|NC_014534|3|161625-161870|CRISPRCasFinder
TACTCAAAATTAGAAGAGTACGATAAAGCTATATCTGATTATAGCAAAGTCATTGACCTTGATCCTCAGTGTACAGAGGCTTATGAAAAGCGAGGCTTACTCTACTATAAATTACAACAGTACGACAAAGTTCTGTCTGATTACAGCAAAGCTATTGAACTTAATCCCCAAGATGATGCAGAATATATAGCAAGAGGCTCATTCTACTTTGAATTAAAAGAGTATGATAAAGCACTGCTGGATTAT

>NC_014534|3|3|161625-161870|CRISPRCasFinder
TACTCAAAATTAGAAGAGTACGATAAAGCTATATCTGATTAT	AGCAAAGTCATTGACCTTGATCCTCAGTGTACAGAGGCTTATGAAAAGCGAGGCTTACTC
TACTATAAATTACAACAGTACGACAAAGTTCTGTCTGATTAC	AGCAAAGCTATTGAACTTAATCCCCAAGATGATGCAGAATATATAGCAAGAGGCTCATTC
TACTTTGAATTAAAAGAGTATGATAAAGCACTGCTGGATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334881.1\|158810_159488_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334879.1\|157449_158109_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163447
NC_014534.1\|WP_049802799.1\|155339_156416_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379519
NC_014534.1\|WP_157872029.1\|163134_164319_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334873.1\|149549_149744_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334888.1\|164839_165502_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|99751
NC_014534.1\|WP_013334890.1\|167392_168574_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_014534.1\|WP_013334893.1\|170610_171273_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_157872028.1\|162815_162974_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334874.1\|149795_150494_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334882.1\|159495_159906_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163450
NC_014534.1\|WP_013334878.1\|156638_157517_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|163448
NC_014534.1\|WP_013334887.1\|164601_164802_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334894.1\|171505_175648_-\|cadherin	unknown	unknown	gnl\|CDD\|206637
NC_014534.1\|WP_157872030.1\|171315_171462_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334880.1\|158112_158808_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373078
NC_014534.1\|WP_013334891.1\|169005_169362_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334875.1\|153853_154759_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_014534.1\|WP_013334883.1\|159917_160208_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334889.1\|165572_165989_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334879.1\|157449_158109_-\|hypothetical-protein	gnl\|CDD\|163447	TIGR03735, PRTRC_A, PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.	7.99389e-12
NC_014534.1\|WP_013334882.1\|159495_159906_-\|hypothetical-protein	gnl\|CDD\|163450	TIGR03738, PRTRC_C, PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.	0.00202212
NC_014534.1\|WP_013334878.1\|156638_157517_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	5.35825e-35
NC_014534.1\|WP_013334894.1\|171505_175648_-\|cadherin	gnl\|CDD\|206637	cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers.	6.17643e-16
NC_014534.1\|WP_013334880.1\|158112_158808_-\|hypothetical-protein	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	3.63745e-32
NC_014534.1\|WP_013334875.1\|153853_154759_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	3.58871e-50
NC_014534.1\|WP_013334888.1\|164839_165502_-\|J-domain-containing-protein	gnl\|CDD\|99751	cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.	6.06017e-06
NC_014534.1\|WP_049802799.1\|155339_156416_-\|HNH-endonuclease	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	1.34134e-15
NC_014534.1\|WP_013334890.1\|167392_168574_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	5.10293e-44

>NC_014534.1|WP_013334883.1|159917_160208_-|hypothetical-protein
MTIIVTLLIMEESAEQILATVGFSDGSAIEVKYILTSELELGLTLKEMIAKVIQKKEHFEVAKTQKASQKSEDKTQKNSKANLTQDVTNSTQLNLF
>NC_014534.1|WP_013334882.1|159495_159906_-|hypothetical-protein
MQIDIHGQTINLPDELTDEQIRAAFAPYYPEIATAELKRDGQTVKVIKRAGTKGSNLSVAKALFTASPYINPALLLSLKIRNAEMAGLLSLETLLALQDEINLAISDSREAEEMMRRMKNNLISSRPISDNFSNFI
>NC_014534.1|WP_013334881.1|158810_159488_-|hypothetical-protein
MDVTLSRYVLPRSVKEATIYLENFAGTIQLLALFREFFPIDWQAATASFNKINFGHEQCWELAEKFLELVERELFPINYNRFDYEREEVVDAIPFFPQDFDYFDDIEDFVGGSRFLLELYTRNFENSSQIDWDKLQALCEATPDPLSYLYDAMSVIDHSTGTYWLDCHREWIEIFPWTSEAIILLRDQWKEAQQFIFKFNSLINWLEENPSHQTEIITFWNQARI
>NC_014534.1|WP_013334880.1|158112_158808_-|hypothetical-protein
MLPDFDPESIAHSFPFQAKDWLCSVHIFEGQFAVTYQEDKRTIRKFISPLSVRQALEKIPIDTGFIPPGIVRWGMFNGDQWAVKFIPPQKYTLNFGLVEGKELSLSVPLPAFVFLGKGTTYYLWAVKEKTVLPTAIVFHAPLPNIYDNGAICFGNVSVLRASLQVMDEVWSRFLGSVFNQDFSTNKSKKYPDNVIEQLKMVAGKTTKKYPNNDLVPMAKSLTVAQIIEQFV
>NC_014534.1|WP_013334879.1|157449_158109_-|hypothetical-protein
MDIKLIDHHMAKGSIYPFNTNHLYDYILANNGLFIRAENRAFSIVSLLKTCDVVGLVEIQESFKFKLPPVPMAISNTIFQKAKLSLPDELLLHLNYNKNTWNLTEPLQQQSPTSIKWKSADFDEFDFDIELHSHGHLIAYFSATDNKDETGLAIYAVIGQLEEMPQISVRVGIYGQHFAYIPADPVFELEEGIKDKFYDTTSYFIRSNNSAYSYPHREL
>NC_014534.1|WP_013334878.1|156638_157517_-|ThiF-family-adenylyltransferase
MIQQAILSDLIIRPIPILIGSFNFLDIYLVGCGGTGSFLAPSLVRLVLELQQGGCDVRLTFVDHDHVSDRNIPRQNFCPGDLGGYKAALLASRYGIAFGVEIAAIVEPFNYQLVDRPRWHSQTILIGCVDNSPARSELSTVLSSLAQYNRQIWYLDCGNHGEGIAAGQVLLGSTNNFDLQAAFNDLENPSFCVSLPAPGLQHPELLENHPEDGMDEHLSCTQIAERNKQALFINQRVAVEAVEMINRLINQRSLNRFATYFNCEWGSARSEYITVANLKKFSAFSDLQLKSN
>NC_014534.1|WP_049802799.1|155339_156416_-|HNH-endonuclease
MGWLAPSIGHKLDSHHRLINLIKSVLPIEEVIIEVANFDIKKIKNPSIEGEDYQQGEQYGFDNLRKYILHRDNHRCQNPNCKNKSKQPILQVHHLGFWKDDRTDRPSNLITLCSKCHTPANHKKGKFLYRWQPRLKSFRGETFMSTVRWRLTEFPTLTKSIIYAVCSWLYLQGLYKTGRILAALVKDYSHTYGYITKAKRRELNLEKSHQNDAFVIAGGTTQTRCNPLNLEQIRHHKRSLEQFYDAKYIDTRDGQVKSGSILFSGRRTRNKNHNGENLRKYRGQKVSKGRRAIKKLRYPYKQHDLVKYQGRIIPVVGMQNKGTRLSLKPYAGCPTKYLTAPVNQVIPIYKREGICEII
>NC_014534.1|WP_013334875.1|153853_154759_+|ParB/RepB/Spo0J-family-partition-protein
MNLQLNNVALFLNHSPEVEETSVQPVSLPIDAIQTRPSQPRRYFSPQAHQELVDSIRQHGILQPILVRPLDGGTYELVAGERRYRAAIDAGLTNIPVLIKQLSDGEASELTLIENLQRENLNPLEEAEGILELLSIALEKPISDVPKILYRMQNEAVGKVTQNVLSSEEANKIKEVFRRVGTISWESFIPSRLSLLSLPNDILAALREGKIEYTKAVALAKIKDDNSRRDFLLRAIEEKWTLSQIKEKIKSLSTKEEETINPQQRIKSFAAKLKKSKSLADQKVWKKIEGYLSKIESLIED
>NC_014534.1|WP_013334874.1|149795_150494_-|hypothetical-protein
MVEPDLKARIAWELRLLTPDNFLEQLKAQFQNPNYQQKFKSSVKQSKSLENQDYSDEEFERLWEEVWQANIKDAKRFNSFQGFKIDDRLVQTLEDTQLRKGKIIDFDLAAEASKPLVVQWQDSTVVHYNLYDLISQGISRWAQVDLSAQVVYQMSESKKFFRVFIGFKSQKAAKTWLPELKSKLGRLSHLVELPETEKPTPHKYHYQVEKFKYKTEKKILEVLNEIAQQKLI
>NC_014534.1|WP_013334873.1|149549_149744_-|hypothetical-protein
MINLELTKEQIGLILYFIDEYQGKIALNIDNRLTNILGEPVKIDDLPQEIQNLADYLYNEIISN
>NC_014534.1|WP_157872028.1|162815_162974_-|hypothetical-protein
MPLLLMLHGADANAQGALNILKRSQLTSDAIILAIDSRFRTWDIILPISRCS
>NC_014534.1|WP_157872029.1|163134_164319_-|hypothetical-protein
MMSAVSSLATEPTTDSSQATSIQYSAFGYVLGHLELNAENTKIGKLLLTDGTILPVYLFHQSKLEQISLEKLYAWRIYFRTDREQNLSGLKLVEAIEVKDSSKLEKLLPSYAALDHFRIRARIHNVWKGQISLRLERNNVPPGKEYLPQWKPFYITVLGKLEPRVNKGEAIEITARRFGMQLHLVEANPIDETVVESKTDKKRKKSQSNPEKGSKMEFNPEINQSTEFIAEEAQEIEINSSTVASSAVTSTTATETTQASTQVTATDSTSVITSTTTAETNSETGVIMINGKTPEVTIKFSERPDVPETGKKVTLQVTGDNGIVVRADMNRKTLQKNVEKMDSYEDWIAAMSGKIVKIGPDGTIELEGAGINVFERKMKNKEEESDGSAPQAQV
>NC_014534.1|WP_013334887.1|164601_164802_-|hypothetical-protein
MPSKKVFVKEYTIRAHYRTIHTRVFHLICSHCHDAVKRETYANSCPKYGNQCNGVAAKCKRCENKS
>NC_014534.1|WP_013334888.1|164839_165502_-|J-domain-containing-protein
MYTTEQILEIAQLPETCFRYRCHIENLIDFYKWAKQQWTASALKEFTTEHNLNLRRQGDRARLGWLMAIEYVKCLPPAQPEPSAPLSNSQQLQQSSSLVEHSLKETQVVKVLATAIAYLPPVPPTNGLEKTAPYSILGQPIYFDELVRNYKILAQKWHPDLCNHPEAKDRFQLVTAIFQELKANWFKKYSPLIAACAIGPENLKRAKSKKFSFTPESFWA
>NC_014534.1|WP_013334889.1|165572_165989_-|hypothetical-protein
MSNSEYQIAKGLQTGDNINQALAELTVAKSASMLKNALKSDFNTVLEARLTEAVSAVLVEHAETSQQFAQHFLMQTKTKLAGHLVDSQHHHPIVSIPESMSLSQLESFDVDLDAEVARIADEAGTLTIDVNPDSFIGF
>NC_014534.1|WP_013334890.1|167392_168574_+|ISAs1-family-transposase
MKLKPKTTIEDFFGKIEDPRIERTKKHKLIDIITITICAVICGADSWIDIELFGKCKYKWLKKFLELPNGIPSHDTFARVFSLLEPEKLQQSFLKWIESISSLTQGEIVAIDGKTIRHSYDKSKDKSAVQMVSAWATTNGLVLGQSIVDEKSNEITAIPDGQLTVRRATAHPCPQLLKVLSLSGCIVTIDAIGCQKEIVKQITEQDADYVITLKKNQVNLYEKVEALFKKALINNFEGFIKSEYKVKDEGHGRQEVRYYQMLSNVAEEIDPDWQWLNLNSIGYVDYLRVENGTDKTSLDRRYFISSLNNNIKLFSKAIREHWCIENQCHWVLDVQFCEDDSRIRKDNAPANIAILRHLGLNLLKQEKTQKVGVKAKRKKAGWDENYLLKVLSG
>NC_014534.1|WP_013334891.1|169005_169362_-|hypothetical-protein
MERQALYEKYKTLNWEQQLGNLALTLSNISKQCLISRQDKLTSMLLREAALMIEWSAPNVPSQYHYSLAAIQKECLKWQRNFPIEEAREILSFNRSHHSETVLMMTNLLDEFEMISIA
>NC_014534.1|WP_013334893.1|170610_171273_-|hypothetical-protein
MTILTSQFNLRTDNNGLAGVILNSPLNTGDTFFVEVLMGDIRSNAVGITSSNINLSFAPNQLQNINSPFDTVSLSSPLLPSTFLLGRTGNLDNNIGLITNLGAGSIPSFGIGSPMGINQLDTFSLFHFQVIEMNNSILTLNIDLSQTGFADGTFANQSPNQNQFAQTIMINHSQPITESSPILAIFLVGTLLLLNKFLITELFPNRIDRNKGKANKFFKN
>NC_014534.1|WP_157872030.1|171315_171462_-|hypothetical-protein
MATVEDGEIIVICTVFTGFTASKYSENTLITPFLTVAINLKNDIYLVF
>NC_014534.1|WP_013334894.1|171505_175648_-|cadherin
MATITGTTGNDNLAGTDSGDNINGGSGNDTISGNAGGDEIYGEDGDDVLNGGNDGDALLGGIGNDILNGDAGNDNLFSDAGNDTINGGSGTDNYNADYSNASSGLIMTYDSATGNGTIVVGSEIDTFTSIELFNYFQGTNFNDVIFGGSANDFRINGGSGNDTISGNAGGDEIYGDDGDDVLNGGNDGDALRGGIGNDILNGDAGNDGLFSDAGNDTINGGSGTDNYNADYSNASSGLIMTYDSATGNGTIVVGSETDTFTSIELFNYFQGTNFNDVIFGGSANDFRINGGSGNDTISGNAGGDEIYGDDGDDVLNGGNDGDALRGGIGNDILNGDAGNDGLFSDAGNDTINGGSGTDNYNADYSNASSGLIMTYDSATGNGTIVVGSETDTFTSIELFNYFQGTNFNDVIFGGSANDFRINGGSGNDTISGNAGGDEIYGEDGNDVLNGGNDGDALFGGIGNDILNGDAGNDYLSGGNGNDTLQGTNNGVGERDPLEGGTESDRFILGDTTKIFYDDGNSTLAGSNDYAQINDFNPTEDIIQLNGSSNNYLLTVSGSNTNLYINKPGTEPDELIAIIQNQTGLSLTNPYFSYVSSNSAPVLNDTTLTVPENSPLNTLVGTITATDADNNPLTYSITAGNPNLDGDATPAFTINNNGQIRVADPDDIDFERNPNNPLTVTVSDGSLTDTATITVNLTDVIETPNRPPVANDATFTLVKTSPINTAVGTVTATDPDNNPLTYSITAGNLDSDGDNIKAFSISNAGVITITDPDDISSQTNPFNLTVTVSDGNLTDTAAITVNLTSPVNRAPVVNDGVFSISKNTANGTVVGTINATDPDNNPLTYSIIAGNPDTDGDNIKAFAISNTGVITVTDKDDILAQTNPFNLTVQGSDGNLTDTGIATINLNNVNPLSFQLKLYEDNNGAVGSEITGNTAIKGNKFFAEILVGDTRTNAAGLVINALNFNFAPDVAQNLNNFSDISNVNNPLVTSNFPLFRGGTLDNTNGTITNLSGGSLPQGNQGSAIGINQLSRFGLLQFDVVGTRDNSNLTLTFDASQIGFADGTFADPNDTLTLTRNIIINDAPIVNQINNVNLAERSAAGTVVVADNLVEATDDNLTGQAVTFSLSTSPKDASGNGLFAINATTGEITLTQAGFNTIDYESGVTSYQLGVKATDGFKLSTERLFSVNITNVNEAGISVDKTAITFGTRLSQYRQGATDSLFVRPNFADKTQFIEITNTAVGTNDILAISSITINAQNVTTNANFSNGDLLLNPGETRRIALNYAPKAAREDFNLLNGLVINSNAQNSPAFNIQLAGKSTFNSDISYDGKVNLTDLNTLQRPGLFGSSSGQNNYDPTADITGDGRINLAELVSLNAEFGLVV

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Crispr_ID: NC_014534_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_4

236763-237089

TypeIII

Consensus_repeat	Method
GTTTCCATTCTGTTAGTTTTCTCCTAAGA-GAAAAG	PILER-CR
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	CRISPRCasFinder
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	CRT

4 spacers

cas1,cas2,cas10,cmr3gr5,cmr4gr7

The CRISPR arrays of NC_014534_4

>merge|NC_014534|4|236763-237089|PILER-CR,CRISPRCasFinder,CRT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAACACTGTTTTTACGTGGCGCTCAGAGTACGCAGATCTTTTCTCTTAGGAGAAAACTAACAGAATGGAAACTTGCCATTCCTGGCAGTGTGTGAACATATTCCTGCAAACTTTTCTCTTAGGAGAAAACTAACAGAATGGAAACAGCATTAAGTGCCTCTATTTGAGAGGCTTCTAGAAACACTTTTCTCTTAGGAGAAAACTAACAGAATGGAAACTGTGCAGACTGCATAGCCACATATAACACCCTATTATTTAATTCTTTTCTCTTAGGAGAAAACTAACAGAATGGAGAG

>NC_014534|4|1|236763-237011|PILER-CR
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	ACTGTTTTTACGTGGCGCTCAGAGTACGCAGAT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	TTGCCATTCCTGGCAGTGTGTGAACATATTCCTGCAAA
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	AGCATTAAGTGCCTCTATTTGAGAGGCTTCTAGAAACA
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC

>NC_014534|4|4|236763-237089|CRISPRCasFinder
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	ACTGTTTTTACGTGGCGCTCAGAGTACGCAGAT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	TTGCCATTCCTGGCAGTGTGTGAACATATTCCTGCAAA
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	AGCATTAAGTGCCTCTATTTGAGAGGCTTCTAGAAACA
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	TGTGCAGACTGCATAGCCACATATAACACCCTATTATTTAATT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAGAG

>NC_014534|4|1|236763-237089|CRT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	ACTGTTTTTACGTGGCGCTCAGAGTACGCAGAT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	TTGCCATTCCTGGCAGTGTGTGAACATATTCCTGCAAA
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	AGCATTAAGTGCCTCTATTTGAGAGGCTTCTAGAAACA
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAAAC	TGTGCAGACTGCATAGCCACATATAACACCCTATTATTTAATT
CTTTTCTCTTAGGAGAAAACTAACAGAATGGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334934.1\|222728_224771_+\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_014534.1\|WP_013334946.1\|241082_241592_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334941.1\|237313_239329_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_014534.1\|WP_013334755.1\|226733_226976_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334942.1\|239354_239645_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014534.1\|WP_013334943.1\|239672_239981_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334948.1\|243524_246425_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_014534.1\|WP_049802803.1\|240080_240617_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334947.1\|242583_243426_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_014534.1\|WP_013334945.1\|240609_240906_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334931.1\|220891_221926_+\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_014534.1\|WP_013334949.1\|246417_247581_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_014534.1\|WP_083786955.1\|234921_236499_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|380042
NC_014534.1\|WP_157871992.1\|226303_226537_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188
NC_014534.1\|WP_013334936.1\|226972_227296_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334939.1\|233414_234902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
NC_014534.1\|WP_013334950.1\|247592_248618_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|274210
NC_014534.1\|WP_013334935.1\|225096_225867_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226091
NC_014534.1\|WP_041934256.1\|222157_222760_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334937.1\|228107_228383_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334934.1\|222728_224771_+\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	1.05522e-78
NC_014534.1\|WP_013334947.1\|242583_243426_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	6.5061e-08
NC_014534.1\|WP_013334941.1\|237313_239329_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.80297e-117
NC_014534.1\|WP_013334942.1\|239354_239645_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.45301e-25
NC_014534.1\|WP_013334949.1\|246417_247581_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.25295e-57
NC_014534.1\|WP_013334948.1\|243524_246425_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	1.19277e-38
NC_014534.1\|WP_013334931.1\|220891_221926_+\|IS701-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.49521e-08
NC_014534.1\|WP_083786955.1\|234921_236499_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	9.61798e-08
NC_014534.1\|WP_157871992.1\|226303_226537_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	3.86258e-07
NC_014534.1\|WP_013334939.1\|233414_234902_+\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00559852
NC_014534.1\|WP_013334935.1\|225096_225867_-\|hypothetical-protein	gnl\|CDD\|226091	COG3561, COG3561, Phage anti-repressor protein [Transcription].	0.000369641
NC_014534.1\|WP_013334950.1\|247592_248618_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	4.42107e-24

>NC_014534.1|WP_083786955.1|234921_236499_+|tetratricopeptide-repeat-protein
MVKLIKFKNLGFITKFFNYFKSKMSITTLNTSQELFQELNINLDEVPLEYLADYTAITYFLTIEGSLPSHVSNLEKVRRYLESFYHLCQIKDWQRSLIVLQIEPEAKIQEELHNLLGIWGYHEQQKLIYQNLLYKVNPQCDATCLTGLGNVYDTQGNYSLAIEYHTKQLELAQEIGDDSGEWIALVGLGNVQKALGNFQDSLTYFHQVLDIARQIKDIRGEVIALGSLGNIYMGLNNNDESKEYAEKCLTLAQQHQFSLFEARAAIILGNISRDENNVQAALNWYHHGLEIAQELDDIAVIIDAMRALGDSYEELGNSLEALDWLHKSLEIAQEFGDKAIEAESWRGLGNAYATLGNLEQAIFYYQKRLNFLELTEDKANIASNLQGLALAYDKLNRLAEAIKYEEKRLKVLKELEDWQKVADCYAYLGYAHLGLNNYYEALENLMAALALQKEQGNQRVKANTLYNLAELMAHLDQITPALQLCQEGLTVAQECDLELVEEFKELQELIEAYSRQLIEEKDDEV
>NC_014534.1|WP_013334939.1|233414_234902_+|hypothetical-protein
MPRSARLHKERKAQVLEALKRKGFLTQGDLAAHLEVALSTINNFINSKPVYITKFEEICHALNLDKQAMLKPLNEEVNSNLASQEEIEKTSLFSFIAYDDYWVGRKDLITSLTEKLQGAFRFLFILGLTGIGKTALAERIILERQKTSSLTKSYDLKRVNFEALGNATDFMTVAIQWLESWNIPVASQQRNPEQVIWHLTQYLQHNTVLLLFDSFENLLVGNEEEGWGNLADNWWEKFFLSLLSAQSCQSRIIITSQDLPLSLVEQRYNQYWYCHLLTGLDENEQENLWEITGFNIDDNLEEKVLLMRLGKAYQGHPLVLRVISGEIWESFGGNVKAYWEDVKSKIETVETALAEAENEAQKQMGSEDNWKLHKLTRKVRLEVNKQRLTSVFKRLESQSTDAYYLICAASVYRIPVQVQGWLMQLAVLIKRIENQPCNEERQEMALEELCYRFLVEESVNPNNQRVLGLHHLIRSVALEHYQQLITKLKQRSKTA
>NC_014534.1|WP_013334937.1|228107_228383_-|hypothetical-protein
MKQNLPEDVLESMRYGLSDEEAISEGLVDPIDLYQPKLEREPDPVITRPEWGGLDQDEWEANMATEDQIVYIDLDEVIELYQAEQAKKAKK
>NC_014534.1|WP_013334936.1|226972_227296_+|hypothetical-protein
MTRLTQYEDFDILELENSIEKAYNAQNTAYCDREIQLDKSENDYGLYHVWYGRQCLGAFCRSFDDDCWLATPFYRNGCFGDSSSPSAFETHEQAQEYIVQAYLGWDN
>NC_014534.1|WP_013334755.1|226733_226976_+|hypothetical-protein
MTQNTEAVTTLHADELTVGDVIRHFTGDLWQVATEPIYTRAGMTFKVYDLSVNTIETQTVSFHPQWRFELVKYVSVEVAA
>NC_014534.1|WP_157871992.1|226303_226537_-|helix-turn-helix-domain-containing-protein
MTKDLRFICNLKQILEEKNLNQSELHRKSGVSMTTIRNLTSGAILERIDRGSTAKLLEALDCSFDQLYKIEWLEIED
>NC_014534.1|WP_013334935.1|225096_225867_-|hypothetical-protein
MEFSQQLAITLIESKDEFPVDFEEAWNWIGYSTKQKAKNKLLNNFEPEIDYQVLLNQTVKQSGRGGYNREQIRLTVDCLKSLGMMAGTQKGKEIRRYFLECERIAKQAIEIIPAQAQEIEKLKLEVELAKTQERLLITTQAIATLHGTEMVALILGKPEAIVTKTEKAETLVTVDQFGRAIEKYDGIGISYLARRYGFGKNTKACHHWLSTIGVSEEQWLTEPALVKAKKLPRDLLPWLDKQYANKKGTRQTLLGE
>NC_014534.1|WP_013334934.1|222728_224771_+|CHASE2-domain-containing-protein
MRNLKPFKLTKANLSILIGLGLSLVIIGLRMLGIFQGWELHLIDFYFNLKPIEKVDERIILVGVTEKDIDKLQANRLSDLYLTKLIKKIESGKPVAIGLDIYRDHPVAPSYQELFELSKQGIDIFKTYPIPPGHEDFINLFKENANLFSIGKFLGIKDDPDFDKIKPPPIPQTQQTGSEASIDSDGFQRLAYLWPVTNPPYVKSLAWALAEFYLKQKGILIKLDEQGENLRIQDKTFYVFNNYSGPYTKADDAGYQILVNWRKAKFKVVSITDVIEGKVAEQNFRDRLVFVGAYAPSLKDQFLTPLSRTSESGSPRRLHGIEIQAQVSSQILSTVFDNNPSITVWTEPWISAWICLWGLAGVICVLRFGAEKLIQISSYLLGATILLFIVGFATFLQGHWISVVPAVLAILLSGASTLALDSYWQIIALNQRLENQLDKQRAYRILAILGNDLAQNLVTPFCYLQNSFSSLKNLEENISKIFFRLPDPELKQKAISQSAKLLFITQQQKEQLDKIRFNLGMSIPHLEGLLQNDFLELGQYSLSIAELLERLINNSASVFYECYQLDLKSILKIQVSLTGFKIYDPMNFLVSIYVILDEIFKAGRVIQNRKNFSITILDKAEKENYIIFIITDCIYDYKSLALLLAVEDRLNQYQGLISQMLSQNVYCWKIQLPLSDGLMF
>NC_014534.1|WP_041934256.1|222157_222760_+|hypothetical-protein
MKLLRLRFLGNFFWAIFIGFLLMSWELPLCPVNPPNREQRNRSQRRNTQSQQTLESGKKWGQGMRGCPYIVGKLAILGAEGESTYFLNTGKENPIVVYQIISDNPENFVITLTEVRGKFERLLIYEKKLVVQGNKYLLIQLPSLKQQQQYELSAAILCEGKAAYGTTLDVWVNRVEEITSFDQLVEKITKDEKFEALQIN
>NC_014534.1|WP_013334931.1|220891_221926_+|IS701-family-transposase
MRQQTKPSTAKCDLDIYTNYLIAEPKWSGCSRLGQIMDISHDSANRFLLRENYEPKDLFDEVKKFINLTGGTLSADDTIIEKLYSNPSSCKLIGYYWSGKHKKVIKGINLITVYYTDLNGNSVPINYRLYDKEEGKTKNEYLKEMIEEVLEWGIVPKTITTDSWYSSKNNLKFFKDKKLDFLVGIAKNRQVKVLGGKFCKVEQLEIPEDGLKVYLKEFGWVKVFQRVFKNEKPRYYLIYQTEESESDNKLLTRNQLRYLCSIHWGIECYHRALKQLCGLNKFLVRTSQSIATHIFCSLRAFCQLELMRIQETIFTWYEVQRELYLKVAREFILKRLEEKNTLAA
>NC_014534.1|WP_013334941.1|237313_239329_+|CRISPR-associated-endonuclease-Cas1
MQFPLNELYYAWEQVRRGSPSPGIDGITTDLFAGVKKDELIRLQQELIEEIYQPYPARGFYLPKNNGDKRLLGIPTVRDRVVQRWLLEEMYLPLEEVFTDCSYAYRPGRGIQMAVKHLYYYYQIQPKWIIKSDIRSFFDSLNWSILLSTLEHLKLDPIIQQLVEQQLKSGIVLNGRYFPRNQGVLQGAVLSGALANLYLSEFDRKCLEKGINLVRYGDDFVAACHSLGEAERTLNLITQWLDRIYLQLHPKKTEIYAPDQEFTFLGYLFKKGQVYAPLPPEPRKKGYPLDPSGMPRRPRPIYIHSFLSQPPKICSLKPKTSTQPKILTNPKHYFVDTMTTLYITDQGSYLKAQGYQFHIFYQRELRCKIPVNQVSHIVLFGCCNITHGAVRLALTRRIPLLYLSQRGRYFGRLETEGQAKVEYLSQQVKRAENSEFTRLQAENIVRAKLNNSRVLLMRLNRRRSNSSVKQAIANLEKLRDNLPLANTMDELRGYEGKAATVYFQALGSLFQAPFTFEKRSKRPPTDPVNSLLSLGYTLLSQNMHSFVEAMGLHTHFGNLHVPRNNHPALVSDLIEEFRAPLVDSLVVYLVNKKIFTPEDFTPPDGRNGVYLHPDSLKKFLKHWEEKLHSEITHPYTQYKVSMRRCLELQVREYIACLMGDTDGYRPMLWAK
>NC_014534.1|WP_013334942.1|239354_239645_+|CRISPR-associated-endonuclease-Cas2
MTNKTLYLVCYDIVQDSRRNRVSKLLEAYGCRVQKSVFEILAAKSQYDKLKHKLEKMLNLDEDQLRFYIIPEHSRSKTLILGIQPDFYVDDTAFII
>NC_014534.1|WP_013334943.1|239672_239981_+|hypothetical-protein
MGVSTKKQMKQERAPPSIPLFSLQFTHKAQKQLKSLSPQVRQQYQKAFHLLSTQGTHYRSLRTHRYQQKKSTIWGSSASMFLRFYWKYQDSSVILIIFLGSH
>NC_014534.1|WP_049802803.1|240080_240617_+|hypothetical-protein
MYQQKASSIDLYSSDYREALSDFGVVSLIEKLEQLTENQLQKPEIEQLTRLLIQQLINTLSYDWIDSYLNVIEKGQGDIISHLLSCNQHLPIPWDSPSFFLNAAKPMYAVGTVVRWRTFDEPELTDWGIVMGRFYGYAPENGRWMWCYLILLDIDAPSALWCVVDTAWEQDLERFEDE
>NC_014534.1|WP_013334945.1|240609_240906_+|hypothetical-protein
MSKQKPLRYRERKLLRVYAHCELSMTPQAFYGKWDVNYEQIAEICHRSLSTVRGWFQQGEYYRSPNSSDLRHLAMMDFIWQEFEAIPDELWQKLCNSD
>NC_014534.1|WP_013334946.1|241082_241592_-|hypothetical-protein
MINKIKHILDIFGYISTIIVIIITVKGIILWVRGILPVLLRLGNGLAKSRIAIFAKGEHLSILTNLLKDSGLFTRINIIYISDKSDIGRSENVSLYLVFWHDWENDIDDILSQKKDRVPLIIYSPPNLGRIPDDKMRLLNEKRNTIVTNFRGRLLNDIMISLITGSYEK
>NC_014534.1|WP_013334947.1|242583_243426_+|toll/interleukin-1-receptor-domain-containing-protein
MKVFISWSGKTSRQIAESFRELLPYMFERIQPFASFEDIKKGEQGIQKILQELENSKFGIICLTQESLNSPWLNFEAGALAKTRDSQLYTFLFGITRQDLNFSPLRDFQSTYYDKADVKQLMKTMNENYDSPLNETIFNNKFDDFWIKLSTKLDPIYESLKKNVTLILEEQELVITQEINDIKSIFSNLNLQTYLIEDIKNISLSSDLIIYVYSKSHQSKDKLQQIVDYIKTQTQQVKPSLIIYTLDNKRLEGDEWTMAKDYIFANFPQTLIERCKEVLK
>NC_014534.1|WP_013334948.1|243524_246425_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MCQSYWEAKIRGIIHPFNLTKIENLIGQNNENKGYWETLKVLLAQSTLDLNIITLAAEIANASDRTVLNSLSISLENNNDFKVSHLLSGDSLNLSLSYSNYQKLLTSAASQQPLSHSSSENTNTIELEEIKELYWWLWRCLPEIICQKLSNQDNFLLPASLILPDASIWSYASITSAIAGALVGYSPSQQQEKTSNQPQTPYLATFSFTPIQEIIKASRKMRDFWAGSWVLHYLSAKVCWKLAQIYGADCLIYPSLFQQPLIDHWLRNKWPNFSHWIDKPTEKAILTAGFPNVIVILLPSDKVPSAMQTARETVIQEWLVLGKKVFKELENRRWTRELSENSPTWQEWLRYQWQTYWTALPINNKVDPLTWQIKENSEAFQQWQDELNRICQLNEENKLFNLKEHQFIQAVAQEKPDLRVNIGSWWCYLFDQLRLTAGSVKNSRNWCIPSSFYPRSTISGLGSVVYPQPQDYRQRVTEGDTRQYWQEQGGLFDGNEQLNATEVLKRGLHRILPELLFNDPNKKIPYYYPDLSSGVAGWLKFYPDRESNFIKACEAVKAKFDWTYRKRHSNDKRKPLEFPAILPWGIPWIDEDSRRKDWPNPRLLNAGWLIDDFPLDTDESLQIQKDEAAKLRNCISKYFNQGNNPTDWYVIATGDGDGMSKWLKGDKLNNYADYMLLNQPISNNESINRAIQGISGIKKRMGPSTHNALSRALLDFSNRLVPYLTEERYAGRLIYSGGDDVLAYTNLWEWDNWLWDIRECFRGKEDPRGEFNHEGNYWKRKSDNSRPLFTMGKNATVSFGVVIAHHSVPLAIALENLWDAEKKAKNYQHQDKKKDAVQVRVLFGNGNKLQALAQFDLFYHWKQLIELKLTKSIEPSLFEIAAQLWEQHPAPCINAIKPWTIAFCERREGLQGEDKERFQNQLEDTLTAIYNNTPEPPDSEIKNWLKLAAFVLRNRNIKPIQGENNE
>NC_014534.1|WP_013334949.1|246417_247581_+|CRISPR-associated-protein-Cmr3
MNNLKWYRITPSDVFLFRDAKPFSPGARAWAGSIFPPPGQAIAGAIRDLIQSNITIKLTGAFLTYEDELYFPFPFSYNQEHLCKRENNTAVPIPVVPLNWDNHHPLYNLLKTDPNLPQPLVFESKHPFNDKLEGQYCAYLDYETILEYLKTSQISVEKWQKNRIKDNESPQPWKIETRPHNTITQGTRQVLEEDGYFVENTIRLQDGWSLAVGIKAKNEGENLKLTDNSQIIRLGGEGHRAILESCPQLGEQWQELEKISEGNQKKAGKKIAYLVTPGVFERRQRNNHPHCKPSPWEWTTAYPNNPNQEKGCLVSFATDKPLVISNRMRFGDNISTPAPQVYAAPAGSVYYLESDSEITLYQDSNASKQIQRWRDLGYSELLWISYQ
>NC_014534.1|WP_013334950.1|247592_248618_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTQLNCVYLYLYSPLHTGGTTQEGNLVGIARESHTNLPYIPSSTIRGRLRASIEDKDLRVQLFGPELKDIAPPSNENLSNASEEVSNNSEADQTSNSNNLEQGDIWIGDGSLLWFPLASLSHGVVWITCPRLLQRWKRYYPSLADIPQAGYYTNLDTKNPIYLRDAVVKNGLNKWDKWDKFIPKGNVNTEIDSVLLLPNQHCATLIQMGLWRQVKIKLDEHKSVEGGFRYEEAIPSDTLMYFPWGLTAKVRDIDEIELENENGKKQKELHAKRIKLAQKSQIESPKDIEIVNKLFTKHLENKNQQILQIGGQESLGRGFVEQWIWNHKNTSEKTHSQPMEV

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Crispr_ID: NC_014534_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_5

241869-242349

TypeIII

Consensus_repeat	Method
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	PILER-CR
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CRISPRCasFinder
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CRT

6 spacers

cas2,cas1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

The CRISPR arrays of NC_014534_5

>merge|NC_014534|5|241869-242349|PILER-CR,CRISPRCasFinder,CRT
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAACTTCATCTTCTGGTATCTCCTCTATCCTTAGCATCTGCTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAACTTATAGTTCCCTCCACTTATTAATGCCATCTCTCCTGTCAACTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAACCCTGACAAGCAAGCAACGATATCTCCTTTGATTGTTTGCTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAACTCCACAGAAGAAGGTAAAGTCTTCCTGCGCCCTCTTATCTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAACCCAGTATTCAAATTGGAGGTTCTCTAGCTCCAAAATAACTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAACTCCTTGGCAGAATCTTGGCGGCTTATAGAATCAAAAGTTTTTTCCTCTTAGGAGAAAGCTAATAGAATGGAAAC

>NC_014534|5|2|241869-242349|PILER-CR
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TTCATCTTCTGGTATCTCCTCTATCCTTAGCATCTG
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TTATAGTTCCCTCCACTTATTAATGCCATCTCTCCTGTCAA
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CCTGACAAGCAAGCAACGATATCTCCTTTGATTGTTTG
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TCCACAGAAGAAGGTAAAGTCTTCCTGCGCCCTCTTAT
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CCAGTATTCAAATTGGAGGTTCTCTAGCTCCAAAATAA
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TCCTTGGCAGAATCTTGGCGGCTTATAGAATCAAAAGT
TTTTTCCTCTTAGGAGAAAGCTAATAGAATGGAAAC

>NC_014534|5|5|241869-242349|CRISPRCasFinder
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TTCATCTTCTGGTATCTCCTCTATCCTTAGCATCTG
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TTATAGTTCCCTCCACTTATTAATGCCATCTCTCCTGTCAA
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CCTGACAAGCAAGCAACGATATCTCCTTTGATTGTTTG
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TCCACAGAAGAAGGTAAAGTCTTCCTGCGCCCTCTTAT
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CCAGTATTCAAATTGGAGGTTCTCTAGCTCCAAAATAA
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TCCTTGGCAGAATCTTGGCGGCTTATAGAATCAAAAGT
TTTTTCCTCTTAGGAGAAAGCTAATAGAATGGAAAC

>NC_014534|5|2|241869-242349|CRT
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TTCATCTTCTGGTATCTCCTCTATCCTTAGCATCTG
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TTATAGTTCCCTCCACTTATTAATGCCATCTCTCCTGTCAA
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CCTGACAAGCAAGCAACGATATCTCCTTTGATTGTTTG
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TCCACAGAAGAAGGTAAAGTCTTCCTGCGCCCTCTTAT
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	CCAGTATTCAAATTGGAGGTTCTCTAGCTCCAAAATAA
CTTTTCCTCTTAGGAGGAAGCTAATAGAATGGAAAC	TCCTTGGCAGAATCTTGGCGGCTTATAGAATCAAAAGT
TTTTTCCTCTTAGGAGAAAGCTAATAGAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334941.1\|237313_239329_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_014534.1\|WP_013334939.1\|233414_234902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
NC_014534.1\|WP_013334942.1\|239354_239645_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014534.1\|WP_013334943.1\|239672_239981_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334954.1\|252088_252712_+\|response-regulator-receiver-protein	unknown	unknown	gnl\|CDD\|381098
NC_014534.1\|WP_049802803.1\|240080_240617_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334948.1\|243524_246425_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_014534.1\|WP_013334945.1\|240609_240906_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334952.1\|249106_251194_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_014534.1\|WP_013334949.1\|246417_247581_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_014534.1\|WP_083786955.1\|234921_236499_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|380042
NC_014534.1\|WP_013334947.1\|242583_243426_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_014534.1\|WP_013334955.1\|253375_253804_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_014534.1\|WP_013334936.1\|226972_227296_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334946.1\|241082_241592_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334950.1\|247592_248618_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|274210
NC_014534.1\|WP_013334951.1\|248624_249104_+\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_014534.1\|WP_013334956.1\|254090_254366_+\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NC_014534.1\|WP_013334953.1\|251309_251981_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334937.1\|228107_228383_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334941.1\|237313_239329_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.80297e-117
NC_014534.1\|WP_013334942.1\|239354_239645_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.45301e-25
NC_014534.1\|WP_013334949.1\|246417_247581_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.25295e-57
NC_014534.1\|WP_013334954.1\|252088_252712_+\|response-regulator-receiver-protein	gnl\|CDD\|381098	cd17544, REC_2_GGDEF, second phosphoacceptor receiver (REC) domain of uncharacterized GGDEF domain proteins. This family is composed of uncharacterized PleD-like response regulators that contain two N-terminal REC domains and a C-terminal diguanylate cyclase output domain with the characteristic GGDEF motif at the active site. Unlike PleD which contains a REC-like adaptor domain, the second REC domain of these uncharacterized GGDEF domain proteins, described in this model, contains characteristic metal-binding and active site residues. PleD response regulators are global regulators of cell metabolism in some important human pathogens. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.75625e-07
NC_014534.1\|WP_013334956.1\|254090_254366_+\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	1.5684e-19
NC_014534.1\|WP_013334948.1\|243524_246425_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	1.19277e-38
NC_014534.1\|WP_013334952.1\|249106_251194_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	8.15869e-15
NC_014534.1\|WP_083786955.1\|234921_236499_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	9.61798e-08
NC_014534.1\|WP_013334947.1\|242583_243426_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	6.5061e-08
NC_014534.1\|WP_013334955.1\|253375_253804_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	7.72711e-06
NC_014534.1\|WP_013334939.1\|233414_234902_+\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00559852
NC_014534.1\|WP_013334950.1\|247592_248618_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	4.42107e-24

>NC_014534.1|WP_013334946.1|241082_241592_-|hypothetical-protein
MINKIKHILDIFGYISTIIVIIITVKGIILWVRGILPVLLRLGNGLAKSRIAIFAKGEHLSILTNLLKDSGLFTRINIIYISDKSDIGRSENVSLYLVFWHDWENDIDDILSQKKDRVPLIIYSPPNLGRIPDDKMRLLNEKRNTIVTNFRGRLLNDIMISLITGSYEK
>NC_014534.1|WP_013334945.1|240609_240906_+|hypothetical-protein
MSKQKPLRYRERKLLRVYAHCELSMTPQAFYGKWDVNYEQIAEICHRSLSTVRGWFQQGEYYRSPNSSDLRHLAMMDFIWQEFEAIPDELWQKLCNSD
>NC_014534.1|WP_049802803.1|240080_240617_+|hypothetical-protein
MYQQKASSIDLYSSDYREALSDFGVVSLIEKLEQLTENQLQKPEIEQLTRLLIQQLINTLSYDWIDSYLNVIEKGQGDIISHLLSCNQHLPIPWDSPSFFLNAAKPMYAVGTVVRWRTFDEPELTDWGIVMGRFYGYAPENGRWMWCYLILLDIDAPSALWCVVDTAWEQDLERFEDE
>NC_014534.1|WP_013334943.1|239672_239981_+|hypothetical-protein
MGVSTKKQMKQERAPPSIPLFSLQFTHKAQKQLKSLSPQVRQQYQKAFHLLSTQGTHYRSLRTHRYQQKKSTIWGSSASMFLRFYWKYQDSSVILIIFLGSH
>NC_014534.1|WP_013334942.1|239354_239645_+|CRISPR-associated-endonuclease-Cas2
MTNKTLYLVCYDIVQDSRRNRVSKLLEAYGCRVQKSVFEILAAKSQYDKLKHKLEKMLNLDEDQLRFYIIPEHSRSKTLILGIQPDFYVDDTAFII
>NC_014534.1|WP_013334941.1|237313_239329_+|CRISPR-associated-endonuclease-Cas1
MQFPLNELYYAWEQVRRGSPSPGIDGITTDLFAGVKKDELIRLQQELIEEIYQPYPARGFYLPKNNGDKRLLGIPTVRDRVVQRWLLEEMYLPLEEVFTDCSYAYRPGRGIQMAVKHLYYYYQIQPKWIIKSDIRSFFDSLNWSILLSTLEHLKLDPIIQQLVEQQLKSGIVLNGRYFPRNQGVLQGAVLSGALANLYLSEFDRKCLEKGINLVRYGDDFVAACHSLGEAERTLNLITQWLDRIYLQLHPKKTEIYAPDQEFTFLGYLFKKGQVYAPLPPEPRKKGYPLDPSGMPRRPRPIYIHSFLSQPPKICSLKPKTSTQPKILTNPKHYFVDTMTTLYITDQGSYLKAQGYQFHIFYQRELRCKIPVNQVSHIVLFGCCNITHGAVRLALTRRIPLLYLSQRGRYFGRLETEGQAKVEYLSQQVKRAENSEFTRLQAENIVRAKLNNSRVLLMRLNRRRSNSSVKQAIANLEKLRDNLPLANTMDELRGYEGKAATVYFQALGSLFQAPFTFEKRSKRPPTDPVNSLLSLGYTLLSQNMHSFVEAMGLHTHFGNLHVPRNNHPALVSDLIEEFRAPLVDSLVVYLVNKKIFTPEDFTPPDGRNGVYLHPDSLKKFLKHWEEKLHSEITHPYTQYKVSMRRCLELQVREYIACLMGDTDGYRPMLWAK
>NC_014534.1|WP_083786955.1|234921_236499_+|tetratricopeptide-repeat-protein
MVKLIKFKNLGFITKFFNYFKSKMSITTLNTSQELFQELNINLDEVPLEYLADYTAITYFLTIEGSLPSHVSNLEKVRRYLESFYHLCQIKDWQRSLIVLQIEPEAKIQEELHNLLGIWGYHEQQKLIYQNLLYKVNPQCDATCLTGLGNVYDTQGNYSLAIEYHTKQLELAQEIGDDSGEWIALVGLGNVQKALGNFQDSLTYFHQVLDIARQIKDIRGEVIALGSLGNIYMGLNNNDESKEYAEKCLTLAQQHQFSLFEARAAIILGNISRDENNVQAALNWYHHGLEIAQELDDIAVIIDAMRALGDSYEELGNSLEALDWLHKSLEIAQEFGDKAIEAESWRGLGNAYATLGNLEQAIFYYQKRLNFLELTEDKANIASNLQGLALAYDKLNRLAEAIKYEEKRLKVLKELEDWQKVADCYAYLGYAHLGLNNYYEALENLMAALALQKEQGNQRVKANTLYNLAELMAHLDQITPALQLCQEGLTVAQECDLELVEEFKELQELIEAYSRQLIEEKDDEV
>NC_014534.1|WP_013334939.1|233414_234902_+|hypothetical-protein
MPRSARLHKERKAQVLEALKRKGFLTQGDLAAHLEVALSTINNFINSKPVYITKFEEICHALNLDKQAMLKPLNEEVNSNLASQEEIEKTSLFSFIAYDDYWVGRKDLITSLTEKLQGAFRFLFILGLTGIGKTALAERIILERQKTSSLTKSYDLKRVNFEALGNATDFMTVAIQWLESWNIPVASQQRNPEQVIWHLTQYLQHNTVLLLFDSFENLLVGNEEEGWGNLADNWWEKFFLSLLSAQSCQSRIIITSQDLPLSLVEQRYNQYWYCHLLTGLDENEQENLWEITGFNIDDNLEEKVLLMRLGKAYQGHPLVLRVISGEIWESFGGNVKAYWEDVKSKIETVETALAEAENEAQKQMGSEDNWKLHKLTRKVRLEVNKQRLTSVFKRLESQSTDAYYLICAASVYRIPVQVQGWLMQLAVLIKRIENQPCNEERQEMALEELCYRFLVEESVNPNNQRVLGLHHLIRSVALEHYQQLITKLKQRSKTA
>NC_014534.1|WP_013334937.1|228107_228383_-|hypothetical-protein
MKQNLPEDVLESMRYGLSDEEAISEGLVDPIDLYQPKLEREPDPVITRPEWGGLDQDEWEANMATEDQIVYIDLDEVIELYQAEQAKKAKK
>NC_014534.1|WP_013334936.1|226972_227296_+|hypothetical-protein
MTRLTQYEDFDILELENSIEKAYNAQNTAYCDREIQLDKSENDYGLYHVWYGRQCLGAFCRSFDDDCWLATPFYRNGCFGDSSSPSAFETHEQAQEYIVQAYLGWDN
>NC_014534.1|WP_013334947.1|242583_243426_+|toll/interleukin-1-receptor-domain-containing-protein
MKVFISWSGKTSRQIAESFRELLPYMFERIQPFASFEDIKKGEQGIQKILQELENSKFGIICLTQESLNSPWLNFEAGALAKTRDSQLYTFLFGITRQDLNFSPLRDFQSTYYDKADVKQLMKTMNENYDSPLNETIFNNKFDDFWIKLSTKLDPIYESLKKNVTLILEEQELVITQEINDIKSIFSNLNLQTYLIEDIKNISLSSDLIIYVYSKSHQSKDKLQQIVDYIKTQTQQVKPSLIIYTLDNKRLEGDEWTMAKDYIFANFPQTLIERCKEVLK
>NC_014534.1|WP_013334948.1|243524_246425_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MCQSYWEAKIRGIIHPFNLTKIENLIGQNNENKGYWETLKVLLAQSTLDLNIITLAAEIANASDRTVLNSLSISLENNNDFKVSHLLSGDSLNLSLSYSNYQKLLTSAASQQPLSHSSSENTNTIELEEIKELYWWLWRCLPEIICQKLSNQDNFLLPASLILPDASIWSYASITSAIAGALVGYSPSQQQEKTSNQPQTPYLATFSFTPIQEIIKASRKMRDFWAGSWVLHYLSAKVCWKLAQIYGADCLIYPSLFQQPLIDHWLRNKWPNFSHWIDKPTEKAILTAGFPNVIVILLPSDKVPSAMQTARETVIQEWLVLGKKVFKELENRRWTRELSENSPTWQEWLRYQWQTYWTALPINNKVDPLTWQIKENSEAFQQWQDELNRICQLNEENKLFNLKEHQFIQAVAQEKPDLRVNIGSWWCYLFDQLRLTAGSVKNSRNWCIPSSFYPRSTISGLGSVVYPQPQDYRQRVTEGDTRQYWQEQGGLFDGNEQLNATEVLKRGLHRILPELLFNDPNKKIPYYYPDLSSGVAGWLKFYPDRESNFIKACEAVKAKFDWTYRKRHSNDKRKPLEFPAILPWGIPWIDEDSRRKDWPNPRLLNAGWLIDDFPLDTDESLQIQKDEAAKLRNCISKYFNQGNNPTDWYVIATGDGDGMSKWLKGDKLNNYADYMLLNQPISNNESINRAIQGISGIKKRMGPSTHNALSRALLDFSNRLVPYLTEERYAGRLIYSGGDDVLAYTNLWEWDNWLWDIRECFRGKEDPRGEFNHEGNYWKRKSDNSRPLFTMGKNATVSFGVVIAHHSVPLAIALENLWDAEKKAKNYQHQDKKKDAVQVRVLFGNGNKLQALAQFDLFYHWKQLIELKLTKSIEPSLFEIAAQLWEQHPAPCINAIKPWTIAFCERREGLQGEDKERFQNQLEDTLTAIYNNTPEPPDSEIKNWLKLAAFVLRNRNIKPIQGENNE
>NC_014534.1|WP_013334949.1|246417_247581_+|CRISPR-associated-protein-Cmr3
MNNLKWYRITPSDVFLFRDAKPFSPGARAWAGSIFPPPGQAIAGAIRDLIQSNITIKLTGAFLTYEDELYFPFPFSYNQEHLCKRENNTAVPIPVVPLNWDNHHPLYNLLKTDPNLPQPLVFESKHPFNDKLEGQYCAYLDYETILEYLKTSQISVEKWQKNRIKDNESPQPWKIETRPHNTITQGTRQVLEEDGYFVENTIRLQDGWSLAVGIKAKNEGENLKLTDNSQIIRLGGEGHRAILESCPQLGEQWQELEKISEGNQKKAGKKIAYLVTPGVFERRQRNNHPHCKPSPWEWTTAYPNNPNQEKGCLVSFATDKPLVISNRMRFGDNISTPAPQVYAAPAGSVYYLESDSEITLYQDSNASKQIQRWRDLGYSELLWISYQ
>NC_014534.1|WP_013334950.1|247592_248618_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTQLNCVYLYLYSPLHTGGTTQEGNLVGIARESHTNLPYIPSSTIRGRLRASIEDKDLRVQLFGPELKDIAPPSNENLSNASEEVSNNSEADQTSNSNNLEQGDIWIGDGSLLWFPLASLSHGVVWITCPRLLQRWKRYYPSLADIPQAGYYTNLDTKNPIYLRDAVVKNGLNKWDKWDKFIPKGNVNTEIDSVLLLPNQHCATLIQMGLWRQVKIKLDEHKSVEGGFRYEEAIPSDTLMYFPWGLTAKVRDIDEIELENENGKKQKELHAKRIKLAQKSQIESPKDIEIVNKLFTKHLENKNQQILQIGGQESLGRGFVEQWIWNHKNTSEKTHSQPMEV
>NC_014534.1|WP_013334951.1|248624_249104_+|hypothetical-protein
MTVQVFDPRALAEPVYDTLSKLRQEYDKALANNIINKEQRDSHLKEQKNQAVELYTYLATWGLMRLKAEELALNKKNLNSNSSIKERVETSQYGKLEVVREFFECLKKLIPDSENKLELRNLSKMDVDEYLGIMGLGLAIAQEFSFWATAIYYDIKGDE
>NC_014534.1|WP_013334952.1|249106_251194_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MKNDHKSTSKAFERPPNPKSAKSSQSSIPKKMNFSPILKDENLFPFLIDFQNLPDLPVDASFVEYLRWMRELKTEDSEQNKAENNATKLHLLQLAQDEKYVNYCKYLKRANQRIKNIVSLKEGKKIIVTCPWRIRVGGHRGPESILLPAFDALGIPFIPSSTLRGIARNQAIREVMKNNPDLSYQKAEQHETIIDHFGSLETKDKSKREGKVTFLDAYPVDDKSPSGGLSLDIANNVWKWGENNLPEYQPNPNLFLSLKQPTFLIGIIPNHYCEKKQLNKVEQWLLKGLASGVGSQINSGYGCLTKSGKYENDENKQNILVEVEFTLKGQLINSYKYYNNLSRPYKSEKNCIKRDKKKRPQTLDTSQPEVRPIAFKSMLRYWFRVIALGVLPKIRVKELEAFIFGGIEPKHRGLIQVQIHNSDDGNLLTQKNFGTQSGKLIILASYELSQDNYQLLTDFIEALTWLMFHLGGVGLGARRPLYERKRYNDQGNRVPPYWRGTDLKAENQDEFWKIPETIEEFKKRFHARLNDFYNNLSKIQNSYIQFMQKLQPSVNHENYKINSQCPLKVEKIKPRSWDEALDQNCRVIVCQGISNNSKNFALSLLHSENLNKKYLNSSGKNKYLCGDDGCPSPVLVTHLKNYEVVVIFGASKILEKPKNEGEKAKQINPRYQYFTEIKRQCEQVKILWDGLEFPS
>NC_014534.1|WP_013334953.1|251309_251981_-|hypothetical-protein
MLQYSPFPYSSISPDNPLKHIFIAQCYTPLINPTFALTHYADLLLSKCSDAETQQLTERIKQQVKEIDLVVKRFLLFIDQPPQWEQLSNASPNQIIREVLQILNGCWPSNLKICSDFDECLDKPLSIPVYLLEALSFHLLSSSLESLSIDLQSDFNFEPFVHISTQFGQDKWLLIIEDNSRSKRLHSLAIEQFLVQAGGEINFFSFTEKPQFILSFPITSVFD
>NC_014534.1|WP_013334954.1|252088_252712_+|response-regulator-receiver-protein
MPSATCSILIVDPHAPSREVMKLYLSSVMKERQQRELTFFEAADGREAIALLITHKEIKVMISELNLTQLGSLEMIDIVLGKWGLQVGIFIVTGVSNHLIAEVAGDLYVYGVRGIFNKLQLDYYELSRRIEKYLEISSTPPARERGFYCEHRQYEKEDGTSSTYTYIKWMDDSGKQSNLCVGDLGNERDRIYDNLPGIRSKKKEEKR
>NC_014534.1|WP_013334955.1|253375_253804_+|helix-turn-helix-domain-containing-protein
MLTDAQIREIYQKTEETSVIKKTFVVLLKKSGVATGQIAEALGCSSQTIRNWVLPFDNGIDAEELPKKLRDGRKGGNHRKVDDLYIKRLKELLSTDPRTLGYSFNRWTQTALAKHLALETGIEVKQQCISRLIKKYYQNSAK
>NC_014534.1|WP_013334956.1|254090_254366_+|UPF0175-family-protein
MAVKSIHIKVSSESVSQGEQAIRLEIALQLYEQNIFTFGQARRLANLSIWEFQQLLGQKNISRHYDEEDLAQDLTTKNKDCVVNGDESLFR

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Crispr_ID: NC_014534_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_6

280376-280489

TypeV

Consensus_repeat	Method
ATTATGGCGACGTACAGAAGCAGCAGG	CRISPRCasFinder

1 spacers

cas14j,RT

The CRISPR arrays of NC_014534_6

>merge|NC_014534|6|280376-280489|CRISPRCasFinder
ATTATGGCGACGTACAGAAGCAGCAGGGAGGTATAACTCCTGACGTGCAATAGGGATAATAACATCATTAGCGATTGGCTGAACCTGATTATGGCGACGTACAGCAGCAGCAGG

>NC_014534|6|6|280376-280489|CRISPRCasFinder
ATTATGGCGACGTACAGAAGCAGCAGG	GAGGTATAACTCCTGACGTGCAATAGGGATAATAACATCATTAGCGATTGGCTGAACCTG
ATTATGGCGACGTACAGCAGCAGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334985.1\|285875_286358_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334976.1\|279799_280045_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334987.1\|286733_287570_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NC_014534.1\|WP_013334978.1\|280817_281030_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334981.1\|282511_282700_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334974.1\|276898_278125_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_014534.1\|WP_013334979.1\|281095_281560_-\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NC_014534.1\|WP_157872032.1\|270235_271360_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212669
NC_014534.1\|WP_157872033.1\|271370_271781_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_041934263.1\|279153_279570_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334980.1\|282019_282418_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334972.1\|271795_272614_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334973.1\|273242_274871_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_014534.1\|WP_013334986.1\|286448_286667_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_157872034.1\|272832_273021_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334982.1\|282816_283311_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372287
NC_014534.1\|WP_013334984.1\|283974_285822_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319261
NC_014534.1\|WP_049802805.1\|275433_276660_-\|transposase	cas14j	-	gnl\|CDD\|223747
NC_014534.1\|WP_013334983.1\|283416_283899_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_157872035.1\|273033_273174_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334987.1\|286733_287570_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	8.70466e-06
NC_014534.1\|WP_013334973.1\|273242_274871_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	5.49911e-126
NC_014534.1\|WP_013334982.1\|282816_283311_-\|hypothetical-protein	gnl\|CDD\|372287	pfam12747, DdrB, DdrB-like protein. This family includes the Deinococcus DdrB protein which is a ssDNA binding protein. This family also includes some possibly distantly related cyanobacterial proteins. However, these are not strongly supported. The structure of DdrB is known.	1.24586e-45
NC_014534.1\|WP_013334974.1\|276898_278125_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.72335e-59
NC_014534.1\|WP_013334984.1\|283974_285822_-\|hypothetical-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	4.10632e-06
NC_014534.1\|WP_013334979.1\|281095_281560_-\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	6.72365e-22
NC_014534.1\|WP_157872032.1\|270235_271360_+\|hypothetical-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	1.904e-19
NC_014534.1\|WP_049802805.1\|275433_276660_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.0738e-32

>NC_014534.1|WP_013334976.1|279799_280045_-|hypothetical-protein
MNINLQNFLKNVYHNHWNIDLAVNFLLKLRHQPEVAEILQSIWEESLIDHYRWTDTRKMLYVFLKNELSILKDIDLDSRRG
>NC_014534.1|WP_041934263.1|279153_279570_-|hypothetical-protein
MSRYQIEALNPQKYDVYIGFDLAGGSSFWTFFGQVLDLEIESQLDNLPPDVPIEEAEELEEKLVVLWVGSDYRHPIRSIAQLEQLLAPYAQITPDMKQQLLDDQERELHQPKTPLSGFVELFVRSQDSANSIQIDEPS
>NC_014534.1|WP_013334974.1|276898_278125_+|serine/threonine-protein-kinase
MWKKSPSKKRIKPQITPQFPYFSSQGYQVVEQLGQNWNAGRSTYKALMLKDETPVVIKEFRFHQGNWDSYKEIEREIQTLAKLKHPAIPNYLGNFETENSVCLVQEYIDASPLSLSHLTPDEVKRVAIQILEILVYLQSRPVLIFHRDIKPDNILLDYKNFQAYLVDFGLAREGSGTLGASTMFGGTPGFCPPEQLLARRLTCASDLYSLGATLIYLLSGNKPIAELINPNFEIDFHSSVPKNISFAMREWLSKMTQPDPKKRFSNAAVALQSLRPIEPILVDSLVSKDSVKQDRLAEIGVAPTVIALAIAAGSVFLILPPIIGKFKQLLQWLLLTNSRVGDNPLRGKAGFQIFLLAFGLIKTMLFIYLIVEIVFVLGAAQEGDDIKPHAVRVFGIIFVLISAQILTH
>NC_014534.1|WP_049802805.1|275433_276660_-|transposase
MLTFNYTYRIYPDATQETRLLEWLETSRACYNYALREIKDWIASRKSPVDRCSLEFEYIMLADYPFPSYSKQQNTLPKAKKIFPRLANAPSQVLQCTIRRLHDAWDFFKARGFGFPRYKKYGQMKSLLFPQFKTNPITGWQIALPKLGKVQINLHRPIPESFTVKQVRVIRKAKGWFAVITISSPESLPSTETPSGHFIGVDLNLGAYVATSDGYSSKRPKFYGTEQSKLKLLQRRLSRKNKRSKNYEKARLKVEKQHNHIAFKRKDHQFKLAHKLCDMGDSIFVEDIDFRIMAKGMLGKHTLDAGFGQLRDILKFVCWKRGKFFATVDHRGTSQTCPNCRTEVRKTLSDRIHDCKACGYVQDRDTASAQEICNRGIEKYCTLGLRGCDSFSRNQEMYTWGNRGKDSR
>NC_014534.1|WP_013334973.1|273242_274871_-|group-II-intron-reverse-transcriptase/maturase
MNTGQPMYEWNTIPWHKLEKNVFKLQKRIYQASRRGDIKQVRRLQRLLIKSWSAKTLAVRRVTQDNTGKKTAGVDGIKSLTPSQRLELVRNLDLNKKAKPIRRVWIPKPGKTEKRPLGIPVMHDRATQTLVKMAVEPQWEAVFEPNSFGFRPGRSCHDAIQALHDMLRHHDKYVLDADIAGCFDNINHETLIKKMNVSPHLSRMVRQWLKAGIFDNGAFQRNEKGTPQGGTISPLLANIALHGLENLIKSINKHAYIVRYADDFVVLHNELKVIEKCKKAIEEWLTEIGLELKPSKTKVINTLKSHDGKDPGFDFLSFNVRQYKVSKYNSGKRQKGFKTLIKPSKNSIQRHKDQIKRVVKEGKAKTQLAIIKELNPIIRGWCNYYSTKVSSEAFKYLTHFTVQSLMKWARRRHPKKTLHWIYRKYFGIHEGYQWTFTKEQSRVIRHSETQIERWVKVAGDRSPYDGDWVYWSTRMGRHPEAKKKVAYLLNQQKGKCSHCGLRFNMDDLMEIHHIDRNHNNNKWENLTLLHRHCHDEVHKTSA
>NC_014534.1|WP_157872035.1|273033_273174_-|hypothetical-protein
MLSLTTETACQVEVAGAMSLANWRRESLWTGISQGDLGSPNSTARG
>NC_014534.1|WP_157872034.1|272832_273021_+|hypothetical-protein
MWANILLMIGVSSGIVIGLHLPSGVVCRSSQSACYLLRFWGKKTAIDLNVKPKPKANNSKKQ
>NC_014534.1|WP_013334972.1|271795_272614_+|hypothetical-protein
MTDTLMSRKQLKEIYNCPDTKEINVIYKLLNWKLSKKLSEGEKNDIFDPAFNLKRSGKSDEEIRQELSDKIENEPDSKQSYSLEDLLNITKEDGLLIKASELVNLLQCCGLPEKDEYAQDEFETFLSACQLYKKEGKTYAEIAAHFKIEPESDKVTTNLADNLLVVTQEISDINAKEIGVQAGKDLVEVNRAISAGIVYGTLARLQNMTRTGELDALVKQQFRQGATDSLGKQLTQRVQQHLLERGETQTPHLLTEAREIKQLPQAEENPSP
>NC_014534.1|WP_157872033.1|271370_271781_+|hypothetical-protein
MKNGKFSSSVSVSLRYQAEPDTEDGVIINYIQQMSQKVSTPYKRTTILECWKNHWLPYAYEENGSKTPEQLRQLAIDCAEQLRAHAQKLEQRYGCSLPSPSPITPSTPSTNRVSQPEQVSLPSEVKPLINSLDFNL
>NC_014534.1|WP_157872032.1|270235_271360_+|hypothetical-protein
MKKLLTKKMSVPELIVSLDFGASLIKGVYTLGKKFEPKLLTLSPHLLPIPPTTDLEPYNAASLSLTASAWIECKGKRYAVGTLAKNRFNAPVLLELPKIESIIPRTLAAIGCIASAEGLEEFTLSLWISIPSNEYKEGLNISQKIKQSLLDFIFRGKRIVANLMDFSCKPEGAGIFLRIIGQANFNARKAAVLMLGYRNATILFYKEGLIEKITENYGFASIVEGIQSLALLPGDLDEVVGKIFEAGDKLDKKILKTLCFGDSADTSRINAIESAIQKSREEYFTLLNYWLGGKLIDGPEVIVVVGGTSHYPYVKNKLTQLFKKTQIKLDWGEELADKIGFVFKSQVASNPSLKYRLLDVYSLFLEQDTHQRRI
>NC_014534.1|WP_013334978.1|280817_281030_-|hypothetical-protein
MILAQTTLCESVQERNYLISLETEPDPVWHSIKQRSVSVSCDEGVEIEWDNWLEWYNHHECEEFKIIEIR
>NC_014534.1|WP_013334979.1|281095_281560_-|KTSC-domain-containing-protein
MKFYQIDLSKIRAIAHDGAVPLGQLSILIQEEGTLEVKTVPAPLQALEGIRAIASLAAGEEINIQPTLPPSRDELLDNITMISTTSLRCQGSSNIAAIGYESSLKVLQIEFISGSTYRYFNVSFQKFADFIAANSAGRYFNAEIKSQYSSEKVN
>NC_014534.1|WP_013334980.1|282019_282418_-|hypothetical-protein
MLILIYGRRQEISGLPNFHVLIVESEGQQFKWDYTNLIELENNLQNHLKQAQENWGLALPLTHYINKDQYPEYQDIVGRLDNYDMYCQWIAPSNWVCGFKDGDSVVASSFPSLTSLDRSICRLVDDEVIEPE
>NC_014534.1|WP_013334981.1|282511_282700_-|hypothetical-protein
MLTVLSPTSINSERDYLVVLSSSSSQRRVSVTWDEGVEIDWVDWLEAYNQFESEKFELVEII
>NC_014534.1|WP_013334982.1|282816_283311_-|hypothetical-protein
MIEQSKSNNGRFDSLLNPVVSILQGLRELFVLVREVKNLLAQQNELLKQNNELLQNLLDKENSSNQVEVNPNFQAGLSDYPTFDWAKIGATVISTDSDGPTVVEYEGLAFKRRRSSIDDVKGAAIWFSCSQKDNKDQLTYLRLITFKEQLKIRSLHGEIKEHLS
>NC_014534.1|WP_013334983.1|283416_283899_-|hypothetical-protein
MTAPTLTYSELSCFSGSDMVYRHIFRMAYTEGVRSIAQKGGAYWLLDAIGSYQPKNPKEPYLADFQLWILSILNAPHQPPEGIKYPFIVPSNSHYKAVLTCWHDTPETPSQEQSWKQSTRFILAQDIYSTNFPLAEISLYVCPTVVGDEELPLLMLPGEY
>NC_014534.1|WP_013334984.1|283974_285822_-|hypothetical-protein
MDEKIQFLAQTKLNQLKDQLETLEKSPIEGDSKQIKKYNQDLNYCRQKIANLESFLSFAVGQKVTKDGQIGEIGALVLSPGGMPEAWVSWTIGSAPIPEQPAKLQIVDEARELLLNSNSENDKQDLLSLPALNNGNTIPEEIPTPNVESSPEELEPKESSINEVRHDRTLVINEESEPSNNQLEPEQTSIPDEIFAIGEKSEALITERSDNPVIQDFNPSDIIIDEEFKALIPSLSLEEKEQLEANILAEGIRDPLVLWKDKNILLDGHNRSPIAQKYNLPFKTVAIELEDRDAARLWLINNQLGRRNLSPEQISYLRGQRYNLEKGQGAKLEDLKASQIDRTNRGSQNDTGSKNHSNDQNNDLEEPSGHFDHLINQEPSGHFDHLINQESSGHFDHLMTQQPSGQSDHLVKTAERLANVYNVGEKTIRRDAQFATAVDLIGEVLGQEIKQDILSRQIRLNKKAAIDLAQIASVDPQRAKEVLESWTSGQKPEIAKHLRLTPGCLVQVNSPDHRDLHERTVRVACVTAKRVQVWHRKIDTTMEMIKYNLDLDQVEFVPMSDKPHVQALNDRLEKLRQYNLDPFERDFLALFDRCVALTPAEEEYLSFVERRYLSL
>NC_014534.1|WP_013334985.1|285875_286358_-|hypothetical-protein
MLLILHNKLGLIERLLLGFNYNPLSIKEDQLDLVAVAETNILDEAWNWTQNCWPQAENAVARLAPQRSTDVGDIIQTESGESYLVDSSGFTLLEKQPIYAHVSQVVQYPTGEQGELFPTLSVKDWASLPLIETQRFSHSFYYLEIRNNFGQTLRLLRIYK
>NC_014534.1|WP_013334986.1|286448_286667_-|hypothetical-protein
MTNYLAAYYLDSCPLYWGLTTQKSEALFGPFDTTEEAWNFLNQFQNIIEELEKNPEQYPQAIKEKYLGFTSS
>NC_014534.1|WP_013334987.1|286733_287570_-|ImmA/IrrE-family-metallo-endopeptidase
MEKTKDALEKLEAGISELLTSNNWQQYLKKQSQFHRYSFNNTMLILLQCPHASRVAGYQQWQNLGRQVKKGEKGIKILAPLKRKVERETDNGNPEFKWILNGFKIVSVFDISQTEGDDLPQIVSSLTGDDQGLLNRLVAFSENNKVPVYFKGALGANGYCRYDRITGEPKEIVVDPLLPPLGKAKTLAHEIAHSILHKRGDYVEHTPTSTAELEAESVAFVILQHFGLDSSNYSFGYICSWQQEKDAIEQLKRSGASIQKAAQQVIDFLSIQSSYAVA

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Crispr_ID: NC_014534_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_7

290411-290684

TypeV

Consensus_repeat	Method
TGAGCAACGCCAATAGGCAGTAAACCATGATGTAC	CRISPRCasFinder

3 spacers

cas5,cas7,cas8b3,cas6

The CRISPR arrays of NC_014534_7

>merge|NC_014534|7|290411-290684|CRISPRCasFinder
TAGATAACGCCATTAGGCAGTTAGCCATGATGCACAATGGAACGGGCAAAATGTAAAATGTAAACGAATCCCTGAGCAACGCCAATAGGCAGTAAACCATGATGTACTATGCTTTATTTTGCTATTGATAGCCAAGGAACTGTTCAGTATTGAGCAACGCCAATAGGCAGTAAACCATGATGTACGACGCGGTTTCAGCAACTGAGGCGGGTTCAGCAACGAATCAAGCCCGATTTTCTTGAGCAACGCCAATAGGCAGTCAGCCATGACGCAC

>NC_014534|7|7|290411-290684|CRISPRCasFinder
TAGATAACGCCATTAGGCAGTTAGCCATGATGCAC	AATGGAACGGGCAAAATGTAAAATGTAAACGAATCCC
TGAGCAACGCCAATAGGCAGTAAACCATGATGTAC	TATGCTTTATTTTGCTATTGATAGCCAAGGAACTGTTCAGTAT
TGAGCAACGCCAATAGGCAGTAAACCATGATGTAC	GACGCGGTTTCAGCAACTGAGGCGGGTTCAGCAACGAATCAAGCCCGATTTTCT
TGAGCAACGCCAATAGGCAGTCAGCCATGACGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013334985.1\|285875_286358_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334994.1\|298776_299544_-\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|376440
NC_014534.1\|WP_013334993.1\|297774_298218_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334988.1\|287972_288383_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334995.1\|299594_300761_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|319251
NC_014534.1\|WP_013334989.1\|289193_290225_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_014534.1\|WP_013334996.1\|300745_301567_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_014534.1\|WP_013334982.1\|282816_283311_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372287
NC_014534.1\|WP_013334981.1\|282511_282700_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_041934265.1\|292325_293582_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NC_014534.1\|WP_049802809.1\|294258_296586_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_014534.1\|WP_013334986.1\|286448_286667_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334980.1\|282019_282418_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334992.1\|296585_297785_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377533
NC_014534.1\|WP_013334991.1\|291418_292324_-\|DevR-family-CRISPR-associated-autoregulator	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_014534.1\|WP_013334987.1\|286733_287570_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NC_014534.1\|WP_013334984.1\|283974_285822_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319261
NC_014534.1\|WP_071881455.1\|293683_294268_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_014534.1\|WP_013334983.1\|283416_283899_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013334990.1\|290778_291414_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013334994.1\|298776_299544_-\|MGMT-family-protein	gnl\|CDD\|376440	pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain. This domain is a 3 helical bundle.	5.94024e-11
NC_014534.1\|WP_013334987.1\|286733_287570_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	8.70466e-06
NC_014534.1\|WP_013334995.1\|299594_300761_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|319251	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member. Spo0J (stage 0 sporulation protein J) is a ParB family member, a critical component of the ParABS-type bacterial chromosome segregation system. The Spo0J N-terminal region acts in protein-protein interaction and is adjacent to the DNA-binding domain that binds to parS sites. Two Spo0J bind per parS site, and Spo0J interacts with neighbors via the N-terminal domain to form oligomers via an Arginine-rich patch (RRXR). This superfamily represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	6.88282e-19
NC_014534.1\|WP_013334989.1\|289193_290225_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.10224e-18
NC_014534.1\|WP_013334996.1\|300745_301567_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.09612e-38
NC_014534.1\|WP_013334982.1\|282816_283311_-\|hypothetical-protein	gnl\|CDD\|372287	pfam12747, DdrB, DdrB-like protein. This family includes the Deinococcus DdrB protein which is a ssDNA binding protein. This family also includes some possibly distantly related cyanobacterial proteins. However, these are not strongly supported. The structure of DdrB is known.	1.24586e-45
NC_014534.1\|WP_041934265.1\|292325_293582_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	2.16283e-46
NC_014534.1\|WP_049802809.1\|294258_296586_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.57144e-08
NC_014534.1\|WP_013334992.1\|296585_297785_+\|ATP-binding-protein	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	3.11374e-07
NC_014534.1\|WP_013334991.1\|291418_292324_-\|DevR-family-CRISPR-associated-autoregulator	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	7.48767e-21
NC_014534.1\|WP_013334984.1\|283974_285822_-\|hypothetical-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	4.10632e-06
NC_014534.1\|WP_071881455.1\|293683_294268_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	1.43763e-55
NC_014534.1\|WP_013334990.1\|290778_291414_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.30907e-109

>NC_014534.1|WP_013334989.1|289193_290225_+|TniQ-family-protein
MSNYNELDDGLEIVSLKSPETPKRSRLFSLEPVGIGTSQTESLSSYVNRLAEAHCVKSQKLIMLEIAPQILGKDYQSPLHSKDVSSLFGNTDAKPALNGMRDMKLLLVQALEKLTQRQDLKYLTCLSWKEVINKRGLFRQYRAWCPQCYEQCKQDKVSLYDPLLWSFKDVKFCLHHQCQLVDECPKCGSHLPVIANFLPLGHCFYCGEWLGDNKNKNPKCNFKNFPESLLIIKNIGDLIAVTPRLGSQPTLDEFIQKLQLILFCFEKVISQDLKHIKVLGKIIEHLKLNLSQHGDKPLNLIKIIIPVCSKAHISVSELFLEDLTGLSKILFDNFQINYQLPIL
>NC_014534.1|WP_013334988.1|287972_288383_-|hypothetical-protein
MNTNPIPEDLSVLVITNNLIVGNKSGLLILLSAIASALSDGGGVGEFLDPNGDAFEVDIKVCDNFEQLKSHTKSEPTGEINPNVEAVLTELMKRNSLLLILKTIKAICIKANNNNPYFDWDSDADVIAAIMERIEN
>NC_014534.1|WP_013334987.1|286733_287570_-|ImmA/IrrE-family-metallo-endopeptidase
MEKTKDALEKLEAGISELLTSNNWQQYLKKQSQFHRYSFNNTMLILLQCPHASRVAGYQQWQNLGRQVKKGEKGIKILAPLKRKVERETDNGNPEFKWILNGFKIVSVFDISQTEGDDLPQIVSSLTGDDQGLLNRLVAFSENNKVPVYFKGALGANGYCRYDRITGEPKEIVVDPLLPPLGKAKTLAHEIAHSILHKRGDYVEHTPTSTAELEAESVAFVILQHFGLDSSNYSFGYICSWQQEKDAIEQLKRSGASIQKAAQQVIDFLSIQSSYAVA
>NC_014534.1|WP_013334986.1|286448_286667_-|hypothetical-protein
MTNYLAAYYLDSCPLYWGLTTQKSEALFGPFDTTEEAWNFLNQFQNIIEELEKNPEQYPQAIKEKYLGFTSS
>NC_014534.1|WP_013334985.1|285875_286358_-|hypothetical-protein
MLLILHNKLGLIERLLLGFNYNPLSIKEDQLDLVAVAETNILDEAWNWTQNCWPQAENAVARLAPQRSTDVGDIIQTESGESYLVDSSGFTLLEKQPIYAHVSQVVQYPTGEQGELFPTLSVKDWASLPLIETQRFSHSFYYLEIRNNFGQTLRLLRIYK
>NC_014534.1|WP_013334984.1|283974_285822_-|hypothetical-protein
MDEKIQFLAQTKLNQLKDQLETLEKSPIEGDSKQIKKYNQDLNYCRQKIANLESFLSFAVGQKVTKDGQIGEIGALVLSPGGMPEAWVSWTIGSAPIPEQPAKLQIVDEARELLLNSNSENDKQDLLSLPALNNGNTIPEEIPTPNVESSPEELEPKESSINEVRHDRTLVINEESEPSNNQLEPEQTSIPDEIFAIGEKSEALITERSDNPVIQDFNPSDIIIDEEFKALIPSLSLEEKEQLEANILAEGIRDPLVLWKDKNILLDGHNRSPIAQKYNLPFKTVAIELEDRDAARLWLINNQLGRRNLSPEQISYLRGQRYNLEKGQGAKLEDLKASQIDRTNRGSQNDTGSKNHSNDQNNDLEEPSGHFDHLINQEPSGHFDHLINQESSGHFDHLMTQQPSGQSDHLVKTAERLANVYNVGEKTIRRDAQFATAVDLIGEVLGQEIKQDILSRQIRLNKKAAIDLAQIASVDPQRAKEVLESWTSGQKPEIAKHLRLTPGCLVQVNSPDHRDLHERTVRVACVTAKRVQVWHRKIDTTMEMIKYNLDLDQVEFVPMSDKPHVQALNDRLEKLRQYNLDPFERDFLALFDRCVALTPAEEEYLSFVERRYLSL
>NC_014534.1|WP_013334983.1|283416_283899_-|hypothetical-protein
MTAPTLTYSELSCFSGSDMVYRHIFRMAYTEGVRSIAQKGGAYWLLDAIGSYQPKNPKEPYLADFQLWILSILNAPHQPPEGIKYPFIVPSNSHYKAVLTCWHDTPETPSQEQSWKQSTRFILAQDIYSTNFPLAEISLYVCPTVVGDEELPLLMLPGEY
>NC_014534.1|WP_013334982.1|282816_283311_-|hypothetical-protein
MIEQSKSNNGRFDSLLNPVVSILQGLRELFVLVREVKNLLAQQNELLKQNNELLQNLLDKENSSNQVEVNPNFQAGLSDYPTFDWAKIGATVISTDSDGPTVVEYEGLAFKRRRSSIDDVKGAAIWFSCSQKDNKDQLTYLRLITFKEQLKIRSLHGEIKEHLS
>NC_014534.1|WP_013334981.1|282511_282700_-|hypothetical-protein
MLTVLSPTSINSERDYLVVLSSSSSQRRVSVTWDEGVEIDWVDWLEAYNQFESEKFELVEII
>NC_014534.1|WP_013334980.1|282019_282418_-|hypothetical-protein
MLILIYGRRQEISGLPNFHVLIVESEGQQFKWDYTNLIELENNLQNHLKQAQENWGLALPLTHYINKDQYPEYQDIVGRLDNYDMYCQWIAPSNWVCGFKDGDSVVASSFPSLTSLDRSICRLVDDEVIEPE
>NC_014534.1|WP_013334990.1|290778_291414_-|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MSSIAVYIDVPFASFRQSHSREYGKTYPVPPPATVYGMLLSLVGEWDVYLHCGVQLAMAMISQPQISKVLRRIRRFKVKNFSDDRNTNPEYQEVLSNIKFIVWVASKNEQAQPTLRERIEQALIYPESVKRVGCLYLGESNDLVNKIKLISNDYCFEERWWLMQDEDGLIILPYWVDHVGSKNTRWLRYGLKKISVEFPPESCWTTIQAIR
>NC_014534.1|WP_013334991.1|291418_292324_-|DevR-family-CRISPR-associated-autoregulator
MFYLFGTVITHYGPASLNHEKARGNVSPLQKTYWDGHIHSLVSGDAIRWGLRYTLQKEGYPINRRWNEDEFTNDLVNENFDPVEFVDDDLFGYMYAEAAKEDIQEEEPSSTGKERRNQTKGSIVQRLGALGVNRGVSLIPYTGALTFNAKSGKIKDRTALHFLEYHNTRYQYTFALDPNHLKVKERILAFIDALMNIRKVGGNNNVFCYKFTPESFVLCWTQRETPGIFYCFEEGDLIPKMKSEVLEDIEVGDIKASELWIGGRVAKGLKIKNAHIFRGKEQAIEDLKKVIVKDLELSYPY
>NC_014534.1|WP_041934265.1|292325_293582_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MTGLNPPSIELINQIHLHFSIGATFLRHCKFCKYGKQTVQEIIIEGKQRKLTYKPIKWYAHQTFAKQLCQAGQLLTDYISIISWLYLGATVRHAMLDKYNKIQEKPEFALVLLFVPVVCQYFIFHPYYEKTDNNNPEKYLIVIPEILDLEEAAYQRWQSGNLAYKNYHVSSLGEAALITYSWHEVETQRSCERTCQVLLYEKFNKDSHQRSLIETRDITINLNILNTYFLIKQFFQENQFDSYGKNRWIKVNFIRGIIADNLVKGVPWWSDFWKILNQEDIDGELAQQLIDNKEGLIAMIEQDKEMEDYKLFVQAFHEALRRNYAKIQKRTQEGERARFDREYERIRGELNRCYDEHSFSDFLADFLARAGFLSTLYDEWDSVLPFITESVPWQKARNIALFALATYKPVSKNQLEGE
>NC_014534.1|WP_071881455.1|293683_294268_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MEAISIHPIAGIPQPLNQLRLTNRSRLRIRLPIDQIPLVYPLAGQTITIDWGIERVSHQAKFQLGIPYPTALQPASTLYSRLVLIHRAETPEAVLEVAQRQLNRKGIKGTIELPTRANGEVQCRLLTIKKKHQLFRLRGFGMKVTKLSEKDSIKLQQSGIGGKHKMMCGVFVPTWRETTEKDENSNVLVIYSGR
>NC_014534.1|WP_049802809.1|294258_296586_+|DDE-type-integrase/transposase/recombinase
MLPSHELLDNPIFQRNFVWLEDYLIKCPNVEAQVTDAVLAMVKANPGIYLSELQQKIEIASIDDFHVLILTDKIYVDLFAIPLSCPEQVQVFLSATEAFTHSQLTTIVPSNWETFNSPLNVAIGTQISWDGQPWTIVNLGNNYVGLQGENNTFQHLPNSVFSTLVHQEKIVGLSSPNFSSLNPKIEEIFSYTSQADLQEAHRRYQQIEAFLKGTASTPTNRTQRRWLASYRKAEQLYGRGFIGLIPQHRHKGNSLSKMDKDVHQLMEKHIQEEYETHKQPSIRHAFQAFKELCAHTGLRPPSLETYRRSIRNRPVVEQVKKRQGSRAAYQEETFYEFLDRNTPIHGERPFEIAHIDHTLADVQLLSLIMLNLGMEMNEGEHQANLGKAWVTLLIDAYSRRILAAYMTFDSPSYRSNMMVLRICVQRFGRLPQILVVDGGRDFQSGNFEMLLAYSHVTKKERANTRDGSVIESFFGVADREFWHNLKGNTQIMKKVRQVTKSVNPKYHAVWTLDKLYRYFCEYCYEIYDTCPHPTLRMTPREAFEIGLARGGLRGHLLIPYEEFKLLSLPAPTDNDGMRRITPKGIKINYLYYGHPSFERVRNTRVAVKYEPFDVTIAYAYIKGEWVQCRSGYIRELQGRSVKELITASDELKKLNQLQNQQFSDITGKNLAQFFTRIEREEAILTPSWREAKKAVQAQHLRDEELKEVLNEIEGKPSTKETSNDSSEIDLFTFENREYIALSSSISPPSPIQQTQVDEDDDNDEFEELFEPLEEW
>NC_014534.1|WP_013334992.1|296585_297785_+|ATP-binding-protein
MALQGFPPELLNQSPQKRLDFFKSPDITFMHKILHKTYNQLYRKVCKPAGASTILLIGPSGVGKSTLMDLLKKRILEESLPQMELEPAWIPIICVEADAPGKGTFRWKKFYQQVLLEVDEPGIKYKIDYNKINYEEEGIRRGNNGRLIIGARATEDSLKISMKQALKYRHPYTLAIDEFQHIGIRANEDLLKAHMDCLKSVVNGTKIPLTGFGTYELLEFLELSPQLSRRTLKIHFHRYRWENDDECKEFKRVLYNLIHRMPFPNQPTITKQIWEFCFERSIGNIGTLIDWLTDAYDLALANDAPSLSFDYLKETAKSRLDCEQMIEEAIEGEARLEETEDSTNRLKVLLGMKSASKPSKSNANSTDPNSTAQKTKKDVKNKPFKRKPVRDQVGGQDET
>NC_014534.1|WP_013334993.1|297774_298218_+|hypothetical-protein
MKPDSYEPLEWYDLKLLILPKFLYLIFLTINFSSSVFASPENLAKAQPHQQKRISPRSCDLNQIENFLNQHLEQSPDLISPLTIIAKNLKVDKKFISRYFRDLCQKIVAKRLSYKKDCYLDSLKQCCNEVEQVTKMLFKQGEYPTED
>NC_014534.1|WP_013334994.1|298776_299544_-|MGMT-family-protein
MCHSRVSYLFAKPKSGQPTLPYKKLTLETGVGIVGDAHAAQGSPRQILLVGANTLQDFKLNPGELRENILIDGEIEQFSSGQVLQIGEALIRLTFLCEPCKNLEQVQLGLTKRIKNRRGMLGIVVGGGEINIGDQIVLTSHRFSVFPDNPKERFQEFVKRIPFGKVVTTSDLLLALGLTQAYYRAIGNYIKQTLTNVPSHRLVKADGTLLTKYILNQAELLKAEGVKLNSSLVVESHYYWDKNQFHHQQDIYECH
>NC_014534.1|WP_013334995.1|299594_300761_-|ParB/RepB/Spo0J-family-partition-protein
MGRRIGDNLINQQFSQVGVYQELDKANKRVEELTVEIDQLRASGNKQAEEKKVKELRSSLTEQTIIEIKIENLQPNPQQPRQTFSEENLLVLARSLEQDGQQQPILVFQIDATTFLIFDGERRYRAAQKINWQTLQGIILPLLHSTCVSNPVTFRRQAFLANYHRENLNPLDMAEMLVAEIATTEAIEPAEVPNLLNAAITRLSSESQLELLTTLVTASAQQQEKALSDLERLETIKEKEKAVLKVILSLQLNPTSVKTNIFPSLNLFDDLKIAIRQKGLGGHQARVLQQLSAKKLGKTASEALLIRQMVTQEVIEKKLSVAATRNRVTEELTQKLPLEEEKIGKTVQSAIAKIEKMKVEAMKKAELEALEAALKHKLKEIKLSLKSS
>NC_014534.1|WP_013334996.1|300745_301567_-|ParA-family-protein
MQQLRLAILSNAGGSGKTTLATHLTYLLSIAKYSVATIDLDPQGSINVFCGLPRPDESQTIAAVLSNDKFSGDWPIVPLWNNKGVKSAYACQGEKILEKTSNELVLHQRGAYLLGDRLDDFPLKQDVIIFDCPATLGPLPTIAITAATHILVPVQVEPKSTAGASKLLEWLYEKFGILRLNPRPKILGFVPNQYDRKIAIHRTLLEQLSPMLSELGIHCFNPIRSSSEFKNACALGLPLQLYRPSHPACKDFNPIIKALKNELNQGEKLWAAG

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Crispr_ID: NC_014534_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014534_8

389583-389685

TypeV-U5

Consensus_repeat	Method
AGGGTTTTTGCTCTCTAAATGATTGAAAG	CRISPRCasFinder

1 spacers

c2c5_V-U5

The CRISPR arrays of NC_014534_8

>merge|NC_014534|8|389583-389685|CRISPRCasFinder
AGGGTTTTTGCTCTCTAAATGATTGAAAGCTTAAAGGAATAGTAAGAAGCCAAGAACGAAGTTCTTGTTTCATAAGGGTTTTTGCTCTCTAATTGATTGAAAG

>NC_014534|8|8|389583-389685|CRISPRCasFinder
AGGGTTTTTGCTCTCTAAATGATTGAAAG	CTTAAAGGAATAGTAAGAAGCCAAGAACGAAGTTCTTGTTTCATA
AGGGTTTTTGCTCTCTAATTGATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014534.1\|WP_013335051.1\|380061_380316_-\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_041934279.1\|386928_387600_+\|hypothetical-protein	c2c5_V-U5	-	unknown
NC_014534.1\|WP_049802823.1\|381908_383180_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013335061.1\|406731_407289_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_014534.1\|WP_013335060.1\|405138_406197_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|211342
NC_014534.1\|WP_013335057.1\|395901_400923_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214671
NC_014534.1\|WP_013335056.1\|390511_393532_-\|primase	unknown	unknown	gnl\|CDD\|225913
NC_014534.1\|WP_157872044.1\|408103_409507_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133045
NC_014534.1\|WP_013335065.1\|410642_411434_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226953
NC_014534.1\|WP_013335054.1\|385395_386313_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_014534.1\|WP_013335052.1\|380610_381585_+\|hypothetical-protein	unknown	unknown	unknown
NC_014534.1\|WP_013335055.1\|386319_386811_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_014534.1\|WP_157872054.1\|409836_410637_-\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|226218
NC_014534.1\|WP_157872042.1\|404392_404992_-\|sulfotransferase-family-protein	unknown	unknown	unknown
NC_014534.1\|WP_013335049.1\|377755_377971_+\|cyanobactin-biosynthesis-system-PatB/AcyB/McaB-family-protein	unknown	unknown	gnl\|CDD\|211943
NC_014534.1\|WP_013335053.1\|383400_385389_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378147
NC_014534.1\|WP_157872041.1\|387487_388975_+\|hypothetical-protein	c2c5_V-U5	-	gnl\|CDD\|273793
NC_014534.1\|WP_013335050.1\|378136_378337_+\|cyanobactin-biosynthesis-PatC/TenC/TruC-family-protein	unknown	unknown	gnl\|CDD\|275240
NC_014534.1\|WP_013335058.1\|401717_402866_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_014534.1\|WP_157872043.1\|407297_407984_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997

Protein	Function_ID	Function_description	E-value
NC_014534.1\|WP_013335061.1\|406731_407289_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	6.3891e-36
NC_014534.1\|WP_013335060.1\|405138_406197_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|211342	cd02577, PSTD1, Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.	1.35208e-39
NC_014534.1\|WP_013335057.1\|395901_400923_+\|hypothetical-protein	gnl\|CDD\|214671	smart00457, MACPF, membrane-attack complex / perforin.	0.000333821
NC_014534.1\|WP_013335056.1\|390511_393532_-\|primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	1.72988e-26
NC_014534.1\|WP_157872044.1\|408103_409507_-\|hypothetical-protein	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	2.62658e-09
NC_014534.1\|WP_013335065.1\|410642_411434_-\|ABC-transporter-permease	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.51948e-22
NC_014534.1\|WP_013335054.1\|385395_386313_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	8.39857e-20
NC_014534.1\|WP_013335055.1\|386319_386811_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.29706e-08
NC_014534.1\|WP_157872054.1\|409836_410637_-\|ABC-2-family-transporter-protein	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	7.12604e-38
NC_014534.1\|WP_013335058.1\|401717_402866_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.02204e-05
NC_014534.1\|WP_013335053.1\|383400_385389_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	2.68636e-09
NC_014534.1\|WP_013335050.1\|378136_378337_+\|cyanobactin-biosynthesis-PatC/TenC/TruC-family-protein	gnl\|CDD\|275240	TIGR04447, hypothetical_protein, cyanobactin cluster PatC/TenC/TruC protein. Members of this family usually are small proteins (PatC, TenC, TruC) of unknown function in cyanobactin (prenylated cyclic peptide) biosynthesis clusters, where a different small protein is a known cyanobactin precursor (patellamide, anacyclamide, piricyclamide, etc). They may instead be the C-terminal domain of a longer protein that otherwise consists mostly of lectin-like or VWF type A domains, in similar context. Similar to the cyanobactin precursors, members of this family have two very strongly conserved regions separated by a hypervariable region, suggesting these proteins may undergo a similar maturation.	5.82143e-14
NC_014534.1\|WP_157872041.1\|387487_388975_+\|hypothetical-protein	gnl\|CDD\|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	0.00297158
NC_014534.1\|WP_013335049.1\|377755_377971_+\|cyanobactin-biosynthesis-system-PatB/AcyB/McaB-family-protein	gnl\|CDD\|211943	TIGR04220, hypothetical_protein_L8106_29040, cyanobactin biosynthesis protein, PatB/AcyB/McaB family. Members of this protein family are small (~ 80 amino acids) and occur in biosynthesis clusters for cyanobactins, a type of ribosomal natural product, thiazole/oxazole-modified microcin (TOMM). The function of this protein family is unknown, and the recognized cyanobactin precursors (e.g. microcyclamides and patellamides) are encoded by a different protein (see TIGR03678). In this protein family, however, a core region of about 62 amino acids (modeled) is followed by a hypervariable region of 5 to 23 amino acids, with hallmarks of possible cyclodehydratase modification sites. The hallmarks include Cys residues flanked by Gly, and variable length Ser-rich tripeptide repeats. Further, members of this family were shown dispensible for patellamide biosynthesis, and two may occur in a cluster. Therefore, this family may represent a precursor of another type of ribosomal natural product.	8.42955e-34
NC_014534.1\|WP_157872043.1\|407297_407984_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	0.00719603

>NC_014534.1|WP_157872041.1|387487_388975_+|hypothetical-protein
MLLPTSSKTAIKFEGEPEDKEAYLLRRTQKEIQIQRLEAQIHSCAPHPRLNDDSLWLDALNQSLTGITEVKDLQQIQRQLLQKFPHLPYPVFYNTNTDLEWSINHQGRIRVSFNGLKKKGITLEIACDERQLPYFQRILSDYQCFKRKDLPVPVPGGLMLLRSAQLIWKPIEGKGQPWNTHHLYLHCAINNQLWSKTGMANIQQELIQETQKQLNKCFAKEEQNPLTNNQKKNILRLESSLQRLKTFDIAYLNPFQSHSYQGNPHIIVGVAIGLKTPITIAIVDLQTQATLGFRSPKQLLKRRRQILVAKAKTEDKIRFSPRKKREITDYELFQDYLHKKHSNKHERHKAQKKFADTQFGEANAGLYFNRLFAQAIVEVAHSYQASVIVLPDLTNIREAIESEVRARAELKYPGNKTQQQRYAKDFRVTVNQWNYNQLGQCINYAAKKAGLKIAILKQTIKGSSQQKARQIALTYWEKQQQTQTPFNVQTPNNLV
>NC_014534.1|WP_041934279.1|386928_387600_+|hypothetical-protein
MSSLSVIRARLLASEEKLSYLWQLMAQPYSQLIQLLLDYIANHPDFPTWLDKFRLPDTLIKEFITTHQTKYLCQELPGRFRQSAVTLVKNIYKSWFAHKKSKLLSLQGKKRFLSMLKSDEQLLLESGYDLYTLTSHAQNLLQQVQLELEELWQQEGIKPEDEQSIFGKITNKLYELHDKTQSIPKRCVIAYLIKNGNQIRGRTRRQRSLPTTSHPKRNPNSTP
>NC_014534.1|WP_013335055.1|386319_386811_+|TniQ-family-protein
MVEFEAGFQPPWYLEPLEGESISHYFGRYCRHESVSSPSQLSKAAGIGPVLGRWEKFRFIPYPTHKELEAIGGLIGLSVAQLKAMLPQESIKLLPIRLCALCYGEKPYHRMEWQYQSRLNCEVHGVKLLTKCPSCRQSFAIPSQWVEGRCQRCGMGFKRMGKQ
>NC_014534.1|WP_013335054.1|385395_386313_+|ATP-binding-protein
MTKNNLAQKKSVPSKSPKVNDLVHSCEELQRRTPAQQTEIEPIGKADTYCYLDRDDELFTWLNDQRDLKLCGYIVATKGSGLPKSCEYYRLAHVKRRGSLFEIPATVFYLEMLQKGKATDLYQAILSEFGHPLPTLGKLNNLRSRTWDNLKRYGVKILIVGKADYLKLEAFNELIDLYEHLRISVVLAGTHYLEDILGRNHSAYVRVSNSFLEWYEFPSLTSEDVVTVVEDWEKKFLTPKNRLNLTQSPEVVETLKEKSGGLIESLYDLLRQIAMFSTDDPYFELTPSNIMAYLSHRKPPTQKLG
>NC_014534.1|WP_013335053.1|383400_385389_+|DDE-type-integrase/transposase/recombinase
MTLSGINFNEIELDADEEDLKALENPKIPQKSLKLINTELPPKVEQKLDALNAIGQASNKKERAEAIKQAAISLGKSARTIRRMLAKIAHEGVATLAVGRQDKGQYRISKQWRDFIIKLYKWGQKSGSKSNISQLYVAITSLASQGEKLRMDVQRKDGIAKYLKPYPEVLEDLIALKYPSHVTVYKVINDELQRKKKFKARHPGADIDHQIVQTIDENLHITHSNQIWQADHTQLDVFIVENLKNKDSLLKPEIIRDRKGEPIRPYLTVIMDSYSGCIMGYYLGFVAADSHRVALALRNAILPKPVQEKYGLINEWVEHGIPEYLVTDRAREFKSDHMKLVSTQLDFKWKLRAFPSAGGLVETIFNQTNNEVLKNLPGYTGSKVDERPKNAENHACMTFEELEKELVQYFVDHYNQHQYPKMKIEPQFEVLTRSKRWQSGLISGATIIDERTLDICLLKQAHRRVQKLGTIQFENLIYIGDCLRDFIGEEISLRYDPRNIVTLLAYTSSNQEEPSEFIGVIKARHFEHEQMTFDELRWIVQKLKRQWKNADNISILNERYNHLNFIEQKRVKKRQKRKKAQQKRDETTNESKIVEIFPQNALEPDDKTVIEEATEANTMGQKRRLSKIHQSSLPESHPRVKRRRSGIAVHVQDWNEYKKNNW
>NC_014534.1|WP_049802823.1|381908_383180_+|hypothetical-protein
MPLTRQVRHYQKSRDNWKENAALKQRTLRSYLQLTRSLKKSRDNWKLRAKQAEARVKELEKKLSSIDPQNASESASHSSKAIDDETIPGHHYSLTTVSVVVRQIIKVGNSYRGVAKTMELVSSHSSFGTPHYSSIKTWIERIGLYELQRPKEKRSDWLFIADLTLELGKSKALVIYGIPNRYWQRYRLRHPNSSLPTDGQILALEVTDEATGDWIYGVLQSVSQQVGTPLQIISDRASNLYKGIQLFRAYHPGVIYTYDVTHAMANLLKKQLIFDEDFQNFLADCHQCKLQLQQTELAFAAPPPQRTQCRYFNLERLVNWASHILKSDLTLFSQLLPNLPLYKLQARLEDKLGWLKTYLEPIKIWKHLLFLTRTLEKQLKFFGLNPGSISSFSDRLSHRKIPDFLQPFQQRIFSYLEEQVYFK
>NC_014534.1|WP_013335052.1|380610_381585_+|hypothetical-protein
MSDLLFASNSIPVVTDDYLTSEEEQELLQLEGCIERSFYQAGQALKAIRDKRLYRFLYATFEDYCRERFGFARRHSYQLIDAAVVMDNLLAIEAQCESGAQTENISDNLCANGAQTETIISGETPVAKNITPRQILPTSERQVRPLTSLNPSQQREAWAKAVHLAKGKVPSNRIVTRVAEQIRSSTAPAQDSSHAYHLKLNPSGLVKIHDSTNPMIDQCLGRIACVNSKTVEVWVRDVEQMVINKYNLKHNQVQPLSFEQEPSIKEIVERLTQLRHLPLDPFEIEILNLLDRVVVLTPVEEQYLALIGQNHQGVKAISPLEELI
>NC_014534.1|WP_013335051.1|380061_380316_-|hypothetical-protein
MTYTGRGSHPNSLANLKHEGRPLAQDEPKKNRTITVTDLGWNGARALALSLGLSSFSELVEKLGRKEILLVIPSVESATSLDES
>NC_014534.1|WP_013335050.1|378136_378337_+|cyanobactin-biosynthesis-PatC/TenC/TruC-family-protein
MAKKTQSQQNPEQNPSKPTEKISQEVKTHLLATGLEDYVFWWQEMLKTQKNAEKEQKPFRRGRIWS
>NC_014534.1|WP_013335049.1|377755_377971_+|cyanobactin-biosynthesis-system-PatB/AcyB/McaB-family-protein
MRLPKLAPPVKRPDIIYPHRSVDVIHGRVQDLVGIRMDLLHGANYNDPAAFNYSACSQSPPPFGCGGWEGY
>NC_014534.1|WP_013335056.1|390511_393532_-|primase
MQVTETDRLTDVEKWPEVTEQEPCPLCSKEDWCTRAPSKEAVLCHRVKPPFAPPEWKHIKNAKDGDPIYALQGTQKGRNSNKQLKKASKPVPFPIPDGEIELALLPEAVTSPEKEKVTKSWGYDIIIEYPYSPTQYVKRNEHYDSEGNRIKIKKKTKITLPYHQNSDGEWINAKGQVGWPAYRIEEAIAFGSNKWVLGVEGESCVEIARSLMLVANTMQGGSWSEVDLGILLTQLKNNNVTGLVYWPDNDSDGQRKAEKLLVASGRVKFPVLILNPLEIWAEIPQTGDIVDWVKWGLAQGMSGDEFIKRLELAIHKAVETRHNQPSEEEDNSNEQPSTGLPKQSRLVAQIQELYNDKFKYNDQANTWLEYQENSLLHDGSWVPVSNLRIQTQIYNILQARGYEFNSSYLNGVEDLLKKALYIKEWPSTKDLVGFSDCVYELSTGKTREHSPHNYLTWVLPRPFNPLSRSWTTIDEWLTEATQNNQTHKQILICYAAAVLRQRADLQKFLHLIGTGGSGKSSFMNLLVALVGQQNTISLDFPSLNEKDAIAEAFGKALAIFPDQDSAGKNLSNFKKMTGQDLLRGRRLYKDGFSFKFGGMCVLSSNHPIFHAGSGRWLTRRVLMVPFNLAVADGNVRNLEKEFEPELSAFTSYLLSIPTEEIEATLKGLNKKQVISSTLWESQKRSDGLASWVNDEIIFDCTAKTQIGSNAREWNDEDYNPLKSTLFGSYCHHIRRSGRQPLTKDNFSANLIELLKGTLKKDVDKRKTNQGRFLMGVRLRTAQDYEIPCLDELLEKMESDDGGDDPDDGGGDDPKPLPVEESDGSDDSSILFEEKENCNNDPPLQDSDKIVEEISSTNASSTDVVNDDHLSQEVVIPDLTPTEQGVEVVTGAVTPLVTGAVTLDELKSEIEYHRKRLCWSKDHFQQIVESKYQKSSDECFNCHSILNDCLTFLSAIKFKPGDRVIDDGGWKGTIKSIHPNGKKAQVYLDLMESVHPVDLDNLKPMEA
>NC_014534.1|WP_013335057.1|395901_400923_+|hypothetical-protein
MSNPFNNIHVGLSANLIKGLNSDWNPASGKLNILYSPSQQCCNCTSESETVQDRGQWQYPVITLHESVQSLLTELIPYEVVNPSSECHVPTLPAGALVMGGVSNKEAVKQLSETIGVDLSNPDYRYALVKLTRKDGSITHASVKQDILIHYRPKNLDPNYGITEDFNHAMIKLRHSGKSMEQDYGDAIRQKQVTSYLDHFKTWGTHFVSQVDVGDTIMQVFAYPSAKFKRVKKAYSNPSGENSLEGSQSVNFVYYTTDLNKGEFGFVKEYGQILNLSNSSIFRQTFKEDKWLETTWSKTNSVFALFSNEAKLGLRDLQEQFQDKVPIRVQLSTMTLLVEFKRALIWQRVISAAFVQKYQSSIEANFKVYDTRDFVAMLPEDQPGLLSTIGTPRINVYKTRIDIGDMQFVAPEEVNDFTLFANVLSSSASGTVKLPGNNVRLFGQVLDMRPSNSGQPKTIMLNDAAYDGFEVACSEFLGALAVRNQANTKYNVIVDGLKYGLSGEGRDAEPIVVSDVRQVPPVTALPSLVDSLQFSMTFAEAVVSNQAACPNYDIQILVRNYLQWIAKFIPAVTENQELLILRVRALDLAHYATDPSYGSFVPILPSTEYEKLVEKILNFSLAIQQQINEYQQQIEARRQEELVINVANTLNENIIESGKLLSNLIAANAKQQKDMADNYDSLITQQKAEAEEQNSQVAKIEAQLFKQQAVVNTAVQTYKTAVQQWETIEAIKFGLDVATNVFSLGTSILIPSSSISAVKDLGKMAQLIQKTLNVLNASWKLYSGIQAEVDKLKDAQKTFDGLDGAQFGSPSSLSWDEMSINFDLIIATGPSDSTVNSAKAELQAAFKTLILRGKALTTAKSALHQIQRDIYTNQQQKEINDRQAKRLDDLKSALRPAKIEDLDKSKIDLIGLTGNLVFIQNQMLTILAKAFLMQDQALQYANLQPATAITSFSLLKFYGALVTQQQTTIEAKSKLGQYQSSTTNQISYVIDGVSPTDLINDNRFSFCVHLDAREFYQYVNARVVSVVAEIDGIQSTDSGKYLVQLTYQGTPFNDRDTKRKALTFRTPWRERVYEYNIETGTRNFSDGGVSWSEGVSPVTPFSSWQIALPNTETNKGITFKNSDLRIRLSFVLKARIVDKPMDKPESKLAKNKRQKRSASASFSTISAQLSVPDLVSQLNAQGSCTNGWDVVFNMSLEQINKSLEQQYEELKNSTTYKNIIQIQTKKADEWVEGRWLINKFGIEYGYPLLSFSSNNPTNAKLTMEILSGNIQKCMKDKNEDEKCKSPTAINGETLTANIKIGMIQGTVQTGSGNHNVLKVQLDMQTGTFDISNIDLSDDEKIAFNLTLKAYFVNNPVLFLINQLDLTQVPTLDNLKPKSFYFKPLKTPSGKEMLQLFIQTGNRNLLDYTQTFLNNISEPIPLGAQCTLMVKSGLFFNSLLPESLNKKNWKIEGIDPVNDKKAWTAKFTQADVSGNVDLTSLNSQISGGYNSSTWTDTTTYYIPGGNTVTWSLAGMTIEATNLGKMKLSGNQKNSLNYIQKNCRTTYSLFDSPTRCTESKMSTDVSVGVLANLPLGVGGSGREQTVYINIDNQAVTITGHMSGGGPSSSDDLQAQVNQKINSQVPSQIVSQLNVSFQPISVFALKNLLFPSNNYINFSAAYVPGDLLIVGTFSNV
>NC_014534.1|WP_013335058.1|401717_402866_-|IS4-family-transposase
MIQLPQLYTKHLKKHLNSIQFLILSILINLIQEHRWIKLENLAFQFPSPIKEKSRIKKIQRFLPLKQLNIETLWFPIILEWIENQYETQECLFLVIDRSQWRSINLLMVSLVYNKRAIPLYFKLLPKKGNSNLQAQKEVLNPVISLLENYKLVVLGDREFCNVDLARWLGEMKTPFSLRLKKNEYVELEEHIWFQLKDLGLTPGSSLYYQGVKVTLSKGFGEVNLAAKWSRNYRGKSQKEPWYILTNLRSLSAATEAYSQRMGIEEMFRDFKLGGYNIEGTQVTGERLIALILLGTLAYSMATFQGNLILRKGVAQYVSRPSESKRRYRRNSGFSIGLKANSWLNSLSFFAHEVEQLIAFVPQKRAYYSRGLRAATIIQSAF
>NC_014534.1|WP_157872042.1|404392_404992_-|sulfotransferase-family-protein
MFVGSDSPDLDSPSGNQEDALARLVHNRLMGRNGLGKICNWDNPRYVLGSNPDAVQHIKAYINFRIRNHTGSWGLKDPRLSFLIEPWHMATQAMPVYWIHIYRENKDAMVRSLIAMLPAKLRYCKDDQGLYRLAANWAETYVLAIELGFARIGIQPYQLTYEELLTLEGQARLSKQFKFQVPIRCIRPDLNRKGDRTFC
>NC_014534.1|WP_013335060.1|405138_406197_-|tRNA-pseudouridine(13)-synthase-TruD
MKYTKSIFKVKHTPKDFLVKEVSLFPKLCDREDATYTYIWVEKVGYTTFEVQRIICQYFDLNPKDVSAQGLKDEDGITLQTISVRKHLNQNDVLRFNNQHINRPGICTIKEILGYGKKTVTPKALHGNTFTVTVRSVAVELADKIAETFHLNNDFEFINYYDLQRFGLPGGPYNAHLIGELIIQGNWKSALAEFCCTKNITPELEANLPTNQSEENCRHFFLNQVGYKLVSFFISSYNSNIWNQKVSNFLKELSYLNTKDLPELELGKLQIPTTNITQIPLYLSIDAFQLKEEGNLVTSKKNRLLVVPTKIYCQEPESDEFHPGKVKLSMSFFLPTGSYATMLLKQIECRFR
>NC_014534.1|WP_013335061.1|406731_407289_-|histidine-phosphatase-family-protein
MIVIVRHGQDEDNAKGILNGHRDLGLTEAGKAQIKSTATQLLSVHPEVIITSPLKRAYFSAKIISEYLSCKHLKVCPELIERDFGCLTGKKIADIPYYCKQILQFDGVNYFLDAEGSESFPLLLTRAKRVLENLKTTYLSRNIIVVTHGDLAKMICAAHYNWSWKQGLQTHNIRNGGFIYLEDRS
>NC_014534.1|WP_157872043.1|407297_407984_-|glycosyltransferase-family-2-protein
MKSVCNQIDDRFRVLVVCNEKPAVTFQHSNIEYLEVELPPPSSLQTASIGMPALRIDRGCKYLLGLQHAKSYPCSHIMFFDADDYISNRLVGFVANNSQENGWFFNQGYLYDRQKDSLGLLKEFYLYCGTSHIIRSDLYQIPETLPNKPSQKEILTEIDEYYLLYILGSHRWLKKHFAEQGNDLNPLPFPGAIYHVGHGENLYARSGMLETQPCELNETIRQEFYLFK
>NC_014534.1|WP_157872044.1|408103_409507_-|hypothetical-protein
MVEQQQSIQELEANENHVPCIKIILFLPMLGEQENVAPLLAAINALSFSVDRVLVVPITTEREEVTQLQKEKAVEALVKDLKAGHRGNVFLWKHSSNFATHRLQSWAKDFLTKPQVVENTIKQFIKRPSTKDIIEQVIKEIDFRFPILHIHYPNIHGNKASQMNYALNVLSEQGRITTPDSTYIGVYDADSRPSRLSLIALSIAANKERSAAFQQYPVYLQDTDNLDLFMKNEAWLQTARSVCIEIPRQLQINAELTQGKRYGRTFTYCIGHGEFLRADWLLKAGFPESTPIDDLPTGIMLSLAEQKIVPLPFFDFCSVPNHIFDFIRQSATWFEGQSDYKHPYERAAIYFSSPAKFRHIRGLFEQAMANILWAATGPMRILVLLVTLLTGMWLIAGAIIGFFFLEAWTRWSLTRLLLDSHLYSDDLPRWPFALSSVTRPFLKSVGPCLYLLRKLVASETSGYKTER
>NC_014534.1|WP_157872054.1|409836_410637_-|ABC-2-family-transporter-protein
MDNLFLYGQYLKASLRSQMQYRTSFILLLIGNFLSTGLEFVAILILLTRFDHLQDWSLPEIAFFYSIVNIAFALCDTNSRGFELFPSFLKSGEFDRFLLRPRSTVLQLAAQEITLRRFGRLVQGLLVLFWSASVLNITWHLDKIFFLMATILSGACLFYGLIILQATLSFWSTESLEIMNIVTYGGVETAQYPLAIYQPWFRRFFTFVIPLACVSYYPVLNILDHQDPLGSKLIFQLISPLAGFLFLLICLQIWRLSLKYYRSTGS
>NC_014534.1|WP_013335065.1|410642_411434_-|ABC-transporter-permease
MSPYFAILSARIRTVLQYRTAAIFGTLTQLFWGLIRVMIFNALYSSNVIEQPMTHSETTDYVWLGQAMFSVSIFSIDNDLLTMMRVGTVCYELLKPVDLYSFWYFRAMASRLAQVLLRTLPIFALALLFFGLKPPASFGAGAAAILALLGALLLTSAISTLASIILLWTIAGQGINQFINILVLIFSGIIVPLPFFPDWFQSILNFLPFRDLVDVPLQLYVGHIPPYELGSAVLHQLAWIVTFVIFGRLIFAFGTRRLVIQGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014534_1	1.1\|125559\|34\|NC_014534\|CRISPRCasFinder	125559-125592	34	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	125559-125592	0	1.0
NC_014534_1	1.2\|125631\|35\|NC_014534\|CRISPRCasFinder	125631-125665	35	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	125631-125665	0	1.0
NC_014534_2	2.1\|161361\|60\|NC_014534\|CRISPRCasFinder	161361-161420	60	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	161361-161420	0	1.0
NC_014534_3	3.1\|161667\|60\|NC_014534\|CRISPRCasFinder	161667-161726	60	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	161667-161726	0	1.0
NC_014534_3	3.2\|161769\|60\|NC_014534\|CRISPRCasFinder	161769-161828	60	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	161769-161828	0	1.0
NC_014534_4	4.1\|236798\|33\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	236798-236830	33	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	236798-236830	0	1.0
NC_014534_4	4.2\|236866\|38\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	236866-236903	38	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	236866-236903	0	1.0
NC_014534_4	4.3\|236939\|38\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	236939-236976	38	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	236939-236976	0	1.0
NC_014534_4	4.4\|237012\|43\|NC_014534\|CRISPRCasFinder,CRT	237012-237054	43	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	237012-237054	0	1.0
NC_014534_5	5.1\|241905\|36\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	241905-241940	36	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	241905-241940	0	1.0
NC_014534_5	5.2\|241977\|41\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	241977-242017	41	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	241977-242017	0	1.0
NC_014534_5	5.3\|242054\|38\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	242054-242091	38	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	242054-242091	0	1.0
NC_014534_5	5.4\|242128\|38\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	242128-242165	38	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	242128-242165	0	1.0
NC_014534_5	5.5\|242202\|38\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	242202-242239	38	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	242202-242239	0	1.0
NC_014534_5	5.6\|242276\|38\|NC_014534\|PILER-CR,CRISPRCasFinder,CRT	242276-242313	38	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	242276-242313	0	1.0
NC_014534_6	6.1\|280403\|60\|NC_014534\|CRISPRCasFinder	280403-280462	60	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	280403-280462	0	1.0
NC_014534_7	7.1\|290446\|37\|NC_014534\|CRISPRCasFinder	290446-290482	37	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	290446-290482	0	1.0
NC_014534_7	7.2\|290518\|43\|NC_014534\|CRISPRCasFinder	290518-290560	43	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	290518-290560	0	1.0
NC_014534_7	7.3\|290596\|54\|NC_014534\|CRISPRCasFinder	290596-290649	54	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	290596-290649	0	1.0
NC_014534_8	8.1\|389612\|45\|NC_014534\|CRISPRCasFinder	389612-389656	45	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	389612-389656	0	1.0
NC_014534_1	1.1\|125559\|34\|NC_014534\|CRISPRCasFinder	125559-125592	34	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	81912-81945	8	0.765
NC_014534_1	1.1\|125559\|34\|NC_014534\|CRISPRCasFinder	125559-125592	34	MN693705	Marine virus AFVG_250M220, complete genome	33222-33255	10	0.706

1. spacer 1.1|125559|34|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

aggatgataaaggtaaaactaagtctattttagg	CRISPR spacer
aggatgataaaggtaaaactaagtctattttagg	Protospacer
**********************************

2. spacer 1.2|125631|35|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

tctcataatcgtccatttcttctaatttttttgtc	CRISPR spacer
tctcataatcgtccatttcttctaatttttttgtc	Protospacer
***********************************

3. spacer 2.1|161361|60|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

gctaaaactattgaaattaaccctcagtcagtaaatgcctacaaccagcgagggcttctt	CRISPR spacer
gctaaaactattgaaattaaccctcagtcagtaaatgcctacaaccagcgagggcttctt	Protospacer
************************************************************

4. spacer 3.1|161667|60|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

agcaaagtcattgaccttgatcctcagtgtacagaggcttatgaaaagcgaggcttactc	CRISPR spacer
agcaaagtcattgaccttgatcctcagtgtacagaggcttatgaaaagcgaggcttactc	Protospacer
************************************************************

5. spacer 3.2|161769|60|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

agcaaagctattgaacttaatccccaagatgatgcagaatatatagcaagaggctcattc	CRISPR spacer
agcaaagctattgaacttaatccccaagatgatgcagaatatatagcaagaggctcattc	Protospacer
************************************************************

6. spacer 4.1|236798|33|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

actgtttttacgtggcgctcagagtacgcagat	CRISPR spacer
actgtttttacgtggcgctcagagtacgcagat	Protospacer
*********************************

7. spacer 4.2|236866|38|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccattcctggcagtgtgtgaacatattcctgcaaa	CRISPR spacer
ttgccattcctggcagtgtgtgaacatattcctgcaaa	Protospacer
**************************************

8. spacer 4.3|236939|38|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

agcattaagtgcctctatttgagaggcttctagaaaca	CRISPR spacer
agcattaagtgcctctatttgagaggcttctagaaaca	Protospacer
**************************************

9. spacer 4.4|237012|43|NC_014534|CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

tgtgcagactgcatagccacatataacaccctattatttaatt	CRISPR spacer
tgtgcagactgcatagccacatataacaccctattatttaatt	Protospacer
*******************************************

10. spacer 5.1|241905|36|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

ttcatcttctggtatctcctctatccttagcatctg	CRISPR spacer
ttcatcttctggtatctcctctatccttagcatctg	Protospacer
************************************

11. spacer 5.2|241977|41|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

ttatagttccctccacttattaatgccatctctcctgtcaa	CRISPR spacer
ttatagttccctccacttattaatgccatctctcctgtcaa	Protospacer
*****************************************

12. spacer 5.3|242054|38|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

cctgacaagcaagcaacgatatctcctttgattgtttg	CRISPR spacer
cctgacaagcaagcaacgatatctcctttgattgtttg	Protospacer
**************************************

13. spacer 5.4|242128|38|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

tccacagaagaaggtaaagtcttcctgcgccctcttat	CRISPR spacer
tccacagaagaaggtaaagtcttcctgcgccctcttat	Protospacer
**************************************

14. spacer 5.5|242202|38|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

ccagtattcaaattggaggttctctagctccaaaataa	CRISPR spacer
ccagtattcaaattggaggttctctagctccaaaataa	Protospacer
**************************************

15. spacer 5.6|242276|38|NC_014534|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

tccttggcagaatcttggcggcttatagaatcaaaagt	CRISPR spacer
tccttggcagaatcttggcggcttatagaatcaaaagt	Protospacer
**************************************

16. spacer 6.1|280403|60|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

gaggtataactcctgacgtgcaatagggataataacatcattagcgattggctgaacctg	CRISPR spacer
gaggtataactcctgacgtgcaatagggataataacatcattagcgattggctgaacctg	Protospacer
************************************************************

17. spacer 7.1|290446|37|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

aatggaacgggcaaaatgtaaaatgtaaacgaatccc	CRISPR spacer
aatggaacgggcaaaatgtaaaatgtaaacgaatccc	Protospacer
*************************************

18. spacer 7.2|290518|43|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

tatgctttattttgctattgatagccaaggaactgttcagtat	CRISPR spacer
tatgctttattttgctattgatagccaaggaactgttcagtat	Protospacer
*******************************************

19. spacer 7.3|290596|54|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

gacgcggtttcagcaactgaggcgggttcagcaacgaatcaagcccgattttct	CRISPR spacer
gacgcggtttcagcaactgaggcgggttcagcaacgaatcaagcccgattttct	Protospacer
******************************************************

20. spacer 8.1|389612|45|NC_014534|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 0, identity: 1.0

cttaaaggaatagtaagaagccaagaacgaagttcttgtttcata	CRISPR spacer
cttaaaggaatagtaagaagccaagaacgaagttcttgtttcata	Protospacer
*********************************************

21. spacer 1.1|125559|34|NC_014534|CRISPRCasFinder matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 8, identity: 0.765

aggatgataaaggtaaaactaagtctattttagg	CRISPR spacer
aaacagataaaggtaaaattaattctattttaat	Protospacer
*..  *************.*** *********.

22. spacer 1.1|125559|34|NC_014534|CRISPRCasFinder matches to MN693705 (Marine virus AFVG_250M220, complete genome) position: , mismatch: 10, identity: 0.706

aggatgataaaggtaaaactaagtctattttagg	CRISPR spacer
tggatgataaaggaaatactaagtcagtaacatt	Protospacer
 ************ ** ******** .*  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7900 : 81182

Moraxella_phage(16.67%)

integrase,transposase

attL 58353:58367|attR 89136:89150

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013334776.1\|7900_8983_+\|transposase	transposase	NA	NA	NA	NA
WP_041934240.1\|9220_9577_+	hypothetical protein	NA	NA	NA	NA
WP_049802781.1\|9683_9893_+	hypothetical protein	NA	NA	NA	NA
WP_049802782.1\|9858_10608_+	hypothetical protein	NA	NA	NA	NA
WP_013334778.1\|11690_12161_-	hypothetical protein	A0A0R6PJC0	Moraxella_phage	4.8e-11	32.8
WP_013334779.1\|12234_12594_+	hypothetical protein	NA	NA	NA	NA
WP_013334780.1\|12609_13122_-	TniQ family protein	NA	NA	NA	NA
WP_041934291.1\|13118_13940_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_013334782.1\|13960_15646_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013334783.1\|15868_17401_+	hypothetical protein	NA	NA	NA	NA
WP_013334785.1\|18374_19820_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.1e-85	39.3
WP_013334786.1\|20400_23400_-	toprim domain-containing protein	A0A0C4K628	Synechococcus_phage	1.5e-78	36.7
WP_013334788.1\|24812_29456_+	VWD domain-containing protein	M1UGR9	Cyanophage	7.1e-06	37.8
WP_013334789.1\|29524_30139_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_013334790.1\|30405_31794_+\|transposase	transposase	NA	NA	NA	NA
WP_013334792.1\|34340_34697_-	hypothetical protein	NA	NA	NA	NA
WP_013334793.1\|34821_35166_+	hypothetical protein	NA	NA	NA	NA
WP_013334794.1\|35387_35699_-	hypothetical protein	NA	NA	NA	NA
WP_013334795.1\|35695_36187_-	hypothetical protein	NA	NA	NA	NA
WP_157872016.1\|36324_36573_-	hypothetical protein	NA	NA	NA	NA
WP_013334797.1\|36942_37815_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_013334798.1\|37950_38151_-	hypothetical protein	NA	NA	NA	NA
WP_013334799.1\|39204_62340_+	tandem-95 repeat protein	NA	NA	NA	NA
58353:58367	attL	NA	NA	NA	NA
WP_173362888.1\|62302_63084_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013334800.1\|63797_65519_-	endonuclease	A0A2P0VMP9	Tetraselmis_virus	1.3e-13	30.7
WP_013334801.1\|66255_67887_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_013334802.1\|67883_70301_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_013334803.1\|70356_71052_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_157872018.1\|71209_73330_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_157872019.1\|73529_73868_+	hypothetical protein	NA	NA	NA	NA
WP_013334806.1\|73884_75879_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_157872049.1\|75875_76118_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013334808.1\|76400_77165_+	hypothetical protein	NA	NA	NA	NA
WP_013334810.1\|77679_79320_+	hypothetical protein	NA	NA	NA	NA
WP_013334811.1\|79664_79892_+	hypothetical protein	NA	NA	NA	NA
WP_013334812.1\|80225_81182_+\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	7.6e-48	40.3
89136:89150	attR	NA	NA	NA	NA

DBSCAN-SWA_2

294258 : 358628

Enterobacteria_phage(28.57%)

transposase,integrase

attL 343480:343505|attR 356101:356126

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049802809.1\|294258_296586_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013334992.1\|296585_297785_+	ATP-binding protein	NA	NA	NA	NA
WP_013334993.1\|297774_298218_+	hypothetical protein	NA	NA	NA	NA
WP_013334994.1\|298776_299544_-	MGMT family protein	NA	NA	NA	NA
WP_013334995.1\|299594_300761_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_013334996.1\|300745_301567_-	ParA family protein	A0A240F4U1	Ochrobactrum_phage	1.9e-10	27.3
WP_013334997.1\|301856_303023_-	hypothetical protein	NA	NA	NA	NA
WP_013334999.1\|303546_304209_-	J domain-containing protein	NA	NA	NA	NA
WP_013335000.1\|304281_304695_-	hypothetical protein	NA	NA	NA	NA
WP_013335001.1\|305111_306284_+	hypothetical protein	NA	NA	NA	NA
WP_013335002.1\|306632_307634_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_013335003.1\|307861_308347_-	DUF29 domain-containing protein	NA	NA	NA	NA
WP_013335004.1\|308642_308885_+	hypothetical protein	NA	NA	NA	NA
WP_013335005.1\|308947_309628_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	6.7e-14	33.9
WP_041934268.1\|309955_310273_+	hypothetical protein	NA	NA	NA	NA
WP_049802813.1\|310382_310592_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_041934269.1\|311584_311812_+	HNH endonuclease	I6WB06	Burkholderia_virus	3.2e-05	45.6
WP_013335006.1\|311798_314405_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_013335007.1\|314437_314806_-	hypothetical protein	NA	NA	NA	NA
WP_013335008.1\|315193_315613_+	GFA family protein	NA	NA	NA	NA
WP_013335009.1\|315796_316195_-	hypothetical protein	NA	NA	NA	NA
WP_013335010.1\|316303_317665_-	hypothetical protein	NA	NA	NA	NA
WP_013335011.1\|318264_319071_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013335012.1\|319328_321029_+	asparagine synthase	M1PN68	Moumouvirus	2.8e-16	23.9
WP_013335013.1\|321094_322384_-	hypothetical protein	NA	NA	NA	NA
WP_013335014.1\|322398_323628_-	decarboxylase	NA	NA	NA	NA
WP_041934270.1\|323628_325359_-	asparagine synthase	M4R0Q4	Ostreococcus_lucimarinus_virus	3.5e-11	27.5
WP_013335016.1\|325523_326147_-	hypothetical protein	NA	NA	NA	NA
WP_083786958.1\|326253_326382_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_173362938.1\|326388_326562_-	hypothetical protein	NA	NA	NA	NA
WP_013335017.1\|326718_327804_-	hypothetical protein	NA	NA	NA	NA
WP_013335018.1\|328029_328284_+	hypothetical protein	NA	NA	NA	NA
WP_041934271.1\|328413_328767_+	hypothetical protein	NA	NA	NA	NA
WP_013335019.1\|328960_329641_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_013335020.1\|329615_330935_-	TIGR04222 domain-containing membrane protein	NA	NA	NA	NA
WP_013335021.1\|331232_332135_+	hypothetical protein	NA	NA	NA	NA
WP_013335022.1\|332140_332884_+	hypothetical protein	NA	NA	NA	NA
WP_013335023.1\|333061_333532_-	hypothetical protein	NA	NA	NA	NA
WP_013335024.1\|333732_333921_+	hypothetical protein	NA	NA	NA	NA
WP_013335025.1\|335592_338631_+	primase	Q7M2A8	Enterobacteria_phage	7.6e-17	24.3
WP_013335026.1\|338686_341179_-	hypothetical protein	NA	NA	NA	NA
WP_013335027.1\|341466_341949_-	hypothetical protein	NA	NA	NA	NA
WP_013335028.1\|341945_342362_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_013335029.1\|342470_343073_-	hypothetical protein	NA	NA	NA	NA
WP_013335030.1\|343189_343747_+	hypothetical protein	NA	NA	NA	NA
343480:343505	attL	NA	NA	NA	NA
WP_013335031.1\|343706_344450_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013335032.1\|345012_346776_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013334928.1\|346988_347189_+	hypothetical protein	NA	NA	NA	NA
WP_013335033.1\|347634_347826_-	hypothetical protein	NA	NA	NA	NA
WP_013335034.1\|347926_348268_+	hypothetical protein	NA	NA	NA	NA
WP_013335035.1\|348282_348525_+	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_157872036.1\|348712_348940_-	hypothetical protein	NA	NA	NA	NA
WP_013325777.1\|349444_350416_-	ExeA family protein	NA	NA	NA	NA
WP_157872053.1\|350405_352046_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013325775.1\|352061_352622_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.6e-44	53.6
WP_157872037.1\|355482_356082_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_157872038.1\|356245_357308_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
356101:356126	attR	NA	NA	NA	NA
WP_041934274.1\|357546_357984_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071881459.1\|358022_358628_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

373179 : 431504

Bacillus_phage(33.33%)

integrase,transposase,protease,tRNA

attL 378403:378424|attR 401057:401078

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013335047.1\|373179_375249_+\|protease	PatA/PatG family cyanobactin maturation protease	A0A217EQY2	Bacillus_phage	6.1e-18	31.6
WP_013335048.1\|375258_377658_+\|protease	PatA/PatG family cyanobactin maturation protease	NA	NA	NA	NA
WP_013335049.1\|377755_377971_+	cyanobactin biosynthesis system PatB/AcyB/McaB family protein	NA	NA	NA	NA
WP_013335050.1\|378136_378337_+	cyanobactin biosynthesis PatC/TenC/TruC family protein	NA	NA	NA	NA
378403:378424	attL	NA	NA	NA	NA
WP_013335051.1\|380061_380316_-	hypothetical protein	NA	NA	NA	NA
WP_013335052.1\|380610_381585_+	hypothetical protein	NA	NA	NA	NA
WP_049802823.1\|381908_383180_+	hypothetical protein	NA	NA	NA	NA
WP_013335053.1\|383400_385389_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013335054.1\|385395_386313_+	ATP-binding protein	NA	NA	NA	NA
WP_013335055.1\|386319_386811_+	TniQ family protein	NA	NA	NA	NA
WP_041934279.1\|386928_387600_+	hypothetical protein	NA	NA	NA	NA
WP_157872041.1\|387487_388975_+	hypothetical protein	NA	NA	NA	NA
WP_013335056.1\|390511_393532_-	primase	Q7M2A8	Enterobacteria_phage	6.4e-16	22.5
WP_013335057.1\|395901_400923_+	hypothetical protein	NA	NA	NA	NA
WP_013335058.1\|401717_402866_-\|transposase	IS4 family transposase	NA	NA	NA	NA
401057:401078	attR	NA	NA	NA	NA
WP_157872042.1\|404392_404992_-	sulfotransferase family protein	NA	NA	NA	NA
WP_013335060.1\|405138_406197_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_013335061.1\|406731_407289_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_157872043.1\|407297_407984_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_157872044.1\|408103_409507_-	hypothetical protein	NA	NA	NA	NA
WP_157872054.1\|409836_410637_-	ABC-2 family transporter protein	NA	NA	NA	NA
WP_013335065.1\|410642_411434_-	ABC transporter permease	NA	NA	NA	NA
WP_013335066.1\|411430_412411_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.9e-17	30.6
WP_013335067.1\|412521_414183_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_013335068.1\|414932_416003_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_157872045.1\|416173_417583_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_013335071.1\|418830_419499_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013335073.1\|419963_420719_+	hypothetical protein	NA	NA	NA	NA
WP_013335074.1\|420829_421159_-	RNA-binding protein	NA	NA	NA	NA
WP_013335075.1\|421564_422266_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_071881458.1\|422952_424224_-	UPF0236 family protein	NA	NA	NA	NA
WP_162052191.1\|424426_424579_-	hypothetical protein	NA	NA	NA	NA
WP_013335078.1\|424548_425031_+	hypothetical protein	NA	NA	NA	NA
WP_013335079.1\|425165_425645_-	ester cyclase	NA	NA	NA	NA
WP_083786956.1\|425883_426174_-	hypothetical protein	NA	NA	NA	NA
WP_013335080.1\|426355_427687_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_013335081.1\|427811_428369_-	hypothetical protein	NA	NA	NA	NA
WP_013335082.1\|428611_429079_+	hypothetical protein	NA	NA	NA	NA
WP_157872038.1\|429121_430184_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_041934274.1\|430422_430860_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071881459.1\|430898_431504_+\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_014501

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_014501_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_1

51929-52059

Orphan

Consensus_repeat	Method
ACCATCAGCCCAACCTCTACCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_014501_1

>merge|NC_014501|1|51929-52059|CRISPRCasFinder
GCCATTAACCCAACCGCCACCGCCCCTAGTATTTCCCCAACCCCCTCCGCCGCGACCATCAGCCCAACCTCTACCCCCTGAACCATCAGCCCAACCTCTACCCCCTGAACCATCAGCCCAACCTCTACCAC

>NC_014501|1|1|51929-52059|CRISPRCasFinder
GCCATTAACCCAACCGCCACCGC	CCCTAGTATTTCCCCAACCCCCTCCGCCGCG
ACCATCAGCCCAACCTCTACCCC	CTGAACCATCAGCCCAACCTCTACCCCCTGA
ACCATCAGCCCAACCTCTACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_157871859.1\|52446_53334_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|275088
NC_014501.1\|WP_013320218.1\|61656_62277_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NC_014501.1\|WP_013320202.1\|45692_46451_+\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|309474
NC_014501.1\|WP_013320219.1\|62312_62747_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NC_014501.1\|WP_013320201.1\|44895_45696_+\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NC_014501.1\|WP_013320216.1\|60445_60955_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381326
NC_014501.1\|WP_157871858.1\|46883_48749_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227133
NC_014501.1\|WP_013320205.1\|48886_49996_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320206.1\|50144_51332_-\|GRRM-system-radical-SAM/SPASM-domain-protein	unknown	unknown	gnl\|CDD\|211984
NC_014501.1\|WP_013320198.1\|40677_41946_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377544
NC_014501.1\|WP_013320200.1\|43786_44890_+\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NC_014501.1\|WP_013320197.1\|39816_40614_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_014501.1\|WP_013320211.1\|54697_56248_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|227813
NC_014501.1\|WP_013320212.1\|56587_57421_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NC_014501.1\|WP_013320199.1\|42011_43298_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_014501.1\|WP_013320215.1\|59682_60435_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933085.1\|57486_58476_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|163279
NC_014501.1\|WP_013320207.1\|51356_51758_-\|rSAM-associated-Gly-rich-repeat-protein	unknown	unknown	gnl\|CDD\|275087
NC_014501.1\|WP_013320214.1\|58792_59665_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NC_014501.1\|WP_013320210.1\|53382_54570_+\|TRC40/GET3/ArsA-family-transport-energizing-ATPase	unknown	unknown	gnl\|CDD\|367057

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_157871859.1\|52446_53334_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|275088	TIGR04262, possible_ABC_transporter_solute_binding_protein, extracellular substrate-binding orphan protein, GRRM family. This subfamily belongs to bacterial extracellular solute-binding protein family 3 (pfam00497). In that family, most members are ABC transporter periplasmic substrate-binding proteins. However, members of the present subfamily are orphans in the sense of being adjacent to neither ABC transporter ATP-binding proteins or permease subunits. Instead, most members are encoded next to the two signature proteins of the proposed Glycine-Rich Repeat Modification (GRRM) system, a radical SAM/SPASM protein GrrM (TIGR04261) and the Gly-rich repeat protein itself GrrA (TIGR04260).	3.92427e-84
NC_014501.1\|WP_013320218.1\|61656_62277_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.18515e-68
NC_014501.1\|WP_013320202.1\|45692_46451_+\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|309474	pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are involved in the assembly of pilin. However, the precise function of this family of proteins is not known.	0.000516771
NC_014501.1\|WP_013320201.1\|44895_45696_+\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	1.09899e-17
NC_014501.1\|WP_013320216.1\|60445_60955_+\|aldo/keto-reductase	gnl\|CDD\|381326	cd19100, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	8.91072e-28
NC_014501.1\|WP_157871858.1\|46883_48749_+\|pilus-assembly-protein	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	3.5416e-47
NC_014501.1\|WP_013320211.1\|54697_56248_-\|peptidoglycan-binding-protein	gnl\|CDD\|227813	COG5526, COG5526, Lysozyme family protein [General function prediction only].	2.26767e-62
NC_014501.1\|WP_013320206.1\|50144_51332_-\|GRRM-system-radical-SAM/SPASM-domain-protein	gnl\|CDD\|211984	TIGR04261, putative_arylsulfatase_regulatory_protein, radical SAM/SPASM domain protein, GRRM system. Members of this protein family are radical SAM/SPASM domain proteins (see pfam04055 and TIGR04085) related to anaeroboic sulfatase maturating enzymes and the peptide modification enzyme PqqE. Members are found primarily in Cyanobacteria adjacent to a short protein, ~150 residues, in which the last ~60 residues tends to be repetitive and highly glycine-rich (see TIGR04260). The arrangement suggests modifications to the repetitive C-terminal region by this radical SAM domain enzyme, but the purpose of this system on the whole is unknown.	0
NC_014501.1\|WP_013320198.1\|40677_41946_-\|ATP-binding-protein	gnl\|CDD\|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	2.96185e-140
NC_014501.1\|WP_013320200.1\|43786_44890_+\|pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	2.97532e-138
NC_014501.1\|WP_013320197.1\|39816_40614_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.83258e-07
NC_014501.1\|WP_013320212.1\|56587_57421_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.79499e-62
NC_014501.1\|WP_013320199.1\|42011_43298_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.38493e-63
NC_014501.1\|WP_013320219.1\|62312_62747_+\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	4.30429e-50
NC_014501.1\|WP_041933085.1\|57486_58476_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|163279	TIGR03466, HpnA, hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.	0
NC_014501.1\|WP_013320207.1\|51356_51758_-\|rSAM-associated-Gly-rich-repeat-protein	gnl\|CDD\|275087	TIGR04260, hypothetical_protein, rSAM-associated Gly-rich repeat protein. Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.	1.02786e-16
NC_014501.1\|WP_013320214.1\|58792_59665_+\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	3.2251e-104
NC_014501.1\|WP_013320210.1\|53382_54570_+\|TRC40/GET3/ArsA-family-transport-energizing-ATPase	gnl\|CDD\|367057	pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.	1.15141e-134

>NC_014501.1|WP_013320207.1|51356_51758_-|rSAM-associated-Gly-rich-repeat-protein
MNITTTTGLVGFLLALSAFNIPSSEAKTLDNSASPVKPTIEQRLAKISATIREQENHLPESAKTDLDTEIAGAWGNGRGRGWVDGSGRRGWVDGSGSRGWANGRNGGGWGNGRDGSWVNGRRWGDGGGFWNRR
>NC_014501.1|WP_013320206.1|50144_51332_-|GRRM-system-radical-SAM/SPASM-domain-protein
MTLSQQNFLEIPAADISTFGPINLVVIQTTSFCNLDCDYCYLPHRHLKNQLSLELIDPILKTVLTSPFVEDSFTICWHAGEPLAVPVAFYRSAFQIIAEAQKKYSTKPCQIFQSVQTNATLINAALCDLFKEYQVLVGVSIDGPAFIHDAHRKTRSGKGSHASTMRGISLLQKNDIPVQIIAVITEDSLDYPDEIFNFFMENGLTDVGFNLEETEGVNQSSSLDKIGIEERYRAFMQRIWDLTAQSEGKFQLREFESICTLIYNDCRLNNTDMNAPFVIVSFDHQGNFSTFDPELLSVKTTDYGDFILGNVFHDTLESVCHTEKFLKIYQDMKTGVDLCQQTCQYFGVCGGGAGSNKYWENGTFRSTQTRACRYRSQIITDIILAELENIYQITS
>NC_014501.1|WP_013320205.1|48886_49996_-|hypothetical-protein
MNLKRYPKFRSLFLLCLIIVAIVSFNYLSIEKVDAADEQSGTSSRPQCSYHPEAYQELNLTNLKDELEGTGLIGSIHGASSSSKLFVLSVREPENFFNHREFSLVTYDRAAFKALTEVKRHDQVCIRGRFLANPSQQKHILVESLKILEPWSYKNDFKPYERKTALPEELKNQTSVIGKVHAVAADGGVMVIEYKDAVIPVFVQSPQLTKDLFRGDIIRLHYRLQNLPTQPTHLRLNLDLDKPLQMIDSIAAWHEKEIVVKGKLVKFPQSPQIKFDVYALAVDTGGITRYFTLVNFDDASEFEKIRQKLAQIWNDHLSTASSGRNMLINEDVVIEVRGRGNVVSPGQANPQILLSGVEDIQLLSYGATR
>NC_014501.1|WP_157871858.1|46883_48749_+|pilus-assembly-protein
MLPNPDIVIEDKQKQTQPTTPAFPVLPRAVAPPVGDMAVSNIDSMAQTIDLGTAAIIPRLVLREAPAREVLAVLARYAGFNLIFTDSQTSAAQGQGQQGAVAPQGQQTVSLDLENESVQEVFNSVLMVSGLKANRRGRTIFVGTALPAAARNLITRTIRLNQVEAINAATFLATQGAEYQRLVTQTEDITDPLTGRVVGRRETPPGLYPLTVVNQAGVNSPLLLQGLSLVADQRLNSITLIGEPRQVEIATSMLVQLDARRRQVAVNVKVVDVQLQGTQSYSSRFSFGFDDGFFLQDNGTAILNFGNYNPPTSAQTNASVVTPPVISVPDALGGLTPNIFFDQQNAPFGNFNSGSADILRTANNTIPYARPSFGTFNNPFQPGVSAATYDAATGQRTFTYQLPNLFQFPQKFLATLQASITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQDAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGATQTFDSGNGSNNTLTLLSRREMTSGLIRMRDGQTLILSGIISETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIIDDRPDATFGINYNPGPGAAELLRRQGFPVQPK
>NC_014501.1|WP_013320202.1|45692_46451_+|type-4a-pilus-biogenesis-protein-PilO
MTFSDEYTPEEGQDFEDSSKYPVAFGITFTPKVSGIAFAILGGIGAIYILLNMVMPAYTTYQEQKTEEASLLDNVNQQNTGNFAKKLAAAEQELQQKQALRKEILAFFGNEKSLDTLLLDINGFFKSRNVELVSFEPQGEVTVIDDGSLGQGVNQKLKRQSINIEMKGEFEQSQSLLRDLEKLQPLILIKNLVSEPIDSKQKAGVFDRTGKLTPAKLKLKTTFLLEVILPVSFGDLPPPPPDPSSQSAQPPQ
>NC_014501.1|WP_013320201.1|44895_45696_+|PilN-domain-containing-protein
MYSIDINFLKDRQSEEANKTFTQTRSAAPTAQEQIPMLIGLGVMVLLIAFPLGLLALLNWQTTQTQKNVEELKVKVKEFTDQNQKLTQIRKYIQAIDENTQSLVSVFNQVKPASAILQEIRNRIPEAVQVSSIKQTLVPQTAPPGQPAPPGQSSMMANQLTLEGYAINYDDVNKFILSLQNSPFFKAETIKLIKAESSPLPLELENPEKFVAKNLIVEFPEGVKYTIVTQLNESPASQLLPALARNGAVGLVTRIKTLEQKGVLKP
>NC_014501.1|WP_013320200.1|43786_44890_+|pilus-assembly-protein-PilM
MLSFLKKLLPKQSQGFGMEITPERVNLAQLSKQGQNYRLSKFCTVEIPEGIFQEGKIVDSPALAEIIQEMLTEYKIKAKRVATGVPMRESIIRIIPIPAELDDQELRDMVLNHEASLYLPYPREEVDLDYHKLGYFEDEDGIEKVHVLLVATRREVTDSYIETFQQAGLQVDVIEINSFALIRTIREQLRQFSSNEAAVLVDIEFDNTEIAIVVDGVPQFSRTVPIGTYQLQNALSRAMNLPTSRSPDILQGMTIPVTAFDSMSTAGAAINPGMTALMRVLGELTDELRRSINFYLNQSDELEIVQLLLAGPGGGLAQLDEFFTQRLSIPTMQIDPITALSLDVEQEITSVQRPGLGTVLGLGLREV
>NC_014501.1|WP_013320199.1|42011_43298_-|serine/threonine-protein-kinase
MFQSQQILTNRYQLQQRLGRTAAGHQTWLALDTESNQLVTIKFLAFNPQMEWEELKLFEREAQVLQSLDHPRIPRYRDYFEIDKNLGQGIPWFVLVQDYISGSSLQDLLDQGQRFAEDEIRSLTTQVLEILIYLHEQSPPVLHRDIKPSNLIRGQDHQIYLIDFGAVQAQAAVTGVTFTVVGTSGYAPLEQFWGRAVPASDLYALGATLIHLLTGVSPLDLPHQDSQIQFADKVSLKPDLLSWIQQATQISLEKRFSSAREALEALQSGNLPRRYGEKFGRKNKLSQPLKSKINLLKNPEKIDIYYPCFFQISLSPIQFWLGVSTVIILLIVLPPVGFILLIALFLGFLNIHVCLRSESFKINYKLWNFTYSTKEEKNYELIGVFLHCVSKSYQVRLRTTQGTYIIGENLQEEECAWLGQEIQDFIRE
>NC_014501.1|WP_013320198.1|40677_41946_-|ATP-binding-protein
MNQSLYYQIYSLILYQSVFTNEVGEAFLNLLQALAQEQQTSTKIALLKAYGSWVKSLAARNISWQDFMIEQILWDDNPFSRQVQKKSLEELPHSLIDAVKYDLTILQSVYHCQPEKITEWVQKYTQVDFALIPWTFPSIKTSFLTSQVNWADTVEDLANYYRKQGSGIFAQYKAFRWQNGNLAGIANPDPIKLQEIVAYESQKESLVKNTEFLLAGYPALHVLLYGSRGTGKSSLVKALLQQYHEQGLRLIEVGKSELKDLGIILEELRDLPQKFIIFVDDLSFEEDDEAFKALKVVLEGSLTAKARNVVVYATSNRRHLIREFFGDRPRPSEGDEVHAWDTVQEKLSFSDRFGLTLTFEAANQDTYLEIVRVLAQQANIPLSWEEIEQKAKQWAIRHNGRSGRTARQFIDFLLGELKRAAG
>NC_014501.1|WP_013320197.1|39816_40614_-|CPBP-family-intramembrane-metalloprotease
MSIITNRINFWESLLGLYCTGLIGILSLLLIAVPQIEQFLATNPDASETPVFILALMSLIVPSILLAISVVIGLLLSQKIGLRSYIVEFFSNTIEEVKLKNDLVLGFWGGIIVALIIKLLETVFRLYITELNQLENLTKFDLSKILLGVFYGGLTEELLLRWGLMTLLAWGLWRLTGGKDTPNSWVMGLAIAISSIVFGLGHLPALSVQLPLTLPIIFRTVVLNAIGGVIFGWLYWKRSLEVAMIAHASSHIGLAVLQGLNGKIF
>NC_014501.1|WP_157871859.1|52446_53334_+|transporter-substrate-binding-domain-containing-protein
MKTLTLALISLAFTLGVPLKSGAETVLERVARTGTLVVGTATDLVPLAYVNDKNELVGYSIDYLNFLKNQLQTQLGRDVTLQFVEVTPTDAIPKLISQEVDIICNAAFTWERDKFVDFSVSMGLGGTRLLVKGGSQLGSVDSLAGKRIAAIRNSIPAQVIKVLQPKAIIVNVESMQEGFDSVKQGKVDGFAASGIVLDGYRQTVSDKNAYQVVPQKPYNREGIACMVPENNSKFLDVVNFSVVRLMQGYLDGEPSSVAIVERWFGKDGIITIDPELIRNYFQDVVNSREQIIIEK
>NC_014501.1|WP_013320210.1|53382_54570_+|TRC40/GET3/ArsA-family-transport-energizing-ATPase
MRVILMTGKGGVGKTSVAAATGLRCAELGYRTLVLSTDPAHSLADSFDLELGHDPRLVRPNLWGAELDALMELEGNWGAVKRYITQVLQARGLEGVQAEELAILPGMDEIFGLVRMKRHYDEGTYDVLIIDSAPTGTALRLLSIPEVGGWYMRRFYKPLQGMSIALRPLFEPIFKPITGFSLPDKEVMDAPYEFYEQIEALEKVLTDNTQTTVRLVTNPEKMVIKESLRAHAYLSLYNVSTDLIVANRIIPDTVTDPFFKKWKDNQQIYKQEIYDNFHPLPIKEVPLYSEEMCGLEALERLKDTLYKDEDPAQVYYKENTVRVVQEKNNYSLELYLPGVPKEQVQLNKTGDELNIRIGNHRRNLVLPQALAALKPSGAKMEEDYLKIRFSDALSA
>NC_014501.1|WP_013320211.1|54697_56248_-|peptidoglycan-binding-protein
MVTLDAALKKEYIELYKNCKIKSECINRIDQYIDLISQKKDKYKVVEQATHVPWYFVAAIHLLESSLNFNTHLHNGDPLTARTVHVPKGRPVEGQPPFDWPTSAIDALNYAGLSSWNDWSIEGMCYSFEKYHGWGYRQYHPQVKSPYLWSFSNHYSKGKYAADGIYDPNLVSQQCGAMVLIKRMEERGLLHISAPPLQQVSWLELYRKEVGENASPRAVLAAWANDKLMEVVELPDRSTEDLISFCSKYPNAKTFHIAPSTKPAPAVTTPLVVQVTSLPPLDRILRWGDKGDDVKALQQALNRLNFNAGAADGDFGDQTQEAVKAFQLRSGLLVDGEVGSVTWEKLGGTGKVILPNLASFAASEAAKKLRWNGASSDAEKYLAPLRRIMQQLGHIGPEPVFYNWCAAFVTYCCRQVGIEIPDQPEGFWASMALVDSWQYWGKQKGYWHPKREVIPERGDIVTFDWSGVNGQFNHIGIVRGYTSGSSLIETAEGNVDNQCGHFSRSLSLISGIVRIR
>NC_014501.1|WP_013320212.1|56587_57421_-|metallophosphoesterase
MVYWILTEPLKVERLTVAIADLPSSLIGLKLVHLSDFHYDGKRLSEDLLAEVIATSNRENPDLIVLTGDYITYLPDPIEDLIDRLKYLKSRWGIYACLGNHDIYYPGAKLRVIEAFSRIGIRVLWNEIATPFGEQFPLVGLAEYWSKEFAPDLVMNKLDPRVPRLVLCHNPDAAQMLQQWRVDLQLSGHTHGGQVVIPGLGSAPLLLQSICRLTPKFLQPFIPYLRLCSRVVKNWHWVQGWHQVGRNQLYINRGLGTYFPGRVFCPPELTVIRLDKR
>NC_014501.1|WP_041933085.1|57486_58476_+|NAD-dependent-epimerase/dehydratase-family-protein
MTIKVFVTGGTGFIGTNLVRLLLEQGYSVKALVRPNSRLDNLKGLEIELIKGDLNNPDLSKQMQGCSVLFHVAAHYSLWQSEVEKLYQSNVLGTRQVLAAAREAGIERTVYTSSVAAIGVGKPGESVDETHQSPVEKLVGHYKKSKYYAEQEAIKACQKGQDVVIVNPSTPIGPWDIKPTPTGDIILRFLRRQMPAYVDTGLNLIDVRDVAWGHLLALEKGKTGERYILGHQNLSLKELLEKLAQITALEAPKTTVPLWLPLAVAWVEERILAPLGKPPSVPLDGVKMSTQPMYYEAAKAVKELGLPQSPLEIALKDAVEWFMSHGYIA
>NC_014501.1|WP_013320214.1|58792_59665_+|aldo/keto-reductase
METKKLGKTDIIISAIGLGGMPLSLQTRPPRPQSIEVIHKALDLGVTLIDTADSYCQDESDKHHNEKLIAEALQKYKGDTSQVIVATKGGLMRHGGNWSRNGNPDHLRTTIHESYQALGGEKPIAVWQYHAPDSNYTIKEALTPAKEAIEQGLIRYVGVSNFSVEQIKQAREIVEIVSVQNQYNPWYREPEFDGVLEYCEEEGLTFLPWSPLGGSRRVSSLKDIPIIAQLAQEKAVSVYQIVLAWLLSKSPCVVPIPGASKTSSIEDSVKALAVKLSSEEIQRLESQLTR
>NC_014501.1|WP_013320215.1|59682_60435_+|hypothetical-protein
MVILSQNSSPNLKEIPTEDLKQELINLTQHRDKDRLNKKVQFYQDTLAPIFEELSQRNPYPQAEEQTSLIEGVWFPIWSTIPFQDLIPGRLIEQSYQIFLDNGYYGNIARYAPFNPLPILGKFSQALVAYDLILIQKYAVKNNQWLIENVGFKQALKFADSPLDIEKAKKWLVQIVESQVNLNLEKPEVFNVAFLKNINKKVSKQLKGALKATPHFEHLYIDSDFRIVKSRREEKQRFSYTIAVRPPFKF
>NC_014501.1|WP_013320216.1|60445_60955_+|aldo/keto-reductase
MDIVTLEGKPVSRLGLAGHPNTEESFVMTAFRNGINFFFFYDPSFINLLNGLKSLMVTHREQLIIATGTESRDLGEIREQLQQIRQFLNTDVVDVFLLQYVSPDDTLEDVQAALEQLHIWKSQGLIRYVGASVHNRPLALHLIKSGLCEVLMNSYIINLLNVTLFSAPI
>NC_014501.1|WP_013320218.1|61656_62277_+|HD-domain-containing-protein
MRDQVIAWLSNNVSEHRLQHILGVEQMSIQLAYQHGVDPKKAGLAGLMHDLAKFFPPSKLLQMAQDSGLKIDQLCRSDPHLLHADVSAIVARDEFGVKDEEILTAISNHTLGSPEMSPLSCIVFVADALEPNRGDTPELELMRQVSWQNLYKSVRQTCDFSLKYLLNSHKTIHPRTILTRNWALQIVKQQARTSTQPEGLVAKVDT
>NC_014501.1|WP_013320219.1|62312_62747_+|ribosome-silencing-factor
MTNTENYPLNNLLTLSFPTTEADKKTSRLAWTIAQAADDRKGADIVALDVSDVSYLSDYFIIVTGFSRTQVRAISDAIEEKAAIECNRYPSRTEGKSEGSWVLQDYGDVIVHIFLPEEREFYNLEAFWGHAKRFNLSEIDSLQE

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Crispr_ID: NC_014501_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_2

499730-499830

Orphan

Consensus_repeat	Method
GGCGGGTTCGGTTGACCCAAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_2

>merge|NC_014501|2|499730-499830|CRISPRCasFinder
GGCGGGTTCGGTTGACCCAAATACTACTTTTTTCAAGGGGAGTTATTTCCAGCAGTGCTGACTAACATACCGAGTTTAGGCGGGTTCGGCTGACCCAAATA

>NC_014501|2|2|499730-499830|CRISPRCasFinder
GGCGGGTTCGGTTGACCCAAATA	CTACTTTTTTCAAGGGGAGTTATTTCCAGCAGTGCTGACTAACATACCGAGTTTA
GGCGGGTTCGGCTGACCCAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013320605.1\|491183_491507_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320614.1\|498371_499550_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_014501.1\|WP_013320611.1\|496497_497064_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871769.1\|504195_504414_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871767.1\|502584_502998_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_014501.1\|WP_013320621.1\|509936_510302_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319939
NC_014501.1\|WP_041933101.1\|497085_497361_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320618.1\|503369_503855_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|367833
NC_014501.1\|WP_013320613.1\|497977_498394_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320619.1\|505819_507982_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NC_014501.1\|WP_013320622.1\|510842_511172_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341171
NC_014501.1\|WP_013320616.1\|501557_501995_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871768.1\|503885_504032_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320609.1\|492522_496095_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320606.1\|491506_491734_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NC_014501.1\|WP_049802665.1\|497357_497546_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320608.1\|492189_492426_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NC_014501.1\|WP_013320615.1\|501421_501604_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320620.1\|508905_509895_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320610.1\|496158_496485_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013320619.1\|505819_507982_+\|type-I-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	0
NC_014501.1\|WP_013320614.1\|498371_499550_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	5.62846e-31
NC_014501.1\|WP_013320622.1\|510842_511172_+\|hypothetical-protein	gnl\|CDD\|341171	cd17282, RMtype1_S_Eco16444ORF1681_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli G4/9 S subunit (S.Eco16444ORF1681P) TRD1-CR1 and Zobellia galactanivorans DsiJT S subunit (S.ZgaJTORF2697P)TRD2-CR2. The recognition sequences of Escherichia coli G4/9 S subunit (S.Eco16444ORF1681P) and Zobellia galactanivorans DsiJT S subunit (S.ZgaJTORF2697P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various putative type II restriction enzymes and methyltransferases and may also include type I DNA methyltransferases.	0.0043473
NC_014501.1\|WP_157871767.1\|502584_502998_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	7.75238e-11
NC_014501.1\|WP_013320608.1\|492189_492426_-\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	1.52493e-25
NC_014501.1\|WP_013320621.1\|509936_510302_-\|VOC-family-protein	gnl\|CDD\|319939	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	8.90393e-62
NC_014501.1\|WP_013320618.1\|503369_503855_+\|DUF393-domain-containing-protein	gnl\|CDD\|367833	pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown.	5.45041e-25

>NC_014501.1|WP_013320614.1|498371_499550_-|ParM/StbA-family-protein
MADVTIAADFGASLGRAIYSTGSGYCKPELMLLDPQVVLVPAKSISNYEKYKIGQANPEDSAWVKFDEAHFAVGFLAKKNFHAVHCLESLKVDSAIPQALSIIGSVAQKKNLPSQFSLSLGILLPWNEFRDREKFASQISTALSDYTFRGQQFSVQLESLTALPEGGGIFARGRMPQQPTLKLLSPKELTIAVIMLGYRNSSILVIEKGELTRGSTGDFGFARMVQKIQTFTSGQKADILVPVICSARAKLGKRVLETLARSGRTELRNREVEEIAEAIVDARAEYVALLENWLIQHLPNQTKIDEFIISGGTARYLKKELTDLLKGFGGSLNWCTGLEERIKKTFGDIVSNNSLESRLADVYGLFYKLHNRPLPRIRETTGEPTDVNVRAI
>NC_014501.1|WP_013320613.1|497977_498394_-|hypothetical-protein
MSTSEQFNFVFRHQPKRTSKYGILLTYINQDGADLTRCERMLHPVAAFWLPFAYQNCTDASSSELQQLARSAVYQLKLHIHYLENSFGLNDDSSALEPTQKLEKPFLAEVSTNGWHEKDNLPKIEDFSDEDDILSQLI
>NC_014501.1|WP_049802665.1|497357_497546_-|hypothetical-protein
MIVTGELKQNFQQIWSEATKTLGNAQSLTEQVEGRWKEFQLQKYQPPTSLPSSSTESSNSDY
>NC_014501.1|WP_041933101.1|497085_497361_-|hypothetical-protein
MIAISQEESHLKLQQQQLAIVAEKQRKRWQIIKQWGNLINSWTWAVVLMAIIFLLGLHTGLNLLPEGVVCKSRESFCYFLRFDSNKRILKR
>NC_014501.1|WP_013320611.1|496497_497064_-|hypothetical-protein
MDFPRTNKKLLSHSEKIKALHERELDLDFDGDGLTEREERKYGLNPLSPDTDGDGLYDGQEIGIHINPHLYSKVPPSVEKGSEKEKHRETYLHSVQTLLKNQELSYQALYNQIAGDDWLGRSLDERVLAAQVHSGSSEDQIKCSLAQSPYVQWQLEEGQWDRDLAIGYIGGLTRQFGAKRTQEEEIAE
>NC_014501.1|WP_013320610.1|496158_496485_+|hypothetical-protein
MKAGAIFESILERSLYEPDGTIKPHFREFLRKQGSSPEEIAEYERQKKEEIEDRKLFAPRNRPASSLRDKIIARAGLDTEELLSQGYIAVEDLETEQDLDSFDWEDLL
>NC_014501.1|WP_013320609.1|492522_496095_-|hypothetical-protein
MTLYLAHFDTKLRQDLELREPIKNCLAEYLFPDAKFTLGEINPDTVKAEDLRAYKGMSLQFASGKRMYFSERPVRDLLYPNASDGAAYGSLPFTPCQKFSEVRQARVLIIDDSTGASDGILPLQEAKKLVGDCYGKMSLELAEQLTSSKNAPIQFRLGIRPQNDCDVYRIAKGTLAPDRRLETLTSAVISGREKMKVGYDLILPTSSFKGRKGADAIKPGEYLLNIGIGVKAIAQYGKQSLGTQVLVNYPQGVEADILPILERKAKELANAQSDLHALAKHFLQNYQQRTITTEEEYLKDLDLSPEDTLAEEDAENIQKGERIFYDLLKTDLEHHGQLLEHPFVIDELKKFLQRQWMDIATGRAIKFQSALAQPSLDLGENEVCVPRMPNGAELIVTRSPLVNSNGVITLTNRHLPGLMHLEGTIHIHPETAAKHLQADFDGDRLAFERADKYPTLTAEIKESLLPQNRYPDVVKPDKVAYQGSFEEIATSAVKNDIGKIANQIMRAVSLRWETVLMPQEKKESYVGQVAKYYREILDKDASPDNHFSIPQKYKQTIQEIANLPQELTAQQIETALQQMRDIQYKIVGDLSNELQVAVDGPKSANRPNTAILNACREIGGYQPVAWLSGRDKSRNPQVYRTHPLESKNYSPIDRMIGVANEKWQENRLISRPVHQFREFFPSVKNPNLTEIAGEIKETYNDYLKKARTLTDLKTEHPELIEPYIEVTSATSQRKIYLTRLDRFGGLESGLLNPNKPCTLDLRVVKNTIEPEIPNTLLAVATLNIDEKLVEQPVGAIATSSVEQHNLKAGRSLIQASAITRPGITDGRIEGIYSELDEYVNMLRQQHPVNERRELAAALWHNAHTRDEYQTKKALLAFKLFPDEVIQQLSKLQFTELKVVGLHFPTNEHGNKQWRGEEVDCEIALHPIPDKSGQLEEKRIIKVENKVLAPLTNESPAMAVGTKFKASILAEPSSGVIATTPKGNTLKIGQIKNFAYRKHSWQGQEAKINIALVNNGRGRAIPLVTLDGNALGVLDKESEMNLKERNLLSAKGLTLVARLSNTPSTTAQVIVKPETVLYPWQQRELEKQMEAKRGVYRQQYEAYASDVGRNSSLAGASPHLIDVEVARLAYADTGDSHEVATILSQSDQVRQWRASVPNALSWDEYVNQAKEYVRYVQSAAKERSNQVSFER
>NC_014501.1|WP_013320608.1|492189_492426_-|DUF433-domain-containing-protein
MNHELLKRITHNPDICHGKPCIRGLRYPVEFILELLSAGMTTEEILSDYEDLEPEDIQAVLLFAARLSQIKSIHKIAS
>NC_014501.1|WP_013320606.1|491506_491734_-|ribbon-helix-helix-protein,-CopG-family
MVKPQISIRLAPALLERLNRYIERTGRSKTEIIITALSGYLGANDGDDLGNRLTRLEENMADLLTTVKDLKEEQN
>NC_014501.1|WP_013320605.1|491183_491507_-|hypothetical-protein
MQIEIQGQDAIEIAQDIVTTEGVQGSYEVISEVEREGTLATIATIIGITTGAITIAEKLYELNKKSVNSPESVKIERVLLVGRKGDRLLLKDATLEQLQKLLEQEKS
>NC_014501.1|WP_013320615.1|501421_501604_+|hypothetical-protein
MEIICHKIPLKAQKSDFAYWQTQSYQARLKTLEEIRQEYHQWKDNSVESRLQRVYTISKR
>NC_014501.1|WP_013320616.1|501557_501995_+|hypothetical-protein
MLNQDFKEFIQFLNVNQVHYLVVGGYAVAVHGYPRYTKDIDIWIEMSPENAENLLHALEEFGFGSLGLQTGDFLTPDQIIQLGYPPNRIDLLTTIDGVNFQDCYPLKVEVVVENIVVNFIDLDNLRKNKKASGRLQDLADLENLN
>NC_014501.1|WP_157871767.1|502584_502998_+|RDD-family-protein
MLDIIPISLVVFGVAYFFLGFDRVLSDYFHNNQDIELRKTFLSARNLIRETTLLLWIFYGLLMDCSKYQGTHGKILLRLKVVDDQGGRITFSQSLKRAYMKIIGAIPLGLGYFCTIWRKDKLTWHDLAAKTRVIHRT
>NC_014501.1|WP_013320618.1|503369_503855_+|DUF393-domain-containing-protein
MSSLPTQSPNSLETFTESPKWKIKLLYDGECPLCLREVNFLQKQDRGRGLVAFVDIADINYNPRDNGGVSYQAAMGRIHALLPDNTVIKNVQVFRRIYSILGIGWIYWATKLPIIRPVVDRLYEIWASLRLRLTGRPNLETIIKERQQRLECQSQGRCRLN
>NC_014501.1|WP_157871768.1|503885_504032_-|hypothetical-protein
MLNQHILFYFGKVKFPLGIIFKHRDELYQYDESCRRLIGDAILMRSVR
>NC_014501.1|WP_157871769.1|504195_504414_-|hypothetical-protein
MGQPNPPKLGMLVSTAGNDSLIENWYSDQPNLPLLSNGQKLDKTTFKKGAIFGSTEPPLLGMLVSTAGNDSF
>NC_014501.1|WP_013320619.1|505819_507982_+|type-I-DNA-topoisomerase
MSKKLFLIEAPGKLKKLQQILGSEYIVKASGGHIRELAKDGDDNLGFDLQSESISCRFVPKNPMARKTISQLKELARQVDTVILATDEDREGEIIAWHLKEVLNLRNPQRITYREITPAAVKASLKRPRSLDMNLVNAALARSVLDKLVGYRGSPLVWKLNNGAKSIGRVQSAALHILCQREREIQEFKPQDYWLVSVTYSEGFKAYYLGEKSSTATGKEENEERDDAGEKEENKVEATKVLSESEADRLVSIAGEFPHHVLKVESKTVSKNPPAPFTTSSLQQAAGSRLKWSPDKTMQVAQRLYEGGYITYMRTDSYHLDPQFCATVKQWLTEKDPNNVPAKVATHRTSKTAQEAHEAIRPTDIFKPSIELKQEISAEEFELYLLIWLRTVASQCKPAQILKTRIITQSGDVFWQARGQIVTFAGYAKYWKDLSDDLLLPQVSQGQLLHLLEAGHEKKQTQPPPRYSEAKLVQVMERRGIGRPSTFAPTVKTLKERGYAEVQKRQLQATPLGLEVDAFLEKTLPELLQAEFTAVMEDKLDAIASGKENWERYIIGWNEDYFAVALVKALKVIGSQPPSSKNSQSQNAQSHSKKESKIECPHCAHKMVEIPSSSKKLHKDYFLKCPSCQQVMFYNKWRKTWELPGEKNEESAPSLKLTKHPCPVCGEKLAVREYEKEGIKKRMLVCSSPKAKTDKKHKEVVYFESKNVFWSKKYGEFPID
>NC_014501.1|WP_013320620.1|508905_509895_-|hypothetical-protein
MSQSVIEPPFMPPKFPTPFSAMGYLFGQFETALPVEHQGKRKGNLQLFDGTILPARVGLTVWQKLSQNPTFNLDKTYLWRVYFRTTTEAKLSQVQLIKCVSLVEDYSFNDLPPQQTASDQFQIQGRILCTDNEKVVIRLERNEIPPPGQENQSRWQPFLITVSGSLPGAEIGQFWELLCIRKGEELVLKEANWVDETITVTKTLPTAVQIPAASASKNSSSTDSSSPIIMINGKQPEMTVKFTTRPELPEQGKTVILEVSGEGGISVRASLNRKTLKKQVEKMDSFADWVAALSGKVARIGSDGVVELEGAGVTVFEKKKQKVEDKPDA
>NC_014501.1|WP_013320621.1|509936_510302_-|VOC-family-protein
MTITLDHTIVPAHDKKASAEFFAQIFGLLVESPIGHFAAVKVNDTLTLDFADTEDFESHHYAFHVSDSEFLAIFARVKEAGLSYSSDPMHHNTGQINHRQGGRGFYFFDPNGHNLELLTRT
>NC_014501.1|WP_013320622.1|510842_511172_+|hypothetical-protein
MKPKKLKTDIVSVRFLPREKEKLAQQAAQQNITLSGLVRLNALAQSNNSRIKFVPEVNRKLYFELGKIAEKLQDKEANKDSLNSLYLLLNEVRKELMGIKQPPTQETNK

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Crispr_ID: NC_014501_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_3

563929-564025

Orphan

Consensus_repeat	Method
ACAACAAAACGCTATAGAAATAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_3

>merge|NC_014501|3|563929-564025|CRISPRCasFinder
ACAACAAAACGCTATAGAAATAAATAATAACGGCGGCTGTTGTGATGCTCAATCTCCGGCTTTTGATGAAGTACAACAAAACGCTTTAGAAATAAAT

>NC_014501|3|3|563929-564025|CRISPRCasFinder
ACAACAAAACGCTATAGAAATAAAT	AATAACGGCGGCTGTTGTGATGCTCAATCTCCGGCTTTTGATGAAGT
ACAACAAAACGCTTTAGAAATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013320661.1\|572238_574311_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276937
NC_014501.1\|WP_013320648.1\|544915_546655_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_014501.1\|WP_013320662.1\|575082_575454_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933104.1\|551777_552677_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014501.1\|WP_013320652.1\|557446_558001_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320650.1\|552712_554794_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|350159
NC_014501.1\|WP_013320666.1\|578412_579054_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320653.1\|558778_559153_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320659.1\|567234_570897_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_014501.1\|WP_013320649.1\|546657_549600_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014501.1\|WP_013320665.1\|577324_578179_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933103.1\|549897_551619_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014501.1\|WP_013320657.1\|565317_566748_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320654.1\|559565_559883_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320651.1\|554786_557339_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|350159
NC_014501.1\|WP_013320664.1\|575869_576778_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871770.1\|551658_551760_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871771.1\|564426_564693_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320660.1\|570977_572237_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|284995
NC_014501.1\|WP_157871868.1\|566757_567123_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013320659.1\|567234_570897_-\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.35821e-43
NC_014501.1\|WP_041933103.1\|549897_551619_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.33293e-12
NC_014501.1\|WP_013320660.1\|570977_572237_-\|AAA-family-ATPase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	7.20909e-05
NC_014501.1\|WP_041933104.1\|551777_552677_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.13923e-13
NC_014501.1\|WP_013320651.1\|554786_557339_-\|TIR-domain-containing-protein	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.13103e-43
NC_014501.1\|WP_013320661.1\|572238_574311_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276937	cd15832, SNAP, Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family. Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.	8.91014e-06
NC_014501.1\|WP_013320648.1\|544915_546655_+\|TIR-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.48926e-12
NC_014501.1\|WP_013320649.1\|546657_549600_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.85264e-12
NC_014501.1\|WP_013320650.1\|552712_554794_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.40535e-21

>NC_014501.1|WP_013320654.1|559565_559883_+|hypothetical-protein
MISPVQSAIQIELFPIEDTIYTLIIESIPLNERVLPEWEYRLIHHETGLQVPGQFTKAQAEQIQKVTQQWDWSVDKKNKPACAAQLLQFLEQLCAPSCKKQEGQI
>NC_014501.1|WP_013320653.1|558778_559153_+|hypothetical-protein
MLTTNGFVPKPQSSDANQAIYLCTKYPLEIKPPSLSPREFCRKMFGLDGLSEVDILTAEMQPNYRKQCIALFVRVLGVKRQTIFNWGKGIDFDDMPPIHQRFLGICYERYELMAQVKRLRRFSA
>NC_014501.1|WP_013320652.1|557446_558001_+|hypothetical-protein
MNEQQQYLLQVYFQEYEKLKDEQAQRIGFRDNIIFVTIGAFGGILSFALSNKISYYALLVIPWVCLILGWIYLVNDEKISAIGRYIRITLAKKITDLIGNEGNESILGWEVAHRNDKLRKSRKIEQLIIDEITFVFSGFIALLAFLFSISKPTLAIQVLVAIEFMLLLFLAIKIFIYTDIAEGK
>NC_014501.1|WP_013320651.1|554786_557339_-|TIR-domain-containing-protein
MPSAVILTAIQVEYMAVRAYLSELREEMHPQGTIYERGKFIDNGKEWQVGIVEVGAGNAGAALEAERAIAYFNPSVILFVGVAGGIKDVTLGDVVAATKVYGYESGKAKLVFEPRPDVGISTYNLIQRAKAEARKEDWLQRLQSSVPNSSPRVFVAPIAAGEKVVASKKSAVFKFLQSNYGDALAVEMEGRGILQAAHANQQVSALIIRGISDLIEKKGEADASGSQEIAARHASAFAFEILAKFTGESIKSPISQSRTLTISSESTMMNLSTTPPKVFISYSHDSEEHKDRVLSLADRLRSDGIDCNIDQYEESPLEGWARWMLNQLEWADFVLVVCTEAYNRRFRGLEEPKKGRGVTWEGAVISQELYDAQVKSTKFIPVLFSSEDEDYIPIVIRGFSRYKLDSDEGYEMLYRRLTKQPLTTKPNLGILKTLGDRKRKQLFQDEQVSKNSDNQTPLPSVSPNFFAYDDAWVGREQLIQDLNYRIRESCRLLVLVGMTGIGKTALGERLAVELSDWFGGDWGKYYQENFDNEEQFSDFASVAARWLEKWEELITPDDRRDTQRLLYRLLKHLQENRYLVQIDSLENILQGNEEEGWSDFKDEWWVKFFNAFLKSDSCLSCIIITSQDLPRQVEEIGSRSPNFWYGQALSGLEELERLALFKKIGLEVDVNSAGKPYLERIGSAYEGHPLALRVIAGEIKNKPFNGNIIAYWNQYGSEIEEVEKAIAEAQAGKTTGEDPFKLDRFTKTLRRNVRSRLNKTFARLKEDVRYAYILLCEASVYRCPVPENFWLSHLEDWDRDAEEQKAALDVLRDRYLLEELVEENQCLLRQHNLIRSVSLEHLKQLEDEDE
>NC_014501.1|WP_013320650.1|552712_554794_-|tetratricopeptide-repeat-protein
MNNLIPPSELILKELGIDRITIKSLDSIKRANYRSVINWLTKYKAKSDASNLEQIRGYLEAFYHLCNIEEWDKASKLLSIRLNTPTNEELHKQLKTWGYYQEQIEIYQIIFKKIARHWDAICLEGLGNAAFAGGNIKESIEYHQKQLEIAQNFLDQERQISALIGSANSFKFLGKYDEATKYYLKILEIAFQIANKQGKMMALGGLGNIQTYLGHYGIAIEYHQQQLNITKDISDNLGKIDALLGLGQAYLYLKNYSKALDSYENSLEIAKKIENKHLELKAISGLGRTYYELEKYELATHYYEKIKKNAREISLPLEEAEAIANLAIVQRELNKNSPENLEKITNSLNESLSIFNEAGNPLQIAGILKELAKTYDCLGDIKTAKKYCQQALEIAIDLKLSLRDECDELITKYSINIDQNKIQLIKTKEIDKNQCESLKNEIDVVIITATGVELKAVLDLLKPYPRRNNSYVFKVFDKFGTYYLGKFGSYKTVVTKCRMGSTEENASKDVTREALRMWKPRAIIMAGIAFGQDSNKQKIGDVLIASEIIFYEKQRVGKNSIPRSPIPPSNRTLLDRFETVHDWNFKNHDNLPFEIRVGSILSGEKLVDEPVFKAKLFNQYPQAIGGEMEGAGLCSAAISEGTAWILVKSICDWADGNKDKKYQVLAANAAASLVHHVLSQSTVLNGIKKPFYD
>NC_014501.1|WP_041933104.1|551777_552677_-|tetratricopeptide-repeat-protein
MSKQVELDVKTKKASEETSITPSGEKILAQLGINSALVKAINQGIKRSYYRAVINWLTKYKANPEDSNLKKVKGLLEAFYNLCQVEDWEEAEKLLLNTPTREELHNQLGTWGYYYQQIELYTKLIGEIIYSQNKTFLNALANAYFTVGNYDQAIHYHNQRLAQEQKSGNQEGEAIYLKNLGVVYYSIGDYISAIQLFEKSLEINKKLEDLHGEATVLGELGNVYHDKGNYIKAIKCWHKTLEIMQKFNDFQREVGSLVNLGFYTKVLIILTEQLNCFSKVLKFSVRSIIYKDKGKRLTT
>NC_014501.1|WP_157871770.1|551658_551760_-|hypothetical-protein
MENYDKALELYQKRLKIAKRSGELEGELVATGN
>NC_014501.1|WP_041933103.1|549897_551619_-|tetratricopeptide-repeat-protein
MSKIALSGELLLQNIQINSKIIKTIKPHWKRTYYRAVINWLTKYKPSQDGSNLDQIKGYLEAFYHLSEVEDWEKAMKIFSTRLNTPTNDELHNQLNIWGYYQQQIELYKKTLGKIDTNFDTILLNGLGNLYNSLSDYHQAIECQQQHLNIAKSIGDRLGEGIALGNLGLNYYYLGNYLKSIEYSQESLIIVWELKQRREAGAALGNLGLAYKALGDYQKAIKFQNLRLAITREIGDRTGEAQSLGNLGVLYNSLGNYTQALEYHQQCLAIAKEIGDRLGEEQALGNLGISYQNLGQYAEAINCHEQSLAIAREIGNRLEESSSLGNLGNIYISLGQYTKAIEYHQNGLVISRGVGDLSGEAACLGSLGIVYDTLGDYEQSIEYHQQQLAIFQEIEDRHGEGVALGSLGNAYFSLEDYDKAVDYYQQRLEIAQEIGHRGGEGFALLSLGNVYFSQENYEEAGKFYQQRLTIAQEIGDRWGEGNALCNLGATFIRLNEYTQALKYLQSSLEICQEIKTPYTEAKVLQNLAAVYRKLDEPKLALEYCDRALFLATELGISLAQECQEFKELLLSEQ
>NC_014501.1|WP_013320649.1|546657_549600_+|tetratricopeptide-repeat-protein
MKSEKSALLSVKPIISYPREAQAGKTYLMTIDLEVEEGFEWQYEEEEYPIFCQVDSDFFKVKSVDESVLVLHRFGGSYGEVRFLLTAGQKEAKGRIRVILINKWGVPVKVFYLEDVQITTKEEIRSVIEIESRKPINLTSQEEAYQPAIASKLSDVNQKFITELVSRNFFAYDEAWVGRESLVQELCNRLRESCRLLLLVGMTGIGKTALGEKLALDLEDWFKGDWSKYYQVNFDNEEKSSDFASVAAQCLEKWGELITPDARNDTHRLLYRLLKHLQENRYLIQIDSLENILQGNEEEGWSDFKDEWWVKFFTAFLNSDSCFSCIIITSQDLPRQIVEIGSRFTNFWYCQALSGLKEQERLALFEKIGVDISPESVSRPYLERIGIAYEGNPLALRVIAGEIKNQPFNGNVIAYWNKYGSEIEEVEKLLAEAQTGKTIGEDSFKLDRFTKTLRRNVRSRFNKTFARLKEDATYAYILLCEASVYRCPVPEEFWLSHLEDWDRDEDEQLAALDILRDRYLVEELVDNDRWLLRQHNLIRSIALEHLKQLDSDEEKIEIDSIELNSLPTQSDVEKAILSEIRATLLSNPNITHLQRINYRAVVNWLTHYKPIENSSRIEQVKGYLEAFYHLCEVEAWEAAYKILSLQIDTPTEEELLEQLGTWGYYQVQVEICTILLQHLSQSIDIKLYNCLGNANYIFGKYSAAIEIFHQSLNIAHKINDRKNESIALVYLGLTYNSLGQYQQAIELYHQALAISKNIRDIRGESHILGNLGLTYHYLGQYQHAISYHLQYLRIAREIGDRRGEGTALGNLGNAYCGLQDYQLAINLYRQYLMIAKEIDDRRGVGIALGNLGNAYLDSREYEQAIYYLEEALVILREINDRQGEGFVLGHLGNTQIKLEQYDEALENLQTSLTIFQEIDSRAGVSESLKNLAELHHKINQPQQAQKYYEQALQIATDLGIPLVQEIQDSMKSLTQENESS
>NC_014501.1|WP_013320648.1|544915_546655_+|TIR-domain-containing-protein
MSGDFWGQITKREGVKQSSSLPSELKQASSPKASKNDALEKVEGGQIIPQVFISYTHDSEEHKDRVLSLANRLRSEGIDCNIDQYEQSPSEGWLRWMLNQLELADFVLVVCTEIYNRRFRGLEEAQKGQSVTWQGAVISQEMYDDFGENTKFIPVVFATEYEEYIPFVIKGFTCYKLDSEKGYESLYRHLTKQPEIIKPDLGKLRNLPHRKRESLFQESSTIGKYSEEITFIDLEEKFPSNVAILYVLEQENNYFLRLHNIAWDNPKETETSPPPPITLSQLINSQQRASEILGQLQRYRSRCPIGKLLGWLRELEELSDLIINDGTDFVIPWEMLPLRQQPLGIRVNLIRWLDIPDLENWDKIYSIPSPQSSADCCQGDVLIYAKTEELEEIKSLKSYQSVCFSENQAFLTHLKEKKETIGLVYIARHGFLETTFSQKILSYDSFNCYLQGIEFSSYYSSIIFMNACHFELIRDQFSKGYRVGFITSFLERGAKGVIGTLTEVEENYATLISQEFFQEYEKNYRLTVPQILRSLRDRIYQRLRDEPGNEDICALYFYTFMYVYYGHPNVFLKLSLAEG
>NC_014501.1|WP_157871771.1|564426_564693_-|hypothetical-protein
MAGNILPHEGDLHELIIFNNYITIEFKGVGVNLHWSIHRAIAWRANQPTAIASTSSKRLHQLSADCPWAQKWSSLVWQQGESQAVQRF
>NC_014501.1|WP_013320657.1|565317_566748_-|hypothetical-protein
MNDIDINIYAANIHSFIFQIQTGIDENFQPLYFPREWVNNTYQTIIQPFPDFTEKTLDLRKDTPKASRFSLFTESKRGLLFSSQNLNPKTNKPYRKLLVYPQQIADSYVLSLNFYIPQTAQKDNIKLEQLKEFNPDHCLQINTKLGQTFLITAFLDPNITENKEKIANQCLHHLLNLSLEEIQAKFYRKGELFNSEIIEYGNPKLDQFHALILFFAEESSSENFNKIYWELPSLLLYHHKIITAYADSRLDYHELDKKVSEIDRLISSFNSQPQENQILSSNELEDFNQKLKQLLNLSLDYSRKLRNLEYYQNTIAIHSSNYQTKLNYLQKLTNNNLDFFASLCGEEWTTLQTQIKADLNYFHQGTIILNQGIETIRGLIEIDQAKSDRLKEAREKEKDIRLQITILAIGSGLAVAGIVATSYPLITPENPLLPPSFRPLHPFSTSVILSLICAILAYLLIELIAIIIRKFKKFKA
>NC_014501.1|WP_157871868.1|566757_567123_-|hypothetical-protein
MDESTKTLLVFVKLIKDRNSIFSADAWQDLANLDKNLAQLETEEDFEIADTILDWCEQHPDIQTTLSETCQNIRVRADIVENEEQLKEIYNLRQEGQMIGNKSLVRQTIQSTIKQPPPTTK
>NC_014501.1|WP_013320659.1|567234_570897_-|CHAT-domain-containing-protein
MDEARLQAYVNLIEQLLNCPQGDEPKILQANEELLDEGLLQVMESYAAWLEEQGNKNNADWLRNWALSLGEYLNRQEVNIEEYQKFLQEVLQAEYESKSNVAVVYPILERHQHLLNDTFAQVLQQWARNVFSGSNTEEAAAFAGVIQNLCNKFQQFPRGSRANNLEIAITGYLTLLELYTREAFPVDWATTQNNLGAAYSDRIRGERAENLELAIAALNLSLEVYTRDAFPEDWARTQNNLGAAYNYRIRGERAENLELAIAALNQSLEVYTRDAFPEDWATTQNNLGAAYNYRIRGERAENLELAIAAYNQSLEVYTRDAFPEDWARTQNNLGLAYNYRIRGERAENLELAIAALNLSLEVLTRDAFPYEWAGTQTNLGLAYNYRIRGERAENLELAIAALNQSLEVLTREAFPVEWARTQNNLGIAYLYRIRGERAENLELAIAALNQSLEVYTRDAFPEDWARTQTNLGNAYKNHIRGERAENLKLAIAAYNQSLEVYTREAFPEDWARTQNNLGIAYLDRIRGESAENLELAIAAFNQSLEVYTRAAFPYEWATTQINLGIAYSDRIRGERADNLELAIAAFNQSLEVYTRDAFPYEWATTQNNLGLAYNYRIRGERAENLELAIAAYNHSLEVRTPITFPIDCLQTGRNLGNAATLKKDWETARIGYSRAIAAVEQSRQWAKTHHSKGEIQADAIDVYHKMIEVCLKDNLFDLAFTTVESNKSRYLVELLDSINVPIPENTTDSQRPLYDEYMKLRRQLDISGLEFKETKEDKEHLSRDRLRLQELLNQIQIFDPDFTLTQRVEPIKLKTIQSILDENTVIWEWYISSDRFYTFIITHNSIDVVVSNRDELDILRNWAKDYLTDYRQKGWESNLPEKLGKLEDTLLLPQVLAKTPHDCNHLILIPHQYLHLIPIHAISPLQQRFTDGIQYIPSCQLLHRLHQKSFNRESPSRLRYFFGLQNPTEDLTYSDVEVETIQQKFNPNIFILKGKEATKNKFIHPDTIKNLRESSFVHFACHGGYNFKSPLESALLLAGSIETEQTAINREEETSILTLRDGNRGNTKEGLTLRDIFEKINLSQCYLVALSACETGITGFSKEIDEYIGLGSGFLYAGSLHVINSLWSVGDFPTALLMIHFYQLLLDESHSLSVCQALQKTQQWMQTATRQDIINWVKTLNISNEKLIKDIATCLRRDYPNPPFNHPIYWAAFCSLGNIS
>NC_014501.1|WP_013320660.1|570977_572237_-|AAA-family-ATPase
MSRLKKHNSSLEKWGLKENPFRPTPPNDPEKVAQIFYGRDQALDVAIPTLYEGRNILVRGAWGIGKTSLIFNLIYQLQREVAELDDNEKMLILYLSSIPGESATEFYRALLLAIADSLADLDQEAQDIANTILGFSIQRTKTINEGQVKLGVLSFGRREESPSNKLTPTANADPYPLLIRLLNQAEKKYSRLVIAIDDFDKKDPIVVQNILEGSLDLFRMGKNRGFIMTGRGFTDLQEATLKALGIFSEDIPLEKMSQDALRQIAINYLNSARKEPRNDPHPFTEEVMQLITNYAQGVPRQLNTICEKVLRNAASEGCEIIDQTAFSSIWQTLQQEFTYSLSPMFRHLLYVAYQAGGISEDISDRDLDKLDVVTFVALYPQLKSMEEQGLLIRQEDEKGFRFTPSQLFEPKFLPESKSE
>NC_014501.1|WP_013320661.1|572238_574311_-|tetratricopeptide-repeat-protein
MDEARLQPYVNLIEQLLNCPQGDEPKILQAVEELLDGKLLQVMEYSAARLEEQGDKNNADKLRNWVLSLGEYLSPQEVNIEEYLGFLQEVLQAEYESNSDPAVVYPILERHQHLLDDTFAQVLQQWARNVFSEKNTEEAATIAKVMQNLCNKIAQFPRGSRANNLEIAITGYRTLLEPYTREAFPEQWAMIQINLGNAYGNRIRGDRAQNLESAIVAFKQSLEVFTLEAFPEQWAMIQNNLGSSYNKRIRGERVENLELAIAAFNCSLKVCSREAFPEQWATTQNNLGNAYSERIKGERANNIELAIAAYNQSLEVYTREAFPYEWARSQNNLGTAYGERIRGKKANNIELAIVAFNRSLEVYTREAFPSEWARSQNNLGITYLYRILGERAENLEKAIAALHRSLEVYTRDAFPEDWARIQNNLGAAYKNRNRGDEAENIERAISCYQESLKVRTINAFPIDWATTQNNLGNAYSSRIKGDKAENIELAITCYQEALKIYTREGFPMDWAETQYNLGNTFKELFKLLGKVEDITQAITAYKQARLIFQEIEDEQLFLDCLYQLSKALLEGGYYTEAIENLKICQQSHQEKKNIKSLAPILFDLAYLYHRTGRLEQSRLYFKDSLRLFRRLDDKENIASVTIALGNLEIQIGQISQALTHLKEAEKFYLENHNRERLQEINYLLDIIQSS
>NC_014501.1|WP_013320662.1|575082_575454_+|hypothetical-protein
MAQNFSKPTSSSCCQSCPFFEDYQDEGGRGWCHAFNQSARRHHPKTHDCELISMEPPKTVKVQLHSKAVEEDCGYAVPVDSVVIDLKVNEITRNAIETALQSLFDLSEWVVADFWQPELESVF
>NC_014501.1|WP_013320664.1|575869_576778_-|hypothetical-protein
MNQFLAKAFNLPTTTVSLSIAAVFFNLSATAATFTPFSFVTNVTASPNLSSNPNLLNDPTLDVRLDSVSWGGITVNNFEVVSTGRVLQNDTYFNTADGNTYGILHSGHGPNTESDPLVEEGPAKPNPSDLDIANSLGNLNLNSLLVTRENGNTASIEVSFANPVNTFFFWERGGTPGSSVAGDSDLLVEALSDDGSTVLATYKILRANYTKAGYNISTIVPPVLNNGPFNIGSIGISLGDITTKTLRLTSTNNNLGAANGDNGPDFKVVAANVTVPEPGSLMALLLATVLGGLHKSKNWKSD
>NC_014501.1|WP_013320665.1|577324_578179_+|hypothetical-protein
MSNISIYHLSEDIRSEFTIDEQGRAFASRRAVARLAGVDVSSVVRLVQKISDGQNVSEIFESFTGQVFEGDALSDILVALILEYYAYEAKERYRTQQAKQVCRAFRAIGFRTWVQQELGWQKSMSQAEYLLSVAQQFVEQERQLKLVQSQVNTVESQVEVLTEQTSQIKKAQESQDEVLLSLVAIQKQAESDLEIIPFSAEQAQQMSVRDKVVLLVRTYCYSSGVAYKDFFSHLYCQFKYRYHYDVKARSRNKRTSLIDQVEKDGMIDALYAVASEIIQAKIGA
>NC_014501.1|WP_013320666.1|578412_579054_+|hypothetical-protein
MLPRRKKRSTPEDIKPLPPKIPGSIASMERAIVLLGNRVQNELNPKSRQELIELIDIYPDANTAATWKQALRQLIKDKQQSSSNSLQQIAQINPETSIIFSWLKEALSELYWEEKNAYDPELAKQMSVWYKKCPPQNSPKTYLVKKFLELHLAWSKTEDETEFDLADLNFNLEADPLIEHELTFIEPLLRLALEKVDFEFLGDYLVKELALEI

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Crispr_ID: NC_014501_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_4

853231-853461

Orphan

Consensus_repeat	Method
CTTCCCCCAGAAATTGGGCAACT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_014501_4

>merge|NC_014501|4|853231-853461|CRISPRCasFinder
TTACCCCCAGAAATAGGAAAATTAACCGCTTTACGTTATCTAGACTTACGCAACAATAAACTGACAACTCTCCCCTCAGAAATTGGCAAACTCATTAACTTAACTTCTCTCAACCTAACCGATAATCAATTAACGGCTTTACCCCCAGAAATTGGTAAACTGAGTAATCTTAGCCGACTACATCTGAGCTACAATAAGCTAACCAGTTTGCCGCCTGAAATCGGACAACTA

>NC_014501|4|4|853231-853461|CRISPRCasFinder
TTACCCCCAGAAATAGGAAAATT	AACCGCTTTACGTTATCTAGACTTACGCAACAATAAACTGACAACT
CTCCCCTCAGAAATTGGCAAACT	CATTAACTTAACTTCTCTCAACCTAACCGATAATCAATTAACGGCT
TTACCCCCAGAAATTGGTAAACT	GAGTAATCTTAGCCGACTACATCTGAGCTACAATAAGCTAACCAGT
TTGCCGCCTGAAATCGGACAACTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013320917.1\|838506_838962_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320921.1\|842295_845016_-\|glucosidase	unknown	unknown	gnl\|CDD\|367389
NC_014501.1\|WP_013320938.1\|865742_866630_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NC_014501.1\|WP_013320930.1\|856613_856862_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320931.1\|857253_858525_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340830
NC_014501.1\|WP_013320924.1\|849304_849499_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320926.1\|851010_852165_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320937.1\|864221_865670_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_014501.1\|WP_157871778.1\|841726_841912_-\|DUF2949-domain-containing-protein	unknown	unknown	gnl\|CDD\|371402
NC_014501.1\|WP_041933122.1\|858696_860190_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_014501.1\|WP_013320936.1\|862626_864093_+\|DUF4115-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NC_014501.1\|WP_013320927.1\|852389_852992_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_014501.1\|WP_013320919.1\|840358_841456_+\|RRXRR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379519
NC_014501.1\|WP_013320935.1\|861267_862230_-\|ribonuclease-HI-family-protein	unknown	unknown	gnl\|CDD\|260011
NC_014501.1\|WP_013320933.1\|860326_860593_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_014501.1\|WP_013320918.1\|839042_840161_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_014501.1\|WP_013320922.1\|845311_848872_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NC_014501.1\|WP_013320934.1\|860627_861206_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_014501.1\|WP_013320939.1\|866626_866827_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320925.1\|849571_851008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223496

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013320921.1\|842295_845016_-\|glucosidase	gnl\|CDD\|367389	pfam03200, Glyco_hydro_63, Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.	2.15597e-08
NC_014501.1\|WP_013320938.1\|865742_866630_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.71072e-19
NC_014501.1\|WP_013320937.1\|864221_865670_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_014501.1\|WP_013320931.1\|857253_858525_+\|glycosyltransferase	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	9.35501e-116
NC_014501.1\|WP_157871778.1\|841726_841912_-\|DUF2949-domain-containing-protein	gnl\|CDD\|371402	pfam11165, DUF2949, Protein of unknown function (DUF2949). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	1.87237e-23
NC_014501.1\|WP_041933122.1\|858696_860190_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_014501.1\|WP_013320936.1\|862626_864093_+\|DUF4115-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	3.62394e-21
NC_014501.1\|WP_013320927.1\|852389_852992_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.94808e-35
NC_014501.1\|WP_013320919.1\|840358_841456_+\|RRXRR-domain-containing-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	8.71541e-63
NC_014501.1\|WP_013320935.1\|861267_862230_-\|ribonuclease-HI-family-protein	gnl\|CDD\|260011	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Most archaeal genomes contain only type 2 RNase H (RNase HII); however, a few contain RNase HI as well. Although archaeal RNase HI sequences conserve the DEDD active-site motif, they lack other common features important for catalytic function, such as the basic protrusion region. Archaeal RNase HI homologs are more closely related to retroviral RNase HI than bacterial and eukaryotic type I RNase H in enzymatic properties.	1.06209e-58
NC_014501.1\|WP_013320933.1\|860326_860593_-\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	5.25615e-20
NC_014501.1\|WP_013320918.1\|839042_840161_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_014501.1\|WP_013320922.1\|845311_848872_+\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NC_014501.1\|WP_013320934.1\|860627_861206_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.65851e-52
NC_014501.1\|WP_013320925.1\|849571_851008_-\|hypothetical-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0.000971457

>NC_014501.1|WP_013320927.1|852389_852992_+|Uma2-family-endonuclease
MTAAQQQYYSIEDYLQVEESADYKSEYIDGQIIPMAGGTTNHNQIAGNFYSELNFAFKKLDYRVYMSDVRLWIPERRIFTYPDVMVVAGEPEYYPNRTDMILNPCLIIEVLSQSTQNHDRQGKFESYRTIPTFQEYLLIDQTRIYAEQFYKTAKKRWSLSEYDQEDEAISLNSVNFKISLIDIYNKVTFEAAPIEIQETE
>NC_014501.1|WP_013320926.1|851010_852165_-|TerB-family-tellurite-resistance-protein
MIWDSISQKASELGQAINTTAKNATQTVTDKAFWESVTQKATELGNTTTQVTQIVAQHATQAGNEIGNVVAKATQATQAISGSNNEQDKLNQPLDLAQVPENERLAFYGALFAIATADGSFDKEEMSMVFDIINLEGMSENAKRQVQSYILEAPSLLDCLKALSSADERLRFGLMINLIDTAWSNDELDPKEEEAIKLAQQELAISDEQIKAIEVFNQKMREIRKGNLDDNQAADAAKTAAAGLSAVGIPLAAVYFSGSVIGLSAAGITSGLAALGALIGIGGMVPGIGVAVLLGAGIFTGVNWFLDTGDKRKKDEIKAEQERKAQLVIENLQTALSQVTERIEALQKAAADSETNREAIKILTQKLKTLQQLINNRKQDKQEI
>NC_014501.1|WP_013320925.1|849571_851008_-|hypothetical-protein
MISDHLVIELRAVLQVQNQILRQFDQAVSETEEKLSDVSQQAQQIAELEKLMAEIESSIDWLEEEDLNDFEAYEILQLYERRQASVSQELVKIGFKDWNSFVRQCQNYCLQEGLEPLAPYEAMLTEKDLQKLKDESYNAQFKWDKWDYIFVGASGVLAALTDFLVVRIPASINSGQYAGQLGSPLTAWLKQYNMNNANDWFAQWAKELEKTCKTPYDNQSLLGGMSPNSHRFQSLGHDPVLGFVFGVLDIMKGTITGFSYDKLTGNHLFVNAVVRPDYEPVGLIEAFLKHLGHLVSDVATPQGLPVPFMSLFQGLNINSFWKEDRTIAETARRMYLDGYDFRHFLVSGITPGVIEMILRAYMMLRHYSEGKETNLSINSHPKYRSMLLAAHTIAALGNAGKIALMQNNPLAINPAQWLALLRYLIPSVKYWLFDQHRFRLEHQNKINEEGWNNLLNNSDALLEVVCKSESSLIQLGTI
>NC_014501.1|WP_013320924.1|849304_849499_+|hypothetical-protein
MDDHEILIKGIEALNKSLGFAATLRFLTLFNQSSTDYVEVSQRLYEGQTIEEIFERAKKNRKDE
>NC_014501.1|WP_013320922.1|845311_848872_+|methionine-synthase
MNSPFLNRLHSLERPVLVFDGAMGTSLQSQNLTAEDFGGPEYEGCNEYLVHTKPEAVAKVHQGYLEAGADVIETDTFGGTSIVLAEYDLADQAYYLNKTAAQLAKQVAQQYSTPEKPRFVAGSMGPGTKLPTLGHIDFDTLKNAYVEQAEGLYDGGADLFIVETCQDVLQIKAALNAIEEVLEKKDNRIPIMVSITMEVMGTMLIGTEIGAALAILEPYNIDILGLNCATGPEQMKEHIKYLSENSPFIISCIPNAGLPENVGGQAHYRLTPLELRMALMHFVEDLGVQIIGGCCGTRADHIKALAEITKDLKPKERHFHYEYSAASIYSTQPYIQDNSFLIVGEKLNASGSKKCRELLNKEDWDGLVSMAKAQVKEGAHILDVNVDYVGRDGVKDMKELASRLVNNVTLPLMLDSTEWEKMEAGLKVAGGKCILNSTNFEDGEPRFYKVLELAKKYGAGVVVGTIDEEGMARTAEKKFQIAKRAYEAAINYGIPPEEIFFDPLALPISTGIEEDRNNGKATVEAIKRIREELPGCHIMLGVSNISFGLNPAARQVLNSVFLHETMAVGLDGAIVSANKILPLAKIEPEYQEISRDLIYDRRRFEGDVCVYDPLTKLTEVFAGKTTKKTGADKANLPIEERLKQHIIDGERIGLEEALAEALKQYPPLDIINVFLLDGMKVVGELFGSGQMQLPFVLQSAQTMKAAVAYLEPFMEKEEGNGNAKGKFIIATVKGDVHDIGKNLVDIILSNNGYKVINLGIKQPVENIIQAYEEHKADCIAMSGLLVKSTAFMKENLAVFNERGITVPVILGGAALTPKFVHQDCQNTYKGQVVYGKDAFSDLHFMDKLMPAKAAGNWDDIKGFLDEFEAAQEPELTQVSVGVTDEDDGKTREPAVIDTRRSEAVEADIERPVPPFWGTKILTPDDIFLDEIFGYLDLQALFVGQWQFRKPREQSREEYDEFLADTVHPILESWKRRVKDENLLHPTVIYGYFPCQSEGNSLLVYDPEIIGQSGGKIPENLDPIWIIDFPRQKSGRRLCIADFFAAKGSGIVDVFPMQAVTVGEVATQFAKTLFESNQYTDYLYYHGMAVQAAEALAEWTHARIRQELGFGDKEPSNIRDILQQRYQGSRYSFGYPACPNIQDQYKQLELLGCDRINMYMDESEQIYPEQSTTAIVAYHAAAKYFST
>NC_014501.1|WP_013320921.1|842295_845016_-|glucosidase
MEAIQFSSEKLRLQEAREANLPWKKWGPYLSERQWGTVREDYSHTGNAWDYFTHDQARSRAYRWGEDGLAGISDDKQQLCFALALWNGVDPILKERLFGLTNSEGNHGEDVKEYYFYLDSTPTHSYMKYLYKYPQAAYPYNDLIQTNRQRNRLQPEYELIDTGVFDEDRYFDVFVEYAKQSPEEILIKISVWNRGPQTATLHLLPTLWFRNTWSWFPKASIKPTLKQLDACTVAAVHPILGERYLYCEGSVPLLFTENETNTERIFKIPNLSPYVKDGINHYVIEGKHDRVNPEKIGTKMAAHYVLEVPAGGVEVVRLRLSDRRLYPEENPFDSQFEEVISTRLEEADEFYNTILSPSLPNDDRNIVRQAFAGMLWTKQFYYYPVKDWLSDEILPPDCTQRYLLRNKEWFHLESSDLLSMPDKWEYPWFAAWDLAFHCVVLGLIDMDFAKAQLKLMTNQVYLHPNGQIPAYEWNFSDVNPPVHCMATWQIYLMDKAERGGKGDRHFLESMFHKLLMNFTWWVNRKDELGNNVFEGGFLGLDNIGVFDRSAPLPSGGMLEQADGTSWMAMFCLDMLSIALELSLENSVYEELACKFYEHFIHIAAAMDQIGINHDELWDEEDGFFYDVLRFPHGDAQRLKVRSMVGLIPLFACAVFSTEVLEKLPNLAKRMQYFNQQNEKLMVNISDPRKPGVGDKRLLSPINEDKLRRILQKMLDESEFLSDYGIRALSRYHHDHPYIFNMEGNIYRVDYEPAESSTGLFGGNSNWRGPIWMPVNALLIQSLRKMYSYYGDEFKIECPTGSGQWMTLWEVADEISHRLCKIFEKNEQGRRPVYGDSEKFQSDPHWQDLILFYEYFHGDNGAGLGANHQTGWTGLVAKWFLADGDLNRQKALDEECSSVMCSLFVQT
>NC_014501.1|WP_157871778.1|841726_841912_-|DUF2949-domain-containing-protein
METNRLLNRFLQEDLGIPQESVEMATRYASSQAGSLPMVLWQYGLIDLNQLDRVFDWMEAI
>NC_014501.1|WP_013320919.1|840358_841456_+|RRXRR-domain-containing-protein
MLRVPVIAPNKTPLMPTKCSRARRWIKEGKALGRFNDLGQFYLQLIEQPSDNKTQPIAIGIDPGKFFSGIGVQSSLFTLWKAHLELPFQRVRERIDNRGLMRRSRRGRRINRKISFESRAHRQKRFSNRRQGKLAPSIKANRQLELRIISELSKIYPITDIYFEYVKADVDLTSGRKKARAGKGFSAVMVGQKWMLKQLKQFGNVHTRLGWQTCNLRKHLGLEKSKDKAKQSPESHANDGIALACFHFLDYREFHTHNSRGHDWIGKVYLTPSPFVVVKRPPISRRQLHLMVPSKGGIRRKYGGTTTDFGLRKGDLVNSPKGIGYVSGQTKKQISVSDANWKRLGQIASSKVILIQRSTGLIVSH
>NC_014501.1|WP_013320918.1|839042_840161_+|tRNA-guanosine(34)-transglycosylase-Tgt
MRFSFNCQATCSQTKARAGVWNTPHGIVETPRFMPVGTLATVKGLTPAQVQTTGAQMILANTYHLHLQPGEGIVQKAGGLHQFMAWKGPILTDSGGFQVFSLSELREIKESGVTFRSPRDGRMIEITPERSIKIQNSLGADVIMAFDECPPANATRVEVERATQRTYRWLERCIQAHERPQEQALFGIVQGGIYPDLRSEAARSLVELDLPGYAIGGVSVGEKLELIHHIVNLTAPLLPPHKPRYLMGVGTYREMVKAVAAGIDLFDCVIPTRFGRHGAAMVKGERWNLKNAQFKEDFTPLDETCPCYTCENFTRAYLNHLIKSREMLGYILLSLHNIAELVRFTQRMREAILSDRFTSEFAEWLNTSPTPR
>NC_014501.1|WP_013320917.1|838506_838962_+|hypothetical-protein
MSYEKSSHQLPAPCIIDFGTIINKDDIRRLLNDLGRVRYVHTVDGKLLSQGEGWIVEVFADPNQATIVANHKLYINVLSFDYLKIEQSTDNESYFNLIQDSRQLRLIPLTNSLLDFDASQKLDADALEAMVTQVLSARWDVQLDDDDDCPF
>NC_014501.1|WP_013320930.1|856613_856862_+|hypothetical-protein
MAIKNQSLFNHVDFLATEQFQLIGEYAQQKLLLIGKTKGYGEPIVAISTTDDPTSEELVACDLYELMKCSDHAVNISQLAMV
>NC_014501.1|WP_013320931.1|857253_858525_+|glycosyltransferase
MFWIPTNPIALISLDSDPASLMGHEQVRGQNVYVHQVGLALAKIGWQVDIFTCGTSPSQAAITEHSPNCRTIRLETETLGLTHFDSLFNLMPELVTEFQAFEREQGFQYSLVHTNDWLSSWVGMELKKRQPLIQVHTYHCLETLKNRSVTNIPETWPTRLAIEKAALETVDRLVSTNPQQEEHLRRLVSSFGKIDLIPCGTDLNRFGAVSRTSARHQLGIVPDAKVIIYVGPFDPRKGVDILVEAIAHSRFREEEIKLIIISGSNTAKNQGIERDKLENLLKKSGLSDCTEFPGRLDQTLPLYYAAADLCVIPTQDEPFGLVALEAMASRTPVVASFEGALQFSVIPEVTGLLVKPLDPLGFTKAIDRILSHPQWRDQLGQAGRLRTEMAFSWDGVASRLSKLYSHLLTQPRTKYRQLSPVAA
>NC_014501.1|WP_041933122.1|858696_860190_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MMKLRELLTLIPTITQIPEHPALEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWSSAIEAGAIAAIISPAAALQYPPTGDAYVIQVEDVVSVCAEIAAAFYGYPARQMKMIGVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQALKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAEYLKGKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTPIGEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDISVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVVTSDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREALTVRLG
>NC_014501.1|WP_013320933.1|860326_860593_-|glutaredoxin-family-protein
MYLILYSKPGCHLCEGLLEKLQQIQTLKLEIEIRDITTQEDWFNAYQYEVPVLYQKLGNTEKIIPRPSPRMRILQLERMLQKYVTQSP
>NC_014501.1|WP_013320934.1|860627_861206_+|Uma2-family-endonuclease
MTIYTINFDPIGKLTDEQFYLLCRHNPQTKFERNAQGEIVIMSPTGGETGRYNIEIATEFVIWNRQVKLGVLFDSSTCFKLPSGADRSPDVAWIKQERWERLTPQQKEQFPPIAPDFVLELMSPSDSLKDLQKKMQEYLDNGVRLGWLINRKQRQVEIYRQGQAIEIFNAPPTLSGEEILPGFTLDLNFIWN
>NC_014501.1|WP_013320935.1|861267_862230_-|ribonuclease-HI-family-protein
MLKNYNIKTENSLPILYFDGGSRGNPGEAAGAAVLVMPDGQKYTVSEYISVATNNEAEYTGLIVGLQKAKELGIEALTVKGDSQLVINQVNRKWKVNSARMQKFYQEVQGLIKSFEKVTLDWVPRHENHLADAAVNQCIDQGETRKTSVPTQDQEPKVAEKLSPVAQLIKLGKKANLKDYTRLKSGRDEFTSLGLLELKKRVPEEIQKQIDKEWDGNDKYLAKVYRWYLRGLPPEMAIHKVRIDADVEAKVTGKHPWLEDEKTISNSQGDVKKFESSFPYAKGDVIVISEPNNALKHQGVIVSEPKFSEEGSWMITIRVD
>NC_014501.1|WP_013320936.1|862626_864093_+|DUF4115-domain-containing-protein
MNKLNSSQAKQLREVAAYLKQKRIEQSLSLEQIASRTFIRLHILEALEAAQIEQLPELIYIQGFIRRYGEVLRIDGNSLAKRLTQTDNAVAFETPSAPSAVKAPPQPEPVVKAPPQPKPVVKAPPQPEPVIKAPPQAQRVVKTQAQRVIKAQPQAEPVLKAQPQAEPVLKAQPQAEPVLKAQPQAEPVLKTQPQAEREPQSPLLQLEPSIKPTLQRYGVLIAIIACIGTSIALLYGLSRSREPYTVGKSVSPNPSTQPHHTTPPASSTVTKPTPASRERVPDPSRVVTTSPPPVKTYPEKTMIQSSPLAVSPSPQKSSTPPSPVAASPSPQKSSTPPSPVAVSPSPQKSSTPPSPVAASPSPQKSATPPSPVAASPSPQKSATSPSPVASPASSAKKPSNAPLSVALALDGTSWLKVLVDGKTQYEGTLEAGVKQNWTAQEKVTIIAGNAGAVTYSVNSKPAQRLGEAGEVKEIKLTPVDNLKPTPTP
>NC_014501.1|WP_013320937.1|864221_865670_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MASIRELHQQLVKKERSAVEITTEALERIEALEPSLHSFLYITADQALETAKKVDAKIAAKQEIGLLEGIPIAIKDNMCTQGIPTTCGSKILENFVPPYESTVTQKLKELGTIALGKTNLDEFAMGSSTETSGYQVTANPWDLSRVPGGSSGGSAAAVAAEEAVVALGSDTGGSIRQPASYCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARTVEDAAIFLGAIAGYDPKDSTSLNIEIPDYTKFLKPKLSKLKIGIIKETFGEGLDPVVGEAVHQAVEQLKKLGAKIKEISCPRFRYGLPAYYIIAPSEASANLARYDAVKYGIRKDADTLMSMYTGTRASGFGTEVKRRIMLGTYALSAGYYDAYYLKAQKVRTLIKQDFDQAFEEVDVLVCPTAPTTAFKAGEKTDDPLSMYLSDLMTIPVNLGGLPGMSIPCGFDSLGLPIGMQLISNVLREDLLFQVAFAYENSTDWHKKKPPIK
>NC_014501.1|WP_013320938.1|865742_866630_+|alpha/beta-fold-hydrolase
MVINFWIKLLLKGLGLGVIAYLLICIALWIWQKRLIFSPSSRIKSTPSDLGLAYSQVWIPVLTWEGKLEKMHAWWIPSESSSSEVLLYLHGNGVNMGANLGPIEKFHQMGFNVLMIDYRGYGRSEGKFPSESEVYRDAQAAWDYLVLKQKIAPEAIFIFGHSLGGAVAIDLAVRKPNAAGVILESAFTSMVDMIDHLPLYRFIPAKLVLNQRFDNLSKLKLLRVPLMLIHGTQDCTVPPSMSQVLYDLAPVPKQLLFIPLAGHNDVSRVGGEDYIQGLENFRQLALTHQRQLAER
>NC_014501.1|WP_013320939.1|866626_866827_-|hypothetical-protein
MEITVDCARDCINGCILKEKCPHREHLAQTEKFIQETSLDKMLEMAEAARLKKLTEPPKWVIPDDF

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Crispr_ID: NC_014501_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_5

853645-853943

Orphan

Consensus_repeat	Method
CTTCCCCCAGAAATTGGGCAACT	CRISPRCasFinder
CTCCCCCCAGAAATCGGACAACT	PILER-CR

4 spacers

The CRISPR arrays of NC_014501_5

>merge|NC_014501|5|853645-853943|CRISPRCasFinder,PILER-CR
CTACCGCCTGAAATTGGACAACTAAACAGTTTAAATCAGCTAGATGTCGGCTACAATCAACTGACAACCCTTCCCCCAGAAATTGGGCAACTTCTCAATCTTATCTCCATCGATGTTAGTTACAATAAACTCACCTCACTTCCCCCAGAAATTGGACAACTCCTTAACCTTGATTCCCTTACCATCAGTAACAATCAACTGACAATACTCCCCCCAGAAATCGGCTATTTAAGTAACCTCATTTCCCTTAATCTCAGTTATAATAAACTATCAAGTCTCCCCCCAGAAATCGGACAACT

>NC_014501|5|5|853645-853943|CRISPRCasFinder
CTACCGCCTGAAATTGGACAACT	AAACAGTTTAAATCAGCTAGATGTCGGCTACAATCAACTGACAACC
CTTCCCCCAGAAATTGGGCAACT	TCTCAATCTTATCTCCATCGATGTTAGTTACAATAAACTCACCTCA
CTTCCCCCAGAAATTGGACAACT	CCTTAACCTTGATTCCCTTACCATCAGTAACAATCAACTGACAATA
CTCCCCCCAGAAATCGGCTATTT	AAGTAACCTCATTTCCCTTAATCTCAGTTATAATAAACTATCAAGT
CTCCCCCCAGAAATCGGACAACT

>NC_014501|5|1|853714-853943|PILER-CR
CTTCCCCCAGAAATTGGGCAACT	TCTCAATCTTATCTCCATCGATGTTAGTTACAATAAACTCACCTCA
CTTCCCCCAGAAATTGGACAACT	CCTTAACCTTGATTCCCTTACCATCAGTAACAATCAACTGACAATA
CTCCCCCCAGAAATCGGCTATTT	AAGTAACCTCATTTCCCTTAATCTCAGTTATAATAAACTATCAAGTCTCCCC
CCAGAAATCGGACAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013320917.1\|838506_838962_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320921.1\|842295_845016_-\|glucosidase	unknown	unknown	gnl\|CDD\|367389
NC_014501.1\|WP_013320938.1\|865742_866630_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NC_014501.1\|WP_013320930.1\|856613_856862_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320931.1\|857253_858525_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340830
NC_014501.1\|WP_013320924.1\|849304_849499_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320926.1\|851010_852165_-\|TerB-family-tellurite-resistance-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320937.1\|864221_865670_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_014501.1\|WP_157871778.1\|841726_841912_-\|DUF2949-domain-containing-protein	unknown	unknown	gnl\|CDD\|371402
NC_014501.1\|WP_041933122.1\|858696_860190_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_014501.1\|WP_013320936.1\|862626_864093_+\|DUF4115-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NC_014501.1\|WP_013320927.1\|852389_852992_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_014501.1\|WP_013320919.1\|840358_841456_+\|RRXRR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379519
NC_014501.1\|WP_013320935.1\|861267_862230_-\|ribonuclease-HI-family-protein	unknown	unknown	gnl\|CDD\|260011
NC_014501.1\|WP_013320933.1\|860326_860593_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_014501.1\|WP_013320918.1\|839042_840161_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_014501.1\|WP_013320922.1\|845311_848872_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NC_014501.1\|WP_013320934.1\|860627_861206_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_014501.1\|WP_013320939.1\|866626_866827_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320925.1\|849571_851008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223496

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013320921.1\|842295_845016_-\|glucosidase	gnl\|CDD\|367389	pfam03200, Glyco_hydro_63, Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.	2.15597e-08
NC_014501.1\|WP_013320938.1\|865742_866630_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.71072e-19
NC_014501.1\|WP_013320937.1\|864221_865670_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_014501.1\|WP_013320931.1\|857253_858525_+\|glycosyltransferase	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	9.35501e-116
NC_014501.1\|WP_157871778.1\|841726_841912_-\|DUF2949-domain-containing-protein	gnl\|CDD\|371402	pfam11165, DUF2949, Protein of unknown function (DUF2949). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	1.87237e-23
NC_014501.1\|WP_041933122.1\|858696_860190_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_014501.1\|WP_013320936.1\|862626_864093_+\|DUF4115-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	3.62394e-21
NC_014501.1\|WP_013320927.1\|852389_852992_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.94808e-35
NC_014501.1\|WP_013320919.1\|840358_841456_+\|RRXRR-domain-containing-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	8.71541e-63
NC_014501.1\|WP_013320935.1\|861267_862230_-\|ribonuclease-HI-family-protein	gnl\|CDD\|260011	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Most archaeal genomes contain only type 2 RNase H (RNase HII); however, a few contain RNase HI as well. Although archaeal RNase HI sequences conserve the DEDD active-site motif, they lack other common features important for catalytic function, such as the basic protrusion region. Archaeal RNase HI homologs are more closely related to retroviral RNase HI than bacterial and eukaryotic type I RNase H in enzymatic properties.	1.06209e-58
NC_014501.1\|WP_013320933.1\|860326_860593_-\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	5.25615e-20
NC_014501.1\|WP_013320918.1\|839042_840161_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_014501.1\|WP_013320922.1\|845311_848872_+\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NC_014501.1\|WP_013320934.1\|860627_861206_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.65851e-52
NC_014501.1\|WP_013320925.1\|849571_851008_-\|hypothetical-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0.000971457

>NC_014501.1|WP_013320927.1|852389_852992_+|Uma2-family-endonuclease
MTAAQQQYYSIEDYLQVEESADYKSEYIDGQIIPMAGGTTNHNQIAGNFYSELNFAFKKLDYRVYMSDVRLWIPERRIFTYPDVMVVAGEPEYYPNRTDMILNPCLIIEVLSQSTQNHDRQGKFESYRTIPTFQEYLLIDQTRIYAEQFYKTAKKRWSLSEYDQEDEAISLNSVNFKISLIDIYNKVTFEAAPIEIQETE
>NC_014501.1|WP_013320926.1|851010_852165_-|TerB-family-tellurite-resistance-protein
MIWDSISQKASELGQAINTTAKNATQTVTDKAFWESVTQKATELGNTTTQVTQIVAQHATQAGNEIGNVVAKATQATQAISGSNNEQDKLNQPLDLAQVPENERLAFYGALFAIATADGSFDKEEMSMVFDIINLEGMSENAKRQVQSYILEAPSLLDCLKALSSADERLRFGLMINLIDTAWSNDELDPKEEEAIKLAQQELAISDEQIKAIEVFNQKMREIRKGNLDDNQAADAAKTAAAGLSAVGIPLAAVYFSGSVIGLSAAGITSGLAALGALIGIGGMVPGIGVAVLLGAGIFTGVNWFLDTGDKRKKDEIKAEQERKAQLVIENLQTALSQVTERIEALQKAAADSETNREAIKILTQKLKTLQQLINNRKQDKQEI
>NC_014501.1|WP_013320925.1|849571_851008_-|hypothetical-protein
MISDHLVIELRAVLQVQNQILRQFDQAVSETEEKLSDVSQQAQQIAELEKLMAEIESSIDWLEEEDLNDFEAYEILQLYERRQASVSQELVKIGFKDWNSFVRQCQNYCLQEGLEPLAPYEAMLTEKDLQKLKDESYNAQFKWDKWDYIFVGASGVLAALTDFLVVRIPASINSGQYAGQLGSPLTAWLKQYNMNNANDWFAQWAKELEKTCKTPYDNQSLLGGMSPNSHRFQSLGHDPVLGFVFGVLDIMKGTITGFSYDKLTGNHLFVNAVVRPDYEPVGLIEAFLKHLGHLVSDVATPQGLPVPFMSLFQGLNINSFWKEDRTIAETARRMYLDGYDFRHFLVSGITPGVIEMILRAYMMLRHYSEGKETNLSINSHPKYRSMLLAAHTIAALGNAGKIALMQNNPLAINPAQWLALLRYLIPSVKYWLFDQHRFRLEHQNKINEEGWNNLLNNSDALLEVVCKSESSLIQLGTI
>NC_014501.1|WP_013320924.1|849304_849499_+|hypothetical-protein
MDDHEILIKGIEALNKSLGFAATLRFLTLFNQSSTDYVEVSQRLYEGQTIEEIFERAKKNRKDE
>NC_014501.1|WP_013320922.1|845311_848872_+|methionine-synthase
MNSPFLNRLHSLERPVLVFDGAMGTSLQSQNLTAEDFGGPEYEGCNEYLVHTKPEAVAKVHQGYLEAGADVIETDTFGGTSIVLAEYDLADQAYYLNKTAAQLAKQVAQQYSTPEKPRFVAGSMGPGTKLPTLGHIDFDTLKNAYVEQAEGLYDGGADLFIVETCQDVLQIKAALNAIEEVLEKKDNRIPIMVSITMEVMGTMLIGTEIGAALAILEPYNIDILGLNCATGPEQMKEHIKYLSENSPFIISCIPNAGLPENVGGQAHYRLTPLELRMALMHFVEDLGVQIIGGCCGTRADHIKALAEITKDLKPKERHFHYEYSAASIYSTQPYIQDNSFLIVGEKLNASGSKKCRELLNKEDWDGLVSMAKAQVKEGAHILDVNVDYVGRDGVKDMKELASRLVNNVTLPLMLDSTEWEKMEAGLKVAGGKCILNSTNFEDGEPRFYKVLELAKKYGAGVVVGTIDEEGMARTAEKKFQIAKRAYEAAINYGIPPEEIFFDPLALPISTGIEEDRNNGKATVEAIKRIREELPGCHIMLGVSNISFGLNPAARQVLNSVFLHETMAVGLDGAIVSANKILPLAKIEPEYQEISRDLIYDRRRFEGDVCVYDPLTKLTEVFAGKTTKKTGADKANLPIEERLKQHIIDGERIGLEEALAEALKQYPPLDIINVFLLDGMKVVGELFGSGQMQLPFVLQSAQTMKAAVAYLEPFMEKEEGNGNAKGKFIIATVKGDVHDIGKNLVDIILSNNGYKVINLGIKQPVENIIQAYEEHKADCIAMSGLLVKSTAFMKENLAVFNERGITVPVILGGAALTPKFVHQDCQNTYKGQVVYGKDAFSDLHFMDKLMPAKAAGNWDDIKGFLDEFEAAQEPELTQVSVGVTDEDDGKTREPAVIDTRRSEAVEADIERPVPPFWGTKILTPDDIFLDEIFGYLDLQALFVGQWQFRKPREQSREEYDEFLADTVHPILESWKRRVKDENLLHPTVIYGYFPCQSEGNSLLVYDPEIIGQSGGKIPENLDPIWIIDFPRQKSGRRLCIADFFAAKGSGIVDVFPMQAVTVGEVATQFAKTLFESNQYTDYLYYHGMAVQAAEALAEWTHARIRQELGFGDKEPSNIRDILQQRYQGSRYSFGYPACPNIQDQYKQLELLGCDRINMYMDESEQIYPEQSTTAIVAYHAAAKYFST
>NC_014501.1|WP_013320921.1|842295_845016_-|glucosidase
MEAIQFSSEKLRLQEAREANLPWKKWGPYLSERQWGTVREDYSHTGNAWDYFTHDQARSRAYRWGEDGLAGISDDKQQLCFALALWNGVDPILKERLFGLTNSEGNHGEDVKEYYFYLDSTPTHSYMKYLYKYPQAAYPYNDLIQTNRQRNRLQPEYELIDTGVFDEDRYFDVFVEYAKQSPEEILIKISVWNRGPQTATLHLLPTLWFRNTWSWFPKASIKPTLKQLDACTVAAVHPILGERYLYCEGSVPLLFTENETNTERIFKIPNLSPYVKDGINHYVIEGKHDRVNPEKIGTKMAAHYVLEVPAGGVEVVRLRLSDRRLYPEENPFDSQFEEVISTRLEEADEFYNTILSPSLPNDDRNIVRQAFAGMLWTKQFYYYPVKDWLSDEILPPDCTQRYLLRNKEWFHLESSDLLSMPDKWEYPWFAAWDLAFHCVVLGLIDMDFAKAQLKLMTNQVYLHPNGQIPAYEWNFSDVNPPVHCMATWQIYLMDKAERGGKGDRHFLESMFHKLLMNFTWWVNRKDELGNNVFEGGFLGLDNIGVFDRSAPLPSGGMLEQADGTSWMAMFCLDMLSIALELSLENSVYEELACKFYEHFIHIAAAMDQIGINHDELWDEEDGFFYDVLRFPHGDAQRLKVRSMVGLIPLFACAVFSTEVLEKLPNLAKRMQYFNQQNEKLMVNISDPRKPGVGDKRLLSPINEDKLRRILQKMLDESEFLSDYGIRALSRYHHDHPYIFNMEGNIYRVDYEPAESSTGLFGGNSNWRGPIWMPVNALLIQSLRKMYSYYGDEFKIECPTGSGQWMTLWEVADEISHRLCKIFEKNEQGRRPVYGDSEKFQSDPHWQDLILFYEYFHGDNGAGLGANHQTGWTGLVAKWFLADGDLNRQKALDEECSSVMCSLFVQT
>NC_014501.1|WP_157871778.1|841726_841912_-|DUF2949-domain-containing-protein
METNRLLNRFLQEDLGIPQESVEMATRYASSQAGSLPMVLWQYGLIDLNQLDRVFDWMEAI
>NC_014501.1|WP_013320919.1|840358_841456_+|RRXRR-domain-containing-protein
MLRVPVIAPNKTPLMPTKCSRARRWIKEGKALGRFNDLGQFYLQLIEQPSDNKTQPIAIGIDPGKFFSGIGVQSSLFTLWKAHLELPFQRVRERIDNRGLMRRSRRGRRINRKISFESRAHRQKRFSNRRQGKLAPSIKANRQLELRIISELSKIYPITDIYFEYVKADVDLTSGRKKARAGKGFSAVMVGQKWMLKQLKQFGNVHTRLGWQTCNLRKHLGLEKSKDKAKQSPESHANDGIALACFHFLDYREFHTHNSRGHDWIGKVYLTPSPFVVVKRPPISRRQLHLMVPSKGGIRRKYGGTTTDFGLRKGDLVNSPKGIGYVSGQTKKQISVSDANWKRLGQIASSKVILIQRSTGLIVSH
>NC_014501.1|WP_013320918.1|839042_840161_+|tRNA-guanosine(34)-transglycosylase-Tgt
MRFSFNCQATCSQTKARAGVWNTPHGIVETPRFMPVGTLATVKGLTPAQVQTTGAQMILANTYHLHLQPGEGIVQKAGGLHQFMAWKGPILTDSGGFQVFSLSELREIKESGVTFRSPRDGRMIEITPERSIKIQNSLGADVIMAFDECPPANATRVEVERATQRTYRWLERCIQAHERPQEQALFGIVQGGIYPDLRSEAARSLVELDLPGYAIGGVSVGEKLELIHHIVNLTAPLLPPHKPRYLMGVGTYREMVKAVAAGIDLFDCVIPTRFGRHGAAMVKGERWNLKNAQFKEDFTPLDETCPCYTCENFTRAYLNHLIKSREMLGYILLSLHNIAELVRFTQRMREAILSDRFTSEFAEWLNTSPTPR
>NC_014501.1|WP_013320917.1|838506_838962_+|hypothetical-protein
MSYEKSSHQLPAPCIIDFGTIINKDDIRRLLNDLGRVRYVHTVDGKLLSQGEGWIVEVFADPNQATIVANHKLYINVLSFDYLKIEQSTDNESYFNLIQDSRQLRLIPLTNSLLDFDASQKLDADALEAMVTQVLSARWDVQLDDDDDCPF
>NC_014501.1|WP_013320930.1|856613_856862_+|hypothetical-protein
MAIKNQSLFNHVDFLATEQFQLIGEYAQQKLLLIGKTKGYGEPIVAISTTDDPTSEELVACDLYELMKCSDHAVNISQLAMV
>NC_014501.1|WP_013320931.1|857253_858525_+|glycosyltransferase
MFWIPTNPIALISLDSDPASLMGHEQVRGQNVYVHQVGLALAKIGWQVDIFTCGTSPSQAAITEHSPNCRTIRLETETLGLTHFDSLFNLMPELVTEFQAFEREQGFQYSLVHTNDWLSSWVGMELKKRQPLIQVHTYHCLETLKNRSVTNIPETWPTRLAIEKAALETVDRLVSTNPQQEEHLRRLVSSFGKIDLIPCGTDLNRFGAVSRTSARHQLGIVPDAKVIIYVGPFDPRKGVDILVEAIAHSRFREEEIKLIIISGSNTAKNQGIERDKLENLLKKSGLSDCTEFPGRLDQTLPLYYAAADLCVIPTQDEPFGLVALEAMASRTPVVASFEGALQFSVIPEVTGLLVKPLDPLGFTKAIDRILSHPQWRDQLGQAGRLRTEMAFSWDGVASRLSKLYSHLLTQPRTKYRQLSPVAA
>NC_014501.1|WP_041933122.1|858696_860190_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MMKLRELLTLIPTITQIPEHPALEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWSSAIEAGAIAAIISPAAALQYPPTGDAYVIQVEDVVSVCAEIAAAFYGYPARQMKMIGVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQALKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAEYLKGKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTPIGEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDISVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVVTSDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDYQILGTEKIHFDDREQAREALTVRLG
>NC_014501.1|WP_013320933.1|860326_860593_-|glutaredoxin-family-protein
MYLILYSKPGCHLCEGLLEKLQQIQTLKLEIEIRDITTQEDWFNAYQYEVPVLYQKLGNTEKIIPRPSPRMRILQLERMLQKYVTQSP
>NC_014501.1|WP_013320934.1|860627_861206_+|Uma2-family-endonuclease
MTIYTINFDPIGKLTDEQFYLLCRHNPQTKFERNAQGEIVIMSPTGGETGRYNIEIATEFVIWNRQVKLGVLFDSSTCFKLPSGADRSPDVAWIKQERWERLTPQQKEQFPPIAPDFVLELMSPSDSLKDLQKKMQEYLDNGVRLGWLINRKQRQVEIYRQGQAIEIFNAPPTLSGEEILPGFTLDLNFIWN
>NC_014501.1|WP_013320935.1|861267_862230_-|ribonuclease-HI-family-protein
MLKNYNIKTENSLPILYFDGGSRGNPGEAAGAAVLVMPDGQKYTVSEYISVATNNEAEYTGLIVGLQKAKELGIEALTVKGDSQLVINQVNRKWKVNSARMQKFYQEVQGLIKSFEKVTLDWVPRHENHLADAAVNQCIDQGETRKTSVPTQDQEPKVAEKLSPVAQLIKLGKKANLKDYTRLKSGRDEFTSLGLLELKKRVPEEIQKQIDKEWDGNDKYLAKVYRWYLRGLPPEMAIHKVRIDADVEAKVTGKHPWLEDEKTISNSQGDVKKFESSFPYAKGDVIVISEPNNALKHQGVIVSEPKFSEEGSWMITIRVD
>NC_014501.1|WP_013320936.1|862626_864093_+|DUF4115-domain-containing-protein
MNKLNSSQAKQLREVAAYLKQKRIEQSLSLEQIASRTFIRLHILEALEAAQIEQLPELIYIQGFIRRYGEVLRIDGNSLAKRLTQTDNAVAFETPSAPSAVKAPPQPEPVVKAPPQPKPVVKAPPQPEPVIKAPPQAQRVVKTQAQRVIKAQPQAEPVLKAQPQAEPVLKAQPQAEPVLKAQPQAEPVLKTQPQAEREPQSPLLQLEPSIKPTLQRYGVLIAIIACIGTSIALLYGLSRSREPYTVGKSVSPNPSTQPHHTTPPASSTVTKPTPASRERVPDPSRVVTTSPPPVKTYPEKTMIQSSPLAVSPSPQKSSTPPSPVAASPSPQKSSTPPSPVAVSPSPQKSSTPPSPVAASPSPQKSATPPSPVAASPSPQKSATSPSPVASPASSAKKPSNAPLSVALALDGTSWLKVLVDGKTQYEGTLEAGVKQNWTAQEKVTIIAGNAGAVTYSVNSKPAQRLGEAGEVKEIKLTPVDNLKPTPTP
>NC_014501.1|WP_013320937.1|864221_865670_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MASIRELHQQLVKKERSAVEITTEALERIEALEPSLHSFLYITADQALETAKKVDAKIAAKQEIGLLEGIPIAIKDNMCTQGIPTTCGSKILENFVPPYESTVTQKLKELGTIALGKTNLDEFAMGSSTETSGYQVTANPWDLSRVPGGSSGGSAAAVAAEEAVVALGSDTGGSIRQPASYCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARTVEDAAIFLGAIAGYDPKDSTSLNIEIPDYTKFLKPKLSKLKIGIIKETFGEGLDPVVGEAVHQAVEQLKKLGAKIKEISCPRFRYGLPAYYIIAPSEASANLARYDAVKYGIRKDADTLMSMYTGTRASGFGTEVKRRIMLGTYALSAGYYDAYYLKAQKVRTLIKQDFDQAFEEVDVLVCPTAPTTAFKAGEKTDDPLSMYLSDLMTIPVNLGGLPGMSIPCGFDSLGLPIGMQLISNVLREDLLFQVAFAYENSTDWHKKKPPIK
>NC_014501.1|WP_013320938.1|865742_866630_+|alpha/beta-fold-hydrolase
MVINFWIKLLLKGLGLGVIAYLLICIALWIWQKRLIFSPSSRIKSTPSDLGLAYSQVWIPVLTWEGKLEKMHAWWIPSESSSSEVLLYLHGNGVNMGANLGPIEKFHQMGFNVLMIDYRGYGRSEGKFPSESEVYRDAQAAWDYLVLKQKIAPEAIFIFGHSLGGAVAIDLAVRKPNAAGVILESAFTSMVDMIDHLPLYRFIPAKLVLNQRFDNLSKLKLLRVPLMLIHGTQDCTVPPSMSQVLYDLAPVPKQLLFIPLAGHNDVSRVGGEDYIQGLENFRQLALTHQRQLAER
>NC_014501.1|WP_013320939.1|866626_866827_-|hypothetical-protein
MEITVDCARDCINGCILKEKCPHREHLAQTEKFIQETSLDKMLEMAEAARLKKLTEPPKWVIPDDF

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Crispr_ID: NC_014501_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_6

927016-927213

Orphan

Consensus_repeat	Method
AAGTCTCTGAGGAANTCT	CRT

4 spacers

The CRISPR arrays of NC_014501_6

>merge|NC_014501|6|927016-927213|CRT
AAGTCTCTGAGGAAATCTCAGAAGAAATCTCTGAGGAAATCTCTGAGGAAGTCTCTGAGGAAATCTCAGAAGAAATCTCTGAGGAAATCTCTGAGGAAGTCTCTGAGGAAGTCTCTGAGGAAGTCTCAGAAGAAGTCTCTGAGGAAGTCTCTGAGGAAGTCTCTGAGGAAGTCTCAGAAGAAGTCTCTGAGGAAGTCT

>NC_014501|6|1|927016-927213|CRT
AAGTCTCTGAGGAAATCT	CAGAAGAAATCTCTGAGGAAATCTCTGAGG
AAGTCTCTGAGGAAATCT	CAGAAGAAATCTCTGAGGAAATCTCTGAGG
AAGTCTCTGAGGAAGTCT	CTGAGGAAGTCTCAGAAG
AAGTCTCTGAGGAAGTCT	CTGAGGAAGTCTCTGAGGAAGTCTCAGAAG
AAGTCTCTGAGGAAGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013321004.1\|933761_934874_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320997.1\|927737_928808_-\|integrase	unknown	unknown	gnl\|CDD\|271177
NC_014501.1\|WP_013320993.1\|923502_924021_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321003.1\|933383_933668_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|225583
NC_014501.1\|WP_013321006.1\|938156_938732_-\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|226648
NC_014501.1\|WP_013320998.1\|929277_929538_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369087
NC_014501.1\|WP_041933493.1\|933162_933384_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320986.1\|918392_918641_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320987.1\|918640_921259_-\|DUF3854-domain-containing-protein	unknown	unknown	gnl\|CDD\|372412
NC_014501.1\|WP_013321001.1\|931994_932687_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NC_014501.1\|WP_013320990.1\|922225_922420_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320988.1\|921240_921462_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871872.1\|923185_923440_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|376540
NC_014501.1\|WP_013320999.1\|929937_931164_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320984.1\|917495_918110_+\|Muramidase-(phage-lambda-lysozyme)-like-protein	unknown	unknown	gnl\|CDD\|381598
NC_014501.1\|WP_013320991.1\|922410_922722_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321000.1\|931300_931852_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320985.1\|918205_918406_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321005.1\|937990_938164_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013320989.1\|921467_922229_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013321001.1\|931994_932687_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	3.32485e-29
NC_014501.1\|WP_013320997.1\|927737_928808_-\|integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.46131e-13
NC_014501.1\|WP_157871872.1\|923185_923440_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.7685e-10
NC_014501.1\|WP_013320984.1\|917495_918110_+\|Muramidase-(phage-lambda-lysozyme)-like-protein	gnl\|CDD\|381598	cd00736, lambda_lys-like, Bacteriophage lambda lysozyme and similar proteins. Lysozyme from bacteriophage lambda hydrolyzes the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. However, unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan, but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli, though they differ structurally.	6.44238e-36
NC_014501.1\|WP_013320998.1\|929277_929538_+\|hypothetical-protein	gnl\|CDD\|369087	pfam06806, DUF1233, Putative excisionase (DUF1233). This family consists of several putative phage excisionase proteins of around 80 residues in length.	0.00721028
NC_014501.1\|WP_013321003.1\|933383_933668_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	1.09923e-17
NC_014501.1\|WP_013321006.1\|938156_938732_-\|zeta-toxin-family-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	3.12438e-68
NC_014501.1\|WP_013320987.1\|918640_921259_-\|DUF3854-domain-containing-protein	gnl\|CDD\|372412	pfam12965, DUF3854, Domain of unknown function (DUF3854). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is likely to be related to the Toprim domain.	1.5986e-50

>NC_014501.1|WP_013320993.1|923502_924021_-|hypothetical-protein
MEDMRYPRWLPYPSSWFKAFVSFLFVIPLKYIVQFTGESLLVVFGAESVARYWLFEFLLITLVFVPIVVFSYIHCFLWGKFTKAVKWLPNFDSWLEGAANWLISVVSFGLCFYILVRFASNNVYYSHYFTKYGSSLNGQLAWFISSVFIVTAAYLYQLKRFVKESLSISKKH
>NC_014501.1|WP_157871872.1|923185_923440_+|helix-turn-helix-domain-containing-protein
MGKSKLSQQPTVNFKKLQLKDVRNLLGLTQESFAQALGVKRETVSRWENGKDDPEFLEPAVKLYKLLQEINRSFEDLAIPEKKD
>NC_014501.1|WP_013320991.1|922410_922722_-|hypothetical-protein
MFLFSPEQNQKLPTLGFNFFNLFRLDIRIEITLAPASGKWAVLSRESRWKNFLCFLMGGRKGNQWEYKTEYILPSVRAANHFSWLVIGEPVYADLTLEESECL
>NC_014501.1|WP_013320990.1|922225_922420_-|hypothetical-protein
MSLDHSGSLQEKSLLDLELETDEDGYHPYFGKHKLKEIEESRQRMKATIADWRSNIHRWRGYRK
>NC_014501.1|WP_013320989.1|921467_922229_-|hypothetical-protein
MIPTQAQLAQYLYEIAQLGKDGREYVEFHELANESQQIWKERALALIKKIWGGDARIGYGCFNPQTGQGIYKLFCPSEEALPQAELIAFNTEWEEFSLLMSELEASLKVHKANPYINSHHSKFYNQRQVIKAAKRMVDEYYRELYCLGQMMIEYLRSVCLVLQTQYTDAVTHRHKMMILDKVVFPLIEGGIKKIKSIQEKGIKAYAWEESPKDIWKAPYPIEYLRQQIKDLKEQLGRQSLELKDDELDNYVPF
>NC_014501.1|WP_013320988.1|921240_921462_-|hypothetical-protein
MFYRKISAIAILLILFAGGSEVVAAFNHEPSAIVTAALAVLTLGFVTFINMFSSSKRENPLGEEAYRLCKKNI
>NC_014501.1|WP_013320987.1|918640_921259_-|DUF3854-domain-containing-protein
MQKEHLTELEKSCIDKDIIALNFRSLQGGSPWEHLLYGLGKEERRNDGRLRDKWLQKYRHLDDGGWWCSGVDINSFVPHSLVNKCYGLDSEWGCFKPNTPRVSEGKIIKYENPPQQPTEIFALKVSEENWKKIAQRLWLEVPKEPGLLGFKCAEIDFWQWILDDPDIPLIITEGAKKTALLLSLGYPSIALPGVNSGYRNEDGIKKLISQIELLTNERDEIIFCFDQDSKFKTRQRVRDAIKTYHKLLKNKKSRVSIISWNPEDGKGVDDFVAANGEQAFHSAYKDRQSFEDWWAKNTQKALRLSYDQLFNFVETEMSEELRFDELRSQILYQDQKFQWEDNVKEWFFDQTGLIASKEDVKAIISYFSKKSGFNPLKLYLEKSHKEAERVSIDNLATRYFGTTDPLYDLMVKMWLISGVARAVKPGEQVDHVLMLQGTQGLYKSRFFRTLGDEFYDSSIDESKLNDKDTKLIVHSSWIIELAEYDRMNRRSQSEIRQWLTVLRDNFRKPYAAETKVHHRPCIFGATVNEYEFLSDRTGDRRFWVIPINAENLPNGTIDYEMLEKERDGIWASAVDAYLNREPWWPADPQLKKQINDLNEQFRTYDEWQTKIIQWLNNNYVDWITSGEILERVFNLSPDKHDRASQQRVTEVLTRLKWKPSRRGKDRIRGWSCPTIENTENTPQEVGRPESLSTEAIQEIDQNKATNPPQEVGLSETLSTSQCDQRDQRDQPLLKNEEQDDSEVLNMKVILADIDEAMTRLNWSREDGINYLKLVYGKKSRHALSDDQILEFRSYLQNLDLVKDDHLLPGDLILHKVGGFGIIQKTNPRGLFTAKWLNPGVKKQDRYLDSLYVDKSWRGKDVLTNLFNKAMED
>NC_014501.1|WP_013320986.1|918392_918641_-|hypothetical-protein
MKLSKAQRDFLIRAGAFTRGAKNGKVYFYGGKGTLTHRTAKILEQNNILFESDFQTYQLTNNGKELAEKLYQEYLQEKNGSN
>NC_014501.1|WP_013320985.1|918205_918406_-|hypothetical-protein
MAQTNWVKTSEAANKLGVTPVLLRRMLGKGLFKKGKHYRNISINQARPTYRWNIDKLEKFFDEVVL
>NC_014501.1|WP_013320984.1|917495_918110_+|Muramidase-(phage-lambda-lysozyme)-like-protein
MHDVNLTKPNPQKGIYYEFSPERWAWLDLIAWSEGTDKKIEQNANLGYTLYSSRNYKTLERIQDTETGYDVTFGFREVADLSKHPKIHVPFGNTTSTAFGRYQIMDFTDAWIRDYLQKNNFPLLPSYQPEYQDQMCLLLIDAKREALKYVDLGLKGLEEALNRLSYEWASLPPGRYGQGFHPFDICKDIYTKSLEKWEKVPTPK
>NC_014501.1|WP_013320997.1|927737_928808_-|integrase
MKDFNSLVASANQRLKTAKCRCRIEIQNKAVYLRGTFTPGKQQRIPLKVKASVEGIKLAEAKAKQISGLMDAHQFILDDWIRNKTSPSTVGEFVDRFETEYFKNKPNDKTTRETWNKEYLKPFQELPLTQPLTLPLLESALYEQTQPDTRSRRRYALAYGKLADLAGLNGEMIRKQVGNYGVKSLSPRSLPSDQLISQVFNSLDTGWLKSCFGFMAAYGLRNHEVYHADLLDYPICFVARGKTNERYVWPLYPEWAQWVVDSSRQEINPQLTNSQLGNKITKAFHKIKIPFSPYNLRHAWAVRAIMFGLDISLAASQMGHSVSVHSRIYHHWINKTTHQRAMDILLARSDRPKPPV
>NC_014501.1|WP_013320998.1|929277_929538_+|hypothetical-protein
MTHFINKQEASRCLQISATTLKRYRLQGILIEGVHWVRLNSRCIRYNLELIQNWVQNRHDPVAHQKAIENYQATLLSYQGQPRKNT
>NC_014501.1|WP_013320999.1|929937_931164_-|hypothetical-protein
MLAVLGDYLKHLNSEIETYEQLIASKREEAQKLTQLQGQVVEALGLLKGIVDELNTVDPNAIATVKTATLQIFDNGSQLEEDLSTDNDNPIEHQKNNSLLSSENPVNKSETDEVQLRLQLLTPEEEDSLKATDIENRSEIESDEDEENLSDSESSPKESTYIRLSENVVYQPDQTTVYAGINAYNRAKSWGEWLCFTHTVGERFKVINSSRSQGYSYDLIVFGIQSEDAHRLAQADLAKQPTNSENASWQPVKRHPLPTPPRPQTCQPGDLAVGDIARKADGREYRIIGVNDDGSVVKVVNQDNMEMAFAVGALYLVKKAESGKSDQRDESEPDNNLTTVTEAFSNGKTRTPNLEIGTDVLIHSRRYQGKYEGKQGVVVEEPTNLGVKIDIGEEAPIFFLNGEISVIE
>NC_014501.1|WP_013321000.1|931300_931852_-|hypothetical-protein
MIYTASYFEPHRHHGQLFSISRTVRRGFRVDGRLEFFVPSADLLQDWKQKRINEEQYTSRYRKEIKANFPIIKVWLANLDPKKHITLLCWERSGMDEALKQWEKTGKWKHERPFCYRNLVIKIVQKFRPDCYGGTDILKVLMPICRNCLTEVIPALITEGFDDAHYCPKCRIWTKQVLEPECA
>NC_014501.1|WP_013321001.1|931994_932687_-|hypothetical-protein
MSDLIVFGFENQKVRCVGTPDQPEWIAQDVCDVLSVGLASNTLRNFDFDEKGMYSIHTPGGEQEMLTVTEPGLYRLIFKSRKAVAKRFQRWIFHEVLPSLRRTGSYSIQQNQQSPKALIVARAINEINELVVDISPRLAQYLIDHTISEVLEQTALPGTTEILRGVVEIAEEMGLPVNAQNRSQLGRFVKNSPIGQLAVPEKRLVNGTMREVQCYPDTEAVRNIIRSFFS
>NC_014501.1|WP_041933493.1|933162_933384_+|hypothetical-protein
MVTLEQALLTVNQLPIEQREMLVEIVKNQLIEARRQEIAEDAEKAIAAFHQGQLQPQPIETIIAELKATLTQD
>NC_014501.1|WP_013321003.1|933383_933668_+|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MRQLVLTSKFKKAFQKFVLRNPKLEKKIEEVLRQMQEDVFAPQLSTHSLQGKLLGLKACSCGYDCRILFSIEIDPENQEEVILLLDIGTHDEVY
>NC_014501.1|WP_013321004.1|933761_934874_-|hypothetical-protein
MSEYQYYEFQAIDRPLTQEERTAISQLSSRVHPTATRASFTYSYGDFKSDPKKVLAQYFDIMYYIANWGTQQLMFRFPKSLISSSVIEPYCIKDCISLTYIKSWAILDWQFNQEEGFDYWMEGEGILAELLGLRQEILQQDYRGLYLAWLKAITMSSEYAEIDKTQLEPPVPPGLKQLSSSQKAFAKIFEVDEYLLTAACESSGKPTLISDKNWQQAIVQLSSSECQDFLLRLAKGESNLSAKFTQRLSELIVTTPVPSKSRRTIQQLFEAASGEEKATKKRQQQEAEIKRIQELEALAKRETQAWNEVESLLLKPQAKTYEQAVELLVQLRDLAEYQNRYSFFQEKINQIYKKYSRRTGLIERLKKARL
>NC_014501.1|WP_013321005.1|937990_938164_-|hypothetical-protein
MSEPIPDKLSELLDAGVRVAIAEAIERHRKLGESISILKDGKIVTLTGDEIPPAKKN
>NC_014501.1|WP_013321006.1|938156_938732_-|zeta-toxin-family-protein
MPNVYVIGGCNGSGKTTVAKRLLPDFLGVIEYVNADEIAAGLSPFNPESVAMQAGRLMLERLATLKAQKVNFAFETTLAARNFARFLRDCQNSGYRVNLIYFWLQTPDLAVERVKRRVVSGGHNIPEEVVRRRYERGRSNLTQLYLPLCDTWIVYDNSGNEPSLIAERPFNQQPIIYNLSIWQQITEVTHE

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Crispr_ID: NC_014501_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_7

1320517-1320611

Orphan

Consensus_repeat	Method
TAGTCATTAGTCGTTAGTTGTTAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_7

>merge|NC_014501|7|1320517-1320611|CRISPRCasFinder
TCAAAAATAGTCATTAGTCGTTAGTTGTTAGTCGTTAGTTGTTAGTCATTAGTAGGGGCACAATGCTTGCGCCCATTAGTCATTAGTCATTAGTC

>NC_014501|7|6|1320517-1320611|CRISPRCasFinder
TCAAAAATAGTCATTAGTCGTTAGTT	GTTAGTCGTTAGTTGTTAGTCATTAGTAGGGGCACAATGCTTG
CGCCCATTAGTCATTAGTCATTAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013321317.1\|1317723_1318929_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NC_014501.1\|WP_013321312.1\|1312507_1312714_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_157871786.1\|1311395_1312148_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321316.1\|1316735_1317650_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NC_014501.1\|WP_013321309.1\|1308766_1310218_+\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NC_014501.1\|WP_013321314.1\|1315029_1315173_+\|high-light-inducible-protein	unknown	unknown	gnl\|CDD\|177653
NC_014501.1\|WP_013321315.1\|1315360_1316209_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_014501.1\|WP_013321320.1\|1323134_1323659_+\|DUF4330-domain-containing-protein	unknown	unknown	gnl\|CDD\|379510
NC_014501.1\|WP_013321313.1\|1312821_1314840_-\|magnesium-chelatase-ATPase-subunit-D	unknown	unknown	gnl\|CDD\|274135
NC_014501.1\|WP_013321326.1\|1328778_1329456_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321324.1\|1327696_1327876_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|214377
NC_014501.1\|WP_013321329.1\|1331461_1331701_+\|DUF1902-domain-containing-protein	unknown	unknown	gnl\|CDD\|312506
NC_014501.1\|WP_013321310.1\|1310621_1311410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215507
NC_014501.1\|WP_013321328.1\|1330321_1331383_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_014501.1\|WP_013321319.1\|1320807_1322862_-\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NC_014501.1\|WP_013321327.1\|1329557_1330145_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_049802503.1\|1312190_1312391_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321323.1\|1325762_1327481_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NC_014501.1\|WP_013321325.1\|1328036_1328633_+\|sulfite-oxidase-like-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NC_014501.1\|WP_013321322.1\|1323965_1325678_-\|caspase-family-protein	unknown	unknown	gnl\|CDD\|226700

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013321317.1\|1317723_1318929_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	2.86637e-99
NC_014501.1\|WP_013321313.1\|1312821_1314840_-\|magnesium-chelatase-ATPase-subunit-D	gnl\|CDD\|274135	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.	0
NC_014501.1\|WP_013321316.1\|1316735_1317650_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.96967e-47
NC_014501.1\|WP_013321314.1\|1315029_1315173_+\|high-light-inducible-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	6.57329e-05
NC_014501.1\|WP_013321309.1\|1308766_1310218_+\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
NC_014501.1\|WP_013321315.1\|1315360_1316209_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.31634e-43
NC_014501.1\|WP_013321320.1\|1323134_1323659_+\|DUF4330-domain-containing-protein	gnl\|CDD\|379510	pfam14221, DUF4330, Domain of unknown function (DUF4330). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 165 and 177 amino acids in length. There is a single completely conserved residue G that may be functionally important.	2.93916e-77
NC_014501.1\|WP_013321323.1\|1325762_1327481_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	2.32369e-176
NC_014501.1\|WP_013321324.1\|1327696_1327876_+\|50S-ribosomal-protein-L32	gnl\|CDD\|214377	CHL00152, rpl32, ribosomal protein L32; Validated.	2.91518e-17
NC_014501.1\|WP_013321329.1\|1331461_1331701_+\|DUF1902-domain-containing-protein	gnl\|CDD\|312506	pfam08972, DUF1902, Domain of unknown function (DUF1902). Members of this family of prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated.	0.000234391
NC_014501.1\|WP_013321310.1\|1310621_1311410_+\|hypothetical-protein	gnl\|CDD\|215507	PLN02939, PLN02939, transferase, transferring glycosyl groups.	1.81865e-06
NC_014501.1\|WP_013321328.1\|1330321_1331383_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NC_014501.1\|WP_013321319.1\|1320807_1322862_-\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NC_014501.1\|WP_013321325.1\|1328036_1328633_+\|sulfite-oxidase-like-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.87206e-97
NC_014501.1\|WP_013321322.1\|1323965_1325678_-\|caspase-family-protein	gnl\|CDD\|226700	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only].	1.79325e-05

>NC_014501.1|WP_013321317.1|1317723_1318929_+|ABC-transporter-ATP-binding-protein
MTDEVLIQVDHVSKKFCQRFRKSLYYGMQDLALELIGSKEEHKLRSGEFWSVSDVSFNLKRGECLGLIGPNGSGKSTLLKMINGLIKPDRGRIEVRGRVGALIELGAGFNPILTGRENIYANGTILGLTIAEIDSKLDAIIEFAEIEEFIDTPIQNYSSGMKVRLGFAVAAHMEPDVLIIDEVLAVGDVGFRAKCFNAIYQMIKKAAVVMVTHQLPQVSRVCSDIIVLNQGKCEFQGKDVAKGIDIFYTYFKGEKGTIGGNGKATIYDVDFECQGKRGIDSINYLDELSVCIDFEVDSDIEAVSIAVGFLTPELQHAAQCVSLYNNFQIINTGERMQVVVNLGQINFNPGSYALEILINEVQHRNLGEILIRSQNLKKIRVAAGFYSQVPIQMQGNWQVLF
>NC_014501.1|WP_013321316.1|1316735_1317650_+|ABC-transporter-permease
MKIPNPQEFESQPEPQNTSGPHKRLKVTVYEPESRLSHPFQLLQEMWFDLFSSRELAWQLLIRDISAQYRQSFLGILWAFIPPVITALALTALKNSRIINLGHTDIPYPVYVMFSMSLWQLFSDSVNGILISTKLARTMLAKIKVSPEAFIVAKLGNIAFSFGIQLILIIFLFIWYKVEVSWTLILAPVALIHLLMFATAMGLILGPISVLYGDVTKAMTYIMRGWIFVTPVLYPMPEHGLWAIIVRLNPVTPLLITVRELVISGNLSHPTEFWIASVISFIGLIFGWIFYHISMPILTERATS
>NC_014501.1|WP_013321315.1|1315360_1316209_-|mechanosensitive-ion-channel-family-protein
MDPSQISQINLTPDTLTEFLNTVVTVLTAFVFKLIGAILLWFVGRRLISFGVGIVGRSLKKNSRVDSTFISYVTSVLAVILQVILVVAILGFFGVETASFAALLAGAGVAIGAAWSGMLANFASGVFLIFFRPFNVGDFICAGGVTGTVEEIGLFVTTLNTPDNVKTIVANSKISSDNIQNFSANAYRRVDLVAQLHHGVNHLEAMARLREQVSRIPNVLMNPAPDIEILELNIAGPILCVRPYCHNQDYWQVYFDTNRVIRETCGEAGYPVPEQHYAIRQA
>NC_014501.1|WP_013321314.1|1315029_1315173_+|high-light-inducible-protein
MEKQENKFGFTSFAENWNGRLAMLGFVIGILTELLTGKGILSQLGLM
>NC_014501.1|WP_013321313.1|1312821_1314840_-|magnesium-chelatase-ATPase-subunit-D
MPSLTPTLAKINFPLTAVVGQEAIKLALLLTGVDPGLGGVVIAGRRGTAKSVMARAIHSLLPPIEIIKDNPFNCDPTKPDEWDDHTQEQYSNTDIPELPKEIIAAPFIQIPIGVTEDRLLGSVDVEESVKRGEAVFQPGLLASAHRGVLYIDEINLLDDQIANQLLTVLSEGRNTIEREGLSFQHPCKPLLIATYNPEEGPLREHLLDRIAIALSADGVLALDQRLQAVDRAIGFSNSPQAFIEQYNEEIDDLRTQIILAREWLKEVTITHDQIAYLVEEAIRGGVQGHRAEIFAVRVAKASAALDGRNTVSAEDLRRAVELVIIPRSIITERPPEQQQTPPPPPPPEPPQDESQQDQDEPEDENKEEPEQEPDGIPDEFIFDVEGVLLDPSVLYFTQMAQRQGKSGSRSLIFSEDRGRYVKPMLPKGKVRRIAVDATLRAAAPYQKARRLRHPERNVIVEQGDIRSKRLARKAGALIVFVVDASGSMALNRMQSAKGAVMRLLTEAYENRDQVALIPFRGEKADVLLPPTRSIALAKRRLESLPCGGGSPLSHGLTQAVHVGMNAKMSGDIGQVVIVAITDGRGNIPLAKSLGEPPAEGEKPDIKAELLEIAAKIRGLGMKLLVIDTEKKFVSTGFAKELAAKAGGKYYHLPRATDQAIASMAKGAIADMR
>NC_014501.1|WP_013321312.1|1312507_1312714_-|hypothetical-protein
MRNFKENLRLDAESLRKQYINKPFPKGNVTVIELHLKDGTAFGIGAISKKKSPVDIPKAKSERKFING
>NC_014501.1|WP_049802503.1|1312190_1312391_-|hypothetical-protein
MRVIDPLQAKEAILEIIDDCLEGYAIFPGSQGRRELFNWWLLEVVPAAWCLKLPQHLYTIKGLSQF
>NC_014501.1|WP_157871786.1|1311395_1312148_-|hypothetical-protein
MSNVQYTPNVSLVAFYGSKPPPFRNLIQQLQNYLVEELEEQFQPYVLEQIHGTMIGYEGVKTDKGILSQWFWEHRNEERYINLSASIDYIRHTQLLPLNIRLGGYHPNINYGSKNIDPSLFERSFQFINNFAVLRGWPFGEQQILSNLNQLRLEFQRFNLLHKYHPKADSLDNDFYIRLGVLKVKPSDEKIKLIENRIRNCLKASCLVDILVDLENLSFVGYQDTSLPVTTTKVIPLKAATVAQIELLYA
>NC_014501.1|WP_013321310.1|1310621_1311410_+|hypothetical-protein
MVASIPIKERLTNALQQAQNTENQDSDNIRAILKETITQAATEAEQDPEKLHSIIKESIAATLDTFLEKGKEGEEELTACLEGIIEGISSSKRQAISQNQAEIQRLQNQVESDEEALENQIDSALVEIKNTVKDRSENVKKAINVAINNLKDSEEVGLLQKRYAQLKAQLAVIQANLASRYGQEFDEVKRYLDEAKTWYDRAQKDPENFSKKIGTKHQEFETKLGETGTALAKKERQVKQLLRELWNSLREAFQDHKDSGVK
>NC_014501.1|WP_013321309.1|1308766_1310218_+|RtcB-family-protein
MITKQDCRKINNYIWEISTSFKPQMTVPVWIFADEELLEEALKDLSVTQAVNVACLPGLAGHVAIMPDVHQGYGMPIGGVMAARVPDGIISPGAVGYDINCGVRVLASGIDYKSAKRHLPELATALYRNCPSGVGGKGSVPLSAEELDKMCRQGAKWALEKGYATEEDLQRTEEFGCLEGADPNSVSKRAKDRGRGQLGTLGAGNHFLEVDVIEEIFDQDAADIMGLYEGCLAIQIHCGSRGFGHQICTDYVQDFQLAVINYGIQLPDRELVCAPISSKEGQAYLGAMKAAANFAFANRQTLAYHARQSFEEVFGSQTGNHALRQVYDIAHNMAKIEQHNINGEEMTVCVHRKGATRAFGPGFEGLPPEYQEIGQPVLVPGSMGTESWILLGTEANDALSFGSSCHGAGRVMSRSKAKKEIRGERLRGELEKEGINVRAGSLPGLAEEAPQAYKDVNRVVETVSQAGIAHKVARLRPVAVVKG
>NC_014501.1|WP_013321319.1|1320807_1322862_-|biosynthetic-arginine-decarboxylase
MGGQAKAKLAQESENLKIALQENLREIAKSDQQEIATEWTIEDSEHLYRIKGWGEPYFSINTVGHVTVSPEGDRGGSLDLYELVESLRRRNIGLPLLIRFSDILADRIERLNACFAKAIARYNYPNVYRGVYPIKCNQHRHIVESLVRYGKPFQFGLEAGSKPELMIALATLEPAENPQNNQSPLLICNGYKDREYIETALLATRIGLKPIIVIEQLKEVDIAIEISRQFGIKPILGVRAKLSSKGIGRWGNSSGERAKFGLTIPEILAVVHRLQASEMLDCLQLLHYHVGSQISSITVVKDAIREAAQIYGELVNLGASMQYLDVGGGLGVDYDGSKTNFYVSKNYNMQNYANDIVAEVQEACAERNIAAPVLISESGRAITAHHSVLIFDVLGSSEVPRTPSLPGTEKEHLIVRNIRETYNLINEENYQETFHDAMQFKEEAISLFNFGYLSLKERAKVEEIYWACCGKISEIVKKQDYVPDDLEDLEKIMASIYYVNLSVFQSAADAWAIDQLFPIMPIHRLTEEPTQKGILADLTCDSDGKIDKFIDLKDVKDVLELHPLKAEQSSSNNVDSKDPYYLGMFLVGAYQEIMGNLHNLFGDTNVVHIKMNPKGHQIEYLVKGDTITEVLGYVQYNGEDLLETIRHRTEQALQDNRITLEEAQLLLQDYERSLRRYTYLVDSH
>NC_014501.1|WP_013321320.1|1323134_1323659_+|DUF4330-domain-containing-protein
MRILDSKGRLFGKLSILDLGAALVILLVIIGIFVVPGTSGTSTIAQVATKPIEVDVIVRGLSVLDPEALLNQFQEEKKTNIIIRNQPAGQLNIKTVNALPRRIAVPQPDGTVKALEDPRRETAYSQDLIMTLAGQAQITDTGAVVGGQKVKIGTTIELEGKNYNFNTSVIQVRT
>NC_014501.1|WP_013321322.1|1323965_1325678_-|caspase-family-protein
MESYQCLVIGISRYQFFPPLNHGEGDAKAIYQFFRQEVNIPERQLLLLSDTSGTFSGLSAYPNGDNLLNWLKLNNIDRLNPQNTPLWFFFLGYGLNYQGEDYLMPIDGNPQDVAHTGIRVSTILDILQQQTDRPILVILNLYLSGSPTKVGQQSINLAKHKKIGLIFSLRQSSETTLSQGIFTSALLEALRYYRREITLSKLAQYLGDRLPSISFSGEKLVLSPIVISPSLAFSSQSLFASIQREKLDITQSDFEPLKQSSTSSVPQPISAINVSIEDKSAPNFPLLPALEVTHTMTQPEPEETIPMTTYQFFLPSSVKIEPPHDGKWLWLGGVFVLLVLFLLIYGARWTLLAPDSSPELTSSFQYSTAQLESQRELLKQATTYLKENQASSFNRAIQEVGKIPLSSPVYQEAQEKMARWSEMILDIAQGRAKQGNFQDAIAAAKLVPPQQKQVYNAALKAIETWQVQVKQQQVNQALIDGAKALIQPALASSYNQGITILRQIRSSEPGYKQAQELIEQWSQKIYRLANSRAKQGDYQSAIATAKLVPAGTSAHQMAKNALAKWQAKLD
>NC_014501.1|WP_013321323.1|1325762_1327481_-|ABC-transporter-ATP-binding-protein/permease
MKRLNLKFFKRFWAIAQLYWWSNEKWRALGLLALLIVLLVIYTQLNVTINTQQGEIFSALADKNLKRFWNSIFTFLGVLIIYVPLFTGFYYCQDKLGLYWRQWLTHRFLNEYFSNKSYYKINYFTSEIDNPDQRITEDIRSFTLSSLNYCLLILQSVFTVIAFSVVLWKFSPSLVFFLLIYGVFGVLITTGIYGNKLIKINFEQLRKEADFRFGLVRIRENAESIAFYGGEEREINQLKELFKRVFDNYNRLIIWTNLYLGMFQNIYEFIPYILPAVIVAPSVLSGQFEVGAVREAQGAFLKIFYSLNIIVSEFQNLTSFAAGVDRLYTFHEYLEPTPTEKRREIIPRPTIDTIEANRLGIEHLTLETPNYQRTLFQDLSISLQPGQGLLVMGASGCGKSSLLRAIAGLWKSGTGAIYRPKLEEIFFLPQRPYMILGTLREQLLYPNIDLDISNQKLEEILQMVKLGDLAERFGGFELEKDWSVLLSLGEQQRVAFARLLISRPKYAILDEATSALDIGNEKNLYEHLLETETTFISVGHRPSLSQYHQLILEFLEGERWELRPSNPGTQII
>NC_014501.1|WP_013321324.1|1327696_1327876_+|50S-ribosomal-protein-L32
MAVPKKKTSKAKRDQRRATWRRQAALQAQRALSLGKSVLTGRSNSFVYPQDEEEEDDEE
>NC_014501.1|WP_013321325.1|1328036_1328633_+|sulfite-oxidase-like-oxidoreductase
MLGKFFNKPDPELSDRVPPGQYLTKGFPVLTYGETPVIGTSEWQFSVWGMAKPKTFTWSDFMNLPQHEFTQDFHCVTRWSKLDVQWTGIKVSDFMKLIELEPGVTHVMQHCYGGYTTNLDLDEFWREDNFFAFKLFGEPLPAEHGGPMRLVVPHLYAWKSAKWINGLEFLAAEEPGFWERNGYHRRGDPWTEERYGGL
>NC_014501.1|WP_013321326.1|1328778_1329456_+|hypothetical-protein
MSEVKYNAPITLSTLMVIGVSVITFTSIGSIASSRAQALSSPQPLAKTSNNLILPAGTQIPVKYDQSEKILLTKEDTMALTLKVATNITYADGTIIIPNGSEIVGEIKPSGKGSQFFSQKIFIKSPNQTHLQTSLDAISQIITKIETLIKGVDTEQILKGATLGNKAENLIASFKNYNRHRRRTVNSSELEALAGWFLSSETLELISINPEKDLNLTLRSELVLK
>NC_014501.1|WP_013321327.1|1329557_1330145_-|hypothetical-protein
MIKIRLFSLSGKFSGQLSQFLLIFSGLTGWNITYCAMSIAQTSPLLLSELPPPPSMTPIDETSSSEQGETITTIPYFESTPTPPPSQSVQQEYNFQAPQPYYSTPANAGDKLVEFYRVEVMVQKAISNDESLLSQVRQIEPFAYLQTNNEAIYAGLFTEQGEAQKRVQQLMSQGLAAQIVPVNYSVSASFIPVQR
>NC_014501.1|WP_013321328.1|1330321_1331383_+|tRNA-2-thiouridine(34)-synthase-MnmA
MNPVVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLMKGKGQCCSEGMVDAAFICEQLGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYARQELGIDCIATGHYARIRYDETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGTIFPLGNQTKEETRRIANEFGLKTADKPESQDLCLIEAHGSMQAFLDQYIHQKEGDIVDLKGKVLGKHKGIHHYTIGQRKGIGVAAAEPLYVVKLDPVMNQVIVGNRADAGKPECSVSRMNWVSIAEPSSPIHTEVQVRYRSSAVPVDVIPLGDNRVKLVFDEPQFGITPGQAAVLYDGEVLLGGGIIEKFPDS
>NC_014501.1|WP_013321329.1|1331461_1331701_+|DUF1902-domain-containing-protein
MKTLIKLKIERFFENEAEYFVATSDDLQGLVAEGKTIQEAIEIAEDVAKGLLALEKELNDSLQLQAVPSQFEYPLIMEV

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Crispr_ID: NC_014501_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_8

1333852-1334337

Unclear

Consensus_repeat	Method
GGCGTGGCGGNNGGCGTG	CRT

11 spacers

cas3

The CRISPR arrays of NC_014501_8

>merge|NC_014501|8|1333852-1334337|CRT
CTTGTGGCGGGAGGCGTGGCGTTTGGCGTGGCGGGTGGCGTGGCGGGTGGCGTGTACTTTGGCCTGTCCTTTGGCGTGGCGGGTGGCGTGGCGGGTGGCGTGTACTTTGGCCTGTCCTTTGGCGTGGCGGGTGGCGTGTCCTTTGGCGTGGCGGGTGGCGTGGCGGGTGGCGTGTACTTTGGCCTGTCCTTTGGCGTGGCGCTAGGCGTGGCGCTAGGCGTGGTGGCAGGCGTGGGGGTAGGCGTGGAGAAAGGCGTGGAGAAAGGCGTGGAGACAGGCGTGGGGGTAGGGGTGATCTTTGGCGTGATCTTTGGCGTGATCTTTGGCGTGGCGGGAGGCGTGATCTTTGGCGTGGCGGTAGGCGTGATCTTTGGCGTGGCGTTTGGCGTGGCGGTAGGCGTGGAGAAAGGCGTGGAGACAGGCGTGGAGACAGGCGTGGGGGTAGGCGTGGTGGCAGGCGTGGCCGTAGGGGTGGCGTTTGGCGTG

>NC_014501|8|2|1333852-1334337|CRT
CTTGTGGCGGGAGGCGTG	GCGTTTGGCGTGGCGGGT
GGCGTGGCGGGTGGCGTG	TACTTTGGCCTGTCCTTT
GGCGTGGCGGGTGGCGTG	GCGGGTGGCGTGTACTTTGGCCTGTCCTTT
GGCGTGGCGGGTGGCGTG	TCCTTTGGCGTGGCGGGT
GGCGTGGCGGGTGGCGTG	TACTTTGGCCTGTCCTTT
GGCGTGGCGCTAGGCGTG	GCGCTAGGCGTGGTGGCA
GGCGTGGGGGTAGGCGTG	GAGAAAGGCGTGGAGAAAGGCGTGGAGACA
GGCGTGGGGGTAGGGGTG	ATCTTTGGCGTGATCTTTGGCGTGATCTTTGGCGTGGCGGGAGGCGTGATCTTT
GGCGTGGCGGTAGGCGTG	ATCTTTGGCGTGGCGTTT
GGCGTGGCGGTAGGCGTG	GAGAAAGGCGTGGAGACAGGCGTGGAGACA
GGCGTGGGGGTAGGCGTG	GTGGCAGGCGTGGCCGTA
GGGGTGGCGTTTGGCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013321342.1\|1343403_1345860_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_014501.1\|WP_013321343.1\|1346033_1348772_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NC_014501.1\|WP_013321336.1\|1339444_1339783_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321322.1\|1323965_1325678_-\|caspase-family-protein	unknown	unknown	gnl\|CDD\|226700
NC_014501.1\|WP_013321328.1\|1330321_1331383_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_014501.1\|WP_013321329.1\|1331461_1331701_+\|DUF1902-domain-containing-protein	unknown	unknown	gnl\|CDD\|312506
NC_014501.1\|WP_013321320.1\|1323134_1323659_+\|DUF4330-domain-containing-protein	unknown	unknown	gnl\|CDD\|379510
NC_014501.1\|WP_013321337.1\|1340003_1340816_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NC_014501.1\|WP_013321323.1\|1325762_1327481_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NC_014501.1\|WP_013321326.1\|1328778_1329456_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321324.1\|1327696_1327876_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|214377
NC_014501.1\|WP_013321335.1\|1338970_1339366_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_014501.1\|WP_013321338.1\|1340868_1341729_+\|translation-elongation-factor-Ts	unknown	unknown	gnl\|CDD\|183447
NC_014501.1\|WP_013321340.1\|1342895_1343105_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321333.1\|1336267_1337200_-\|phytoene-synthase	unknown	unknown	gnl\|CDD\|215339
NC_014501.1\|WP_013321327.1\|1329557_1330145_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321330.1\|1331762_1332836_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|214640
NC_014501.1\|WP_013321334.1\|1337359_1338781_-\|15-cis-phytoene-desaturase	unknown	unknown	gnl\|CDD\|131778
NC_014501.1\|WP_013321325.1\|1328036_1328633_+\|sulfite-oxidase-like-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NC_014501.1\|WP_013321339.1\|1341888_1342791_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013321343.1\|1346033_1348772_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	0
NC_014501.1\|WP_013321342.1\|1343403_1345860_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_014501.1\|WP_013321322.1\|1323965_1325678_-\|caspase-family-protein	gnl\|CDD\|226700	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only].	1.79325e-05
NC_014501.1\|WP_013321328.1\|1330321_1331383_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NC_014501.1\|WP_013321329.1\|1331461_1331701_+\|DUF1902-domain-containing-protein	gnl\|CDD\|312506	pfam08972, DUF1902, Domain of unknown function (DUF1902). Members of this family of prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated.	0.000234391
NC_014501.1\|WP_013321320.1\|1323134_1323659_+\|DUF4330-domain-containing-protein	gnl\|CDD\|379510	pfam14221, DUF4330, Domain of unknown function (DUF4330). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 165 and 177 amino acids in length. There is a single completely conserved residue G that may be functionally important.	2.93916e-77
NC_014501.1\|WP_013321337.1\|1340003_1340816_+\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	3.28669e-161
NC_014501.1\|WP_013321323.1\|1325762_1327481_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	2.32369e-176
NC_014501.1\|WP_013321325.1\|1328036_1328633_+\|sulfite-oxidase-like-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.87206e-97
NC_014501.1\|WP_013321335.1\|1338970_1339366_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	7.01365e-64
NC_014501.1\|WP_013321338.1\|1340868_1341729_+\|translation-elongation-factor-Ts	gnl\|CDD\|183447	PRK12332, tsf, elongation factor Ts; Reviewed.	2.02201e-115
NC_014501.1\|WP_013321333.1\|1336267_1337200_-\|phytoene-synthase	gnl\|CDD\|215339	PLN02632, PLN02632, phytoene synthase.	1.55402e-161
NC_014501.1\|WP_013321330.1\|1331762_1332836_+\|AAA-family-ATPase	gnl\|CDD\|214640	smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.	3.51301e-05
NC_014501.1\|WP_013321334.1\|1337359_1338781_-\|15-cis-phytoene-desaturase	gnl\|CDD\|131778	TIGR02731, Phytoene_dehydrogenase_chloroplastic/chromoplastic, phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_014501.1\|WP_013321324.1\|1327696_1327876_+\|50S-ribosomal-protein-L32	gnl\|CDD\|214377	CHL00152, rpl32, ribosomal protein L32; Validated.	2.91518e-17

>NC_014501.1|WP_013321330.1|1331762_1332836_+|AAA-family-ATPase
MGRSLKVSQEYISRVKSSLQRNGYPSQQALADDAGFSLSTVKNFLNGKPIDHLNFIELCEKLGLDWQEISKTELISDDISLENSPFITGTPITHPRYFFGREKEVKRLFNLLKRHPLQNAAIIGKRRSGKTSLLHYLKTITTTPVNLLRPAQKSDWLRYPEHYQWVFVDFQDSRMASQEYLLRHILEGLEISLSGDCNLDRFMDIVSSKLNTFSIILMDEIGTALDRYSQLDDDFWSSLRSLGTNQTRGKLAFILAAHESPIELSKNTGHDSPFFNIFGYTTVLGALTETEALELINSSPISFAQEDIEWILERSQCHPFLLQILCREKLWSLEDGEIAEDWKEEGLREINPYLYLL
>NC_014501.1|WP_013321329.1|1331461_1331701_+|DUF1902-domain-containing-protein
MKTLIKLKIERFFENEAEYFVATSDDLQGLVAEGKTIQEAIEIAEDVAKGLLALEKELNDSLQLQAVPSQFEYPLIMEV
>NC_014501.1|WP_013321328.1|1330321_1331383_+|tRNA-2-thiouridine(34)-synthase-MnmA
MNPVVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLMKGKGQCCSEGMVDAAFICEQLGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYARQELGIDCIATGHYARIRYDETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGTIFPLGNQTKEETRRIANEFGLKTADKPESQDLCLIEAHGSMQAFLDQYIHQKEGDIVDLKGKVLGKHKGIHHYTIGQRKGIGVAAAEPLYVVKLDPVMNQVIVGNRADAGKPECSVSRMNWVSIAEPSSPIHTEVQVRYRSSAVPVDVIPLGDNRVKLVFDEPQFGITPGQAAVLYDGEVLLGGGIIEKFPDS
>NC_014501.1|WP_013321327.1|1329557_1330145_-|hypothetical-protein
MIKIRLFSLSGKFSGQLSQFLLIFSGLTGWNITYCAMSIAQTSPLLLSELPPPPSMTPIDETSSSEQGETITTIPYFESTPTPPPSQSVQQEYNFQAPQPYYSTPANAGDKLVEFYRVEVMVQKAISNDESLLSQVRQIEPFAYLQTNNEAIYAGLFTEQGEAQKRVQQLMSQGLAAQIVPVNYSVSASFIPVQR
>NC_014501.1|WP_013321326.1|1328778_1329456_+|hypothetical-protein
MSEVKYNAPITLSTLMVIGVSVITFTSIGSIASSRAQALSSPQPLAKTSNNLILPAGTQIPVKYDQSEKILLTKEDTMALTLKVATNITYADGTIIIPNGSEIVGEIKPSGKGSQFFSQKIFIKSPNQTHLQTSLDAISQIITKIETLIKGVDTEQILKGATLGNKAENLIASFKNYNRHRRRTVNSSELEALAGWFLSSETLELISINPEKDLNLTLRSELVLK
>NC_014501.1|WP_013321325.1|1328036_1328633_+|sulfite-oxidase-like-oxidoreductase
MLGKFFNKPDPELSDRVPPGQYLTKGFPVLTYGETPVIGTSEWQFSVWGMAKPKTFTWSDFMNLPQHEFTQDFHCVTRWSKLDVQWTGIKVSDFMKLIELEPGVTHVMQHCYGGYTTNLDLDEFWREDNFFAFKLFGEPLPAEHGGPMRLVVPHLYAWKSAKWINGLEFLAAEEPGFWERNGYHRRGDPWTEERYGGL
>NC_014501.1|WP_013321324.1|1327696_1327876_+|50S-ribosomal-protein-L32
MAVPKKKTSKAKRDQRRATWRRQAALQAQRALSLGKSVLTGRSNSFVYPQDEEEEDDEE
>NC_014501.1|WP_013321323.1|1325762_1327481_-|ABC-transporter-ATP-binding-protein/permease
MKRLNLKFFKRFWAIAQLYWWSNEKWRALGLLALLIVLLVIYTQLNVTINTQQGEIFSALADKNLKRFWNSIFTFLGVLIIYVPLFTGFYYCQDKLGLYWRQWLTHRFLNEYFSNKSYYKINYFTSEIDNPDQRITEDIRSFTLSSLNYCLLILQSVFTVIAFSVVLWKFSPSLVFFLLIYGVFGVLITTGIYGNKLIKINFEQLRKEADFRFGLVRIRENAESIAFYGGEEREINQLKELFKRVFDNYNRLIIWTNLYLGMFQNIYEFIPYILPAVIVAPSVLSGQFEVGAVREAQGAFLKIFYSLNIIVSEFQNLTSFAAGVDRLYTFHEYLEPTPTEKRREIIPRPTIDTIEANRLGIEHLTLETPNYQRTLFQDLSISLQPGQGLLVMGASGCGKSSLLRAIAGLWKSGTGAIYRPKLEEIFFLPQRPYMILGTLREQLLYPNIDLDISNQKLEEILQMVKLGDLAERFGGFELEKDWSVLLSLGEQQRVAFARLLISRPKYAILDEATSALDIGNEKNLYEHLLETETTFISVGHRPSLSQYHQLILEFLEGERWELRPSNPGTQII
>NC_014501.1|WP_013321322.1|1323965_1325678_-|caspase-family-protein
MESYQCLVIGISRYQFFPPLNHGEGDAKAIYQFFRQEVNIPERQLLLLSDTSGTFSGLSAYPNGDNLLNWLKLNNIDRLNPQNTPLWFFFLGYGLNYQGEDYLMPIDGNPQDVAHTGIRVSTILDILQQQTDRPILVILNLYLSGSPTKVGQQSINLAKHKKIGLIFSLRQSSETTLSQGIFTSALLEALRYYRREITLSKLAQYLGDRLPSISFSGEKLVLSPIVISPSLAFSSQSLFASIQREKLDITQSDFEPLKQSSTSSVPQPISAINVSIEDKSAPNFPLLPALEVTHTMTQPEPEETIPMTTYQFFLPSSVKIEPPHDGKWLWLGGVFVLLVLFLLIYGARWTLLAPDSSPELTSSFQYSTAQLESQRELLKQATTYLKENQASSFNRAIQEVGKIPLSSPVYQEAQEKMARWSEMILDIAQGRAKQGNFQDAIAAAKLVPPQQKQVYNAALKAIETWQVQVKQQQVNQALIDGAKALIQPALASSYNQGITILRQIRSSEPGYKQAQELIEQWSQKIYRLANSRAKQGDYQSAIATAKLVPAGTSAHQMAKNALAKWQAKLD
>NC_014501.1|WP_013321320.1|1323134_1323659_+|DUF4330-domain-containing-protein
MRILDSKGRLFGKLSILDLGAALVILLVIIGIFVVPGTSGTSTIAQVATKPIEVDVIVRGLSVLDPEALLNQFQEEKKTNIIIRNQPAGQLNIKTVNALPRRIAVPQPDGTVKALEDPRRETAYSQDLIMTLAGQAQITDTGAVVGGQKVKIGTTIELEGKNYNFNTSVIQVRT
>NC_014501.1|WP_013321333.1|1336267_1337200_-|phytoene-synthase
MLQLPRPTQPTQPLASIEEAYELCRQITEKYSKTFYLGTLLMPPEKRQAIWAIYVWCRRTDELVDGPNAKLTTPETLDRWEDHLESVFAGHPLDDADVALVDTLKRFPMDIAPFRDMIAGQRMDLYRSRYETFEELNLYCYRVAGTVGLMSSAVLGVDERYRTAPWEKDQPLYIPTEEAIALGIANQLTNILRDVGEDAGRGRIYLPLEDLKLFDYSEEDLFNGVIDDRWRALMRFQISRARKYYDEAERGIRALSPDSRWPVWSALMLYQGILDVIEMNDYDVFTKRAYVPTAQKMLFLPVAWLRAQAL
>NC_014501.1|WP_013321334.1|1337359_1338781_-|15-cis-phytoene-desaturase
MRVVIAGAGLAGLSCAKYLVDAGFTPIVLERRDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELGIEERLQWKEHSMIFNQPEKPGTYSRFDFPDIPAPINGVMAILRNNDMLTWPEKILFGIGLIPAMIKGQSYVEEMDRYSFSEWLQKHNIPKRVEKEVFIAMSKALNFINPDEISATILLTALNRFLQEKNGSKMAFLDGSPTERLCEPLVDYITSKGGEVRLNAPLKEILLNHDGTVQSFIIRGVDGAADEILTADLYVSAMPVDPLKVMLPKPWREMDFFKKLEGLEGVPVINLHLWFDRKLTEIDHLLFSRSPLLSVYADMSNTCKEYANPDRSMLELVLAPAKDWITKSDPEIIAATMAELEKLFPQHFTGDNPAKLLKYHVVKTPRSVYKATPGRQACRPDQKTPIANFYLAGDYTMQRYLGSMEGAVLSGKQAASVIAQDYSPKTSTSSIAGEATLV
>NC_014501.1|WP_013321335.1|1338970_1339366_+|glycine-cleavage-system-protein-GcvH
MELEYPDDLRYLDTHEYVRLDGEIATIGISAYAIEQLGDLVFLDLPEIGDPVEVGETFGRVESVKAVEDLYPPVSGTVIERNEAMIDSPEHIADDPYGEGWLLKIRVVNPDAELDETLTADEYRAQVEGDT
>NC_014501.1|WP_013321336.1|1339444_1339783_-|hypothetical-protein
MARYTCSYLVNAEIEQLPSLLNEILDSCGFEIIFEALGYIMARELPGNIAFSKLVSVDVFIDATKVHNQQVPLTWVVKSDELPLQQYNHCWQRFKEIQQQIGEHRQWHLVAN
>NC_014501.1|WP_013321337.1|1340003_1340816_+|30S-ribosomal-protein-S2
MSVVTLNELLESGVHFGHQTRRWNPKMAPYIYTARNGVHIIDLVQTAELIEEAYDYMRKAADQGKKFLFVGTKRQAAGIIAQEALRCGSNFVNQRWLGGMLTNWETIRTRAERLKELEEMEESGAISRRPKKEAAVLRRELFKLQKYLGGIKTMRRIPDVVVIIDLKREYNAVQECQKLGIPIVALLDTNCDPDYVDVPIPGNDDAIRSIKLIIGKLADAIYEGRHGEVAPDEDYEDFDENLENDYEEEDNYSQADWASKYSDDDEESDR
>NC_014501.1|WP_013321338.1|1340868_1341729_+|translation-elongation-factor-Ts
MAEISAKLVKELREKTGAGMMDCKKALSENEGDLVKATEWLRQKGITSAEKKSGRITAEGLVHSYIHTGGRIGVLVEINCETDFVARGDTFKELVNNVAMQIAACPNVEYVNVEDIPEAVAQKEKDIEKGRDDLAGKPDNIKDKIVEGRIGKRLKELSLMDQPYIRDQSITVAELVKQTIAQLGENIQIRRFVRFVLGEGIEKEEKNFAEEVAAQTGQKVEEPKAETATVEPPAAEPVVEVEAPAAEAVVEVEPPAAEVETKNEQPKAQPDNKPKASPAKKGKKKK
>NC_014501.1|WP_013321339.1|1341888_1342791_+|hypothetical-protein
MASKIQKLKEELAILENQTSLLYAEAKETYQKYLKTLSQSVQKQLILAVYQICTQSYPQAFLKLSYSQRQKIQENIKSLGKTLDPKLLSYLDKTDNLDSEPGASLNIMEQMLLNLSNTETPEEEKTIEDELLLPVESTTPKNTVINNPNHLVNWCKMLEQGIVTTLNNLSKEVNHLLQQAHILPSQLPPQVLDMAIQAEEAGQPMSGSPNLLNVIVETGAKNLDETAEEPEIPSKITKITALHLRLSEIEFADANLSLHHREIRNLLEKIAQLRKQYQKKQRECAVAEAEAAWRACWYEE
>NC_014501.1|WP_013321340.1|1342895_1343105_-|hypothetical-protein
MKPNFEQMSKTELRKYVATHPDDQEAFYALVDRLTAQPSSQVYPASMTPGEIQETILSHIQNKQHSTDT
>NC_014501.1|WP_013321342.1|1343403_1345860_+|ATP-dependent-DNA-helicase-RecG
MTETPDWIRLQKALSVEAERGFTDLQGNQYRFHEFLCLNFGQSPPIGTSLDDRRRWQEMAVQFSRYPDLTLTQRQQLVAETRRFLQDLRQTLETPQEPPTPKLPKTAPVTHQTSQTRQITLDQPLSALVEVGYRKSDLLARLGLKTVQDLLFYYPRDHIDYARQVNIANLVAGETVTIIGTVKRCNCFTSPKNKQLSIFELLIKDHTGQIKLNRFFAGNRFTNRGWQERQKRLYAVGSLVAASGLVKQNKYGLTLENPEIEVLDSLGSNIESLKIGRVLPVYPLTEGVPADLIRKAVIEAMGAIAQLKDPLPKDIQNSYGLIKLKEAIANIHYPETPEILAHARRRLVFDEFFFLQLGFLQRRQEQKQTQKSASFNPRGELIEKFNEILPFALTGAQKRVIGEIQQDLKGTTPMNRLVQGDVGSGKTIVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVELLTGSTKVSKRREIHAQLESGELPLLVGTHALIQDPVNFRNLGLVVIDEQHRFGVQQRARLLAKGQAPHVLTMTATPIPRTLALTIHGDLDVSQIDELPPGRQPIQTTALSGKERTQAYDLIRREVAQGRQAYVIFPLIEESEKLDVRAAVEEYKRLSETIFPDFQIGLLHGRMSSSEKDEALNAFRDNKTQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHKSYCLLMSSSRTPDAHQRLKVLEQSQDGFFISEMDLRFRGPGEVLGTRQTGLPDFALASLVEDQEVLNIARQAAERIMMADSSLKTMPSLKKALDEKYQRMLGADILT
>NC_014501.1|WP_013321343.1|1346033_1348772_+|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MLKPLKPVTDPAYDILRSEYQPLSFIFKPDTVAVIGATDKEGSVGRTLLWNLISNPFGGTIYPINPKRHNVLGIQAYPNIKAVPEPVDLAVIATPAPTIPGIIAECVEAGVQGAIIISAGFREIGAAGLELERQIQEIARGKIRIIGPNCLGVMNPRNGLNATFASGIARPGNVGFISQSGAICTAVLDWSISENVGFSAFVSIGSMLDVNWGDLIYYLGDDPHTHCIVIYMESIGDARSFLSAAREVALTKPIIIIKAGQTEAAAKAATSHTGALSGSKDVLDAAFRRCGVLEVNRISEMFDMAELLGKQSRLPKGPRLTIVTNAGGPGVLATDALINTGGELAELAPETIAKLNQILPANWSHSNPVDILGDATPERYTKAFDIIQQDPNSDGILVILTPQAMTDPTQTAEQLKAYIQKSQKPVLASWMGGTEITAGETILNNSRIPTYRYPDSAARLFNWLWKYSYNLRGIYETPVLPHDQEGIPNRELVDEILQTVRSCGRTILTESESKQILGAYGIPIVRTATAKTEDEAVDFAESIGYPVVIKLYSKTITHKTDVGGVQLNLTDEEAVRWAYRDIQTSVTQKVGAEHFQGVTVQPMLNLSGGYELIIGSSIDPQFGPVLLFGTGGQLVEVFRDHAIALPPLNTTLARRMIEQTKIYKALQGVRGRKAVNLEALEYLLVRFSQLVVEQPWIKEIDINPLLASAERLTALDARVVLHPHDTPEDQLSHPAIRPYPTQYIVPWTMPDGTVVNIRPIRPEDEPLIVKLNHTLSEESVYFRYFHLMTLSSRIAHERLTRICFIDYDREMALVAEYKNPDTGEKEILAVGRLSKLHGINEGEFAMLVSDAYQRRGLGTEMLRRLVQIGKDEKLERIKAEILPENRAMQRVSEKVGFQLKRSPDIVTANYQL

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Crispr_ID: NC_014501_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_9

1837026-1837232

Orphan

Consensus_repeat	Method
NAGATTGAGATTCTGTATCNTTATAATC	CRT

4 spacers

The CRISPR arrays of NC_014501_9

>merge|NC_014501|9|1837026-1837232|CRT
GCGGCTAGGATTATCCTCATTATAATCTCGGTTCCGAGGGCGTTCAGATTGAGATTCTGTATCGTTATAATCCCGACGAGGATTGCGTTCAGATTGAGATTCTGTATCGTTATAATCTCGGTTTCGAGGGCGTTCAGATTGAGATTCTGTATCGTTATAATCCCGACGAGGATTGCGTTCAGATTGAGATTCTGTATCCCATTGAGA

>NC_014501|9|3|1837026-1837232|CRT
GCGGCTAGGATTATCCTCATTATAATC	TCGGTTCCGAGGGCGTTC
AGATTGAGATTCTGTATCGTTATAATC	CCGACGAGGATTGCGTTC
AGATTGAGATTCTGTATCGTTATAATC	TCGGTTTCGAGGGCGTTC
AGATTGAGATTCTGTATCGTTATAATC	CCGACGAGGATTGCGTTC
AGATTGAGATTCTGTATCCCATTGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013321785.1\|1843636_1845013_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_014501.1\|WP_013321789.1\|1847262_1847793_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223975
NC_014501.1\|WP_013321772.1\|1831826_1832048_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321768.1\|1826665_1827862_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163708
NC_014501.1\|WP_013321778.1\|1836437_1836962_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_014501.1\|WP_013321782.1\|1840287_1840893_+\|DUF3038-domain-containing-protein	unknown	unknown	gnl\|CDD\|371430
NC_014501.1\|WP_013321786.1\|1845533_1845734_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321780.1\|1838189_1838312_-\|photosystem-II-protein-PsbX	unknown	unknown	gnl\|CDD\|368995
NC_014501.1\|WP_013321767.1\|1826033_1826510_+\|hydrogenase-maturation-protease	unknown	unknown	gnl\|CDD\|99874
NC_014501.1\|WP_013321771.1\|1831479_1831764_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013321787.1\|1845829_1846348_-\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|319977
NC_014501.1\|WP_041933172.1\|1842723_1843449_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_014501.1\|WP_013321777.1\|1835877_1836387_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_014501.1\|WP_013321774.1\|1832686_1833739_+\|RNA-3'-terminal-phosphate-cyclase	unknown	unknown	gnl\|CDD\|235255
NC_014501.1\|WP_013321773.1\|1832202_1832667_+\|NINE-protein	unknown	unknown	gnl\|CDD\|222840
NC_014501.1\|WP_013321781.1\|1838602_1840168_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_014501.1\|WP_013321788.1\|1846436_1847108_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_014501.1\|WP_013321776.1\|1835180_1835810_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_014501.1\|WP_013321783.1\|1840946_1842584_+\|DUF4335-domain-containing-protein	unknown	unknown	gnl\|CDD\|372973
NC_014501.1\|WP_013321775.1\|1833818_1835111_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013321785.1\|1843636_1845013_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NC_014501.1\|WP_013321789.1\|1847262_1847793_+\|hypothetical-protein	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	3.78964e-35
NC_014501.1\|WP_013321768.1\|1826665_1827862_+\|hypothetical-protein	gnl\|CDD\|163708	cd08152, y4iL_like, Catalase-like heme-binding proteins similar to the uncharacterized y4iL. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin.	6.72436e-72
NC_014501.1\|WP_013321778.1\|1836437_1836962_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	5.82466e-35
NC_014501.1\|WP_013321782.1\|1840287_1840893_+\|DUF3038-domain-containing-protein	gnl\|CDD\|371430	pfam11237, DUF3038, Protein of unknown function (DUF3038). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	6.7132e-75
NC_014501.1\|WP_013321780.1\|1838189_1838312_-\|photosystem-II-protein-PsbX	gnl\|CDD\|368995	pfam06596, PsbX, Photosystem II reaction centre X protein (PsbX). This family consists of several photosystem II reaction centre X protein (PsbX) sequences from both prokaryotes and eukaryotes.	2.3144e-16
NC_014501.1\|WP_013321767.1\|1826033_1826510_+\|hydrogenase-maturation-protease	gnl\|CDD\|99874	cd06063, H2MP_Cyano-H2up, This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.	3.41513e-85
NC_014501.1\|WP_013321787.1\|1845829_1846348_-\|phycobiliprotein-lyase	gnl\|CDD\|319977	cd16339, CpcS, S-type phycobiliprotein (PBP) lyase. This family contains the S-type phycobiliprotein (PBP) lyase (denoted CpcS/CpcU or CpeS/CpeU). PBP lyases are employed by cyanobacteria, red algae, cryptophytes and glaucophytes for light-harvesting. Pigmentation of light-harvesting phycobiliproteins of cyanobacteria and cryptophytes requires covalent attachment of open-chain tetrapyrrole chromophores, the phycobilins, to the apoproteins. PBP lyases mediate this covalent attachment of phycobilin chromophores to apo-PBPs and also ensure the correct binding of the chromophore with regard to the specific attachment site and stereospecificity. The S-type lyase is distantly related to CpcT and similarly adopts a beta-barrel structure with a modified lipocalin fold. Many members of the CpcS/CpcU family ligate phycocyanobilin (PCB) to a specific cysteine residue in the beta-subunits of phycocyanin (CpcB) or phycoerythrocyanin (PecB) and to a related cysteine residue in the alpha and beta subunits of allophycocyanin (AP); they are typically given the designation of "CpcS" or "CpcU". Other members which attach phycoerythrobilin (PEB) to the beta-subunit of phycoerythrin (PE) are given the designation "CpeS" or "CpeU". In Guillardia theta, a Cryptophyte, which has adopted phycoerythrobilin (PEB) biosynthesis from cyanobacteria, phycobiliprotein lyase has been shown to provide structural requirements for the transfer of this chromophore to the specific cysteine residue of the apophycobiliprotein.	3.40558e-78
NC_014501.1\|WP_041933172.1\|1842723_1843449_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	5.05024e-137
NC_014501.1\|WP_013321777.1\|1835877_1836387_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	6.37546e-35
NC_014501.1\|WP_013321774.1\|1832686_1833739_+\|RNA-3'-terminal-phosphate-cyclase	gnl\|CDD\|235255	PRK04204, PRK04204, RNA 3'-terminal phosphate cyclase.	3.95696e-157
NC_014501.1\|WP_013321773.1\|1832202_1832667_+\|NINE-protein	gnl\|CDD\|222840	PHA01886, PHA01886, TM2 domain-containing protein.	5.63406e-14
NC_014501.1\|WP_013321775.1\|1833818_1835111_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NC_014501.1\|WP_013321788.1\|1846436_1847108_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	6.47331e-32
NC_014501.1\|WP_013321776.1\|1835180_1835810_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	8.45829e-17
NC_014501.1\|WP_013321783.1\|1840946_1842584_+\|DUF4335-domain-containing-protein	gnl\|CDD\|372973	pfam14233, DUF4335, Domain of unknown function (DUF4335). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 204 and 480 amino acids in length. There are two completely conserved residues (G and D) that may be functionally important.	4.203e-16
NC_014501.1\|WP_013321781.1\|1838602_1840168_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.35894e-85

>NC_014501.1|WP_013321778.1|1836437_1836962_-|TolB-family-protein
MTITGLSLMALLSACDFTNGPQLLSGLNSRYNDEQPTLSGDGRLLAFVSNRNGKSQIVLYDLQARQFRQLRGFEPSGGAIAESPSLSRTGRYLVYISSIQGRPDIILYDQATGRSELLTQNYRSWLRNPNISPDGRYIVFETARRGQWDVEVLDRGPLVELDIPDGTRVPNPQQ
>NC_014501.1|WP_013321777.1|1835877_1836387_-|TolB-family-protein
MKPFAFIVLISVTSLLSGCTGYPRLLNFPFDPGGRSLNSFASELTPQISSRFIVFVSDRNGSQDVYLYDAQIRQLVNLPGLNSLDEVTSHPSISEDGRYIVFQASRQGRTGIFIYDRQTEQKRNLTASLPAEVRNPTISADGTKIAFEVAKDGQWDILVYDRSGQQIAP
>NC_014501.1|WP_013321776.1|1835180_1835810_-|Uma2-family-endonuclease
MLLTERRCDRVILYSISWQQFENILANLGETRSARIAYDHGTLEIMTPLPEHEYYKERISDTIKDVAELLELNCECLGSTTWKREFEKVGVEADNCFYFQNEPLIRGKLQFDLNQDPAPDLALEIDITSKSLDRFPIYARLGVPEIWCYDSGELKIYQLQGEEYLEVENSLVFPNLRVQEIPSLIDTYRCEGRLIFVRQVREWVRRQID
>NC_014501.1|WP_013321775.1|1833818_1835111_+|serine--tRNA-ligase
MLDIKQIRENPEQVQERLNRRNAAKGYDLTPILELDQQQRELESSRIQLQTRSNEISKLIPQKIKAGSDPKGEEIKALKEEGNEVKNKLSSLEPQEREIKAQIENLLLQLPNLPAESTPIGKDETENVEVRRWGDEYLPTLQVLPHWEIGEKLGILDFERAVKVAQSRFVNLVGLGAALERALINFMLDRQIEAGYLEVMPPILINSTSLQGTGQLPKFSEESFKCSEDELWLAPTAEVPVTNLYRDEIIDLDQLPIKHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVELVKIVPPDTSEAEHQALVSDAEAILQALKLPYRVIELCTGDLGFGAAKCYDLEVWLPSSNTYREISSCSNFRDFQARRANIRFKEKGKKGTQYVHTLNGSGLAIGRTMSAILENYQQADGTVKVPEVLQPYLKREVIGKN
>NC_014501.1|WP_013321774.1|1832686_1833739_+|RNA-3'-terminal-phosphate-cyclase
MLDIDGSWGEGGGQILRSSLSLAAITGQAIRLYQIRAGRKKPGLAAQHLTCVRAAAAVCKAEVRGDKLGSMTLEFMPGSPPCPGNYTFDVTEAREGGSAGAVTLILQTVLLPLAMASGDSVVILKGGTHVAWSPPISYIEQVYIPLLRKLGLQAELELQAWGWYPKGGGEVHLHIKGNTRLQGQKFLEKGALQQIKGLAVVTELPSHIPQRMAMRCENLLQQAHLKGYVEPIRAKGVAPGAGVFLTAEYENIRAGFGALGRRGLPAEMVAQRAVEELVAFHQQDAPVEEFLGDQLLLPMALAHSSSQYRVVHMSDHLKTNALTISQFGLAQIDLNPEESLVCVKPHHSLT
>NC_014501.1|WP_013321773.1|1832202_1832667_+|NINE-protein
MDKRQSSYILWLGFLFGFGGLHRIYNGKITTGLIWLMTWGLFGFGQFFDLFLIPSMVEENALPTKDRPQLGRNEKYGSANVELVEPNKENLMVRLVKAAHAQGGKISVTQGVLATGVGFKQVESVLMEMAKTGYVSIDNDPKTGIVVYSLYEYS
>NC_014501.1|WP_013321772.1|1831826_1832048_+|hypothetical-protein
MTTTNSIPFQKVVEYVEALSPEEQDLLVSLIQKRRVEERRAEIAANATETIKAWHQGRAKRGSVNDLRAKLNT
>NC_014501.1|WP_013321771.1|1831479_1831764_+|hypothetical-protein
MKIEDLKKRSDKNRPMTTVTIRMPEDVIEDLKRLAPLHGFSGYQPLIRAYIGQGLRTDLERLEGDSVRALIESLKRHGVSSEVINQALREVAHK
>NC_014501.1|WP_013321768.1|1826665_1827862_+|hypothetical-protein
MNLFTEYPEKNEQELNNLVIEQVKKQIQKLYGDKPSAKRDTHAKTHGAIKGSLEIFDFDEEAIKRQLVQTIELSADKIKSLSLKQGLLAQAKQYPVWIRFANGRTTVENDYVADTRSMSVKIIGVEGERLKTSHELRTQDIITQNTEIFFIKNIQYYYEFFKSVVDSPKAALIWLLTHPQQFLALQKMTGPTPKSLLTEKYWSGSAFSLGLKSDFDESKPGHVPVEYPAVVKFAFTPVSPQAPHEAIPFQSRAGIPKLPFIDRAKALGFSKDQPDNYYRDDLIQKLKKPDAQYCWDFGIQFQANTQMSIDDVTVLWPEEQSQFFTVGRLTVNHQIMDSQEQLKFGENIQISIWNGLTVHRPVGALNRLRSLVYPIVADYRHQRNNVNYQEPTGDEIFN
>NC_014501.1|WP_013321767.1|1826033_1826510_+|hydrogenase-maturation-protease
MLTIIGCGNVTRNDDAVGVIVVQRLGQFLQENPYQNVRAFDCGTAGMEVMFQARGSKQLIIVDACSTGSQPGTIFKVPGSELEALPEPSYSLHDFRWDHALYSGKKIFQEDFPQDVTVYLIEAENLDFGLELSSTVEFAAEQVLQMLQDLIKHNYSFN
>NC_014501.1|WP_013321780.1|1838189_1838312_-|photosystem-II-protein-PsbX
MTPSLANFLWSLVWGAVIVVIPATVALIFISQNDKIKRIQ
>NC_014501.1|WP_013321781.1|1838602_1840168_-|sodium:proton-antiporter
MSVESMADVAIKQNLEQFLVVLSVSLSVATISRIFTPFRSFPYTLLLVMVGLGLAFVDIHLVNLSPELILEIFLPPLLFEAAWNVPWRDLKANWLSVALFAVLGVIISIFGVASAVSQFTTLPLTIALLLGASLAATDPVSVVALFRELGASKKLTVLMEGESLFNDGVAVVAFVLLVGIPLGVEEFSLTHTLVQFFTFTGLGIGIGCLIGFGISYLTQRFDLPLVEQSLTLVSAYGTYLIIEELGGSGVIGVVTVGIILGNFGSRIGMNPRTRLLVCEFWEFLAFFVNSIVFLLIGDQIKFSSLSDNLPLIFISIVAVVLTRLIAIFGLGSLNNLLTKNKINAKEKTILWWGGLRGSVSIALALSVPTVLEARQDIIDAVFGVVLFTLLVQGLTTKLFLEKLDLIGDQPLRQEYSELLARRTALLRILEYLDKLDQTPEVDEQFYRYEQTLVKGELQVIEAKISEYNQQYPQLRSLIMEQIRETLIDIEAETYAEFISTGRLNQKLSPVLQEILTRAEEK
>NC_014501.1|WP_013321782.1|1840287_1840893_+|DUF3038-domain-containing-protein
MRSYVQTPLSTVDPKDWPLVQFPEPQQLDNIRAYLDLILLALEALAKIDSDTILNTAQELSLESIFSDHIALWQLRAANPLRKNSGERKNLNVEEARALVLIISHLAKQHQELIRRAVSLLEQTVADNKDPHHSALLSDYLDIFSKLYQERMENSENVSPQQLFSLAYKLLVDLLFYSGFNGYRRLWLALLNQRFMGVMTH
>NC_014501.1|WP_013321783.1|1840946_1842584_+|DUF4335-domain-containing-protein
MLFSNSLIRRYTPPTCTLEIWGRRSWLSLWKTHNPIIDFKFKLLFDDPKILDEQQVILEGDRGELQLLCDRVSSYVQNLLTSSPSNLSLISAKAVIPYYVGNSTLNVEPQEALVNGTPEKSLPTELKVIDSKSVEGSNHSALSLTILPSLTPKGLLTHELDCSLLITNQNKSEVLLSISQLFDLANALEEYSLEAESSPNLEKVKPTKKIVIWAITALVALVAVGIPTVGIKWYRSLSQETALDEPSPSSGQSTIKDILPPVPLPPSNTSVPSPILAPSLAQQKKLPPPPGVGQATPPSRNPSIALVTPPKNVLPPTPVVPSAPQRNTIVLTPNLPATPSSSSAASGAQVRDPSAELVRSPSLSTLPTPPRPNSIPTLSNTPTQSANTAYSMPYSTAVPTLPKLPNLPSQTATLPSQQSQSQLAANLPHNQNNAALLDTIPQVTEVREYFQQRWQPPANLKHTLEYRLVLNSDGSIGRIIPLGRTANIYLDRTYMPLLNEPFVSPPPESVKNPQIRLVLSPDKTVKTFLEDNQEPLEAQNPSPVQ
>NC_014501.1|WP_041933172.1|1842723_1843449_+|triose-phosphate-isomerase
MRKIIIAGNWKMYKTQAEALEFVQTFKSKVDNTNESREIVLCAPFTTLGAMSKNLHGSRIRLGAQNIHWEDAGAYTGEIAGPMLTEIGVNYVIIGHSERRQYFGETDETVNLRLLAAQKHGLIPILCVGESKSQRDAGETEKIIINQLKRDLVDVDQNNLVIAYEPIWAIGTGDTCESTEANRVIGLIREQLTNKNVPIQYGGSVKPNNIDEIMKQSEIDGALVGGASLDPADFASIVNYQ
>NC_014501.1|WP_013321785.1|1843636_1845013_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MSIIPGETIAAIATAIVPQQGSIGIVRLSGTLALAIARTVFYAPGKQAWETHRILYGYIRHPQSGQLIDEALLLLMLAPRSYTKEDVIEFHCHGGIIPVQQVLQLCLENGARLAQPGEFTLRAFLNGRLDLTQAESVAELVNSQSVQASQIALAGLQGKLAHPIRQLRSNCLDILAEVEARIDFEEDLPPLNEDEIKQHLAAVLIEVNQILATADRGELLRSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVGGIPIQVLDTAGIRETDDRVEKIGVERSRHAAEAADLILLTIDAQTGWTPEDEQIYQQVKHRPLILVINKTDLQEAKSVNYPSDITSVVETVAAKNEGIDQLEKIILNSVQSGHLTVTNLEIAINQRQAAALTQASLSLQQVQETINNQLPLDFWTIDLRSAIQALGEITGEEVTESVLDRIFSRFCLGK
>NC_014501.1|WP_013321786.1|1845533_1845734_+|hypothetical-protein
MKDKTLQPLVWLGNIFIISLLLYMVKSSLRIDINPNCHAEEWIFGSCKSQAVENENRINLVEDSHQ
>NC_014501.1|WP_013321787.1|1845829_1846348_-|phycobiliprotein-lyase
MEIKEFLDLWVDKWFALRTSYQLEKKKIENSKSEITIESLSVDHPEVLKLCEHYQIDPSSTLGGLKTSWDNSVDWGKPKQSGSTVVVWIPDRDHPLTGKLLQKGKSQSFLGRYSLGNDQALTLIVEEADTYFEERVWFATPNLRLRNSLIKGANGFSQTAFYSEIRRVAPKN
>NC_014501.1|WP_013321788.1|1846436_1847108_-|HEAT-repeat-domain-containing-protein
MSQLSLEQIATQLESPNSRDRLLALASLREVPAEDAVPLIKKVLDDEMLPVRSMAVFALGVKQTEECYPILVKLLETDPDYGIRADAAGALGYLADARAFEPLVRAFYEDTEWLVRFSAAVSLGNLQDIRAKEVLLEALNTQEAVIQQAAIAALGEIRATDAVDKILNFVDSPDWLIRQRLAEALGNLKTQKSISALKFLSKDAHPQVSQAATLSLQRLEASA
>NC_014501.1|WP_013321789.1|1847262_1847793_+|hypothetical-protein
MLSFTKNENTTIDPDWSREKIYKWWSPGRQLLKSIRQYQKWKTKGGVLGNLISKYYVLTHRFWSVVSGADIPLNCQLGGGLLLLHPQGIVIHPEAVIGVNCAIFQQVTIVKSVKIGHGVLIGAGAKILSNATIGDYAKVGANAVVLNNSYIPPKATAVGIPARIILPSDQSFLDSQ

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Crispr_ID: NC_014501_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_10

2470646-2470761

Orphan

Consensus_repeat	Method
GTACAACGGATGGAAGGGCCCAATGAAGAGGAAGAACTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_10

>merge|NC_014501|10|2470646-2470761|CRISPRCasFinder
GTACAACGGATGGAAGGGCCCAATGAAGAGGAAGAACTGAAAATGAAACCTCTGGCCAGTAGTATTACGCCGTTGGTACAACGAATGGAAGGGCCCAATGAAGAGGAAGAACTGAA

>NC_014501|10|7|2470646-2470761|CRISPRCasFinder
GTACAACGGATGGAAGGGCCCAATGAAGAGGAAGAACTGAA	AATGAAACCTCTGGCCAGTAGTATTACGCCGTTG
GTACAACGAATGGAAGGGCCCAATGAAGAGGAAGAACTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013322294.1\|2465596_2465932_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322307.1\|2483218_2483902_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933647.1\|2464945_2465521_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_014501.1\|WP_013322304.1\|2479925_2480510_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322295.1\|2466059_2466362_-\|30S-ribosomal-protein-S14	unknown	unknown	gnl\|CDD\|214354
NC_014501.1\|WP_173362887.1\|2462888_2463476_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179157
NC_014501.1\|WP_013322308.1\|2484280_2485258_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_014501.1\|WP_157871891.1\|2471204_2472917_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014501.1\|WP_013322301.1\|2475269_2475899_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322297.1\|2468805_2470062_+\|RNA-polymerase-sigma-factor-SigC	unknown	unknown	gnl\|CDD\|236067
NC_014501.1\|WP_013322305.1\|2480725_2482363_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235728
NC_014501.1\|WP_013322296.1\|2466553_2468239_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NC_014501.1\|WP_173362906.1\|2461668_2462364_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_014501.1\|WP_013322306.1\|2482483_2483203_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322302.1\|2476044_2478723_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_014501.1\|WP_013322290.1\|2462390_2462825_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319945
NC_014501.1\|WP_013322288.1\|2460229_2461591_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
NC_014501.1\|WP_013322292.1\|2463544_2464531_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|180321
NC_014501.1\|WP_013322303.1\|2479135_2479648_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319909
NC_014501.1\|WP_013322300.1\|2473290_2475057_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_041933647.1\|2464945_2465521_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.25486e-93
NC_014501.1\|WP_013322295.1\|2466059_2466362_-\|30S-ribosomal-protein-S14	gnl\|CDD\|214354	CHL00074, rps14, ribosomal protein S14.	1.27881e-57
NC_014501.1\|WP_173362887.1\|2462888_2463476_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179157	PRK00889, PRK00889, adenylylsulfate kinase; Provisional.	3.38816e-124
NC_014501.1\|WP_013322308.1\|2484280_2485258_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.42916e-77
NC_014501.1\|WP_157871891.1\|2471204_2472917_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.10453e-15
NC_014501.1\|WP_013322297.1\|2468805_2470062_+\|RNA-polymerase-sigma-factor-SigC	gnl\|CDD\|236067	PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated.	0
NC_014501.1\|WP_013322305.1\|2480725_2482363_-\|FAD-dependent-monooxygenase	gnl\|CDD\|235728	PRK06184, PRK06184, hypothetical protein; Provisional.	4.09204e-124
NC_014501.1\|WP_013322296.1\|2466553_2468239_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NC_014501.1\|WP_173362906.1\|2461668_2462364_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	2.44607e-59
NC_014501.1\|WP_013322302.1\|2476044_2478723_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_014501.1\|WP_013322290.1\|2462390_2462825_-\|VOC-family-protein	gnl\|CDD\|319945	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.07852e-47
NC_014501.1\|WP_013322288.1\|2460229_2461591_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.31971e-95
NC_014501.1\|WP_013322292.1\|2463544_2464531_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|180321	PRK05949, PRK05949, RNA polymerase sigma factor; Validated.	0
NC_014501.1\|WP_013322303.1\|2479135_2479648_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.18093e-05
NC_014501.1\|WP_013322300.1\|2473290_2475057_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	0

>NC_014501.1|WP_013322297.1|2468805_2470062_+|RNA-polymerase-sigma-factor-SigC
MTATIFSSKTDNEYAPSAYSLLNSYSKTKMAIEIDNDALLASDISETETVTASKTHTRATTDLVRLYLQDIGRVPLLKKDEEVQNAQDLQRYIQLLELRSVAIANGDLVIKNFVSLIEKRDQLTSQLGHRPSLERLADAAEITVFELKKTLYEGKRHWAELANLEVQELERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKIAQLKGATPSIEELSQELEMSPPQIREVLMRVPRSVSLEIKVGKEKDTELIDLLETTEASPEDNIANEALRQDLHNLLADLTTREREVIQLRYGFKDGKSYSLADIGRTLQLSRERVRQIEAKAIQKLRQPKRRNQIRDYFEALS
>NC_014501.1|WP_013322296.1|2466553_2468239_+|dihydroxy-acid-dehydratase
MSDNYRSRIITQGSQRTPNRAMLRAVGFGDNDFTKPIVGVANGYSTITPCNMGINDLALRAEAGLKQAGAMPQIFGTITVSDGISMGTEGMKYSLVSRDVIADSIETACNGQSMDGVLAIGGCDKNMPGAMIAIARMNIPAIFVYGGTIKPGKYNGQDLTVVSAFEAVGQHSAGKIDDAQLLGIERNACPGAGSCGGMFTANTMSSAFEVMGMSLPYSSTMAAEDAEKADSTEKSAFVLVDAIRKQILPSQILTRKAFENAISVIMAVGGSTNAVLHLLAIAHTIGVELSIDDFEAIRARVPVLCDLKPSGRYVIVDLHQAGGIPQVMKMLLVHDLLHGDALTITGQTVAEVLKDVPDEPPQGQDVIRPWNNPVYKEGHLAILKGNLATEGAVAKISGVKNPKITGPARVFESEESCLEAILAGKIQAGDVIIVRYEGPKGGPGMREMLAPTSAIIGAGLGDSVGLITDGRFSGGTYGLVVGHVAPEAAVGGNIALVQEGDSITIDAKERLLQLNVAEDELIRRRANWQPPIPRYTKGVLAKYAKLVSSSSIGAVTDKDLF
>NC_014501.1|WP_013322295.1|2466059_2466362_-|30S-ribosomal-protein-S14
MAKKSMIEREKKRSALIAKYADQRADLKEQLRQAEDLDEIIELQRQLQRLPRNSSRTRHRNRCWVTGRPRGYYRDFGLSRNVLREWAHQGLLPGVVKSSW
>NC_014501.1|WP_013322294.1|2465596_2465932_+|hypothetical-protein
MTSQPIPPITLPPVKDPDSEGKWLKSALHRWMDLEFIPEPINETIAQRAAQIFVRQRLEGENDLGSLVIAVVTEMQAFDFRESFYSEFAIANAMSDLILDSLGIERCCGQN
>NC_014501.1|WP_041933647.1|2464945_2465521_-|leucyl/phenylalanyl-tRNA--protein-transferase
MIWDVESIIQAYAQGYFLMSDEDGTLGWYTSRQRTLIPLDDRFRYPRSLQRVLNQQKFTVAINRDFPSVCAACADRETTWISGELIDIYLQLHQAGWAFSFETWLGDQLAGGILGIVIRGAFIGESMFYRIPDGSKVAMVKLVEHLKQRGFVLFDAQLQNPHLARFGSYCITDREYQVLLKRALSHKCFFS
>NC_014501.1|WP_013322292.1|2463544_2464531_-|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MPTAKVNPKNQKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPDQIREFLSMSRQPISLDVRVGDNQDTELSELLEDEGISPDNYITQELMRQDLQDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQLRRRRSNVKEYIVAS
>NC_014501.1|WP_173362887.1|2462888_2463476_+|adenylyl-sulfate-kinase
MINSVIYLKTQLKKYKESSMKQRGVTIWLTGLSGAGKTTITNALEQRLREEDYPLEVLDGDVVRTNLTKGLGFSKEDRDENIRRIGFVANLLTRHGVFVLVSAISPYREIREQVKEKIGDFVEVFVNAPLTVCESRDVKGLYKRARAGEIKSFTGIDDPYEPPLNPEVECRTDIEDLEESVNKIWHKLEQLGYLR
>NC_014501.1|WP_013322290.1|2462390_2462825_-|VOC-family-protein
MTQQPIFHLAIPVNDLVRAKAFYGDGLGCEIGRESASAMIMNFYGHQVVAHLTQEPLTPQKGIYPRHYGIIFPTETDWEALVQRATEKQLSFYQEPSRRFPGQLTEHRTVFIQDPFYNLLEFKFYPHLEAIFGARELSQIGDRS
>NC_014501.1|WP_173362906.1|2461668_2462364_+|TrkA-family-potassium-uptake-protein
MSLRSLNFLDGLRRDHRQFAVIGLGRFGRAVCETLHKLGYDVMGTDIDEKLVAQVITDRIASTAIQLDSTKPIALREAGLFEFDTVIVAIGNYIEESIITTLNLKEAGVHCVVAKASTEIHGKLLKRVGADIVIFPEYEAGCDLAYTLTKPAILERLDLDQENSIVEVRVPEEFDNKSLAELQIRARFGLNVIAIGDGERYKINPNPQDRIHKGCAMVIMGSNKDIQRLPI
>NC_014501.1|WP_013322288.1|2460229_2461591_+|TrkH-family-potassium-uptake-protein
MTIARTICLGFIAVIAAGTLLLILPFSTSAGSWGNPIVALFTSTSAVCVTGLVVVDTGTYFSFWGELFITLLIQIGGLGYMLTTTFLMLLIGKRFELRQKFAIRESFDRPFLQGSQNIVRSVIATTLAFEIAGALLLFIKFTSDFGPIRGLWFAIFHSVSAWNNAGFGLLKDNMISYRSSYIINFTIPILIIFGGIGYQVIIEMYSWFIDRFKRERFDFSLNYKVAVHTTIFLLIFGTLGYLFLEFTNPQTFGGFNLKDKLLAAWFQSVVTRTAGFNSIDFGQLTISGLFLTMGLMFIGASPSGTGGGIKTTTLRILTSSTRAVLRGQEQVVLYEREVSVSLVLKAVAVVFGSAMTVLGITFAIALIEYSFLKNPIFINGTYNSIHIAFEVISAFCTVGLSTGITAPLSPYSQLLLVLAMYTGRVGVLLFMAAIIGDPRPSALHYPEENLLVG
>NC_014501.1|WP_157871891.1|2471204_2472917_-|tetratricopeptide-repeat-protein
MKPFISSLIIASLYFTPATIVPLEQLQIAQSQKIEELLQQAQQQIEQGKPLEAIETLQVILTRAKQQQDRYTEAFALVGLGFNYNNLGELEKALAYYNEALPIMQEIGESRGEATTLNNIGGVYNSMGQPLIALQYYSQALPLRREAGDREGEATTLNNMGRVYDNMGKPREALAYFKQSLPIMRETGDLTGEATTLNNIGGVYDSIGQPQIALEYYRQALPLIRQTGNRSVEGTTLNNMGGVYSNIGQPQKALAYYNQALPILRETGDRRGEAATLNNIGEVYTNIGQPQKALEFYSQALPLIRQTGDRRGEAATLNNIGEVYTNIAEFQKALLYYSQAMPIMQETGDRRGEAATLNNLGLVYDSIGQPQKALQYYCQALPIMQETGDLSGEATTLNNIGRVYHSIGQFYKALEYVSQALPLRRETGDRRGEATNLNNIGLVYDQIGQPEKALQYYHQALPLMQETGNRRGEATTLNNIGAVYDNIGQPEKALQYYQQALPIMQETGDRRGEATTLNNMAFIYLKTGQPEKALQYYQQALALSRQIGDNSLEAKALKGLEEINRRTNQP
>NC_014501.1|WP_013322300.1|2473290_2475057_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MPIDFRNTNTLWASILVETLHHLGLTTAVICPGSRSTPLTLAFAQHPHIEAIPILDERSAAFFALGMAKRTGLPVALVCTSGTAGANFYPAVIEAKESHVPLLVLTADRPPELRHCHAGQTIDQLKLYGNYPNWQTEIAVPDAAIAMLAYLRQTLIHAWERSLFPTPGVVHLNLPFREPLAPVISPEMETVQSLFDFNRFFAAITSGTGKKALSLSSISASSQVGQFLNLMEEWQCYQRGIIIAGVAHSYHPQDYCQSIARLSQVLHYPVLAEALSPLRNFAALNPYLVCTYDLILRNPSLAAQLTPDIVIQIGELPTSKQLRSWLENIQPQRWIIDPHSENLDALHGQTIHLRTSLEQLTDSLKIAATDTHSEYLLSWCELETKVRQNIDKTMKSIETFIEGKIVWLMSQLLPKNTPVFIANSMPVRDAEFFWRANNYHIIPYFNRGANGIDGTLSTALGMAHHYQSSVMLTGDLALLHDTNGFLIRPKFRGHLTIILINNGGGGIFEMLPIAQFEPYFEEYFATPQAVNFKSLCLTYGIEYYLIRNWAEFQQLLNPLPQTGIRILEINTNRKFDAEWLKNNLGNFS
>NC_014501.1|WP_013322301.1|2475269_2475899_-|hypothetical-protein
MKRLTNWLKLPKNRVLTGVRNSIRTGFIVGLFWVVGMIFTDDALAQTVITQTPKLDSTLQTIVTKTQFSLQKAVQDTNQVISDLPEQFDLAATETQPAIRKQIEDDIENRQDALENLADKVDDLAEKVKKYSKKLYGAGLGSQIQQNAQNLLLSLDNLANSINRLADDVEAARDNIIVPIGDQLRPQIEAVKGALQEAQQSIEAIQNPA
>NC_014501.1|WP_013322302.1|2476044_2478723_-|DNA-mismatch-repair-protein-MutS
MTTSPESPEITTEIATKKSPHTDYRKLDRSKLTPMSQHYIEVKEQYPNALLLYRVGDFFECFFQDAVTISQELELALTSKDGGKEIGRVAMTGVPHHALDRYSRLLVEKGYAVIICDQVEDAAEAAAAGRMVERQITKLLTPGTITDEGMLHARKNNYLAAIVIAKDHWGLAYADISTGEFLTTQSNNLSALTLELLRLQPSEILIPTNAPDINSLLRPGEKSDYLADYLPDCFCYSLRSQIPFTLNEAKPRLLTTFRLKSLEGLGCEELTLAIRAAGGLLEYIEDTQKAHQVPLQPLKTYNLTEFLVLDYQTRRNLEITSTVRDNSYYGSLLWALDRTATAMGGRALRRWLSEPLLSIKGITARLDTIEELKENPSLRTDLRQLLRDIYDLERITGRVGAGTANARELLALAQSLVRLTDLADLAKGGNSPYLRALQKIPPDLEALGKEVVAHLVETPPLHLKDGGVIQDGVNFQLDEMRRLYEEDQQWLANLEVSERQRTGISNLKIGYNKTFGYYISLPRAKADHAPENYIRKQTLTNEERYITPELKERETRIERAKDELHELEYQIFSQLRAKVAEKAQEIRNIAKAVAAIDVLAGLAEVAVYQSYSRPQITEGRIIEITDGRHPVVEQSLGMGFFVPNSTNLGSLPPSKISEGNNQDYPDLIILTGPNASGKSCYLRQVGLIQLMAQIGSFVPAKAALLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATPNSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIQARTIFATHYHELNELASILSNVANYQVTVKEMPNEIIFLHQVRPGGADKSYGIEAGRLAGLPSVVIDRARQVMTQIEKHSKIALGLRQGIQKVNPIKNKKSREKMLEQLDIFGE
>NC_014501.1|WP_013322303.1|2479135_2479648_+|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MIQKLPRVFIGVLLAVVLAIGLSAPAYAQEELSKTTIQILKPQSYLYRVNSSSIKGKATPFYVDILGMTIDQNMDTPCTDDPKQICWREFYYPNVVQGRIAVYQNPYEGTGTAKGVITIVVDNVAVTKKYLEDRAIPVSSIQKPGNGVRLAFFTDRDGNSLAIRDNKGTN
>NC_014501.1|WP_013322304.1|2479925_2480510_+|hypothetical-protein
MISAKIRQILSVVVGTFCLLLMLTVMDVFVLNKAEAQAAIANCPQVPGTYLLNTYYGTAISSNNFTGKRVISLTSDGQIVAIDSNQGGTYGVPPAAQGFPNNRFTSGRGVWECGANDNWVEATTLNFNFPDPNSAKPEKVTVAKSDYYAKFNFSLDTVSGTFTITSFPLDGDLPEQESSHSYTFAFDGTRISTP
>NC_014501.1|WP_013322305.1|2480725_2482363_-|FAD-dependent-monooxygenase
MSSSLNPEKEILIVGAGPVGLTMAASLAQSGISCRIIDKADAPSQWSKALGIFPRTLEVFENLGVIKPVLETGKPLHKINLQAQQQRLGSVSFNTVNSPYPFVISLPQSQTERILREHLAHLGVKVQQNVELVGLKPHEGGVTATLHHADGQQETYQPSWLVGCDGSRSKVRELLGIPFVGSHYQESFVLADVKIDGSLPDNEATAFYYADGVLALFPLPGERFRVIISWPQKLAASEPTLAQIQALVDRASALNLQLSDPIWISKFHISRRKVRQYRMGRVFLAGDAAHVHSPAGGQGMNTGIQDAHNLGWKLALVAAGLSPSSLLDSYQIEREPVASEVLLFTDMITRVATLRNPFAQFLRNVMMSVGMKISAITVRGANTLAEVNISYRHSPIVANSQPSFFANLNPGTVKAGDRAPDAQLHQLSGQPVRIFELLGKRQVLLLFIDGEILSKIYQNWWAKVREIEENYPETITVYPIFSRKELATDLEKNYSILIDSEQRFAQQYQITESCLYLIRPDGYICFCSPLSEWERLQAYLKRIFY
>NC_014501.1|WP_013322306.1|2482483_2483203_-|hypothetical-protein
MSVNLDDFLIEQQELESLIDGNLVTQISLDIYRGVFLKNKKSLFSTFLTEIFTFILILIGVIPLAIIVIRNRVKMPEGSTEINQILIILAIICLGLMLLINIYWWKQSHQFKSLAILVDKTEQYNHLIQSIKLVKALELSNALNTAENWESQHQDLMEALRVIKDSLIQGFTVEKIIRKHKALINNQYDLLTSIEANLTALMTFDLSNPSSNYRDLLQDAIQIGMTVHKEMIKLRNKQD
>NC_014501.1|WP_013322307.1|2483218_2483902_-|hypothetical-protein
MNHFAILISFLRNRFQFLEEIHKGNRLETKIFSLLICSAVFLAIYGAIIGSSQSWLQMLSSALKLPALYLLTLIICLPTLYFFDIVSGSRFSFIQYIALLLASLSMISVMLFGFAPVSLFFRLSSNDYFFFQLLNITIFAITGFIGINFFYHSVINIPFQNDEIPKNRKNIIRGWLVLFAFVGSQLGWTLRPFFGSPGQPFALFRDIESNFYIQLFRIIGRVLGFNS
>NC_014501.1|WP_013322308.1|2484280_2485258_+|sulfurtransferase
MKSSILKQLSLIKSWPSKILFFLISVIVCTAIIPLLPIHPSTAATPSKVVFVSPSWVAEHQNDADIRILDVRSNPLDYITGHIPNAVHIADPTFRGPNGTLPVQYWQSQKLQSLFSEAGVTDQSKIVVYADGREILGATMVAYLLERTGHHNVAIVDGGLAGYKAAQLPVAKEFPKYKAGTFSVKDDPSVRVTLEQVKQSIKKPGIVFIDPRPPELFSGEQQIWVRNGHIPGAKNIPWVSFTVGESNFHQLKPLEEIKQILAKRGITPDQDIIVTCSTGREATLQYHVLKHLLGYPKVRVYEGSWTEYSSYPDLPIETGRDSQNV

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Crispr_ID: NC_014501_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_11

2548707-2548805

Orphan

Consensus_repeat	Method
CGTATAGCCCCACCCTTCAGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_11

>merge|NC_014501|11|2548707-2548805|CRISPRCasFinder
CGTATAGCCCCACCCTTCAGGGTGCGGGCGCAGGTAATCTTAGCCAAAAACTAGCCCGCGTAGGCGGGCTTTGTTCGTATAGCCCCACCCTTCAGGGTG

>NC_014501|11|8|2548707-2548805|CRISPRCasFinder
CGTATAGCCCCACCCTTCAGGGTG	CGGGCGCAGGTAATCTTAGCCAAAAACTAGCCCGCGTAGGCGGGCTTTGTT
CGTATAGCCCCACCCTTCAGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013322363.1\|2546246_2546735_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_014501.1\|WP_013322370.1\|2553090_2554893_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236018
NC_014501.1\|WP_013322374.1\|2558889_2559456_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322372.1\|2556632_2557757_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239113
NC_014501.1\|WP_013322365.1\|2547576_2548503_-\|protein-kinase-family-protein	unknown	unknown	gnl\|CDD\|270622
NC_014501.1\|WP_157871894.1\|2551751_2552156_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322369.1\|2552182_2552956_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322357.1\|2538048_2539275_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322361.1\|2542134_2543346_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_014501.1\|WP_013322371.1\|2555104_2556583_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|223808
NC_014501.1\|WP_013322375.1\|2559458_2560460_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NC_014501.1\|WP_173362907.1\|2539628_2540579_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NC_014501.1\|WP_013322359.1\|2540571_2541357_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270221
NC_014501.1\|WP_013322356.1\|2536648_2537998_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|273332
NC_014501.1\|WP_013322364.1\|2546946_2547351_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_014501.1\|WP_013322366.1\|2548877_2551076_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226466
NC_014501.1\|WP_013322362.1\|2543674_2546131_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|226481
NC_014501.1\|WP_013322373.1\|2557895_2558870_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381319
NC_014501.1\|WP_013322360.1\|2541538_2542069_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014501.1\|WP_013322367.1\|2551273_2551741_+\|SocA-family-protein	unknown	unknown	gnl\|CDD\|226128

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013322363.1\|2546246_2546735_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	2.40012e-15
NC_014501.1\|WP_013322372.1\|2556632_2557757_+\|nucleoside-hydrolase	gnl\|CDD\|239113	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides. .	4.35178e-75
NC_014501.1\|WP_013322365.1\|2547576_2548503_-\|protein-kinase-family-protein	gnl\|CDD\|270622	cd00180, PKc, Catalytic domain of Protein Kinases. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.	2.0898e-29
NC_014501.1\|WP_013322370.1\|2553090_2554893_+\|aspartate-kinase	gnl\|CDD\|236018	PRK07431, PRK07431, aspartate kinase; Provisional.	0
NC_014501.1\|WP_013322361.1\|2542134_2543346_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.29685e-55
NC_014501.1\|WP_013322371.1\|2555104_2556583_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	3.27014e-70
NC_014501.1\|WP_013322375.1\|2559458_2560460_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	7.35584e-125
NC_014501.1\|WP_173362907.1\|2539628_2540579_+\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.0796e-94
NC_014501.1\|WP_013322359.1\|2540571_2541357_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270221	cd01000, PBP2_Cys_DEBP_like, Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold. This family comprises of the periplasmic-binding protein component of ABC transporters specific for cysteine and carboxylic amino acids, as well as their closely related proteins. The cysteine and aspartate-glutamate binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.77685e-68
NC_014501.1\|WP_013322356.1\|2536648_2537998_+\|amino-acid-permease	gnl\|CDD\|273332	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.96686e-49
NC_014501.1\|WP_013322364.1\|2546946_2547351_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	2.33462e-29
NC_014501.1\|WP_013322366.1\|2548877_2551076_-\|hypothetical-protein	gnl\|CDD\|226466	COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism].	0
NC_014501.1\|WP_013322362.1\|2543674_2546131_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|226481	COG3972, COG3972, Superfamily I DNA and RNA helicases [General function prediction only].	3.18348e-69
NC_014501.1\|WP_013322373.1\|2557895_2558870_+\|aldo/keto-reductase	gnl\|CDD\|381319	cd19093, AKR_AtPLR-like, Arabidopsis thaliana pyridoxal reductase (PLR) and similar proteins. Arabidopsis thaliana PLR (EC 1.1.1.65) is the prototype of this family. It catalyzes the reduction of pyridoxal (PL) with NADPH and oxidation of pyridoxine (PN) with NADP(+), and is involved in the PLP salvage pathway.	3.06538e-140
NC_014501.1\|WP_013322360.1\|2541538_2542069_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.08244e-14
NC_014501.1\|WP_013322367.1\|2551273_2551741_+\|SocA-family-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	1.01636e-34

>NC_014501.1|WP_013322365.1|2547576_2548503_-|protein-kinase-family-protein
MTIKLFSDLEWPLPKKFQSPKKGEIIINNDSKDQYIIGKRINNGNFGNVYECWDEWGNELVAKVLKPNNQTYKKVREDWEKELNKLITLRHPNITYIYDCFEYRNTFYLILERCHRTFKEMIEIYKYENDFLDYLFPYIARDILQAIHFIHQVGYVHKDLHLGNVFVHLVKDKLLPDNTPVWIFKIGDLGISNLEADIDIFNTTLAAWMLPPEYLDPQEYAIKDNGEYRLTKQIDIYHTGLLLLSVLLGYTPPFTEQEILQGSPRQMAENLPLPYGQAIAKALRRHVEFRTQTALKFWQDIKAAIPST
>NC_014501.1|WP_013322364.1|2546946_2547351_-|IS200/IS605-family-transposase
MTRNFTQLYVHCVWATWDRLPLMTPDIQEIIYNAIARQCKQLNCQVIAVGGIADHIHLLTNFPTTITLSKLIGEAKGSSSHLITHEIKPNEFFKWQGGYGVFTVSHSNIDQVANYIRNQPQHHQQKQLISDWEI
>NC_014501.1|WP_013322363.1|2546246_2546735_-|Uma2-family-endonuclease
MQWQEICENKQLQDLPFKIELNKWGQIIMSPARVKHSFYQGIIANLLNSILEQGFAFPECAINTSDNTKVADVVWASDERLKIIENEIAASIAPEICIEVISASNTLEEMQIKINLYLEAKAEEVWLCNENGIMKFYNQQGELEQSLLAPNFPKQIQGFRKS
>NC_014501.1|WP_013322362.1|2543674_2546131_-|pentapeptide-repeat-containing-protein
MQFITTETLDTPGTTGEQIVWQTIQEAFKDRNCIAYWRYPIFSKSGKFRKEPDILIIDQELGIIIIEVKSITINQIININGHQWQYQNYYISSNSPYQQAENQLFALLEYTHQEPALKNQITGRVLIALPLITEQQWQEKNYHKLPTSPPIIFKNHLLQAVFIGGQIEKTLPLTSGANLTQNQWKLLLSILAGNPVHCQPNHQVLSQPESRGKLLQKLRSHISEFDIQQETISKQIPPGCQRIRGIAGSGKTVLLTQKAAIMHLKHPDWKIALVFFSRSLYHPIREQIDKWLEYFSNNEQKYDPKNRNLLILHAWGSRQQPGLYSTLCKYAGVAPLTVQNTSSQQPNEALAEACSQLLKETAIPQIFDAILIDEGQDLIVDNYKFEDKQPFYWMAYQALRSADPLHPQQKRLIWAYDEAQSLDSLKIPTASELFGEKLGHLVTGKYPNNIKKSEIMRRTYRTPHPIITAAHGISMGLLRTGGMLTGMTRKAEWEAIGYQVEGKFIPGQKITLKRPRENSPNPIPELWQGSIIDFQIHASRSSEISSLASQIIHNFRYEGLRPCREILVIVLGTFYEAMRLETHIATFLMRQGIDIFIPGSSDSNILKPEPDQRNPNQFWCEGAVTISRLHRAKGHEADLVYIVGLDQVAKDESNIYLRNQLFVALTRARAWVKISGIGDYVMYDEMRRVIGSGDTFSFTFTRPPKREINVTDAGELLKRYALGGRNFRNADLQEAQLSGICLKGANLIGANLRGANLENAQLDHIKLIAADLSYTNLKGASLRKAKLMGAILEGANLQNTDLTEADLTNTDLNNVKLS
>NC_014501.1|WP_013322361.1|2542134_2543346_-|serine-hydrolase
MKKVYSRRSFGRFLLVLSGLFAGGLLGLFKGKEQAIKPSVASPTRPSASLFSNAKLQEILEQEVTSDHVPGLVMYLSTPKGVWSGGAGLRSLETGQQVQPDDAFSIASTSKTFVAVIVLQLVGENKIKLDQPIAGYLPKDISDHLPYSSEITVRQLLNHTSGVAEYLSTKGFVNAAKNRDRFHPWTAHEAIQFILDRPPRDQPGKTFAYTDSNYILLQLIIEGITGATLAEVTRERILNFCGLKHTYTELWESPAANVATGYTVDGAGKLHSQVNVNDGNGLGDGALMSTAEDLSKFLHCLLVEKRLLSPSLLQEMLTFIRKDAGAVFGISEYTIMGVKGYGLGIEQFNTPYGEAVGHTGSAYGFVSAMLYLRSGDATAIVLANEEGIDPVEIAFDGLKSVFD
>NC_014501.1|WP_013322360.1|2541538_2542069_+|tetratricopeptide-repeat-protein
MDESLPVIYISVLVLLLSVTAIFLFRQIFKTRRLENTFSRLQKKLQKEKGTAKEYYELGSLYLDKKLYVQSVNLFQKALKADDDIETENKALIYNALGYTYYAQEQYELAIRNYKEAIKLYPEYVIALNNLANVYDKKQMAAKALETYEETLKVDPNNSLAKRRAESLRKRFVESK
>NC_014501.1|WP_013322359.1|2540571_2541357_+|transporter-substrate-binding-domain-containing-protein
MIKSQKLLNLSLAIALMTLGLFPWASTRAASLEEIIHRGKLIVGVKDNTRPLGFKNEQGNLQGFEIDVAQRLAQELLGSAEAVILRPVNNLERLQVVIDGTVDITIARVTDTSSRSRVVDLSIYYYLDGTGLVTKNPLIRNRFDAASSRVALLNNSSTIAVIKSEMPNAKLIGVDSYEEALSLLESGQADVFAGDNSILAGWVQEYPQYRQLPVRLSGEALCVVMPKGLQYKSLHNRVNDAIARWQRSGWLQERATYWGLP
>NC_014501.1|WP_173362907.1|2539628_2540579_+|diguanylate-cyclase
MKPFNPEDFLILVVDDLSKNLQLVVDILDHSGYATTFATSGQQAFERVRTAHPDLILLDLMMPEMNGLQVCEKLKSNQEYQEIPIIFLTASDEEGDLLEAFKLGAVDYVTKPFRAAELLARVKNHLELKRTRDELKAAYAQLELLVNIDPLTNVANRRALFKFGEQELYRAQRYHCSFSILLIDLDYFKHINDSYGHAMGDTVLKIVCNAINNSIRQIDLLGRFGGEEFVVILPKTKLKEAIIVAERIRKTISELSLLVGQKTLKITASIGLATYNQKDATLDEVLHRADKGLYLAKERGRNQVVIYDLNEPQEHD
>NC_014501.1|WP_013322357.1|2538048_2539275_+|hypothetical-protein
MKKTFTSFIVTLGLLGLLQSCASVEQKKAATENSASSPNALQTSTGSEATQTAAKVESISSQEPPKQFDEAKAKRLTDTARLLAGMKVEDSSELAKIQNMDVWQNHHHTLENSWAQLNKQQLSKVRNWSDKELSAINSTSPTVFYPFSGPDFLYAYSLFPQGKEYIMIGLEPVGTIPTLSATNTGQVYRKLAEARNSLYALLKFSFFRTNDMKQDMANQGVIPVLYTFLARTNNQILDVELVGIDKQGNVQKMAKGMVPGVKIYFVPQGETTPRTLYYFSTDLSNDGLKKTPEFAEFVKKVNSPVTYLKAASYLMYNDSFSTIRNAILTQSNHVLQDDSGMPVKFFAQQKWNLKFYGNYTQPIGLFSNRYQPDLHKIYQSGKSIKPLNFGIGYKFGVNESNLMLANHK
>NC_014501.1|WP_013322356.1|2536648_2537998_+|amino-acid-permease
MTRIDSVNNERESLSVNVGSSRQITLFTATCLVIANMIGTGVFTSLGFQVVDIQSGFTLLLLWFVGGIFALCGALCYGELGATMPRSGGEYHFLSKIYHPVVGFLSGWVSVTVGFAAPIALAGMALGKYLSSVVPGLNATVVAIVVVIAVSLIHSTNLKAGSSFQQIFTILKVLLIVVFIVCGLDLATPTGISFTPATEDMSLIFSSPFAISLFYVTYSYSGWNAAVYLASEVKNPEKTLPRALFWGTLVVMALYLLLNFIFLYSTPLNKLAGQLEIGYIVADRIFGSSGGKLMALLISLGLISSISSMIWAGPRVTQAIGEDIPLFKLLARKNRYGVPAYAIWFQLAIILVLLITSTFEKVVTYLEFTLILSSFMTVLGVFVYRLRFPNLPRPYSTWGYPITPCIFLGIGLWMLYFSFHAKPIESLAGLATIALGLPIYYFASKKKLA
>NC_014501.1|WP_013322366.1|2548877_2551076_-|hypothetical-protein
MTIGTAIPEFCQGVKHFGQPLPEFEKYGKQAAIKEGQSAVASADDPVAVYQTLLAADALRYLTLQTTATKESGHPGGFASIAEAIASLVMLGHKNIITEVGHHAPGFYSTMFLDRSLEDMGIHTVQQLGERFREMHGLLGHLSGQIPGLLNPAGPLGQGQHFAMAGAKLHRDVLFPVTIGDGGLGEPYIMSSFAHFHTAYPDVTNFLPILVWNGYSQEHHSMVSTKPNEEMIKYWQGNGFQEVILVNAKDFDNANQPGEYVDSTKFSFSQRLAFTQAVLEATDKAAKSAFSGKLTVLIVKQLKGAGVHKRGAQSHNLYPGDSLEKDYIVNALKERALSPEAWDLVRTNFERSAGGPASHHVVTEKELPLPELGELPLTEYAVKGDKKVATTAMGELVVHVGKKDPNFVITNADGNAASGINNINVGLKIVHPTVDDIYYQGPQGQVYEPLSEDACAGLAVGLALFGARTLWCSYESFAINGLPIWQTVTQAMAELRRPTPSTITLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNIFPLFPCDANSIQVCYEWALGTKNKGITITASKSALPVRTTFDQTRQALQDGGVVLHETEGKKQVVFAVVGDMTLIPVFDAAQHLEDQGIGVRIVSVISPRRLYRPDDVMWHTCTDADSHFLDDEGFERLFGGDALIGVTGGTSAMLEPVMLRSTSKRDVFAWKRGETTASAGEIMAFNGLTAEALTKRALSLVG
>NC_014501.1|WP_013322367.1|2551273_2551741_+|SocA-family-protein
MPSCYKIAQFFIRYAHEAGSLLTNLKLQKLVYYAQAWHLAIHGSPLFEEDFEAWVHGPVIPELYQKYKQYKWNPISEDVDKPVLSEELEEFLEEVIDVYFSYDAYELERMTHCEAPWIEARGAIPIDEPSNAIITKESMKTYYATRAELEEEVKN
>NC_014501.1|WP_157871894.1|2551751_2552156_+|hypothetical-protein
MSPKSHSGIKAYQLNPPEGLSFSYKYLDTEHIKFTIKHKDIKYLTTLLERLRDLSKLTAQELRNNPNKTLRCHEINWEDTTESGFGIKGEEQLVDQPYQFSLSANQYGRIHGFFIEEIFYIVWLDPDHKLYSKK
>NC_014501.1|WP_013322369.1|2552182_2552956_+|hypothetical-protein
MKFFLAIILTIFFLISHPIPSQAASLKERLLQYPQWTTKPTLKEAKEDLIYPDWMEGTWKVSSILVDQIAPLAPEIVTPGFENSRQYINQPIEFEVRFQKNHTYHNYKSFLPKIANKKASIVADREFNSLNIAKAYLGGQGVLKVKVDPNNPNRQIIFLPENRQIIYSITKRDSQTPTPHQFISSELTQQMFRSESSIYLNEVETTTAYQLLESGDIKAQQVTAIYLSPKDPQYFQAARSPVSLYHYELQLAKIASP
>NC_014501.1|WP_013322370.1|2553090_2554893_+|aspartate-kinase
MALIVQKYGGTSVGSVERIQAVAQRVKKTVDSGNTVVVVVSAMGKTTDGLVSLAKEISPNPSRREMDMLLSTGEQVSIALMSMALQELGQPAISMTGAQVGIVTEAEHSRARILEIKPDRIEGHLNGGKVVVVAGFQGISNIDELEITTLGRGGSDTSAVALAAALKADVCEIYTDVPGILTTDPRLVPEAQLMAEITSDEMLELASLGAKVLHPRAVEIARNFGVPLVVRSSWSDHPGTRVISPMPKPRSLVGLEITRAVDAVECDPDQAKVALLRVPDRPGVAARLFSEIAHQKVDVDLIIQSIHEGNTNDIAFTVVSDVLTKAEAVAEAIAPVLRIHANSEEAEVLVEKQVAKIAIAGAGMIGRPGIAAKMFTTLAEAGVNIEMISTSEVKVSCVIAQEDADKAIQALCQAFEVNSSPVDTEKPVAENAPPVRGVALDRNQARVAIRHVLDRPGMAAKIFSLLAEKNISVDMIIQSQRCRIVEGQPRRDIAFTVAVGDALVAKAVLDKVAESLGYGEVIVDTDIAKVSIVGAGMVGQPGVAAKFFAALAQEKINIQMIATSEIKISCVVSKEEGEKALKVVHAAFELAGKERVEVPA
>NC_014501.1|WP_013322371.1|2555104_2556583_+|bifunctional-metallophosphatase/5'-nucleotidase
MVTTERCKKFTILHSNDMHGDFLAEVKSGEGNLIGGLSILSGYINKVRQEEPNTLFVISGDMLQGSMIDTEYKGLSTIEIMNYLAPNVVTLGNHELDYGFPHLLFLEKMANFPIVNANLYIKKYNKRLMNPYLILNVDGFDIMFIGIVTEEVLKALKLDTSIGTFVGLEDAAAEVGKICNAYKTEDIDLTILLTHIGFEEDKKLAAMLDPEWGVDIIIGGHSHTFLEQPEKVNNILITQAGVGTDQIGRFDIVVDDDTNSIVEWKWELLPVDKNLAEPDTDLENFINTFKEQVDRKYNRIITRLVRQLTHPRREIETELGNLITDVFAEQLAPDIVLIGSGSIRGTEMGPVVTLADLKKVYPYDGALYKVIVTGAQLKKVFSYIMRPENRRPGEGNCFQINQGIQAIYNDAEKKLESLTIKGNPVEDDAHYSLALQEYHYQNSVVSLSLTPEELTQFGEKKVLTTSAQNVLEEYLVAHQLLDRQIEGRLIYK
>NC_014501.1|WP_013322372.1|2556632_2557757_+|nucleoside-hydrolase
MKKLIVSCLAIILSLLVAVFPASAKNNSSQNKLIHSPTGKGVNQLVASASGGRTPLIFDDDGSQDGMTALSYLLANPKFDIKAITLCQGIADPATFVGNFERMLGRLGVSTDIPLGIGRSEALSGHNTYPQFIRDGAVTFWSPFVKLPETAPTYKTKPAAKLIVETIKKSPEPVTILATGSLTNIAEALRLDPGIIKNISVIEIMGGSVYLPGNLGVVPEPPFSTNKVAEFNIWVDPVAAQEVFKAGEKGLKIQLTPLDATHEISFSREDQQAWLATKTPESEMAAEFLDFALTVIQSGNDPNPVWDLVAAINLAEPNFSPETPLHLEVDTKTAPGENQGQTYVVPNAPPNIYVSLKPSFDNLSFKAGELFSSL
>NC_014501.1|WP_013322373.1|2557895_2558870_+|aldo/keto-reductase
MSEKLTLPLMGCGTWAWGNQLLWGYDPSIDSQLQEVFNYCVANGVTLFDTGDSYGTGKLSGRSESLLGQFSRNYAGANRENICIATKLAAYPWRLTRQSMIAACQASAQRLGKPVDLVQMHWSTANYAPWQEGALLNGLADLYTQGQVKGVGLSNYGPKRLKKVYQKFVERGVPILTLQVQYSLLSTYPVTELGLKQVCDELGITLIAYSPLGLGLLTGKYCEKGPLPKGIRGLLFKRLLPGIRPLLQCLQAVAQYRGKTLSQVALNWCICKGTIPIPGAKSLTQAQDNLGALGWRLSDGEMTELDRTAANLDRKMVQNIFQTR
>NC_014501.1|WP_013322374.1|2558889_2559456_+|hypothetical-protein
MTPEEITTILIDKFGEPLVEHPSEDTWQVDTPEFRLLVIITSDYSGIRLLLPICPASQAQPYLEQLLEANFSSSQLAYYGLHQEVLWGVFSHPLASLTAQDFKNALSELIRLNEEGLSQGFNLFIEKQIRLIVRAAKQQGQSLQATLQSLNRLYAEGMLGGLSQAPQEREQFLAAWKYQLERLWDEES
>NC_014501.1|WP_013322375.1|2559458_2560460_+|thiamine-phosphate-kinase
MSLLGKQVKDVGEQGLLNIVKSFCPAEIIGDDAAVLGVAEGHSLVITTDVLVDGVHFSDVTTSSEDVGWRAVAANLSDLAAMGATPLGITVGLALPAEVQVNWVRGLYQGMRDCLQQYQTVILGGDVCRSSVVTVSITALGQVLPQRVIRRGAAQKGDAIVVTGYHGCSRAGLELLLHPEKGEHLPIDAVKRLIQAHQRPLPRLDVLELLWEFSGPTPVAGMDSSDGLADAIVQICRFSGVGARLASEKIPLSPDLKLLGSFEEMLEWVLYGGEDFELVLCLPYELALPLVKQLGKGAAIIGEIIEEKKIELVDSRGVYPTRLLSLSEGFQHF

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Crispr_ID: NC_014501_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_12

2644547-2644666

Orphan

Consensus_repeat	Method
GGAATGGGAGACTGTTCAACCACTGGGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_12

>merge|NC_014501|12|2644547-2644666|CRISPRCasFinder
GGAATGGGAGACTGTTCAACCACTGGGGGTTGTTGCTCTTGTTGGGGTTTAGGAGATTCTTGTACCTGAGTTTCTGGCTTAATATTATTGGGAATAGGAGACTGTTCAACCACTGGGGGT

>NC_014501|12|9|2644547-2644666|CRISPRCasFinder
GGAATGGGAGACTGTTCAACCACTGGGGGT	TGTTGCTCTTGTTGGGGTTTAGGAGATTCTTGTACCTGAGTTTCTGGCTTAATATTATTG
GGAATAGGAGACTGTTCAACCACTGGGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013322457.1\|2642331_2643312_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|153110
NC_014501.1\|WP_013322447.1\|2630242_2630575_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322453.1\|2635498_2635729_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322454.1\|2639633_2640827_+\|phytochrome-sensor-protein	unknown	unknown	gnl\|CDD\|225822
NC_014501.1\|WP_013322465.1\|2653026_2653680_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_014501.1\|WP_013322459.1\|2646068_2647250_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NC_014501.1\|WP_013322456.1\|2641394_2642276_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NC_014501.1\|WP_013322467.1\|2654236_2654575_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NC_014501.1\|WP_013322452.1\|2634789_2635272_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322462.1\|2650562_2651573_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|177082
NC_014501.1\|WP_041933217.1\|2652677_2653019_+\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|200072
NC_014501.1\|WP_173362912.1\|2653703_2654132_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NC_014501.1\|WP_013322455.1\|2640829_2641216_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NC_014501.1\|WP_013322449.1\|2632573_2633173_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013322450.1\|2633327_2633498_-\|YgiT-type-zinc-finger-protein	unknown	unknown	unknown
NC_014501.1\|WP_173362911.1\|2651827_2652526_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226579
NC_014501.1\|WP_013322460.1\|2647553_2649008_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380492
NC_014501.1\|WP_013322451.1\|2633763_2634261_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933662.1\|2654641_2655211_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NC_014501.1\|WP_013322461.1\|2649032_2650424_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013322457.1\|2642331_2643312_-\|manganese-catalase-family-protein	gnl\|CDD\|153110	cd01051, Mn_catalase, Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenzymes are homohexameric structures; each subunit contains a dimanganese active site. The manganese ions are linked by a mu 1,3-bridging glutamate carboxylate and two mu-bridging solvent oxygens that electronically couple the metal centers. Several members of this CD lack the C-terminal strands that pack against the neighboring catalytic domains as seen in L. plantarum. One such sequence, Bacillus subtilis CotJC, is known to be a component of the inner spore coat that interacts with spore coat protein, CotJA. It has been suggested that CotJC could modulate the degree of Mn SodA-dependent cross-linking of an outer coat component, or the two enzymes could serve to protect specific cellular structures during the developmental process.	2.06164e-82
NC_014501.1\|WP_013322460.1\|2647553_2649008_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	4.2258e-87
NC_014501.1\|WP_013322454.1\|2639633_2640827_+\|phytochrome-sensor-protein	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	7.63353e-57
NC_014501.1\|WP_013322465.1\|2653026_2653680_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.34423e-56
NC_014501.1\|WP_013322459.1\|2646068_2647250_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	6.33091e-148
NC_014501.1\|WP_013322456.1\|2641394_2642276_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	1.81743e-47
NC_014501.1\|WP_013322467.1\|2654236_2654575_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	4.28207e-51
NC_014501.1\|WP_041933662.1\|2654641_2655211_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	2.09153e-90
NC_014501.1\|WP_013322462.1\|2650562_2651573_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|177082	CHL00180, rbcR, LysR transcriptional regulator; Provisional.	0
NC_014501.1\|WP_013322455.1\|2640829_2641216_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	2.47808e-27
NC_014501.1\|WP_041933217.1\|2652677_2653019_+\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.16188e-28
NC_014501.1\|WP_173362912.1\|2653703_2654132_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	1.29255e-22
NC_014501.1\|WP_173362911.1\|2651827_2652526_+\|hypothetical-protein	gnl\|CDD\|226579	COG4094, COG4094, Predicted membrane protein [Function unknown].	2.08132e-69
NC_014501.1\|WP_013322461.1\|2649032_2650424_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.42795e-57

>NC_014501.1|WP_013322457.1|2642331_2643312_-|manganese-catalase-family-protein
MFHHVKELEFNARVSAPDPRFASLLLEQFGGANGELKAAMQYFLQAFAARKPFPDKYDLLMDIATEELSHLEIVGATITMLLDGVNGELKNAAENSMLFNLLSGTQQKEQMIHEAMTNPQFLGLSGGTPTLTNSQGVPWTAAYVNANGDLTVDLRSDLASESRAKIVYEYVMQFTDDPYVKETLGFLMTREIAHYKMFAAALETIEPNFPPGVLQGDPRYTHLYMNMSNGSSVRGPWNEGQGPWEAGEQWEYIHNPYQQVVDTHGLVDQPVKGTQRTPEEAKQLEKKLSIKRSQEIEAVTKSGSTQWSTYPQTNVVSPSQMKDQQL
>NC_014501.1|WP_013322456.1|2641394_2642276_-|alpha/beta-fold-hydrolase
MEKKIAQPSLMLAGSPMNLLTEYLTAGEGPPLLLLHGVGDSADSWKWVIPALAKSYRVYAPSLPGFGGSAKPNVEYSSEFYTSFLTAFLDTLGLQQVSFVGNSLGGLVGIRLALATPERVKTLVLVDSAGLGREVNLIMRLQTLPGAAKMIDLMGQMPMGGKIWAKAFCMLTLAKPNRAKPEWFEGISRMAKDPGYNEATVSALKNLATLAGQRDHQIMLNELSRLTPPTLIIWGEQDRILPVRQAKMAISRLKEGRLEVLSDCGHIPQIEQPERFQTVLSQFLEESVPLPQH
>NC_014501.1|WP_013322455.1|2640829_2641216_+|response-regulator
MNNQTHSPKGKVLIADDDEDSRLLLNVLLSEEGWQVCEAKDGQETLSKVSQESPDILILDNRMPELSGTEVYQYLRQKNTNLAIILITAYPDLEQLAASLGITYFLNKPFNFSDLFDLMNLAYKSLNK
>NC_014501.1|WP_013322454.1|2639633_2640827_+|phytochrome-sensor-protein
MSLLTREILEAGRIYRSTGAIATKLLRQEIYRAWERSHLQGANPRAMQAEKLSPLEVERLLEQQSDFIKVVRPYAQILSQAAGKEHHAVMLADPHAVLIDLLGDEQTVENESFPQPGSLLSEGVAGANGIGTSLAEENYSEIVSAEHFIEGFHDFTCQGIPLRNQKQEILGVLSISLQSPDASHRLKELLLCASAGIEAELILTNLQADLRSVLVSHPDDYEVLEKLRQDIVQAHYTARLRMDLSSRMVASNRIDYAKQLLQQAEQSIEIFRRRANFWRELASTEKDQLKSLSLTETIRNLVEVLSTEAAIRKVQVIAPPFEDIIKITVLEKSFFRKLLRYFLHAFETAGAGGVVKLEVKRKFYTSFAQVNFIIMRGSNSASLSPIFYTLTLPVEEK
>NC_014501.1|WP_013322453.1|2635498_2635729_-|hypothetical-protein
MTVSTSSQSNTGTQNPHYNLISVLYHLLQGAETYDQYIQDAEREGDQELADFFKNLKQASSSTADKAKDLLRQRLQ
>NC_014501.1|WP_013322452.1|2634789_2635272_+|hypothetical-protein
MKVEAKFTSQEAAHNAQNAIQSAGLPLEKISLETQSFIPRTEIRQTQTLKNASTAAVTGGVLGGMIGFFLSLVNSNVPGSVTFVADHSERLMFLITLAGSIIGAAGFGLIGAITGINVPKNVPNAYRDKAADNYLLVVEGNEEQVQTVTEILKQQGGQLA
>NC_014501.1|WP_013322451.1|2633763_2634261_-|hypothetical-protein
MKIKKPVSLYRVIAVFVAGLFLFVLTACGTSSKVLATNAPTSRSNKPADVMQPSDIPQRQDVSGVNEKAETLINGSRQNLERHGVYHGNDKPLLPKKDISDIAGDVQDKAGQGIKDLRENIENSAQEAASALKGAAKNARTAADDVSGKAQRAADQARYRTFDND
>NC_014501.1|WP_013322450.1|2633327_2633498_-|YgiT-type-zinc-finger-protein
MRHCPICSGKTLRHIRNSKIYWYCSHCYQEVPNLNIISALNLDKSNILEFKSGYIY
>NC_014501.1|WP_013322449.1|2632573_2633173_+|hypothetical-protein
MRTQQTLEIRWFNQGKLPANIQQWFDLDCLGKKKQSLDSPEEREDDYLYLPNCQILSFKRREQNLEIKFRVNEFINAQNSDPATSQGNIERWIKLEYNQDILKNIDNFDNYKQQTWIKVKKKRWQRCYKKVNLEICHLQIAQNFWWTMAAEMKENPRNNLQHFKQVISEFSQTYSGQELTAKQSYAYPTWLLESFTGCL
>NC_014501.1|WP_013322447.1|2630242_2630575_-|hypothetical-protein
MSIKIFINLLLLFAEDKTGIIQLTEDHHLGGKTVNTISDLAANPIYGQIQKVIANDKYYEFDNEAKTGDIAAQNGYWIETGGWDCYISSTVDGCDRYINELNTADKLRRI
>NC_014501.1|WP_013322459.1|2646068_2647250_-|DNA-polymerase-III-subunit-beta
MKFTCSQSDLNANLSLVRSAVPNRPTHPILGNVLFVADTEKGLISLTAFDLSLGIRTSFSANVEEDGSITLAAKLLNDIVSRLPEGEITITLEEEDDGEEEQSKVTIESVSGRFQLRGMKADDFPELPTIENVEPVRLPVSALTEGLRGSLFAASTDETKQVLTGVHLSGLQDSLEFAATDGHRLAVVQTPTQQTTEEEDSTPQPESNLEGFAITIPAKALRELERIMTMHKETEAVALYVDEAQVIFELGSQRLTSRKLEGAYPNYEQLIPHQFSRSATLERKRLLSSLERVALLADQKNNLVKFTLAEEKGQLILSVESQDLGSARESMDAQISGESGEIAFNVKYLMDGLKALGAAEIQMQLNQEKQPVIFTPLGGLKMTYLVMPVQIKD
>NC_014501.1|WP_013322460.1|2647553_2649008_-|amino-acid-ABC-transporter-substrate-binding-protein
MSQKNDNLILILALVITLCLVGLGLVWLIPILIKNLNQNNPNSVSITSSNTGASSLPPSPSENSIFSRFSFGDKLLIPTLKNTDKETAATAFAAQNYPIAIQSLETSLKSQKNDPEALIYLNNARIGDKKAYTVAVAVPIGTDVNAAQEILRGVAQAQAEINTTGGIKSIPLKVLIANDDNNSEIAQKLAEEWAKTPEIIAVIGHFGSSTTIAAAKEVYQPQGLVMISPTSTSTEISGIGPYIFRTVPSDRFAGEALAKYMLETLKKQKAAVFFNSQSSYSKSLKDVFTSAVYGDGGEIVAEIDFVEANFNATEAVKIAKQQGAEVLMLAMNTETLKQALWVIQVNQGQLALLGGDSAYKPEILQLGGKNAEGMVIAVPWQILAHKAAKFTLESGKLWGADVNWRTAMSYDAAKALIAAMSVNPTRKGIQETLATRGFSAEGAGTKIRFLPSGDRNQPVQLVRVEPGNRSSYGYDFVPIGIPNN
>NC_014501.1|WP_013322461.1|2649032_2650424_-|serine/threonine-protein-kinase
MEILCTRPGCPRPLNIFPELDDKSILTSTQQKYCTSCGMPLILGGHYMPFRLLGRGGFGAAFLACDRYTPSLRQCVVKQFQPSADLSEQALKKALDLFEREAMVLDTLGRRHEQIPELYAFFPLIVPNRLENKEEQFFYIVQEYIDGKNLEQELEEKGAFSEKEVLYVLKKMLKVLQFVHENPDHPSIHRDIKPSNIMRDRLSGRLYLLDFGAVKQVAVGAASANTQQPSGSTGIYSMGFAPPEQMKGAEVYPSTDLYALAVTCLMLLSGKPAHELYDSYNDCWNWRSHVPQISEQLAAVFERMLLPTPRDRYQSASDVLKALETTTIQPQPPTPPSPQPSPPPTPSPTPRRQFSLLEILGGAAFSGFEGSLLVIAFNSLLSTGGMILGLMLLGGLIFLQSRRIIEGKDLPIIAVITAVLIVALPFLRNNLPTPTVLIIAGFMTLVAVAITSLFRLIYQLLSR
>NC_014501.1|WP_013322462.1|2650562_2651573_-|LysR-family-transcriptional-regulator
MSDIPFTLDQLRILKAIAAEGSFKRAADTLFVSQPAVSLQVQNLEKQLNVPLFDRGGRKAQLTQAGYLLLSYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGLFRQKYPDVSVQLQVHSTRRTSWGVANGQVDLAIIGGEVPPELQETLKIIPYADDELALIMPTSHPLSRLEMIQKDDLYKLQFITLDSQSTIRKVIDKVLTRYDIDTKRLKIEMELNSIEAIKNAVQSGLGVAFVSVTAIEKELQMGVLHRAHIKDIEVTRTLSVVINPNRYRSKAAEALIKEILPQFSTYPDHLDMEFLSGNSNRAKDISASPLNSSLL
>NC_014501.1|WP_173362911.1|2651827_2652526_+|hypothetical-protein
MLTSSHWIMLAMLLGFAIAHSGLAALRSWGETKIGARLYRVLFALVSLPLAAALIIYFISHRYDGVVLWQVQGIAGIKETVWLLSAISFIFLYPATFNLLEIAAIQKPQVHLYETGIIRISRHPQMVGQVIWCIAHTLWIGTSFTLVTSLGLIAHHLFAVWHGDHRLEQRYGEAFRAVKERTSVIPFLAVLDGRQTLKWEEFVRPAYLGVLGFVVLLWWGHPWLSQSLVISR
>NC_014501.1|WP_041933217.1|2652677_2653019_+|thioredoxin-fold-domain-containing-protein
MMLSVNEKNFSKIVLESPCPVLVNFWAPWCGLCRLVVPNLLQFQSEWGGDLTLVSINADDNLRLANAYRLRNLPTLILFDQGLPIQRIEGFHGREEFKRSLKGLMVDYSLQSA
>NC_014501.1|WP_013322465.1|2653026_2653680_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTNKHQQKSREPLSSLFLYNLAKWSIISPALHIYFRGRIYGAEKVPSKGPLIIVSNHASYFDPPILSSAVGRPVAYMAKEELFQIPLLKPLIELYGAYPIKRGSGDLSAFRAARKALAHGWAVGIFLEGTRTPDGRINNPKLGAAMIAAQAQVPLLPVSLIGTEKILHKGSPMPRPSRVIVRIGDLIEPPRSTQRDGLQAVTDKCTNLINEMHGLRG
>NC_014501.1|WP_173362912.1|2653703_2654132_+|acyl-CoA-thioesterase
MMTYYRTIRLADTDAAGVVYFAAALSICHEAYEASLEQSYINMRTFFSDPNVAIPIVYGEIKFFAPLYSGDQLEINLFPKQLTDSEFEIKYELVKVAPNAEKVALAQTRHVCIHPNPRRRSPLPDLMVQWLDHCATPEAVDI
>NC_014501.1|WP_013322467.1|2654236_2654575_+|P-II-family-nitrogen-regulator
MKKVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGMTERYRGSEFTVEFLQKLKVEIVVEDNQVDMVVDQVIKAARTGEIGDGKIFISPVEQIIRIRTGEKNQEAI
>NC_014501.1|WP_041933662.1|2654641_2655211_-|type-1-glutamine-amidotransferase
MTQQLQDKKVAILVAEGFEQVEMTQPRQALEEVGAQTHLISPKGDKVQGWNHFDKGEEFPVDVVLDEADPSNYDALLLPGGVANPDLLRTQEKAVQFVKSFFEAGKPVAAICHGLWTLIEADVIRGRTVTSWPSLKTDLRNAGANWVDQEVVVDQGLVSSRKPDDIPAFNRKLIEEIAEGQHEQQRLSA

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Crispr_ID: NC_014501_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_13

3470803-3470892

Orphan

Consensus_repeat	Method
AGCTTGCTCAATTTCTTGTAACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_13

>merge|NC_014501|13|3470803-3470892|CRISPRCasFinder
AGCTTGCTCAATTTCTTGTAACTGGGCCTGATGGTCCGCTTGTAACTCTTCAATAACAACTTGATTAGCTTGTTCAATTTCTTGTAACTG

>NC_014501|13|10|3470803-3470892|CRISPRCasFinder
AGCTTGCTCAATTTCTTGTAACTG	GGCCTGATGGTCCGCTTGTAACTCTTCAATAACAACTTGATT
AGCTTGTTCAATTTCTTGTAACTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013323170.1\|3476454_3477258_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372582
NC_014501.1\|WP_013323174.1\|3482347_3482692_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323161.1\|3464335_3465724_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NC_014501.1\|WP_013323171.1\|3477334_3478879_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|130850
NC_014501.1\|WP_013323176.1\|3484119_3484665_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|178534
NC_014501.1\|WP_013323177.1\|3484952_3486128_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NC_014501.1\|WP_013323157.1\|3460081_3462130_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NC_014501.1\|WP_013323154.1\|3455491_3456913_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_014501.1\|WP_013323178.1\|3486141_3486834_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|213993
NC_014501.1\|WP_013323155.1\|3456985_3457996_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_014501.1\|WP_013323156.1\|3458087_3460052_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NC_014501.1\|WP_013323172.1\|3479155_3481006_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_014501.1\|WP_013323158.1\|3462203_3462758_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_014501.1\|WP_157871917.1\|3465766_3465973_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933263.1\|3466028_3467465_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_014501.1\|WP_013323159.1\|3462844_3463540_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323167.1\|3473076_3475914_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|173886
NC_014501.1\|WP_013323166.1\|3471671_3472610_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133042
NC_014501.1\|WP_013323160.1\|3463648_3464104_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_014501.1\|WP_013323175.1\|3483187_3484021_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013323178.1\|3486141_3486834_-\|PHP-domain-containing-protein	gnl\|CDD\|213993	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound. The PHP domain of this HisPPase family has an unknown function. It has a second domain inserted in the middle that binds adenosine 5-monophosphate (AMP). The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to give histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to the other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	4.50739e-52
NC_014501.1\|WP_013323170.1\|3476454_3477258_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|372582	pfam13369, Transglut_core2, Transglutaminase-like superfamily.	4.60691e-69
NC_014501.1\|WP_013323171.1\|3477334_3478879_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|130850	TIGR01790, Uncharacterized_carotenoid_cyclase_DR_0801, lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.	1.19513e-07
NC_014501.1\|WP_013323177.1\|3484952_3486128_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	5.01723e-136
NC_014501.1\|WP_013323161.1\|3464335_3465724_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NC_014501.1\|WP_013323167.1\|3473076_3475914_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|173886	cd01951, lectin_L-type, legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.	4.16653e-46
NC_014501.1\|WP_013323157.1\|3460081_3462130_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NC_014501.1\|WP_013323155.1\|3456985_3457996_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.03358e-94
NC_014501.1\|WP_013323156.1\|3458087_3460052_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	5.35515e-159
NC_014501.1\|WP_013323175.1\|3483187_3484021_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.12268e-23
NC_014501.1\|WP_013323158.1\|3462203_3462758_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	5.32321e-38
NC_014501.1\|WP_041933263.1\|3466028_3467465_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	3.7346e-86
NC_014501.1\|WP_013323172.1\|3479155_3481006_+\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_014501.1\|WP_013323154.1\|3455491_3456913_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.02059e-68
NC_014501.1\|WP_013323166.1\|3471671_3472610_-\|glycosyltransferase	gnl\|CDD\|133042	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix.	1.18729e-27
NC_014501.1\|WP_013323160.1\|3463648_3464104_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	2.99246e-30
NC_014501.1\|WP_013323176.1\|3484119_3484665_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|178534	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.	3.63037e-94

>NC_014501.1|WP_041933263.1|3466028_3467465_-|SpoIIE-family-protein-phosphatase
MTAVPIYRQPSSNTSATDSNKPADTKPVLALKELVASLYREQNKIQNLLSSLGFALRSFNNLNQFLELTPLMAARVTDADGGALILFKSNGRISLEQLHCQDNQVTGQLRRELEQIVRQLNVSDHQISDNFPLSLPEYLDRQIRQALGTTIQLYSTPVLVKNTERGRLYVFSSDPEYIWTQTRRKLLQLVADQTAVAIANNELTIELRSKERQDRELEIASEIQLRLLPRKCPLIKGVDLAASCKTANRVGGDYYDFIPTNYDQLSQTTEGKVESPAACVPWSIVIGDVMGKGVPAGLIMTMTRGMLRAEVLNRHTPAQILEHLNRVMFADLENSHRFVTLFYSEYDPQSRILSYSNAAHHPPLLWQASTGVIQRLDTEGGMLIGLDPESQYENAQIELAPGDTIIYYTDGFTDAVNQSGERFDEENLIRVFQQACQNYEHPQAILDDLFDKVNAFTGSDKTNSDDMTLVVMKVKSQE
>NC_014501.1|WP_157871917.1|3465766_3465973_-|hypothetical-protein
MLPPEQIVSSLRDTIPSLMFWLARLDPKDTDVIAQFQQSFKHFVQSGQVWALLIGVVIGYLFRGFTSY
>NC_014501.1|WP_013323161.1|3464335_3465724_-|argininosuccinate-lyase
MADKKTWSDRFEGSLHPAIALFNASIGFDIELIEYDLTGSIAHAKMLAHTGIISDSEAQQLVSGLEQIRSEYREGNFNPGIDQEDVHFAVERRLTEIVGDVGKKLHTARSRNDQVGTDIRLYLRDQIEQIRVQIREFQQVLLFHAENHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDWERLGEIKKRTNISPLGSGALAGTTFPIDRHYSAKLLEFEGVYINSLDGVSDRDFAIEFLNAASLIMVHLSRLSEEMILWSSQEFSFISLTDSCATGSSIMPQKKNPDVPELIRGKTGRVFGHLQGLLVLMKGLPLAYNKDLQEDKEALFDAVKTVKACLEAMTILLQEGIKFRTERLAQAVAEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSLAAGKLLKDLTLEEWKQLHPAFEADIYAAIAPSQVVAARNSYGGTGFEQVRRAIETAKSQLEEP
>NC_014501.1|WP_013323160.1|3463648_3464104_-|NUDIX-hydrolase
MFRAWQFLTTVIGVIFRHPVTGTTIIPILPDGRIVLVRRQDTGQWGLPGGIIDWGEEISTTVRRELAEETGLELLKICRLVGVYSSPERDPRLHSISILVEAEVQGALGVKDNLEISEARAFARDELPLGNLSHDHDRQLQDYLKGLTVVA
>NC_014501.1|WP_013323159.1|3462844_3463540_-|hypothetical-protein
MSFFNSTEPILRRKQQALDYQDIKGLLQIDWKISNRRLFSGFYTRIDQAFVLWGLISAVIFLTAQFAPISWITQAIFWTILTVLGTIAMMGLTQFWVRVERLEWVLYCWGFLMILGVVITDCGIFLGWSSVLLHLSHLWLGLSGLGYLCTALGLRSRAFLLSGIFHLLGIAVLPYVMGWQFLTTGLLIVVNLFLLAETQWDMCPPIHNYALLTVEQCEFNQQQHRLRQLEH
>NC_014501.1|WP_013323158.1|3462203_3462758_-|Uma2-family-endonuclease
MLQSSYINDQELMLLSRQNPQFRFERNADGTLKTMTPTGKISGNREAKAIAYLLTWVEKNNLGEVFSSSCGVKLPNGAIRSADAIFVARERLPEGWDQGEDEFLNIVPDFVIEIRSKSDNLEDLKTKMQEYIENGVKLGWLIDRKNKQALVYRADGSMTQYPEDSLLSGEGVVPGFTLSLRSML
>NC_014501.1|WP_013323157.1|3460081_3462130_-|NAD-dependent-DNA-ligase-LigA
MASATPEIQQRVEQLRSELQKASYAYYVLDNPIMEDAVYDQLYRELENLETQYPELITPDSPTQRVGDKLSEQFTSVKHHIPLYSLENAFNLEEFTRWQERWQRIAPETKQFEYVCELKIDGSAIALTYENGLLVRGVTRGDGVVGEEITQNIKTIRSIPLRLQSDHPPARVEVRGEAFLPVEEFERINQEKAATGESLFANPRNAAAGTLRQLDPKIVDRRRLQFFAYTLYIVDTENQSYPQTQWESLEFLQKIGFLVNPNRKLCQSLEDVEQYYQHWDTRRRNLPYMTDGVVVKINDYDLQKQLGFTQKFPRWAIALKYAAEEAPTRVKNITVNVGRTGAVTPMAIMEPVQLAGTTVQKATLHNSDRVAQLDIRVGDTVIIRKAGEIIPEVVRVISELRPANTQPYQMPTHCPECNSTLVRPKGEAVTRCVNSSCPAILRGSLVHWCSRDALDIRGLGEKVVILLIENELVKSIVDLYGLKAEQIASLERMGTKSANNLVNAINKSKQQPWSRVLYGLGIRYVGNVTAKILTDNFPTVEQLSRASFASLESVYGIGSEIAQSVSDWFKIEANLTLVKQLQQAGLQFETATVTKNTSESTPTPLKGKTFVITGTLPSLKRNEAQQLIEEAGGKVTGSVSAKTDYLVVGEDAGSKLAKAQQLGIIQLSEEALLAMIQGKNPP
>NC_014501.1|WP_013323156.1|3458087_3460052_+|single-stranded-DNA-specific-exonuclease-RecJ
MRLPNQRWLISSSAPEIVEQLVETTGLLPIMAQVLINREINTPELAQVYLEPESLLLPSPLEEFSDLAVSVELLEEAISSGDKIAICGDYDADGMTSTALLLRALRHLGADVDYAIPSRMKEGYGINTRIVEDFAKSGVGLILTVDNGISAYEPIARAIDLGLSVIITDHHDLPEKLPPADAILNPKLLPSSSPYRGLAGVGVAYILAVTTAQNMGLLKGLTDQLLELFTLGTIADLAPLIGVNRRWLKRGLRKLPKSQLAGVQALIQMSGVSDEQKELKPDDIGFRLGPRINAVGRIGDPQVVIELLTTEDEGLALERAMQCEQINQKRQQLCSKIEEEAVNLIETIPINWQQDRVLIIVQPHWHHGVIGIVASRLVERYGAPVFIGTYEEEEPDKIRGSARGIEEFHVFEALEFCHDLLGKYGGHKAAGGFSFPAKNLEAFKQRLSTFAHQCLKPEFLKPLVKIDAQADFNQLNPYLYGQIDGLQPWGIGNDFPIFWTPNVRVIEQKVVGQKHLKLILAQEDGTEIKAIAWRWSQYFPLPMCLDVAYKLKENHWNGNTNIELELVGVRVPVAAQATKKAVFEINGRSYACSFWESLNELRIRNEQGKVLAVNKGQRIGLLGTRRDNAQKIDVTQPHYYQLIKAAMAALQIEK
>NC_014501.1|WP_013323155.1|3456985_3457996_+|glycosyltransferase-family-2-protein
MNSRNGSVKYSLIIPIYNEEEIISEMYRRVSAVMERLDDTVELVLINDGSRDNSLNLMRELHLCDPRVCYLSFARNFGHQIAVTAGLNFARGQVVVILDADLQDPPELIPKMIEKWQQGYQVVYAQRVKRKQESWFKRLSAYIFYRLLRRLADVDIPADTGDFCLMDRQVVDLLNAMPERNRYIRGLRAWVGFRQTAIAFEREPRFAGEVKYTFSKSLSLAINSLISFSKVPLRLSSYLGLLSAGVALLMAILVLYWRLYEPHSPVTGLATIMIAIFFLGSVQLICLGILGEYIGRIYEEIKGRPLYTLAEVGGFDKFNQYSVALNSLNDHQNWPN
>NC_014501.1|WP_013323154.1|3455491_3456913_+|LCP-family-protein
MSKFKTYPKSQPVEEKQPVKKKPRPKKFFAQWLFVGLGLTGVALVSATAGALLAVSLSTTPLRQAKLSPQEQAVFNQDETVAYKNLHLPELSRPVNILILGTKVLTSDLDNPPENQKDLGYQALVNSFHGLTDTMLLLRFEPTQEKLAVLSIPRDTQTLIEGHGLKKINEANYYGGPALTAQTVSNLLDGVPIDRYVRVNIQGVEKLIDALGGVTVYVPKDMKYRDDSQHFYVNLKKGEQHLNGEQAAQFLRFRYDEYGDIGRIQRQQMLLRALIEQALKPQTLLKIPDIVSVIQSNIDTNLSVEELVALAGFAGQTQRSKIQMLMLPGGFSGDGKKEVSYWIPYERQIKTMVAQYFDHGYNEEQPVVNDPTSLRIAIQDSTGDPEAVQAMVRYLQEKGFRRIYVSEQWPEPLTVTRIVAQKGDDSGAAQLRANLGVGEVLVESTGNLASDVTIQLGKDWQQKHSKETQASQL
>NC_014501.1|WP_013323166.1|3471671_3472610_-|glycosyltransferase
MFFSIVIPTYNRKPILEKCLIALEHQQLSDHKVQGYEIVLVDDGSTDGTLLWLADHKDQFPHVRSLCQDHQGPAAARNLGVNESLGDTIIFIDSDLVVTEQFLQSHADALIEAEKKLGSDRLFTYGWVINTCNFDDPTSEPYKITDFSAAYFATGNVAIAKKWLLMAGLFDTRFQLYGWEDLELGVRLKKLQLTLIKCPAAVGYHWHPPFKLDQIPALIDKEIQRGRMGVLFYQKHPHWEVRLMIQMTWLHRILWGVLSVGGRLNEHTMAPLLQWLINQGKPQLALEIARIFLNWYNVQGVYAAYKEMQQQS
>NC_014501.1|WP_013323167.1|3473076_3475914_-|PQQ-dependent-sugar-dehydrogenase
MTLIDSPDIIPLNLNSPGSLTLNEDPIIPVSSASAPLNIEALQTTANSINANKIQFPNFSDISAFKLNGSARQIDNVLRLTNDNTNERGTAFLTNKIDITPNTFFETQFQVNLYGKQKTNGADGLTFIIQNTPSGASALGSATAGGGGLAYKNLGSSIAVAFDTFKNKWDVGNNNLSLLQDGKVEKPLVTQSSPLDLNGGKPFYAWINYDAIANLLQVFLSESANKPTSPVLNYEVDLASAVGSQAWIGFGAATGALYNAQEILNWEFTSYERINHKPNTPAITEPNVAGKIVIAGDVHMETSDFVDANDPSDTHLYTDWEIWDVARNQVAWQAYNIRGIEKLHIHLGDGEFVNSYLGRSELFASTDYKLRARHADNYGLTSDWGEMPFKTASAMTVFPLTLDNIEDESKPEWRDSNNGNPIILPNSTTQPFLSLESPSSETLLQFKGLDGISNQIVNAPALNQHKNVRLRISAGSSSLNLPQSQVTFTDETAKSYSIYLPAISLAAGQQNYFWVSTNGTTYVGTNTQTRPDFSKVAQGTLNPWRVTQSGYKVEKVATGFQLPVNIAFVPNAKPDDPQDPSDDNDPYYYVTELYGTIKVVSKKGTVSNYATNLLNYNVLGSFPGSGEQGLSGITVDPQNGDVLAALLYSPNPKNDLAPHYPKVVRLRSSDGGKTASSQTTILDMVGEIQGQSHFISNLSIGPDGKLYVHMGDGFNTSTALNLNSFRGKILRLNINGADPKLDGTPSQDNPFYNKGDGITAKDYIYAYGLRNPFGGAWRAADNSHYSVENGPGSNDRFAKITPGTNYGWDGTDASMTINALYNWTATNAPVNVAFIQSETFGGSGFPLNGPTSKEGHAFVSLSGPTYVGGRTTRGKRIDEFILDENGNLKSDPISLIEYDGVGKATVVGLAAGPDGLYFSDLYKDLDYTSPIDRGANIWKISYVKG
>NC_014501.1|WP_013323170.1|3476454_3477258_-|tetratricopeptide-repeat-protein
MTMQNFYQEIHQPDAQIDLAKASLYLAQQEYPKLDIDEYLNALDTMAQEIKERLPDSFYPLKIIQTINHYLFEDLGFEGNRTDYYDPRNSFLNQVIDRRTGIPITLSVVYLEIAKRLDFPMVGIGMPGHFIIRPNFEEAGIFVDAYNQGEILFEQDCEQRLQEVYQQPVKLEPHFLEPVTNQQILGRILTNLKYIYLNGQQFFKALTILEYILLIFPNHPLELRDRGLIYYHLGETQKASQDLGFYLALLPDAQDAQVIRQLLEKMN
>NC_014501.1|WP_013323171.1|3477334_3478879_-|FAD-dependent-oxidoreductase
MTLTEPLVSLLEHDVLERLRKADQLLQGLRTQPISVPCVVKESSQSLGSVDWDVVISGGTLGILLAAALQQQGYRIAVIEQGILRGREQEWNISRQELTVFLELELLTEAELTTAIATEYNPARVSFFQGYELWVKNVLNLGVDPVFLLETLKNKFLHHGGKLLEKTPFQAATVHPDGLVVKAGDISLKSRLFIDAMGHFSPVAKQARNGHKPEGLCLVVGSCAKGYDKNESGDLIASITPILNQCQYFWEAFPARDGRTTYLFTYLDTHPDRFGLEFFMEEYLKWLPIYQNVELEKLHFERFLFGFFPSYRQSPNKTPWHRILAVGDSSGSQSPVSFGGFGAMVRHLKRLTDGITEALKADVLDAYALSLLQPYQPNISVTWLFQKTMSVAMNQKAEPNQINNLMSGVFQVMDQLGEDVLKPFLQDVIQFPALAKTLILVNPKLVLPLLPQVGISPLVDWSFHYFNLALYSGLFPLGKLLNPIANNLPDIPKYYYHRWLDAWKYGSGKDYHNS
>NC_014501.1|WP_013323172.1|3479155_3481006_+|penicillin-binding-protein-2
MRTIDFLPKPRAKKSPSPKRTSQPSFAQDRRQETGRTVGRQYQSILMMLLISLVLLGGVGARLFYLQLSQGEVYREKAENNRIRIVPKQPVRGNLFDRKGRVLATTRLTHAAYLWPMAQKRENWPENRRRIAELLGVSEKSIEEKVQQAGFNSPTLIRIARSLTPAQITALEEYRSQISGIEVDIETVRDYPHKKIASHVLGYTGELDAEELKQRRSEGYRMGDVVGKMGVEAAYEQQLRGEWGGLQLEVDGAGKVMRVLGQKAAKPGKDVTLTLDLNVQKAAEAALGNRKGAVVALDPRTGAVLAMVSYPRFDPNVFSSQITPAIWKELQETKPFVNRAMRGFPPASTFKVVTQTAGMESGKYPPNTILGTFAYLNVGGTAFGEWNRAGFGPLGYVRALAMSSNTFHGQIGRGVGGPTLIKYAHIYGFGSKTGIEIPGEVPGLIADDAWKRKMLNWGWTDGDSVNMSIGQGFTQATPLQIAVMFAVPANGGYRVRPHLLADSTKKADQWRTNLHFKPTTIKTLREGLRAVVTSGTGKGLNVPYLPPVAGKSGTAEAPPGKSHTWFGGFAPFDNPEIVAVAFVEHSGGGGGSVAGPIVRQVMEAYFNKKPPNPNSK
>NC_014501.1|WP_013323174.1|3482347_3482692_-|hypothetical-protein
MSYSFDIIGITPVLTFFNYQQQHEHNPHRGKTHLGSYECSLDSFIKSTKMVPSRPNWDWDEVTNIMIKFWLKNEDKIRYWKNELTRGKQEENIIVARVVNFEALRNELESLFEA
>NC_014501.1|WP_013323175.1|3483187_3484021_-|tetratricopeptide-repeat-protein
MIRWILILLTVVLIWSGAGNEFRTGGQSAWAEPVVSSSITEQQIKQGEALAQKAFEATDKGDFPAAEQYWTQLIEQFPTNPAVWSNRGNCRVSQFKLDEAIADFNKAIELAPDSPDPYLNRGTAFEAQERYSEAIADYNQVLALDPSDPMAYNNRGNAQGSLGHWQEALADYQKAIDIAPNFSFAQANVALALYETGHKEEATRKMRSLVRKYPMFPDMRAALTAVLWEQGKQGEAESNWVAAVGIDNRYQDLDWVKNIRRWPPQMVAALDKFLNLN
>NC_014501.1|WP_013323176.1|3484119_3484665_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTNQQPTTAAPKIQVGIIMGSDSDLPTMKEAIAVCEEFEVSWEVAIVSAHRTPTRMVEYAQSAHQRGIKVLIAGAGGAAHLPGMVASLTPLPVIGVPVATRHLGGVDSLYSIVQMPGGIPVATVAIGNAKNAGLLAVQILATHNPDLQVKVQQYRENLSQSVLDKQSKLEQLGYQQYLERM
>NC_014501.1|WP_013323177.1|3484952_3486128_+|N-acetylglucosamine-6-phosphate-deacetylase
MITIINALIPGSEELQQIEITGSEIAAIKPMREGVAKKEKPSIIDVEGDWISLGGIDLQINGCFGLAFPDLTLEDLPRLEKICDFLWTKGVDGFLPTLVTTAVRKFQRSLLVLEEFIAEQKQNNRTTAQVLGVHLEGPFLNYEKRGAHPAEYLLTASLEALEGIITNHESIIKIMTLAPELDVTGQVINYLHSRGIIVSLGHSQATAKEARQAFEKGASMVTHAFNAMPSLHHRQPGLLGEAIVSKNVYCGVIADGHHVAPTMLKILLRACEYERGAFLVSDALAPLGLPDGIYPWDERKIQIEKGTARLASGKLAGTTLPLLTGVENLVKWDICKVESAIALATESPRKAIGLPGLSVGQKANLLRWNWQQELNKLTWQRLDLGWMHTDD
>NC_014501.1|WP_013323178.1|3486141_3486834_-|PHP-domain-containing-protein
MVVTSATQAEAQNTKALREVWATIDFNSCPYHYNFHMHTTCSDGQLSPIALIEQVLKIGLKGLAITDHHSTQGYQIAQERLNDLRLHQPNTLLPHLWTGIEITSNLLGAEVHILGYGFNPQHPVMNSYLKGVRPLGEDAQAKTVIDALHQAGGLVVLAHPARYSRSAQELIPAAAGLGVDGIEAYYAYGNPKPWQPSPKQTELVLKLAEVYGVFTTCGTDTHGVNLLYRL

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Crispr_ID: NC_014501_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_14

3866790-3866878

Orphan

Consensus_repeat	Method
GAAGGTGGTGAAGGCGGCGAAGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_14

>merge|NC_014501|14|3866790-3866878|CRISPRCasFinder
CAAGGCGGTGAAGGTGGTGAAGGCGGCGAAGGCGGCGAAGATCAAGGAGGTCACGGAGGCCATAAAGATGATCAAGGCGGCGAAGGTGG

>NC_014501|14|11|3866790-3866878|CRISPRCasFinder
CAAGGCGGTGAAGGTGGTGAAGGCGG	CGAAGGCGGCGAAGATCAAGGAGGTCACGGAGGCCAT
AAAGATGATCAAGGCGGCGAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_041933285.1\|3858976_3859198_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323501.1\|3865548_3866553_+\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|259910
NC_014501.1\|WP_013323507.1\|3874303_3875890_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NC_014501.1\|WP_013323508.1\|3875901_3877032_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_014501.1\|WP_013323506.1\|3872027_3873107_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375541
NC_014501.1\|WP_049802576.1\|3877521_3878148_+\|inclusion-body-family-protein	unknown	unknown	gnl\|CDD\|372030
NC_014501.1\|WP_013323492.1\|3851002_3851203_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323497.1\|3861263_3862175_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|178283
NC_014501.1\|WP_013323512.1\|3880749_3881109_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323494.1\|3859783_3860365_+\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NC_014501.1\|WP_013323504.1\|3868501_3870916_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NC_014501.1\|WP_013323505.1\|3870962_3872003_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_014501.1\|WP_013323495.1\|3860749_3860932_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323493.1\|3851344_3853378_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320697
NC_014501.1\|WP_013323510.1\|3878156_3879137_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NC_014501.1\|WP_013323499.1\|3863073_3864594_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323503.1\|3867559_3868222_+\|Fe2+-dependent-dioxygenase	unknown	unknown	gnl\|CDD\|235483
NC_014501.1\|WP_013323511.1\|3879279_3880245_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_041933806.1\|3862417_3862948_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_014501.1\|WP_013323500.1\|3864747_3865398_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013323504.1\|3868501_3870916_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.907e-81
NC_014501.1\|WP_013323501.1\|3865548_3866553_+\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|259910	cd11024, CuRO_1_2DMCO_NIR_like, The cupredoxin domain 1 of a two-domain laccase related to nitrite reductase. The two-domain laccase (small laccase) in this family differs significantly from all laccases. It resembles the two domain nitrite reductase in both sequence and structure. It consists of two cupredoxin domains and forms trimers and hence resembles the quaternary structure of nitrite reductases more than that of large laccases. There are three trinuclear copper clusters in the enzyme localized between domains 1 and 2 of each pair of neighbor chains. Three copper ions of type 1 lie close to one another near the surface of the central part of the trimer, and, effectively, a trimeric substrate binding site is formed in their vicinity. Laccase is a blue multi-copper enzyme that catalyzes the oxidation of a variety of organic substrates coupled to the reduction of molecular oxygen to water. It displays broad substrate specificity, catalyzing the oxidation of a wide variety of aromatic, notably phenolic, and inorganic substances. Laccase has been implicated in a wide spectrum of biological activities.	2.23937e-52
NC_014501.1\|WP_013323508.1\|3875901_3877032_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.4076e-91
NC_014501.1\|WP_013323507.1\|3874303_3875890_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	9.13931e-31
NC_014501.1\|WP_049802576.1\|3877521_3878148_+\|inclusion-body-family-protein	gnl\|CDD\|372030	pfam12306, PixA, Inclusion body protein. This family of proteins is found in bacteria. Proteins in this family are typically between 173 and 191 amino acids in length. PixA is thought to be specifically produced in Xenorhabdus nematophila. It is an inclusion body protein.	2.96062e-54
NC_014501.1\|WP_013323497.1\|3861263_3862175_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|178283	PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.	9.35108e-59
NC_014501.1\|WP_013323506.1\|3872027_3873107_-\|hypothetical-protein	gnl\|CDD\|375541	pfam18087, RuBisCo_chap_C, Rubisco Assembly chaperone C-terminal domain. This is the C-terminal domain, also known as the beta domain, of Rubsico Assembly Chaperone protein (Raf1). Raf1 is necessary for rubisco to catalyze the rate-limiting step of carbon fixation through carboxylating the five-carbon sugar substrate ribulose-1,5-bisphosphate. The beta domains primary function is dimerization, which is critical for Raf1 to achieve the necessary avidity for complex formation with RbcL (the large complex sub-unbit of Rubsico) assembly intermediates. The beta domain is also involved, to a small extent, in binding to RbcL with use of the lustiness near the beta domain's conserved top surface.	9.95464e-67
NC_014501.1\|WP_013323494.1\|3859783_3860365_+\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	6.27984e-52
NC_014501.1\|WP_013323505.1\|3870962_3872003_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.98437e-19
NC_014501.1\|WP_013323493.1\|3851344_3853378_-\|M48-family-metalloprotease	gnl\|CDD\|320697	cd07338, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	6.81064e-45
NC_014501.1\|WP_013323510.1\|3878156_3879137_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.8154e-14
NC_014501.1\|WP_013323503.1\|3867559_3868222_+\|Fe2+-dependent-dioxygenase	gnl\|CDD\|235483	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional.	1.41595e-117
NC_014501.1\|WP_041933806.1\|3862417_3862948_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	5.66877e-95
NC_014501.1\|WP_013323500.1\|3864747_3865398_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	7.67456e-13

>NC_014501.1|WP_013323501.1|3865548_3866553_+|multicopper-oxidase-domain-containing-protein
MTLFSDLKESKNSFWTRRKLLISGLSGIGAASAAIAVSYQKRRSSLAVKIPPLPEKAEVAEGFNPITVLRDFNYGTLKRENGKTVREFEVVAKSSTLQLNSAISFVSWNLNGRVPGPTLRAIEGERVRIIFHNQDGHSHSIHFHGIHPEDMDGVKPVRHGKSTIYEFNVSPYGLYPYHCHIAPVTRHISKGLYGLLIVDPKKGRPPADEMVMVMGAYDINNDEQNELYAFNGIPNYYRDHPIPIYQNQLIRLYVLNMVEYNPALTFHIHANLFRVYRSGRTLTPNEETDVITMGTAERHILEFSYPYTGRYMFHPHQDFAAELGCMGFFNVLPT
>NC_014501.1|WP_013323500.1|3864747_3865398_+|class-I-SAM-dependent-methyltransferase
MLLRPEQRTKLDPTEDDLFYSYPRFVTHVDDQFIDQLSELYREKLKPHTRILDLMSSWVSHLPEEMVFAHVEGHGLNEEELAKNPRLNHYIVQNINANPKLPFNDQEFDAVLNAVSVQYLQYPEAVFSEIYRILKPGGLAIISFSNRMFYQKAIAAWRDGTESSRVQLVKSYFQAVSGFSQPEVVVRQPSLPAFLQMFGLAGVDPFYAVIAERLPA
>NC_014501.1|WP_013323499.1|3863073_3864594_+|hypothetical-protein
MKSIPKLKFKLPRFKRLQVKRLQGFDWVVMICILSLAVAITAILWRGDQVPFQVTHFSWDGKQIGIKDRYFTLSFNRPVNPQTVEQNLVTNPPLPGKTSWSGPKLVYTLTELPIYGTKYEIQLTDATPTYSNQAIEPFISVINTHDRAFAYIGIEAQERGRLILCNIIQSNQSTTQLKKVILTPEDLVVTNFEIYPQGDKILFAAFDPSKGTEGLNQQQLYTVTTGLNFLLSEQREPSGRLQRILDAKDYKNLQFDLSDNGKTIVIERENQRNRADAGLWVIPEDGKPRPLGLQANEFIVAPDGQTVAVSQDQGVGIIPLTPGSGSPQFFQGYEKVVGFSKDGTQKLLVKNNSDFTRSLLLVNKDGKGKQLLQTHNPIISCKFEPRQETTLYCLKTDLVEQEKEKYREEPFLSIVDLKTGKDIPFLALPNYRDVQMSMSPDGVALLFDQLVTTPLNLKNNLVTQGGQGIADGRLWLLPLPEEVTEQNLVKILPEELNPGFKPRWLP
>NC_014501.1|WP_041933806.1|3862417_3862948_+|translation-initiation-factor-IF-3
MNNTKRPQRDQPQINERIRFPQIRVIDNDGSQIGIMTPDEALRIAEEKELDLVLVSETANPPVCRVMDYGKYKFEQEKKAREAKKKQHTADVKEVKMRYKIDDHDYNVRVNQAQRFLKSGDKVKATITFRGREIQHANLAEELLQRMANDLQEIAEVQQAPKKEGRNMMMLLSPKK
>NC_014501.1|WP_013323497.1|3861263_3862175_-|alpha/beta-fold-hydrolase
MTIAENWEQRIGYQRDWVWRGWQVRYSYKRCEAENDKLYPSVILIHGFGAAIEHWRNNIGVLSQRHRVYAIDLLGFGASRKVYTNLTVDLWVEQVYDFWRTFIGKPVVLVGNSLGSLVCVVAAAKHPEMVKGIAMLSLPDFSARQAVVPQWVQPIVDNIERVFSSPIFIKPLFQFLRRPGVIRRWASIAYYDHKAITDELIAILAAPPQDEGAERMFCLLCQRVSNPEVFPSAKTILERLDLPMLLVWGRQDRMVPFKLAPLLAAKNPQIKLVELDHMGHCPHDEDPQRFNPILLDWLKDNFS
>NC_014501.1|WP_013323495.1|3860749_3860932_+|hypothetical-protein
MNNYDLKCYEKTYKDPKYWDRVELSSQGDRQKVWADCRGLTDSFYNELIARGYLLPFSKT
>NC_014501.1|WP_013323494.1|3859783_3860365_+|DUF479-domain-containing-protein
MNYLAHLFLADPTPESQIGNLLGDFVKGKIDNLSSIYSPEIIRGVKTHQKIDIFTDHHPIFKTSKQRLNQNHRKFAGVIIDIYYDHFLAKNWLIYSEQDLDEFVANTYQMLEQHQLLLPEKLQKALPCMIQEDWLGSYRYFEGIDQTFSRLSRRIKRTNNIAFALEDLIQNYSQLEEDFLQFFPQLIDYVNLA
>NC_014501.1|WP_041933285.1|3858976_3859198_-|hypothetical-protein
MAAIYNNTKGSPYYRERLDVVALNQDIVNLLLQGLNGIQKKVVQLAACCRWFDKRVIQYLIGQEKHLDFNCAF
>NC_014501.1|WP_013323493.1|3851344_3853378_-|M48-family-metalloprotease
MLLEDGIKALQQQQFSQAVELLEDYCKRIANKNTPNYIQAQIALARAYRGNNQREQAFTLGQALQKHHDPQVSEWAKGFISILIAEEKATNTGISSGLLSEPKKPLRTLEPVVRLPLPKAKFYLQLAFYLTGILMFVLVCVFCLIIITLTNFNIYNRVISTLGLSFIISLITFFSSPLIIDLIAKTNCKIQWINLSQVRKYSPETANVISYVVRKQKIQAPRLGIIDDANPIVFTYGVLPNQARIVITKGLLKYLKDEEIAAVYAHELGHILEWNFALMTLGTTVSQISYILYLFIEKLSHKNTKIKKFFGIIKITAIIPYLIYLINNYLFYYLSRNREDFADYFAAKVTGNPNGLSRALIKIPYGLLEEQKQGNSATLIALTRLLNIVDFKGSLICGNAYFLTSDFQQVGQTFLWDLFNPWRIWLKLNSSHPLTGKRIHTLMNYAQFLELENQFNTLAVIVQGNQLNHRKLYTNFILEILVFNAQWLGIIATIVVGFSLTSHLRTSMGIISLAMVGFGGGLLIKTLNMYPKTQNAPHTDIYSLICDPYASPLTKTPVELQGKLISQPQAIYELGANTIVQDSSGVIFCRYSSAFGSLGNFFLSWAKNKNFIGSNLTIVGWFRRGISPCIEWTQMNNATLAVSNYPRFWSVIRVSAVILVGLVLLIYAIGTHRLTSG
>NC_014501.1|WP_013323492.1|3851002_3851203_-|hypothetical-protein
MSLYTTQTNNEIFREDISEYVAQLQLHMALQARNLVPSLTHTHDSRQQLLQETQANIEKLVSRQIF
>NC_014501.1|WP_013323503.1|3867559_3868222_+|Fe2+-dependent-dioxygenase
MIFTIPDLLTASELEEIRSILEGAEFADGKLTAGWHAQLVKDNQQLKSGQIQTQLTQKVKEALNRNALFQTAVRPRMIHSLLFSRYDVGMSYGTHTDNALMGSGFWRSDVSFTIFFNPPSDYEGGELVIESADDEKAYKLQSGAALIYPSSTLHRVDPVTKGTRLVGVGWVQSLIRSESEREILFDLETARRSMFSQQGKTVEFDLVSKTIANLLRKWAE
>NC_014501.1|WP_013323504.1|3868501_3870916_+|response-regulator
MKLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGIQFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGGLSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLWSFDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRLNGTILNAAQAALEENDKESAELVRHPNLINNSGTSNLVDQTIKLLWNQHREGYFNRVKFIEQVVNSNHLTDGNGVNRQQAITEAHTLVGALGSFGFEQASGIAREIERVLKMERGSNQIDRENLLKLVKTLRQKLETDQNNEETNLDVKALSFCHPYQRKDYQLLIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENGLELLQELSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPERIVEAIVKVVQPGCLPTAKLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISGIDLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRILNRLERERQRRQLADVDSLTGVASRRKSIQEITRMLHLAQRQKQPCCFIILNIENLSQINELYGHAVGDQVLRGLAKILQQTFRYEDIIARWGNEEFVLGLYNIDLQGGITRTREFLALCSNSLFTDALDHCFQVKLTVGVAEYPLNGQTLQNLYQAAQQALYQGKVKGGYGVFGTEEFSLIL
>NC_014501.1|WP_013323505.1|3870962_3872003_-|acyltransferase
MSNKSHLKNLDALRGAAAFYVALAHFIDGLKFFPHSLQTLCFSFGQEAVMLFFLLSGFVIYWSVEQSPNLSFKSYLIKRFRRIYIPFFIALLVSITIFYLNGSLADKFSWKNFLGNVFMLQDFASVKPGTLVKPFLGNDPLWSLSYEWWFYLLFFPAYKLLPKTSNRIYFILILSIISLGVYQFIPNQPALWLSYFIIWWAGLELAEIYKSQGKFTWQNCTSIFLSLLVMLSLSLMPVLYTKEIRFGYYPFLIFRHFFAAFLLLSFGLIVFQKKFWFMEKFLAVFALIAPISYGLYIFHYPILKHSHLEQYFSHVWLGYILEVGLIIGLAYVVELKIQPWIYKWLK
>NC_014501.1|WP_013323506.1|3872027_3873107_-|hypothetical-protein
MNEKPEETSTNLKEEEAAELLRSLLHKQGNWVDWGKACYALQKAGYSSQTIFEQTGFQGSQQNLIIVASQVYESLLNEEVSAETLTYYQGPRSDILYEFRILNQQQRASVAELAREKKLDLDESRELAKAVQTYDRFPQLPAGFEKHPGDAMAYQCWKAARQKKDLQARSRLIAKGLKFAYSSGAREALEKLLLDFTVVSTRTAPLMPVYRLEQETELARIIPLVGVLPLTVEALAALTPIVAEGPFQIVRLDHQATMVPIPGWQVILKAQEPVAILCSSEQLPKPLPGKAEEVLVVVERNLIEWDVNNYYLIEQEGNLVFQWFEEDPNIPLLGQVILVMKPKKIFDENNLLEPWQMDD
>NC_014501.1|WP_013323507.1|3874303_3875890_+|FkbM-family-methyltransferase
METSQENSPINVYCEYLQQNYPALNLNSYPQLLTDVEKTNWDEPQSATDLNNIAVITLIEAEQAQDLSIRSLYLETAIEVLRQGVQEESHPLCAAHIALINVMIGEIEQARRIAFSSFLEIMQPLYQGENLGRGLVYLPKKNPIFANLYTKEIDNLLQAHDGYAQALLLLTEVLVQAQLVFYNLSGLRFLQLGTQIAPNSVIRNLQLGLSCLANKQWEGLLYLQRSRELKPNYAQTIQSLYLAYKQLQKPAISQFWHQMAAEYYQQTNQSSDWAWSQLPLDSPFTYIPFDEEVLLAVESSLHSIVTLVLLAQRDWFETEIEFWHNQLQPGMTIIDVGANVGVYTFSAALKVGSTGKVIAVEPFVGCVKCLEETARINQLTQVKIYAAAASERQGTAFLALHAANELNEVVMKESVAPEGKNLLEIQCLTLDSLIEQENLSQVDWLKLDAEGHEMQVLAGCERLLREFSPNIIYENIAGSQSSNTPVAEYLLSRGYQLFRYRSYVQDLIAIESLEELQGNLNIIALPSA
>NC_014501.1|WP_013323508.1|3875901_3877032_-|ABC-transporter-permease
MNWWQRLKHNSLARFGAILLILFYVIVIAADFVAPYSPYDGQDDGSLLPPTPIYWRVQQGPDQGKWIGPHVYPTTQSPTDLKTGERTIKEDFSQPSPIRLFVKGTPYQLFQIRLPLPPSFQEVDIFPGLTVDRHLFGAVGPGKINLLGTDEQGRDEFSRLLFGGRISLFIGLVGIIISFPLGMIIGGISGYFGGWIDMILMRFVEVLMTIPGIYLLVALAAVLPPSLSSAQRFLLIVLITSFISWSGLARVIRGQVLSLKEQEFVQAARAMGAKPFYIIIRHVLPQTASYIIISATLAVPGFIIAESVLSLIGLGIQQPDPSWGNLLSLATNASILVLQPWLIWPPAVLIVLTVLAFNLLGDGLRDALDPRSLEQR
>NC_014501.1|WP_049802576.1|3877521_3878148_+|inclusion-body-family-protein
MWEKPNPLKQYIFRGIAKIGVFMTTELKQTPNKFNVIAVIDTKRIRATYPKPSQDKTKPTRINSNDLFLIVSGSTRVIETSEEIFKLELIAKPGDQLSFKSTSIYANSQDATIIYGIFQKNSTFKSFQPNFVTINRAFYNSENPDGLPPKYESITSVSYEAKVSRAGTENLSVYIALYKLAKDGNTQELFGYFSWDFTIEISRNTNQS
>NC_014501.1|WP_013323510.1|3878156_3879137_+|trypsin-like-peptidase-domain-containing-protein
MDSLIESLLQDILDGTSKINLADEVEKVLKDETVKKYLQDLINNPDINLNDLLPPSEKKTPEEELKINLEAIILTANRTPILIEDDTFKEAVDPLWKDPLENARKHIEFAIKASGRVQYSFSDRFITIGTAWLVTSDIVITNRHVADELANRDSSIDFRGEHFSFDTSLFKVERILHIEKTSGPDIAFLKLSTTENTDGLNRQPTSLLDRQPIPLSESTKFTPTQNVAIIGYPGRPDSKDEDASLIARILEYKYDVKRLQPGNIIGVTNNSIKHDCSTVTGNSGSVLLDLETGKALGIHYGGNARITNHAVPASVIKQRLQELELC
>NC_014501.1|WP_013323511.1|3879279_3880245_+|hypothetical-protein
MLDITVEDFRILIGERFSIEFQRTLKIPDDGKIYPLPPGLGVFPVYRVADYLNRVPDHWKKPNSFFIPMYQREALWLGFNGRYWKPNAVKIGVGQINAVSGEAWDEYLQDNPQDYLVCPNQPWLDGINVGEGFIRQFVAVPLGLGDTIEAQVTGVEEFGGIQILVYEPKLGKFPDQPPPISDNYDDIILESTSMTPAVDSEMGLGAGGKMKQKIYPDEYGIDTWDLENYGSISVYIVNSEKYQEITGLEPPPTPIDVQTYTQYGLPWFSLYDEEKGDLPASARLAEVKTIGKREAERGVKLDTDDLSVDVSEFNIKNIDLF
>NC_014501.1|WP_013323512.1|3880749_3881109_+|hypothetical-protein
MNKQSLILIFPIFGAIFGLWISPSTADEVRQIPVEEVKNPEVSTGTVQDLRELPSKDLSEWFSNQSSSNRGVDSNLYQIDNGSYKAAPSVDFLEEQNQWKNTNHGDVQPVSGSIDLTKF

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Crispr_ID: NC_014501_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_15

3993552-3993652

Orphan

Consensus_repeat	Method
TTTAGGTGCGTTACGCTCCGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_15

>merge|NC_014501|15|3993552-3993652|CRISPRCasFinder
TTTAGGTGCGTTACGCTCCGCTATACTGCCTCGCGGCAGAACAAAATTGAATTAGAAACACCCTGCCGCCAAGAACAATTTAGGTGCGTTACGCTCCGCTA

>NC_014501|15|12|3993552-3993652|CRISPRCasFinder
TTTAGGTGCGTTACGCTCCGCTA	TACTGCCTCGCGGCAGAACAAAATTGAATTAGAAACACCCTGCCGCCAAGAACAA
TTTAGGTGCGTTACGCTCCGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013323623.1\|4001072_4002014_-\|DUF3962-domain-containing-protein	unknown	unknown	gnl\|CDD\|372482
NC_014501.1\|WP_013323625.1\|4005344_4006394_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380126
NC_014501.1\|WP_041933292.1\|3991057_3991954_+\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NC_014501.1\|WP_013323605.1\|3980764_3982135_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NC_014501.1\|WP_013323615.1\|3992067_3992229_+\|rubredoxin	unknown	unknown	gnl\|CDD\|366011
NC_014501.1\|WP_013323616.1\|3992246_3993197_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176228
NC_014501.1\|WP_041933294.1\|4006750_4007197_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_014501.1\|WP_013323612.1\|3988315_3990250_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_014501.1\|WP_173362884.1\|4000680_4001028_-\|DUF3893-domain-containing-protein	unknown	unknown	gnl\|CDD\|372436
NC_014501.1\|WP_013323617.1\|3994197_3997974_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226702
NC_014501.1\|WP_013323609.1\|3984238_3984706_+\|phosphatase	unknown	unknown	gnl\|CDD\|350353
NC_014501.1\|WP_013323620.1\|3999909_4000275_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323624.1\|4002010_4005355_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375593
NC_014501.1\|WP_013323619.1\|3998983_3999889_+\|DUF1338-domain-containing-protein	unknown	unknown	gnl\|CDD\|319960
NC_014501.1\|WP_157871820.1\|3983661_3984057_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013323606.1\|3982726_3983374_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|215413
NC_014501.1\|WP_041933817.1\|4006485_4006689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224035
NC_014501.1\|WP_013323621.1\|4000279_4000684_+\|peptidase-A2	unknown	unknown	gnl\|CDD\|133136
NC_014501.1\|WP_013323613.1\|3990404_3991040_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188643
NC_014501.1\|WP_013323607.1\|3983524_3983662_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013323623.1\|4001072_4002014_-\|DUF3962-domain-containing-protein	gnl\|CDD\|372482	pfam13111, DUF3962, Protein of unknown function (DUF3962). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 233 and 796 amino acids in length. There is a conserved FSY sequence motif.	6.71981e-16
NC_014501.1\|WP_013323625.1\|4005344_4006394_-\|hypothetical-protein	gnl\|CDD\|380126	pfam18154, pPIWI_RE_REase, REase associating with pPIWI_RE. Restriction endonuclease (REase) domain family, found in a conserved three-gene island that also contains a DinG-type helicase and the pPIWI_RE module. This three gene island is predicted to form a conflict system which targets R-loop formation of invasive plasmids during plasmid replication.	8.65764e-27
NC_014501.1\|WP_041933292.1\|3991057_3991954_+\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	1.96686e-30
NC_014501.1\|WP_013323605.1\|3980764_3982135_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	0.0036551
NC_014501.1\|WP_013323615.1\|3992067_3992229_+\|rubredoxin	gnl\|CDD\|366011	pfam00301, Rubredoxin, Rubredoxin.	3.28441e-22
NC_014501.1\|WP_013323616.1\|3992246_3993197_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176228	cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	9.07525e-141
NC_014501.1\|WP_041933294.1\|4006750_4007197_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.49537e-19
NC_014501.1\|WP_013323612.1\|3988315_3990250_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_014501.1\|WP_013323619.1\|3998983_3999889_+\|DUF1338-domain-containing-protein	gnl\|CDD\|319960	cd16350, VOC_like, uncharacterized subfamily of the vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.85162e-97
NC_014501.1\|WP_013323609.1\|3984238_3984706_+\|phosphatase	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	9.05307e-58
NC_014501.1\|WP_013323624.1\|4002010_4005355_-\|hypothetical-protein	gnl\|CDD\|375593	pfam18155, pPIWI_RE_Z, pPIWI RE three-gene island domain Z. Poorly-understood domain observed N-terminal to DinG-type helicase, which is part of a conserved three-gene island also containing a REase domain and the pPIWI_RE module. This three gene island is predicted to form a conflict system which targets R-loop formation of invasive plasmids during plasmid replication.	8.55456e-44
NC_014501.1\|WP_013323617.1\|3994197_3997974_+\|PAS-domain-S-box-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.24657e-45
NC_014501.1\|WP_013323606.1\|3982726_3983374_-\|HAD-IA-family-hydrolase	gnl\|CDD\|215413	PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein.	9.87168e-55
NC_014501.1\|WP_041933817.1\|4006485_4006689_-\|hypothetical-protein	gnl\|CDD\|224035	COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair].	0.000545803
NC_014501.1\|WP_013323621.1\|4000279_4000684_+\|peptidase-A2	gnl\|CDD\|133136	cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	0.00168649
NC_014501.1\|WP_013323613.1\|3990404_3991040_+\|hypothetical-protein	gnl\|CDD\|188643	cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea. Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.	1.1632e-68
NC_014501.1\|WP_173362884.1\|4000680_4001028_-\|DUF3893-domain-containing-protein	gnl\|CDD\|372436	pfam13032, DUF3893, Domain of unknown function (DUF3893). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is typically between 123 and 144 amino acids in length. There is a single completely conserved residue E that may be functionally important.	1.50438e-08

>NC_014501.1|WP_013323616.1|3992246_3993197_-|NAD(P)-dependent-alcohol-dehydrogenase
MKAVIINRYGSADVLQYQEVEKPSPSPDEVLVRVIASSVNPVDWKLRKGDLQPLSNLVGLQRLGCDFAGVVEVVGERVTQFRVGDEVYGMVNPLFGGAYAEYVAVNASAVALKPKQATFEQAAAVPVAGLTAFQSLVDLGELRPGYQVLINGASGGVGVFAVQIAKNLYAEVTGVCSGKNRELVLALGADEVIDYTQENFLEQGKKYDLILDAVGKSSFSQCQKILKPEGVYISTLPSWDILLGMGQSLLGFGQKAKIVLALPRSRDFQALSQLIDQGKIQIIIDSVYPLSEIAQAHRYSETGRAVGKIVLKVASS
>NC_014501.1|WP_013323615.1|3992067_3992229_+|rubredoxin
MKTYICTVCGYTYDPTQGDPDNNIAPGTAFEDIPDDWSCPVCGADKSEFQQQE
>NC_014501.1|WP_041933292.1|3991057_3991954_+|phosphodiester-glycosidase-family-protein
MNRLVKLIIISLIMGVVSACTPTQSSSEKPQRSESAVVQPEPLYKVYDLPQSTVHTLTIPVDSPYQVTVTLARSLETVENLAKKQGAMAAINGGFFDPNNGKTTSYIIHQGKIIADPKNNERLMKNPDLTRYLDKILNRSEWRRYQCGATVRYSISFHNQPTLTGCQLLDSLGAGPRLLPEMTAQTEGFIDLVNGTMIKDALGLKEPNARTAIGITANGDLIWIMAAQKAHSSRATGLSLLELAEFLKTLGVQEALNLDGGSSSTFYYQGKTYKGKLDREENFLERPVKSVLILQKKL
>NC_014501.1|WP_013323613.1|3990404_3991040_+|hypothetical-protein
MIYLDSAIIKEAQIAEKLGWVKGITTNPTLLAKSDLSPQETLKQLAVISPGELYYQLTATDFDSMVAEAWQAFQIIGSKTVLKVPATPTGFQVVACLSSDIPCSVTAIYSAAQAAIAAEAGAKYAIAYVNRATRLLGDGLKLVREMSAVLEGSGVEILAASLKSPEEAANAIMAGSHHLTLPLNILEAMTYHELSNQTVEEFNQNGRGILS
>NC_014501.1|WP_013323612.1|3988315_3990250_-|ABC-transporter-ATP-binding-protein
MNEPVLDVHNLQVKFTNDNRATIAVDDISFVVEPGQVLGIVGESGSGKSITSLAVIGLVPSPGKITQGEIWFRTDPSTQGVNLLTIGENAKRDYRGEAIAMIFQEPMSSLNPVYTIGFQITEAIRLHQRVTAEQADQQAIALLQKVRLLPSDEQLEQKYLEKIKSEYDPQQGSSGLTDNIKAYIAQEKQAMLKRYPHQLSGGQLQRVMIAMAISCNPTLLIADEPTTALDVTVQKEILDLLRVLCKEDTQEKKMSMMFISHDLGVIANIADTVAVMYRGKIVEYGKVEQILKYPQHPYTQGLLACRPDINRTVKKLATVSDFMEEVKDPVTGQIQIQQKEQVNLSYIPSPEEQNKILKEQKKRLLKLETNEDILFIENLKVYFPIKGMFGQAKDVFKAVDDVSFIVKRGETLGLVGESGCGKSTLARAILRLIPTTGGTIRFRANDSGWEDISKMSIADQRLRRLRQNLQIVFQNPYNSLNPRLTIGQAIREPMVIHKPKEWSTEKQKRERVREVLKQVKLDPDWENRYPHELSGGQRQRVCIARAIVLKPKFIICDESVSALDVSVQAEVLNLFKDLQKQMDLTYIFISHDLSVVKFMSDHIMVMNKGKIEEKGTTEEIINNPQTEYTKRLISSIPKFPEEFN
>NC_014501.1|WP_013323609.1|3984238_3984706_+|phosphatase
MLEDIKNYYQVNPNIATSGQPTSEQFQVIKNAGYETVINLALPTSDQALANEAAIVTGLGMPYFNIPVVWEAPKLDDVRWFFSVMEALKERKVWVHCAVNKRVSCFVYLYQKYGLNLSEKDARYPMYNIWQPNEIWQHFIFEVGDFYERQKLAND
>NC_014501.1|WP_157871820.1|3983661_3984057_-|hypothetical-protein
MKLSKIDLSNIVAINHSQDKLGLLIDRGSEVEYLEIPAPRAAYQGLNQVANLANKISPLATPTLSDALNIPNQPKSVSYGASIEVDQLKKVVRVELSCELVYSLEESGDFEEEYDDFEDFDEDFHCEEQDY
>NC_014501.1|WP_013323607.1|3983524_3983662_-|hypothetical-protein
MIIFWGRDCLRCGTRSALPHFLELVNPLESREVGSCAKGELTTND
>NC_014501.1|WP_013323606.1|3982726_3983374_-|HAD-IA-family-hydrolase
MLSAILFDLDGTLANTDPLHFLTWKEILAHFDLFIDQEFYNRRISGRLNEVIIKDILPQLSDTEGIKLAEEKEAQFRQLAQGLQPMNGLIHLLEWAQSRQIKQAVVTNAPRKNAEFMLEVLGLQQRLPTVILAEEAPKGKPDPAPYLLALNRLGVSAAEAVAFEDSPSGIRAATAAGIFTIGVNSTHDSNHLLESGAKWIIEDFNASQLWQWLNQ
>NC_014501.1|WP_013323605.1|3980764_3982135_-|PEP-CTERM-sorting-domain-containing-protein
MTNNLVNSESQNQLSSQAHQLKSRWQSVLSMAKTVGGTRLGKQLAKRWKGRVALSLAGIVTVAAPAQALNFNITYAPGTTQQQIEGVELAAGLWSSYLKDDITVNFHFQMTDGSLGTALAGATPGIQRNINYFNFQTSALAEAKAANQSLFLPQSQSFSQLLQDGTVNNSSKIMLTSANAKALGLNTSTNSKLDGYLQVSSSANWNYSYDSQTINKNKYDFVSVVLHEMGHNLGFISGLDATDNSAKNQNQATALDLFRYSTESAAKGAIDSTIGNNPYFSLNGGQTAFSIDLNKNQIIESGEQAYFAQGEDRSLGGDGFQTGHWKPSANNIIGIMDPLISKGKVRSVSQLDMSLFDAIGWDINSAAQTNITLLKSQAKAKAKNAVIVERSSEVEEMMQESGVYNIASSRGSGWWQKANTAEASPNNSVSVPEPNSTMGLFALAGMVGMGAMFKRR
>NC_014501.1|WP_013323617.1|3994197_3997974_+|PAS-domain-S-box-protein
MLIDYRPQIQRHTIAVLSVTIALLLMLLINPWISMQSSPFLMFFLAVTVSAWYGGIKPGLVATILSALASYYWFVLPLHSFDLILTEAFRTLIFFIECCLICILCEALHQAKKRVEQNLQFLQEKEALLEMTNTQVSQILESITEGFFTVDHQWGFTYINHHCEMIFERAKQELLGQNIWQVLPEVEATVYEQFHQALAQQRSIRLEKSIFSQSEQYYEIRAYPIPKGLAVYVLDVTEQRLANRQLKESELRFRQLAENIDQVFWISSAQKANLLYISPAYQTIWGKSCDSLYEFPRSWLDSVHPEDQQRVAKATEKLRSTQEDFKEDYRIIRPDGEIRWIAARTFFIRDENGNKYRVAGLAEDITERKRAEEANKESERRFRRLVESNLFGVAFANTQGKVHYANDYYLRMLGYTQQELQAGLISWERMTPAEWLPLDFKALEELKIKGVATAFEKEYFHKKGQRVPILIGAAFLDEPYSKATEMIGFFLDLTRVKEAEKALQRREEELHLIADAAPALIAYVDANECYRFNNGRYEQWFGIPIEQIKGKTIKETIGDKLYQDIRPRIEQVLKGEEVSYEQEIFLPIGECRYIRANYVPRFDGEGKVEGFVALINDITDRKRIEDNLRESEERFRMMANSSPVMIWVSDETGGRTFVNQTWLNLSGRSFQEELGDGWTKSLHPEDVSRCLDTYLYALDAHQPFEIEYRIKAANGEYRWILERGCPRFTKFAKFSGYIGSCTDVTERQRALQALQESEQALQQHAQMLDLANDSIIICDLDESIAYWNQGAERLYGWTKAEVQGQRINSLLKTVFPQSISEIHDILKTLGYWQGELTQTREDGSQIVVSSRWTLQYNSDGQPIAILAISDDITERKQVEAALLRSEERFRGIFEQAAVGMSLLNLEGRWLRVNHKLSLIVGYSPEELLEMTFQEITYPEDLETNLNYVRQLLAGEIETYSMEKRYIRRDQSLIWVEITVSLVREAGHSSQQIGQPQYFITVVEEIGERKQAERALQERAVELTSLNTVLASTTAMLQKRNQELDQFAYIVSHDLKAPLRAIANLSEWIEEDLQAELPPENQQQLQLLRQRVYRMENLINGVLEYSRVGRKETTIETFSVLELLTDVIDSLSPPPTFTIEIVSPMPTLTGIKLFLGQIFSNLIGNAINHHPRADGHVWISAKELENFYEFAVSDDGKGIAPEHHQRIFGIFQTLEKSEKPESTGIGLAIVKKIVELQGGNITVESEVNQGTTFHFSWPK
>NC_014501.1|WP_013323619.1|3998983_3999889_+|DUF1338-domain-containing-protein
MNYSELTFQLWHRLWVDYRERVTYARIYEQMILDAGGKVANDHIAFRSLRLTVNCDHKSVNLGIPYLANLVEKLGYVVRGEYHFPSSHLYARHYQHPEQDLYDLPKLFISELMVDELPEFIIQQIQKTVDSGTFFDLEQVSFDGEKEQLLTQLQGVFTRPWAVPSKSVVEAVNEVSQYGAWVLIHGYGVNHFTGYINRQNTAKYPDIESTAKGLADLGVPMKSTIEGSRGSGLRQTATHAVTEMVTLKDDTTGELTQIPWTYAYYEIAQRNIIESEAGKTILFEGFLDAQAKNLFEMTRKS
>NC_014501.1|WP_013323620.1|3999909_4000275_+|hypothetical-protein
MFAHNTDLYNSHEVDEKIRKIAEAAIEKDKLTEEQEEKLKKLYFQYVGEEEYYYGKRQEESFNKNLPILIKQYSGKYVLFEDGKVIDYDLDEDTLLDRVEETDFYQSRNAIYVRQVPQYTL
>NC_014501.1|WP_013323621.1|4000279_4000684_+|peptidase-A2
MEIYPYQYNQLTQQYLPIIEIKIRNLKNPDFEIKDLGILDTGSDITLIPFSVLSRLNTLTAKRKPIEFYGVGNKKTIGIAYRLAVSLDTGNFFKTIVYGCAEDDTQGIMIIGRNILNRFSITFDGINKQIIIND
>NC_014501.1|WP_173362884.1|4000680_4001028_-|DUF3893-domain-containing-protein
MSRFDTWESKGYEQETNEEGKKVNRRDPETGMCIPKYIPRNPSQTTYWKAPQARAYNILATPSPEKFYLHHAITHELRDSHWWTSEECEYPLPLSLAKKTKEWSYNQSEEESENS
>NC_014501.1|WP_013323623.1|4001072_4002014_-|DUF3962-domain-containing-protein
MKQKKNVNLNYLQPIYLDYTESLTENISGYIMPFPNIERFNQHYGKPHENARTSVLEDIMRLLLPQIRVINKPTVNRQPNPAAFLAYTPVDPQILALLFKIWVEVCYPASQHTALMPFCQADQFHWLPATAEDLKFWAPSWVIAVELTKHEYQIGDYHFKLLFGPGRQKNTVELVSWPPRQNIHGHRTSIAIIISTQSDLAHLKVNLHFQMKRWIVKQGNTPEVRLEDKTTRCYVRRLRSWLGDYTLLEPNAFTVIEAHYRKEKKGYVTEWKSPIFREMLQRLEVANVLPLLHKEYLFPKILIWIPLNSLKLC
>NC_014501.1|WP_013323624.1|4002010_4005355_-|hypothetical-protein
MRDSSSWINKLRKKLADSVPMEFSSFARIELMLYALQAYFPEQPIRQAHLLMQGYREPNITDFQWGILQHLHHLTPEFRSSISWEIALRAYDDIANDGASSCLGFEINYATNQITLTHTMVRERYEIYESLLIKEPLKFVKQKYKPAPVGEYEFNINPEQVRLIRIEPEIANIGIQYASRIPSINLSKNRQAIRVSLADLIQKGRELEPVLGYDAGAVLEQSNYWNIQEDQQATEIIIDGESEILGPTGSGKSTKVECLVTLLTSQEKRVAIATNSVGEVQDWLEFAQKVGIKAVPIIGDSERHQHLSRLNQAVMFSNRQQPFTHPGFRWLSQSCPLYALSEPNIPQSGDGQHHKPPCFGKLRNINDTDKAYDCPLAPICPRHIQADELEKAQLIVGTLPGFIHKKIARHNLEENITVFEYLALTTDLFIIDEVDLAQPKLDEIFYPIVTLESFNLTQDTWTRTESYQHVHGILKGSVVVPGKYSDPYLEQSEDQRHLANRAIEILMYLLRNIGATLKGKKSSKQQIIEKILKDYSREGRLFSAWTLFDNLAEQLSGEAHLKNEKKNTITEESREQIKRSYERYREIFKRIQNNPVRPNYTGLNDTDTRIVERLALLSGAVLAGDLLTTVPHPDCKRFITETQWDIQFEQLESDVERFSKNLAILLQLAICTAQALGALGKHVSARGRTSVDLDSSLPLIPPVDFDRLLPKCPVGSVTSTQFLDGQLKIFRGIAIGRSLLSQWRSIFSVDGLTPSNLLVTSATSYSGDTEQSYTFHVQLMPTLLIEPPPEKAQAVAHDSEFFYCPVIDDTNEPIFISGSQGDQRKENIYRMVSGLCRSSRHGRALLDQFQDYLAENVGIERKNLLLVTNSYVEAEVLYNSLQFPYKDKASFVVRDGQWKSDILDSKVARSKITEFPTKNKELLIAPMGAISRAVNLMNPTTGEPYFGGIVIVVRQHPSPDDNQLVTSGVNKETIDLIGQHSVETIQEHARHVRDVFLAVPQIFSKLPEQKIAGVAFKKPLVWTLAVNLTQLIGRSTRGGRKTVIWFVDAAFMPETAKGNPSADSEQNSLLIAVRKLLREAINKGGVSGRIIQTLYGPVYYPLTRLTHFIDGRNL
>NC_014501.1|WP_013323625.1|4005344_4006394_-|hypothetical-protein
MQFSKEQILFIKLCKGLVQICDRINRGEPAYLVDASQPFPKPLYEAFQELSLKWILRDGKMRHPSILCMIEAARDKVEAVEPEFIECVDFPDEPLIENMTRPSEECEAWASKYAINLERDQNQSYIPRLIQEIERLSLPYSTYPLFRKFIAENQFPSDFDLTRFGSDNPNIRPVQELVRQAYREAPPQSVSMPLCKTCGGYLDCAARDIEDCCEPLDRRVDRVPTEDTVICLIRPSFLELRLARILEEMGLQVELWPDLDKADLRVKFPTGEVWALDAKDWGSATLLAIELNQDTIPDLGQSQSFFVVPDYRWQKLAYQAAFESRYKNDISVLSESELIKRARGYLNER
>NC_014501.1|WP_041933817.1|4006485_4006689_-|hypothetical-protein
MSENPPVLNAAELKEWQTKIETANRYNIFCHCRGCHAQWVDSSFDVICSSCGSKDVEQISCWQFPDD
>NC_014501.1|WP_041933294.1|4006750_4007197_-|MarR-family-transcriptional-regulator
MNLKSNSEKCASDLMEVMPLVMNFIRTQMRSHSASLLTVPQFRVLAFLKRHPDCSLSAVAEHLGVSRPTASAMVERLVQQGFVNRSEHPQERRQVELKLTEAGYRYFEQIREKTRKEIADQLGNLSETQLSSLREGIALLYQVFNQWH

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Crispr_ID: NC_014501_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_16

4529883-4530104

Orphan

Consensus_repeat	Method
AGATGANTCTCTAGATGA	CRT

5 spacers

The CRISPR arrays of NC_014501_16

>merge|NC_014501|16|4529883-4530104|CRT
AGATGAGTCTCTAGATAAGCCGCTAGATGAGTCTCTAGATAAGCCGCTAGATGATTCTCTAGATGAGTCTCTAGATGAGTCTCTAGATGATTCTCTAGATGATTCTCTAGATGATTCTCTAGATGAGTCTCTAGATGATTCTCTAGATGATTCTCTAGATGATTCTCTAGATGATTCTCTAGATGATTCTCTAGATAGTTCTCTAGATAAGCCGCTAGATGA

>NC_014501|16|4|4529883-4530104|CRT
AGATGAGTCTCTAGATAA	GCCGCTAGATGAGTCTCTAGATAAGCCGCT
AGATGATTCTCTAGATGA	GTCTCTAGATGAGTCTCT
AGATGATTCTCTAGATGA	TTCTCTAGATGATTCTCTAGATGAGTCTCT
AGATGATTCTCTAGATGA	TTCTCTAGATGATTCTCT
AGATGATTCTCTAGATGA	TTCTCTAGATAGTTCTCT
AGATAAGCCGCTAGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013324095.1\|4524107_4524596_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324103.1\|4528366_4528666_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324106.1\|4531651_4531870_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324094.1\|4523463_4524111_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324109.1\|4533620_4534031_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_014501.1\|WP_013324110.1\|4534462_4535698_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NC_014501.1\|WP_013324107.1\|4531893_4532145_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324112.1\|4536426_4537350_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014501.1\|WP_013324096.1\|4524696_4524849_-\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324100.1\|4527176_4527461_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_014501.1\|WP_013324104.1\|4528964_4529306_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324099.1\|4525904_4526477_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_014501.1\|WP_013324101.1\|4527474_4527705_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_083786937.1\|4538172_4538787_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NC_014501.1\|WP_049802601.1\|4538770_4539853_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NC_014501.1\|WP_157871933.1\|4527757_4528033_+\|XRE-family-transcriptional-regulator	unknown	unknown	unknown
NC_014501.1\|WP_013324098.1\|4525190_4525889_+\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NC_014501.1\|WP_013324111.1\|4535953_4536292_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|184253
NC_014501.1\|WP_013324108.1\|4532197_4533475_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271175
NC_014501.1\|WP_013324113.1\|4537419_4537785_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013324099.1\|4525904_4526477_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.01126e-16
NC_014501.1\|WP_049802601.1\|4538770_4539853_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	1.24429e-08
NC_014501.1\|WP_013324098.1\|4525190_4525889_+\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	1.65108e-07
NC_014501.1\|WP_083786937.1\|4538172_4538787_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	1.26477e-12
NC_014501.1\|WP_013324109.1\|4533620_4534031_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	9.93464e-42
NC_014501.1\|WP_013324111.1\|4535953_4536292_+\|c-type-cytochrome	gnl\|CDD\|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	4.84362e-54
NC_014501.1\|WP_013324112.1\|4536426_4537350_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.3189e-16
NC_014501.1\|WP_013324110.1\|4534462_4535698_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	2.34618e-155
NC_014501.1\|WP_013324100.1\|4527176_4527461_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000222198
NC_014501.1\|WP_013324108.1\|4532197_4533475_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.10693e-12

>NC_014501.1|WP_013324104.1|4528964_4529306_+|hypothetical-protein
MVVVKKKADIERMAFILDQILGGLKGSPFSWGQGQQWAWVPVARELGLDLLTINQISKRGYRLKRGVQPVGKIYLGSPIGLWCNVYLLQIQCVKLEDNKQLSLNLTTQESTGE
>NC_014501.1|WP_013324103.1|4528366_4528666_+|hypothetical-protein
MPKHKNVVQFSLNEEQLSILANLANPNESIGLCAKRLLLKVIEQSKPIDTVQSEMLEKRLESLREELQTYIDQKLERLDQLEVSVNELHGYIDSCELPM
>NC_014501.1|WP_157871933.1|4527757_4528033_+|XRE-family-transcriptional-regulator
MLDQLLILWELDYKGFCEILKIDYKNLWRYRQGLREFRLNMEQIAELDKLLKKVDKRYSDLPLDWYLDPNQKEQHDENTTDQTNSYSDQAR
>NC_014501.1|WP_013324101.1|4527474_4527705_+|hypothetical-protein
MLDELLEKWGFETYNDFADFLGVHRQTFWRYRVGEREFRLNWQQVLKLNKLLKQIGKDIEDLPLDWYLDPNQREHL
>NC_014501.1|WP_013324100.1|4527176_4527461_+|helix-turn-helix-transcriptional-regulator
MLDQLLQKLELSYNDFAAYLGIHRTHLWQYRKGKREFRLNWEQVLKLDKLLEKVEMKISDLPPDWYLDPNQREHDENTTDYTNASYSGQARSKR
>NC_014501.1|WP_013324099.1|4525904_4526477_-|TetR/AcrR-family-transcriptional-regulator
MSENSTREKILSICKGLLQSKGYSSFSLEQVAELAETSRTNVYHHFQSKEDLVKETVIKYKNDFSDILDEIEAQNLSLRESLQSLIDTYAKVLEPDNRKICLCICLLPEFNNLSESIQQELRNFFDLQVNWVLKISQNVSPEITLSNDEAAMIIGSFEGIVTVARIKGGSEYFKSVTSSLVENLLLAHQN
>NC_014501.1|WP_013324098.1|4525190_4525889_+|iron-containing-redox-enzyme-family-protein
MTISTFWMYFDETKLKEEIEIFSSFSTIPNWSLEKLRRVSVYYRDLVKNHSNHLALMISRLPETQFKSLIAEILNDEQGNGYYHKSHLFLWDNFLKSIGVNDIKRNIDIPDKMKPFIENSSIDFVVGLEGLGVECICSVYLSIFEKFLKKHPYILQHYDKVDWLFFDIHVRGEDIHHKEKIRKAVDDLIESRQINPDLVLKGYNKAKEAWRQTWCDWINLPEEKAVEALSRA
>NC_014501.1|WP_013324096.1|4524696_4524849_-|hypothetical-protein
MNNLTSFKGKVFKKSLTAVGSTEPPEVDPPGISDCARVLAVVDQPFSLKR
>NC_014501.1|WP_013324095.1|4524107_4524596_-|hypothetical-protein
MNYNIPQNEISRRDYFAAAALRGLLAGTKDYVNFSRQVQTCINKKLYLSAIELADEFMRELNNTRPVKTPLVHPQQTIGKVFKQFREAQGLTIAQASELSGLFPVMIIGLEALEHDPEEISSSVLDLKQTIQAVGKLCHFYDIPIPDKYLELTEEIEEIEKK
>NC_014501.1|WP_013324094.1|4523463_4524111_-|hypothetical-protein
MNIKEITLELIANLLHLRTTDINESDNVQITISSAQLANRMAASLFKAGEGVYLYSGDEIIFLDRLNKWDLLLHDHELLRKKMSVEKYDSNRTPIDYLRWTINKINSRYTKEGKQLFDLCDKVISYFRAIVIVLESVKDETHRVRNLLNEKSIIPAAERAIETLRTVQQEGLKDFDSFGAYDEWSDLWKSPYPIQRYQQRIRELEEQIKQLTEQE
>NC_014501.1|WP_013324106.1|4531651_4531870_+|hypothetical-protein
MNRTEHLNWAKERALEYLELNQLENAWLSFYSDLNKHEELRKHNGLQLGRQLKYAGFLNCVEEMKDFIKGFN
>NC_014501.1|WP_013324107.1|4531893_4532145_+|hypothetical-protein
MTDKKLEDTLAKIYTLDPVDGFKVGDLVYWGRRIGKVLKVGTKKIRIEFNTDLRREWVPIDDTLKLVDISPRFFGMNNLPDSD
>NC_014501.1|WP_013324108.1|4532197_4533475_-|tyrosine-type-recombinase/integrase
MPRKNERKAQDIRIQKDKGSLRLQFSSRLSKQFYGKRQFYKSVGRSDSPENRQWLLGVCQRIQADLDHPEAQKLFDPSLEKYLGLKVNHEFAVATTAITNPTLGELWDEFCQWRVATKQICETTYKTCYRRTYLHWLSPWLEVKVSLDMVNNLIADLMAADNYKPNLKKLFNALVKMGDRAVRLGKLDKNYFNETKEVIVKPPKKSLQLIDTEDYRSYTKEERDIIINAFRHSQKARERDIADLVEFLFLTGCRLGEVFALKWNDIKKDWIIFDESFSTETKITKTTKTDTVRIFKIKGYDKLLDLIKRVRLERKTTPEGYVFVTQKGKNYNRLILNELWNGKNKERIKEDNQKAEKYLGVVNRLVREKKISQYLKPSATRHTFITLQAQSGVDLKLLADSCGNSVDVIYNHYLGVNKDACLSNI
>NC_014501.1|WP_013324109.1|4533620_4534031_-|DUF29-domain-containing-protein
MQTYDGDFYQWTVEQAQALRQRDLDSLDWDNLIEEIESLGKSDYARVSSKVMRIIQHKLKIDYVAIPECIKHWQHEIKVWQKDIKRQISPSMIRKLLVDLDELFLDAKDLVLDEYDVELPQECPYSLDELVSSEKR
>NC_014501.1|WP_013324110.1|4534462_4535698_-|molybdopterin-molybdotransferase-MoeA
MLPVNEAETLILDLIQPLQETEIIALEAAAGRILAQPVTSKLDFPYWDNSAMDGYAVKYKDVEGCQAEQPVILEIIEEIPAGKKPEKSLKSGQTARIFTGAMLPEGADTIIMQENTERLGNQVKILAAPSLYKAYVRQKGEYYQAGKPLLGPGIAINAPEIAVLATAQATQLTVYRRLKVAIFSSGDELVTPHQPLQPGQIVDSNQYALAAFVASQGATAIPLGIVPDDPENLRETISRAIKDADVVLSTGGVSVGEYDYIEEILATLGADIKIRAVGITPGKPLTVARFSNGCIYFGIPGNPVSALVSCWRFVQPAMKKLSGLKDSWKPVFIKARSRHDLRSKGRLETYVWGKLLLVDGVYEFELAAGTHSSGNLINLAQTNGLAVMPVGQSFVGAGEEVTVLQVGSPYQ
>NC_014501.1|WP_013324111.1|4535953_4536292_+|c-type-cytochrome
MKKLISWAIVAFLFMQICWAAPAFAGDAASGAKIFSARCASCHAGGKNIVNAQKTLSKVDLEKYDMFDLEKIKTQVTNGKGAMPSFKALLKPEQIEDVATYVLDSAEKGWKK
>NC_014501.1|WP_013324112.1|4536426_4537350_+|tetratricopeptide-repeat-protein
MKRGWKIILNFIVALVILFSLQEQAAFSIPNSLASQTSQLFYQGIENTKTQNYQQALANFTQVINLKSDLVSAAYSNRCLVHLQLGNNAAALSDCTAALQLNPNNLETYLNGGLAAYRLGNYQEAIEQYQAVIERNKDDYRAYYNQGLAYFALEDYPKALLNYEQALQSSDSSTIQALIYADKGLTHFFLGNTSQSLADFDAAIQLNNSNEKLYYNRACVYFHNQNYTEALNDFTKALQLNSQYAEAYLNRGLLRHGVGLEQAAIEDLNQALQQFQQQNNREGYQKTLALIENLHQIIAQSHRTVVS
>NC_014501.1|WP_013324113.1|4537419_4537785_-|hypothetical-protein
MNLQQMMSLNKQKSFDYLLVETQKEPVRDDFYNSSWDNPMSLNLNYWILLIIPTLLIMAFFIEAKKKFFSPQNQDLENFADCSCQRCKYFSPNPYLKCAVNPKLALTKESCDCPSFNPDKN
>NC_014501.1|WP_083786937.1|4538172_4538787_-|pentapeptide-repeat-containing-protein
MGRGYKKSYIKANLRGAYLAGANLTHANLKLADLAEANLHQANLEGANLTQVNAIGTDFTRASMTGACLEAWNIESSSLLDEVDCRFVYLKEHPKPGTDDQERRPSSGGFQAGEFSKLFEEVIDTVDLIFRNGIDSKAFVNALRDVEVKNENTPLTVQSIENKGDGVLILKVTVPPNKDKEKIHQEFIEFYEHQLLEQKQKYEA
>NC_014501.1|WP_049802601.1|4538770_4539853_-|pentapeptide-repeat-containing-protein
MKVSEVLKRYAAGDRDFRRVNLRGQSFKGADLSGADFSHADIEGTNFQGAILRGTKFCGAKAGLQKHWTLILRLVSWIISGIAGFILAFTGVLVSSIFDNSSLQNQVIGWVFLGVLIVIFAVFIRQGIGRVGPVGGVGGVGRVGRVGGVGRVAEVFAGTLLYGFLFAVSVAVILGEDFTSYLPFFLVFFFVFFSAFPFSTAVTIAVTFAVPFAVPFSAAFSPAFAFTFAFAVDGAFAFAFAFAVFVLAFATGGAVAFAFAFAGLLVSTYLGWRAMKGDPRDVWVRTIAVAFAATGGTTFKDADLTDADFSGATLDSTDLRAKSLIRTCFKDTIKLIQARAGKTLLADSNVRELLVTGSGL

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Crispr_ID: NC_014501_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014501_17

4713519-4713650

Orphan

Consensus_repeat	Method
GGGGGGATCTCGATAATGTTAGATTGACCTCTCCCCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014501_17

>merge|NC_014501|17|4713519-4713650|CRISPRCasFinder
GGGGGGATCTCGATAATGTTAGATTGACCTCTCCCCCAAATCATCTCCTAAAAGGCGAGGGGAGCAATACTTCTGACTTATCAAGGGGGGCCGGGGGGGATCTCGATAATGTTAGATTGACCTCTCCCCCAA

>NC_014501|17|13|4713519-4713650|CRISPRCasFinder
GGGGGGATCTCGATAATGTTAGATTGACCTCTCCCCCAA	ATCATCTCCTAAAAGGCGAGGGGAGCAATACTTCTGACTTATCAAGGGGGGCCG
GGGGGGATCTCGATAATGTTAGATTGACCTCTCCCCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014501.1\|WP_013324266.1\|4720934_4722878_+\|cyclomaltodextrin-glucanotransferase	unknown	unknown	gnl\|CDD\|200459
NC_014501.1\|WP_013324263.1\|4718418_4718997_+\|DUF1802-family-protein	unknown	unknown	gnl\|CDD\|370138
NC_014501.1\|WP_013324269.1\|4727822_4728515_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|226076
NC_014501.1\|WP_041933335.1\|4710765_4711323_-\|DUF4126-domain-containing-protein	unknown	unknown	gnl\|CDD\|379253
NC_014501.1\|WP_013324257.1\|4708795_4710760_+\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|235651
NC_014501.1\|WP_041933897.1\|4705700_4706384_+\|DUF4335-domain-containing-protein	unknown	unknown	gnl\|CDD\|372973
NC_014501.1\|WP_013324261.1\|4716895_4717396_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_014501.1\|WP_041933901.1\|4717618_4718197_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NC_014501.1\|WP_013324268.1\|4724907_4727697_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
NC_014501.1\|WP_157871832.1\|4708602_4708743_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324259.1\|4711518_4712814_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NC_014501.1\|WP_013324265.1\|4719865_4720588_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238742
NC_014501.1\|WP_013324264.1\|4719091_4719586_+\|host-attachment-protein	unknown	unknown	gnl\|CDD\|370820
NC_014501.1\|WP_013324256.1\|4707075_4708548_+\|modification-methylase-NspV	unknown	unknown	gnl\|CDD\|100107
NC_014501.1\|WP_013324252.1\|4704315_4704834_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NC_014501.1\|WP_013324253.1\|4704987_4705596_+\|DUF3038-domain-containing-protein	unknown	unknown	gnl\|CDD\|371430
NC_014501.1\|WP_013324271.1\|4728722_4729691_-\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|234850
NC_014501.1\|WP_013324255.1\|4706534_4706969_+\|hypothetical-protein	unknown	unknown	unknown
NC_014501.1\|WP_013324251.1\|4703120_4704182_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_014501.1\|WP_013324267.1\|4722975_4724799_+\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114

Protein	Function_ID	Function_description	E-value
NC_014501.1\|WP_013324266.1\|4720934_4722878_+\|cyclomaltodextrin-glucanotransferase	gnl\|CDD\|200459	cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins. Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	5.07068e-158
NC_014501.1\|WP_013324263.1\|4718418_4718997_+\|DUF1802-family-protein	gnl\|CDD\|370138	pfam08819, DUF1802, Domain of unknown function (DUF1802). The function of this family is unknown. This region is found associated with a pfam04471 suggesting they could be part of a restriction modification system..	1.4685e-96
NC_014501.1\|WP_013324269.1\|4727822_4728515_-\|manganese-catalase-family-protein	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	2.6357e-86
NC_014501.1\|WP_013324256.1\|4707075_4708548_+\|modification-methylase-NspV	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	0.000769219
NC_014501.1\|WP_013324257.1\|4708795_4710760_+\|anthranilate-synthase-component-I	gnl\|CDD\|235651	PRK05940, PRK05940, anthranilate synthase component I.	0
NC_014501.1\|WP_041933897.1\|4705700_4706384_+\|DUF4335-domain-containing-protein	gnl\|CDD\|372973	pfam14233, DUF4335, Domain of unknown function (DUF4335). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 204 and 480 amino acids in length. There are two completely conserved residues (G and D) that may be functionally important.	1.11326e-82
NC_014501.1\|WP_013324261.1\|4716895_4717396_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	3.35671e-24
NC_014501.1\|WP_041933901.1\|4717618_4718197_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	5.70702e-08
NC_014501.1\|WP_013324268.1\|4724907_4727697_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
NC_014501.1\|WP_013324259.1\|4711518_4712814_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NC_014501.1\|WP_013324265.1\|4719865_4720588_-\|VWA-domain-containing-protein	gnl\|CDD\|238742	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.	2.64383e-60
NC_014501.1\|WP_013324264.1\|4719091_4719586_+\|host-attachment-protein	gnl\|CDD\|370820	pfam10116, Host_attach, Protein required for attachment to host cells. Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells.	1.23413e-35
NC_014501.1\|WP_041933335.1\|4710765_4711323_-\|DUF4126-domain-containing-protein	gnl\|CDD\|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	1.78613e-32
NC_014501.1\|WP_013324252.1\|4704315_4704834_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	7.61935e-98
NC_014501.1\|WP_013324253.1\|4704987_4705596_+\|DUF3038-domain-containing-protein	gnl\|CDD\|371430	pfam11237, DUF3038, Protein of unknown function (DUF3038). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	2.63711e-81
NC_014501.1\|WP_013324271.1\|4728722_4729691_-\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|234850	PRK00861, PRK00861, putative lipid kinase; Reviewed.	1.06221e-167
NC_014501.1\|WP_013324251.1\|4703120_4704182_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.36905e-114
NC_014501.1\|WP_013324267.1\|4722975_4724799_+\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0

>NC_014501.1|WP_013324259.1|4711518_4712814_+|Glu/Leu/Phe/Val-dehydrogenase
MDKPLLADASTRLESALKYVSISEDAIERLKYPKASLSVSIPVRMDDGSLRIFQGYRVRYDDTRGPGKGGVRYHPNVNIDEVQSLAFWMTFKCALLNLPFGGAKGGVTVNPKELSKHELERLSRGYIEAIADFIGPDVDILAPDVYTNAMIMGWMMDQYSIITRKISPAVVTGKPLTMGGSQGRDAATGRGAYYVIQAMLGRFDLEPAHTTIAVQGFGNAGGVVAELLSKAGYKVVAVSDSGGGIYSEKGLDIPSIRRYKQEQRGIKAIYCQDTVCNIEEHQLITNEELLSLDVDVLIPAALENQITQTNAADVKAKYIFEVANGPITSAADQILEQKGIYVFPDILVNAGGVTVSYFEWVQNRNGLYWTLKEVHERLKENMVTEAEKVWSVAQEFGVSLRTAAYVHALNRLGEALDAKGTRDYYINGTIG
>NC_014501.1|WP_041933335.1|4710765_4711323_-|DUF4126-domain-containing-protein
MIIGLLAALSASAAAGMRIALPLLIIGLLHSQMWNQLPLLSQINPRVLLTILISWSLFELFGSKYLLGQRVLQVVEVLFSPMVGALMSLSVAHILELEFRPLWVLGMVGGLFALLLQLVQAGWFFRLRGIPIWVVCLEDILCVFLVLFAFKAPENGGLIALLLLWIAIRSSKAWRDWSKQKPPHS
>NC_014501.1|WP_013324257.1|4708795_4710760_+|anthranilate-synthase-component-I
MYLAVIAFGSNDNAKSNLVKGLKTLAQKVRILALSPVYENPAIGHHTSPPYLNGACLIETNLPPLKLYEQVLRPTEDELGRIRAKSGKAKCSIDLDLVLYEQEILQLPKLQLPAPDILRYAYVAVPLSFLVPDWIHPLTQETMAQIGNRFSQEKASFYHHTEVNAAIASEIFTPTSSTRQPLYWQKLPLNKRSGSQVFETLFLHPQDKIHKIATLLESPGNSNSSQLARYSICAGSPRVINGQPQVWTPAVGDILPFLRRLLDSAHHNTSLPAIVPPELPFSGGWLGWLGYDLATEIEQLPEYKADPLPFPIAYWYEPDSFAVLDHQQQILWLAASDSPQLEVMEKRLEKAAQKIEDPRLNLCSTHPVTPIFQMNQQEYIAAVQKAKKYIQAGDIFQANLSLRFEAHTVFDSWSIYRALQKINPSPFASYWQTPWGAMISCSPERLIQRTGQQVQTRPIAGTRARGVTPTEDEQLAEELIANIKERAEHIMLVDLERNDLGRVCQWGTVKVDELLTIERYSHVMHLVSNVVGTLHPNSDTVDLIRGVFPGGTITGCPKVRCMEIIEELEPVKRNLFYGSCGYLDWRGNLDLNILIRTLLYSDLKDCSGAIVWGQVGAGIVADSDPEKEWYESLHKAQAQLNALNLAEIFYHSTF
>NC_014501.1|WP_157871832.1|4708602_4708743_+|hypothetical-protein
MATITPHPTPDTRHPNLTVNLIFVQVLIPPTAASRKQTKEYKLRYL
>NC_014501.1|WP_013324256.1|4707075_4708548_+|modification-methylase-NspV
MKNKSTLELGDFQTPQALALQVTKVVQQIGLIPQSIIEPTCGKGAFILAAIQIFNNLKKIIGVEINPNYLKQISLNENSKNIQLINDNFFNLNWNEIINGLPEPILIIGNPPWVTSAELGKLESFNLPKKSNFQAQKGLDALTGKSNFDISESMILQHLEWLKQRRGTIAMLCKTAVARKVLIYGWKHHYPIKQAWIYQINALKYFNAAVDAGLLVLNLEPEPAAKKCFWFENLSDSLPKNILEYEQNILVADSQNYHQYKHLYGVDKNYIWRSGIKHDCASIMELEKTAQGYQNRAGVHLSLEENYIYPLLKSSDLGNERISQCKKYVLVTQKYIGEDTKNLEKNAPKIWKYLQANREAFAKRKSSIYKNHPRFSIFGVGNYTFSPWKVAISGLYKQLNFMSIGPREGKPVIFDDTITFLNCYSEKESRFIAEILNSEAAQLFLKSMIFWRDKRPITINLLKRLNLQTLAKELGREKEYLLYLQKREKN
>NC_014501.1|WP_013324255.1|4706534_4706969_+|hypothetical-protein
MLKKLSRLVVIGVILFPVQVLSQQANITYSPQVPESVIAQYSDSCYMQTESGVIYNLGTLCGSRSTPTSTYKHPNPISDPTSGGRYADPISDPTSGGRYADPISDPTSGGRYEDPISDPTSGGRYADPISDPTSGGRYEDPFSY
>NC_014501.1|WP_041933897.1|4705700_4706384_+|DUF4335-domain-containing-protein
MDVKRQYSLPNCTLILVGSSDDSVTDFSGEGVPILSVLNSAECRFVGVNTILQGGRIFFENLVKAVSAYAQEYLSGVHHPEDISQQQDRIHLEKAQNNLHRLIWQPGSDSHGEPVAIQLTTIQLFDLVEAVDQFFADSRTLPDLDLKLQPVSRRYRQPDEPLSQRLVPLTLGVSGLAVAALICYLIPIPEVRKPEPDTQSLPTQTQPTLPSSPLPGATSNPPNSQPQ
>NC_014501.1|WP_013324253.1|4704987_4705596_+|DUF3038-domain-containing-protein
MSDSISIIDSKPTILDVLPNLPISGQRCAIRLQQQLDLMLLAIEALDLEATTHIIETVTELGLEEIINNRITLWRLRCSNPWRRSYTRSVLTVQQAKALAIIISHRAKYLSVSIRQLLLAEQQMRNKGLPVDNNFLISEYLERFRSHFRSRMNPRRAKVMVCLAIEDELNELALALLNQLLFCTGTTGMQRFWISLFDGEVA
>NC_014501.1|WP_013324252.1|4704315_4704834_-|adenine-phosphoribosyltransferase
MDIKSLIRNIPDFPKPGIVFRDITTLLSHPEGLRYTIDTLTQKSIEANFRPDYVVGMESRGFLFGVPLAYQLNAGFIPVRKPGKLPAAVHTIEYDLEYGSDKLEIHQDALSSHHRVLIVDDLMATGGTARATAQLLDKIGCEVLGFAFIIELKELGGRQRLPDLPIITLVEY
>NC_014501.1|WP_013324251.1|4703120_4704182_-|ABC-transporter-permease
MTLTSQSGTSQQSGFLLTRLQALLSSETFLYIIKRILQGLLTLLLASFLSFLIIQLAPGNFIQTLAQNPKISRQVIEEYTKLFGLDKPWYVQYWSWLVQVLTHFNFGTSFVYFRPVSSLLLERIPATLLLAILSIILTWAIAIPLGIVSAVKQNTFLDKFLRVISYLGQGFPSFITALILLIIAQQVSPLLPVGDMTSLNYSELSPIGKVLDLGWHLILPTIALTVTSFAGLQRLMRGQLLDVLRQDYIQTARAKGLPENKVIYVHALRNAVNPLITLLGFEFAGLLSGAFIAEFFFNWPGLGRLILQAVTAQDLYLVMGSLIMGAAMLIVGNLLADLLLKFVDPRIKLEDLK
>NC_014501.1|WP_013324261.1|4716895_4717396_+|HEAT-repeat-domain-containing-protein
MIAQTQYTQMAVDTLCEGLNDPIPQIRAKSAESLGKIGSDRAVGSLVSHLYDSDITVRLNIIQALGEIASHNAIPDLVNYLNDPDSTIRSATAETLGKIGSEQAISYLCQSLNDTDSSVRATAVKALGQIGSQEAIPALIQAFHDTDDTVRLNAADAIGKIGSRYS
>NC_014501.1|WP_041933901.1|4717618_4718197_+|HEAT-repeat-domain-containing-protein
MTDWREYEQIIIDDFCQALQADPNPKIRAKVAEILGKIAIGNEKAFLALRQAFLKDKNRQVRISAAEAITQIIPQSNLKSIMSEPSKYNISNPQNVQIVETTAGGDAVIHKYAQQQNLTEAAQQIQDLIEYIQKTNPTTTEEEAVKQIIKQNPTLKTRLVNALKQGGTEALKVFFPLVSIPLETIRGFIEAD
>NC_014501.1|WP_013324263.1|4718418_4718997_+|DUF1802-family-protein
MSLSTLTTNHCLKEWEVAVNALEAGKTILLLRKGGIKETQGKFEVKEPQILLYPTYEHQKPDLLKPEYAAQVTAVESGWHPDTVRIGSWAEITDIFAITEEIILKKLYLYHIWNEKFITERLKFKPRQPLYVLLLRVYLLPYPVMISYRSEYGGCKSWIDLNESIDLGDIQPVLDDTQYNQHRSTIGQIVNN
>NC_014501.1|WP_013324264.1|4719091_4719586_+|host-attachment-protein
MNQSVVAVLDGTRARFFTLEPAESPEYQSGPNLIERDCLTNTVKETQGKDLWANTKTGRNRGAGSQAHGYDDHRQNHINEFERSFAKEIVNKLIGLSDEYHPQQVVLVAEPKFLGLVREAITPQLPKSLKLQELAKDLCKMKALELHEYLADKQLLPRRKVAAR
>NC_014501.1|WP_013324265.1|4719865_4720588_-|VWA-domain-containing-protein
MQVNYSLSQSLIAVNSAATVDLLISFISSASSKDSSRRPLNLSLILDRSGSMAGSALKYAKMAAQKLVEYLTPEDILSVVVYDDFVETIVAPQPVKDQAAIKNQINRINARGCTNLSGGWLTGCDHVKANLSAERLNRVLLLTDGLANVGNSDPKILTKTATEKAEQGIITTTLGFGTYFNEDLLINMANGGKGNFYFIQSPQDAAQVFEIEIESLVSDAVKEGTGGSYMALGKVRRLVQ
>NC_014501.1|WP_013324266.1|4720934_4722878_+|cyclomaltodextrin-glucanotransferase
MEKTIPLPSSKNQYEVTQKEAEIKEDLIKTEERTKESEIDLEFLYTRDVEFRQETIYFLVVDRFYDGDPNNSEGPNPELYDPQQQEWGKYWGGDLQGIIEKLDYLKNLGVTALWLTPLFEQIEDLFVESAAIHGYWTKDFKRINPRYIGEGENPSLNQTQDSRDTTFDRLIRELHKRNMKLILDIVCNHSNPDISGKKGELYDDGVKIADFNDDKNHWYHHYGEIMDWEDEWQVKNCELCGLATFNENNTEYRNYIKAAIKQWLDRGVDALRVDTVKHMPIWFWQEFNADIQSHRPDVFIFGEWIYSSPNDPDSVAFVNNSGMSILDFGLAMAIRQALGTWAEGGFHLIQEVLDLDCRYEGATELITFIDNHDMHRFQSLNPDPDILRMAVALIMTSRGIPCLFYGTEQYLHNDTNADGNPYGNNDPYNRPMMEKWETDTPIYQDVRRLSGVRRLNPAVSMGSQWQKYLTPDVYCYIRRYRDSVVFVAMNRGEPVTLEAVDTELPDGEHTDIISLNKYQVVEGHLHNLHLDSKQILIISRVGERVKGQSIVRVQVNGVNTQPGETIVVTGDCPELGNWDIGKAYPLEYINQNTWFGEIPFNESTGKPIAYKYAMWREGQAPLRENLVSRRWVVASEGTVKWRDRWAW
>NC_014501.1|WP_013324267.1|4722975_4724799_+|malto-oligosyltrehalose-trehalohydrolase
MKLGANYLGNNECEFTVWAPLLKEVAVEIVAPEKRLLPMEKDDLGYWKVREKNITPDTLYWYQLEGEKKRPDPASHFQPKGVHDPSQVIDHSTYTWQDQDWKNIPFPDWIIYELHVGTFTPEGTFEAIIARLPDLKELGVNVIEIMPVAQFPGARNWGYDGVYPYAVQNSYGGPNGLKKLVDACHQQGLAVILDVVYNHLGPEGNYVSDFGPYFTLTYNTPWGTAVNFDDAHSYGVRNFVIENAIYWLGEYHFDGLRLDAIHAIYDLGAKHILAELAEAVEVFSQQQERPLYLIAESDLNDVKVINPQELGGHGIQAQWSDDFHHCVHTLVTQESIGYYQDFGQCQQLAKVLQEGFAYTWNYSPSRRRYHGNYAGDRPPYQLVVCIQNHDQVGNRMLGERLSHLTSFDALKLAAATLLLSPFIPLLFMGEEYGEDAPFLYFIDHSDPNLIKAVREGRKAEFEEFHAEGEPPDADSIETFKKSTLNWQSRKEGKHKVLWEFYRELIRLRQEIPALTQREQYNSKISFLEDEKIISVYRWSADSEVIYLLNFNGKEVDYSLVIPSGNWQKRIDSSESQWQGSGSKLPQSLSQSQSLNLSPYTAVLYQKA
>NC_014501.1|WP_013324268.1|4724907_4727697_+|malto-oligosyltrehalose-synthase
MRIPTATYRIQFTPDFGFNQARKIANYLSELGISDLYASPIFKARSGSTHGYDVVDANLLNPELGTEEDFNALISDLQDKKMGWVQDIVPNHRAYDSDNKALMDVLENGKDSEYYNFFDIEWEHHYEDFREKVLTPMLGDFYGNCLENGDIQLDYNQSGLSVKCYGSFKIPLRIESYLQFLTYGLGKLNRQLGRSHPDFIKVLGILYLIKNVPSETSGRQRKDQVEFIKGLLWELYNNNPAVQELIDQNIVTFNGEAGKAESFDLLDQLLKEQFFRLSFWKVGAEELNYRRFFTVNELICLRVEDEQVFQKTHSLIKDLVQAGKFTGLRIDHIDGLYDPSQYLSRLRETMGDVYLIVEKILEKEEKLPTHWSIQGTSGYDSLNRYNGVFSQVKNQDRFSEIYEKITRFDGDYEKVLADKKRLIAETNLVGDVDNLAHLLKRIAGQYRYGRDFTLSGLRKAILEVLVQFPVYCTYTNQEGITDIDKAYVKEAIEKAKANLPRLLKELDLIEKFLLLEYDENLSEEEQKKWLHFTMRFQQFSGPLMAKGIEDTLFYVYSRFVALNEVGGFPQTFGITLEEFHQFNREQFAGHPHTMNASSTHDTKRSEDVRARLNVISEIPDEWERQLNEWRQLNKDKKVRQGKRIIPDNNDEYFFYQNLLGAFPFDDSDYPQFVERIKDYMIKAVREAKIHTAWLRPDSVYEEGFIKFIEQVLEPENNHFLEQFRIFKDKIAIYGIFNSLSQTLVKITSPGLPDFYQGTELWDLSLVDPDNRRPVDYEKRLSYLEEIKHRQNDLHSLIDELKENPTDGRLKLFLIFRALAARNQHISIFQQGDYLPLQVKGQYQDHVIAYARQHENQTAITVVPRFITTLIEPYQAPLGEEIWGDTYLEIPSNLQSDWKNIFTDETVTQTDTIPIGKVLNSYPVALLISE
>NC_014501.1|WP_013324269.1|4727822_4728515_-|manganese-catalase-family-protein
MFYHKKELIEKAVNIDDPNPRFAQLLLEQFGGATGELTAALQYWVQSFHVEHPGIRDMLQDIAVEEFSHLEMVGKLIEVHTQKVDQTEAFSSTLFAIRGKGPHFLDSQGSAWTANYINEGGDVVRDLRANIAAEGGARQTYEALIKLAPDPKTKEVLIHLLTREISHTKMFMKALDSLGKLDDPFFGNIQPDETVDLYFNLSTNGQEDQRGPWNSDENFRYIANPVPDQK
>NC_014501.1|WP_013324271.1|4728722_4729691_-|YegS/Rv2252/BmrU-family-lipid-kinase
MTRSAYLIYNPTAGQGDPEQELQLIQSLLAPEFDLYTEKTTEEVDAAALAKDAIEKGFKTVIAAGGDGTISATAGVLINSHVAFGILPCGTANALASTLGIPPSAEEACQTILAGHTRIVDTATCNGQPMLLLAGVGFEADTIEGTNKQAKKNWGMLAYVFSGLRQLREFERFEAEIETDDKLIEVTAAAVTVANAAPATSILAQGPARVICDDGLLDVTIVAPKNRASAITASYHLLQTALQNEEAQRDDIGYLRTKRVKITTSPLQNVVVDGEVIGHTEIEVECIPHSLIIFVPATGSNSPPEKLENLPESKVETKTKAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	NC_014501.1	927190-927219	2	0.933
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	NC_014501.1	927190-927219	2	0.933
NC_014501_6	6.4\|927166\|30\|NC_014501\|CRT	927166-927195	30	NC_014501.1	927010-927039	1	0.967

1. spacer 6.1|927034|30|NC_014501|CRT matches to position: 927190-927219, mismatch: 2, identity: 0.933

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
cagaagaagtctctgaggaagtctctgagg	Protospacer
********.***********.*********

2. spacer 6.2|927082|30|NC_014501|CRT matches to position: 927190-927219, mismatch: 2, identity: 0.933

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
cagaagaagtctctgaggaagtctctgagg	Protospacer
********.***********.*********

3. spacer 6.4|927166|30|NC_014501|CRT matches to position: 927010-927039, mismatch: 1, identity: 0.967

ctgaggaagtctctgaggaagtctcagaag	CRISPR spacer
ctgaggaagtctctgaggaaatctcagaag	Protospacer
********************.*********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	NZ_CP045386	Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence	169856-169885	6	0.8
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	NZ_CP045386	Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence	169856-169885	6	0.8
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	MF158043	Shigella phage Sf16, complete genome	12973-13002	7	0.767
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	MF327003	Shigella phage Sf14, complete genome	11082-11111	7	0.767
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	MF158043	Shigella phage Sf16, complete genome	12973-13002	7	0.767
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	MF327003	Shigella phage Sf14, complete genome	11082-11111	7	0.767
NC_014501_8	8.7\|1334098\|30\|NC_014501\|CRT	1334098-1334127	30	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	108501-108530	7	0.767
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP039918	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence	190987-191016	7	0.767
NC_014501_16	16.3\|4529985\|30\|NC_014501\|CRT	4529985-4530014	30	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	61718-61747	7	0.767
NC_014501_16	16.3\|4529985\|30\|NC_014501\|CRT	4529985-4530014	30	NZ_CP007006	Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence	30052-30081	7	0.767
NC_014501_16	16.3\|4529985\|30\|NC_014501\|CRT	4529985-4530014	30	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	64444-64473	7	0.767
NC_014501_1	1.1\|51952\|31\|NC_014501\|CRISPRCasFinder	51952-51982	31	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	150482-150512	8	0.742
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	MK448904	Streptococcus phage Javan316, complete genome	33700-33729	8	0.733
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	313754-313783	8	0.733
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	MK448904	Streptococcus phage Javan316, complete genome	33700-33729	8	0.733
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	313754-313783	8	0.733
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	994406-994435	8	0.733
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1497838-1497867	8	0.733
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1497782-1497811	8	0.733
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	985388-985417	8	0.733
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1122943-1122972	8	0.733
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	848536-848565	8	0.733
NC_014501_8	8.7\|1334098\|30\|NC_014501\|CRT	1334098-1334127	30	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	358475-358504	9	0.7
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1249401-1249430	9	0.7
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1249408-1249437	9	0.7
NC_014501_8	8.10\|1334254\|30\|NC_014501\|CRT	1334254-1334283	30	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1176348-1176377	9	0.7
NC_014501_6	6.1\|927034\|30\|NC_014501\|CRT	927034-927063	30	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	36775-36804	10	0.667
NC_014501_6	6.2\|927082\|30\|NC_014501\|CRT	927082-927111	30	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	36775-36804	10	0.667

1. spacer 6.1|927034|30|NC_014501|CRT matches to NZ_CP045386 (Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence) position: , mismatch: 6, identity: 0.8

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
tggcagaaatctctgtggaaatctccgaga	Protospacer
..* *********** *********.***.

2. spacer 6.2|927082|30|NC_014501|CRT matches to NZ_CP045386 (Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence) position: , mismatch: 6, identity: 0.8

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
tggcagaaatctctgtggaaatctccgaga	Protospacer
..* *********** *********.***.

3. spacer 6.1|927034|30|NC_014501|CRT matches to MF158043 (Shigella phage Sf16, complete genome) position: , mismatch: 7, identity: 0.767

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
cgaaagaaatctctgtggaagtctcttcag	Protospacer
*..************ ****.*****  .*

4. spacer 6.1|927034|30|NC_014501|CRT matches to MF327003 (Shigella phage Sf14, complete genome) position: , mismatch: 7, identity: 0.767

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
cgaaagaaatctctgtggaagtctcttcag	Protospacer
*..************ ****.*****  .*

5. spacer 6.2|927082|30|NC_014501|CRT matches to MF158043 (Shigella phage Sf16, complete genome) position: , mismatch: 7, identity: 0.767

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
cgaaagaaatctctgtggaagtctcttcag	Protospacer
*..************ ****.*****  .*

6. spacer 6.2|927082|30|NC_014501|CRT matches to MF327003 (Shigella phage Sf14, complete genome) position: , mismatch: 7, identity: 0.767

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
cgaaagaaatctctgtggaagtctcttcag	Protospacer
*..************ ****.*****  .*

7. spacer 8.7|1334098|30|NC_014501|CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaaggcgtggagaaaggcgtggagaca	CRISPR spacer
gcgatgacggtggagaaaggcgtgcagaca	Protospacer
* ** ..  *************** *****

8. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP039918 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
gcagaaggcgtggagacagacgaggaggct	Protospacer
* ..***************.** ****.*

9. spacer 16.3|4529985|30|NC_014501|CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 7, identity: 0.767

ttctctagatgattctctagatgagtctct	CRISPR spacer
ggctttagatgattctctagatgcggcatt	Protospacer
  **.****************** * * .*

10. spacer 16.3|4529985|30|NC_014501|CRT matches to NZ_CP007006 (Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence) position: , mismatch: 7, identity: 0.767

ttctctagatgattctctagatgagtctct	CRISPR spacer
ggctttagatgattctctagatgcggcatt	Protospacer
  **.****************** * * .*

11. spacer 16.3|4529985|30|NC_014501|CRT matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 7, identity: 0.767

ttctctagatgattctctagatgagtctct	CRISPR spacer
ggctttagatgattctctagatgcggcatt	Protospacer
  **.****************** * * .*

12. spacer 1.1|51952|31|NC_014501|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 8, identity: 0.742

ccctagtatttccccaaccccctccgccgcg	CRISPR spacer
ctcccccctttccccaaccacccccgccgcg	Protospacer
*.*.  . *********** **.********

13. spacer 6.1|927034|30|NC_014501|CRT matches to MK448904 (Streptococcus phage Javan316, complete genome) position: , mismatch: 8, identity: 0.733

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
ttaaagaaatcgctgaggaaatcgctaaaa	Protospacer
. .******** *********** **.*..

14. spacer 6.1|927034|30|NC_014501|CRT matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 8, identity: 0.733

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
agtcatgaatctctgaggaaagctctcagg	Protospacer
 .  * .************** **** ***

15. spacer 6.2|927082|30|NC_014501|CRT matches to MK448904 (Streptococcus phage Javan316, complete genome) position: , mismatch: 8, identity: 0.733

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
ttaaagaaatcgctgaggaaatcgctaaaa	Protospacer
. .******** *********** **.*..

16. spacer 6.2|927082|30|NC_014501|CRT matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 8, identity: 0.733

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
agtcatgaatctctgaggaaagctctcagg	Protospacer
 .  * .************** **** ***

17. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgcggcgtggagacgggcgtggagatc	Protospacer
 .* . ***********.**********.

18. spacer 8.10|1334254|30|NC_014501|CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgcggcgtggagacgggcgtggagatc	Protospacer
 .* . ***********.**********.

19. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgcggcgtggagacgggcgtggagatc	Protospacer
 .* . ***********.**********.

20. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgcggcgtggagacgggcgtggagatc	Protospacer
 .* . ***********.**********.

21. spacer 8.10|1334254|30|NC_014501|CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgcggcgtggagacgggcgtggagatc	Protospacer
 .* . ***********.**********.

22. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgcggcgtggagacgggcgtggagatc	Protospacer
 .* . ***********.**********.

23. spacer 8.7|1334098|30|NC_014501|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 9, identity: 0.7

gagaaaggcgtggagaaaggcgtggagaca	CRISPR spacer
gtagaaggcgtggtgaaaggcgtggttcag	Protospacer
* ..********* ***********    .

24. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgctgcgtggagacgggcgtggagatc	Protospacer
 .* .  **********.**********.

25. spacer 8.10|1334254|30|NC_014501|CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgctgcgtggagacgggcgtggagatc	Protospacer
 .* .  **********.**********.

26. spacer 8.10|1334254|30|NC_014501|CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gagaaaggcgtggagacaggcgtggagaca	CRISPR spacer
cggtgctgcgtggagacgggcgtggagatc	Protospacer
 .* .  **********.**********.

27. spacer 6.1|927034|30|NC_014501|CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 10, identity: 0.667

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
actttgaaatttctgaggaaatctctcctc	Protospacer
     *****.***************

28. spacer 6.2|927082|30|NC_014501|CRT matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 10, identity: 0.667

cagaagaaatctctgaggaaatctctgagg	CRISPR spacer
actttgaaatttctgaggaaatctctcctc	Protospacer
     *****.***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1246218 : 1255356

uncultured_Caudovirales_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013321250.1\|1246218_1248582_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-16	40.5
WP_013321251.1\|1248803_1249301_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_041933146.1\|1249324_1249687_-	response regulator	W8CYM9	Bacillus_phage	5.5e-15	34.8
WP_013321253.1\|1250074_1251055_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-30	39.7
WP_013321254.1\|1251207_1251591_-	plastocyanin	E3SLB8	Synechococcus_phage	2.5e-18	49.5
WP_013321255.1\|1252112_1252283_+	hypothetical protein	NA	NA	NA	NA
WP_013321256.1\|1252332_1255356_+	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	1.6e-19	30.3

DBSCAN-SWA_2

5961590 : 5975725

Bacillus_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013325394.1\|5961590_5963879_+	GAF domain-containing protein	W8CYF6	Bacillus_phage	6.3e-32	34.1
WP_013325395.1\|5963958_5964645_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_013325396.1\|5964712_5965723_+	chemotaxis protein CheB	NA	NA	NA	NA
WP_013325397.1\|5965848_5966361_-	inorganic diphosphatase	A0A1B1ISK6	uncultured_Mediterranean_phage	3.0e-27	44.7
WP_041934048.1\|5966521_5968231_-	AarF/ABC1/UbiB kinase family protein	C7U092	Ostreococcus_tauri_virus	5.9e-51	31.6
WP_013325399.1\|5968353_5969133_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-31	36.2
WP_013325400.1\|5969350_5971108_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	5.7e-09	28.5
WP_013325401.1\|5971096_5972380_-\|transposase	transposase	A0A191SB13	Nostoc_phage	3.6e-101	50.3
WP_013325402.1\|5972488_5972962_-	cupin domain-containing protein	NA	NA	NA	NA
WP_013325403.1\|5973090_5974344_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.3e-51	30.8
WP_013325404.1\|5974354_5974762_-	hypothetical protein	NA	NA	NA	NA
WP_013325405.1\|5975128_5975725_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.0e-31	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_014503

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_014503_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014503_1

6886-6971

TypeV

Consensus_repeat	Method
GTTGCAGGAGCAGCTAATGATTG	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NC_014503_1

>merge|NC_014503|1|6886-6971|CRISPRCasFinder
GTTGCAGGAGCAGCTAATGATTGCCACCCAGGAGCGCGATGAACTTAAGATGAAGGTAGAAGAGTTGCAGCAGCAGCTAATGATTG

>NC_014503|1|1|6886-6971|CRISPRCasFinder
GTTGCAGGAGCAGCTAATGATTG	CCACCCAGGAGCGCGATGAACTTAAGATGAAGGTAGAAGA
GTTGCAGCAGCAGCTAATGATTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014503.1\|WP_013325748.1\|4642_6184_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380492
NC_014503.1\|WP_013325747.1\|3216_4566_+\|hypothetical-protein	unknown	unknown	unknown
NC_014503.1\|WP_013325745.1\|7_757_+\|hypothetical-protein	unknown	unknown	unknown
NC_014503.1\|WP_041934454.1\|8396_11405_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_014503.1\|WP_013325750.1\|11407_12595_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_014503.1\|WP_013325751.1\|12661_13102_-\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_014503.1\|WP_041934456.1\|15845_16028_+\|hypothetical-protein	unknown	unknown	unknown
NC_014503.1\|WP_013325753.1\|14525_15743_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NC_014503.1\|WP_157872072.1\|7994_8342_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_014503.1\|WP_013325746.1\|746_3239_+\|hypothetical-protein	unknown	unknown	unknown
NC_014503.1\|WP_083786969.1\|21075_21237_+\|transposase	unknown	unknown	gnl\|CDD\|315923
NC_014503.1\|WP_013325752.1\|13382_14243_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274042
NC_014503.1\|WP_013325754.1\|21411_21789_+\|hypothetical-protein	unknown	unknown	unknown
NC_014503.1\|WP_083786968.1\|20885_21101_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
NC_014503.1\|WP_013325748.1\|4642_6184_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	2.38906e-74
NC_014503.1\|WP_083786969.1\|21075_21237_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.24584e-14
NC_014503.1\|WP_013325752.1\|13382_14243_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	1.93808e-45
NC_014503.1\|WP_041934454.1\|8396_11405_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.18528e-18
NC_014503.1\|WP_013325750.1\|11407_12595_-\|TIR-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.1964e-26
NC_014503.1\|WP_013325751.1\|12661_13102_-\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.39326e-33
NC_014503.1\|WP_013325753.1\|14525_15743_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.24855e-56
NC_014503.1\|WP_157872072.1\|7994_8342_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	6.23289e-08
NC_014503.1\|WP_083786968.1\|20885_21101_+\|hypothetical-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.75565e-07

>NC_014503.1|WP_013325748.1|4642_6184_+|amino-acid-ABC-transporter-substrate-binding-protein
MNYNKKWTCDGIPKNPKYQGKGKSHSPVENRPNYPHCVDCGLPREAMIKPGGGGSKIGLMLGGATVILALGGVAAYGLRSQFVKPSSSSQCMVSGPNLETERVSSGERNLFSQNNINLDLKRGIEDFKLGNYETAAKFFEKAKEAARTDPEPKIYYNNALARYKKSPFKVAVVVPIDNKGTSAQEILRGVADAQEKFNQNGGAENRLLEVMIFNDGNDPQVAARIAQQISQDDTILGVIGHNSSEASQAALPCYQEKGIAMISPTSTSTSLKGNTFFRTVANDGVTAKVMGDYLTNDLNAKNIIIFYDSQSNYSKSLLQEIESQLPPAIIKDRIDINPPDFDVKANVDSSIQAGGDTAILLPSTETTSVAIRIAEEIKGRMKILGGDALYLPDTLIQGGNAVENMVVVAPVTPSDNYQTEANPSWGGQINWRTVAGFDATEALIEAIKNSPTNPTRQNIPTNLASINVNSEASGKALQFQEGERSSQPVLVIASKDAPAPKGAEFGFKPLSKP
>NC_014503.1|WP_013325747.1|3216_4566_+|hypothetical-protein
MMRSNRGKYWLILGLFFFSFDGYLCYNYISLAEKKETVVNEKKLKGDEHLLLEKMEQLNISYSAFERSLNKFIDDLDKVNRKELSPNDVDYQNPREKLEQLKRATEQLREQLAANNHQEIDLIIQIIEKKLDPFFQLLGNKIDVKHLYKVQIFLNIPGRLNTNQQLNKAIIYLSNQNKDLKKHLKKANQTLDPSPIKGEVIIVILLTFWIFIFILIIIKDKILTRLYQYQSEENLFDKPELIEKHIEESIQGIDGLINQPFLPDNEAKYNEELENIKKSIEQIKAEIYQAQNILLLPPVEEFTAESIPQPPKLIPAKNEEFTLLYEELVLSYNQNPNFYAPNALRVSQTDETIINPNYERQKKPRLSLQTNGMYWLIPVKNVTYLVPIKTLKLNENNFQFFEELFICFGYQPDFSKRFKLLKPAVIRASGEEWELTEKGVLQFESGEYA
>NC_014503.1|WP_013325746.1|746_3239_+|hypothetical-protein
MLSNVRVIASAVKEGKSLPLLLYDDDIARQWQENTENILIYKRKTLASLSPEELEDLKNNREVIVVEKNDLFLDELYFIYLDEALPGGLLPETKNNDSIIFNDRRVTPLIPLNQILLDYFTPEDLVSKIKFQMLKGEENKVRLTLNLPLSGIQSDKSNENPKVYSLSKDYTLFEKNLLTDQLPVLEVWPNFQAQGWKEYYGFYYDAELGESTFQVSFPNARYTHSFKQGMGTYQMVHLESFPECIHCLDGDKTIIGLILLKSPETVELKKKWKVGVDFEALFTNVYVNDKGVAEALKMEDLLYQVTESNSETRLTVLFEYFIPQAFLPKEKPLPLPTVLTMNGKNPQNEKLLPILDGRIYVPDSSRFDPKEEWVKTDLKWSVNNLPYIEVFLKHLALHITALAAYSGVREIEWFLSYPSPLSRRYKRLYVSLWQDLTTELEKTTGIIQKSPDFNFNNLRSDSLAFAQYFRDFEEYDLVYTTCVYLLDRTADIGIWEDNQLIHQTTISLGEKDLFRDFLRSNLKFVEQKFKLDPLDRRRWKDLTREAFERKLNVWIRWESHHWLKSERILLQDDPDLQGLVRLTSIGLAGLYYYVGIILEVLGREGKYKRNKITPVYLGGRGSHILNWLDNRGVFNKNSEINELFSRMLSAGSGFEDTEELTRLSRHLGDEVACGLVLNDTRLSQIENNINEGLIAGEDFLLKVFNNRENQENTKRISRESRLKLEEGEEVIDFKIPELVQLPKFLYEFHKALRDLDIEEITPLKGYVRSPERDKNKKLWDETQRHLESYLLNKKEHFSREPPFILGLKALLQVLGQEWVESGTYDEEQSR
>NC_014503.1|WP_013325745.1|7_757_+|hypothetical-protein
MNKKNQPINPMTQKVEYLMRAIYFVETKLGELETSLLEIKNRSSSSNHDLPNAARVTGFLQQAKVNKVELSESQLIEVYNEIPQLLSAYAVKVALTPESFREPTEGNIFLEESETGNYWIIRTGNEIHLLVPKVSLKFDIYKLKTVQHLFSFQGEVKSQNSEFFLMSPAKVSWLSNGKQWKLEDKGELYLLGLGEIFQGSQERDGRLQERQKLLCLLEQVLKENQVLRSQMEGLQSRLEVIEEGVKDAF
>NC_014503.1|WP_157872072.1|7994_8342_-|hypothetical-protein
MTKVEFNPDSSFALIATAYSDNNQIKLWDYKGRQIAQFEGDWKETVSISFTPEGKYLFAAGDNGIIQQWNVGEINLNTLLTNGCNWLDFYSTTHPTEYKKVGQGCGKIKTSVSKS
>NC_014503.1|WP_041934454.1|8396_11405_-|WD40-repeat-domain-containing-protein
MFLQEYFDNLKKKLLFNDSPQQDSQFPDEYSQFQRLIIYQKVLLNPSSSHSINNSQNLESSKQYLIELGLVIDWESNLQIASRLHQEIINLTWIQEELKNNFIYNNISEWSSAISNLLNLLDQEEDLKSKIIDLVIDLITLNSNTVEGIEERIEEIIKSNIIGNWDNPQIPWGQNLLSNLITNLLLDNSEDKYRQFQRLIIYQKILNSSLPKAYPDTHPVYSAQEELIELNLVNRQEGDFLALTNPLNEKIVDANFIQENLIRNPFYQEIQKLSIKIPSSLDNLIEESINKLSETEPNKIPKLKSIITPPPNGWRILQQKLISCWNKFGQFIGKVRRRWRIFLGLFFMSLIIVIWIPPYNPFVNREMGNNATEARKSFPNNQLDSLISALQVGDQLESKYKKATNWSNYPTLTPIFALQYIFNNIYEKNYYKEHDSPVLTLSFSKDEKYLASGGDDGSIRIWDLELPTEQPFKNPPVLIDPKQINQGNLKSISFIPNTSPPIIVTGGNKGQNLKFWDISGKSRGEFFIDKYEHGEIGTISLSSDGKLLVTLLKLEAQNKNSVVQLARVSCNSKCHVEKIGNLPGDKFTTVSLSPKLNEQKYVIATANRENQVQWWTISEDNKILPLENYPIINTKERIQSIYFSANGQFLVTVDNKSGKVQLWELQKNLKSDSLDLGNSKNIRLSFVSLNINQRKIEYLATTGPSGKIKFYKVPASSDSQSNPLLTLDELNHDISDSSNPVSSISSSPQGKYLATGEESSTIRLWDLSNLKKYHETIFLDDEGTIKDLKIVQTQNGTQYLAYLIEKKDNKRDSSNSSTLELKKISDKNKMDLKNYSVNQISFFLDLDNDNQSPNNSRLMTVAYKDNKSVVSLMDFETASLKEYVVVDSNKITLIAGKDNFFITIYNDNKKAYLYQGKDLKNPKPLNNDFDNIINANFTPDGNKLVTIAENGQVKLWNLEQKILDKNWLSETGLKQISFSPDGKYILGLDEKGQVKIWSWPSF
>NC_014503.1|WP_013325750.1|11407_12595_-|TIR-domain-containing-protein
MTEKSSIQIFLAYAEEDREDVYELYEKLESKDYKPWLAPKDLKAGQIWPERISQAIRESSIFIACFSETSVKKQGYVQKELRQALNLMAGMPVGQIYFIPLKLNNCELPELLIPNIGYSLPDIHYIDYWTEDGFDLLLNSIQEQFPQKIDTSSLIPPIIQKIIAATNAGDFCYIFSSQFNHKEELLKDFKNELNSKPDEIIYKMVSQINFKSFLNKNTKYSLNDLDKDPRGLIKNNSDKKIFFILDFFEAEDNNSSLEKKIEYRKKVWLSLQLMYKKKRNQEYKNVSLVFLDTLPKSTETVNSNFENIILGWKISVQNSLYPKGEPITGLSAHLKREKNIHDWILSWTNGHPYLIQQLCQLVCSPEYQTNPNQKESNYIDELVKSEIIQPLTNRG
>NC_014503.1|WP_013325751.1|12661_13102_-|toll/interleukin-1-receptor-domain-containing-protein
MKEKSSIQIFLAHASEDKPQVLELYNKLQDEGYKPWIDKEDLLPGQSWPEEIPKAIRNSDIFIACLSSTSVLKRGYIQREFRLALNFMAEMPAGQIYLIPLKLDECEVPDLQQVDYGIALKNIQWLDYWKPNGFERLLRTINNYFS
>NC_014503.1|WP_013325752.1|13382_14243_-|tyrosine-type-recombinase/integrase
MGTRKLATAMELKLIQMWLHGKSPDSRRSYMRDIQDFLEFTHKPIEQITIADIIDWDSALALRYAPTSRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDEWERMLYAEPNRQHQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTLFGKGNKTRKVTITPQLWQVLKATKAADAKGDSPLFLNYRHKAYSTVQVWRIVKAAGERVGIYGVSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHILPGDYGAQYTKVKLPF
>NC_014503.1|WP_013325753.1|14525_15743_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLKVVKIRLYPDEQQRQSLEQSFGNCRWLWNYCLNLMNETYRDTGKGLSGYEVKKLIPQLKKEYEWLSLAYSACLQQVCLNLGVAFNNFFEKRAKYPRFKSKHGRQSIQYPQNVKVAEQSVTIPKIGEVEAIIHRPVEGKIKTVTVSRNCSGQYFASVLFEDGKEKPSTSSEGKAIGVDLGLAHFCITSDGSKYDNPRFLKKHEKNLKVKQQHLSRKQKGSNNRIKARKKVAKVHTKITNCREDFLHKLSRRIVNESQVVIVENLNVKGMMQNHKLAKAIHQVGWGLFCTMLKYKAEQDGKVYQEVDRFFPSSKTCHICLNQVGSLPLDVRTWTCEYCQAKHDRDVNAAINLRDEGLRILTGRINPGGFLQGQPLTSGTGDKACRPDVRRSNRGRKKSTTALSVG
>NC_014503.1|WP_041934456.1|15845_16028_+|hypothetical-protein
MARLDLLDNAALWLLAKSHQQAVEMERYNQLLEKNQPRGNGHKIFDWEKFVEFVEINGDK
>NC_014503.1|WP_083786968.1|20885_21101_+|hypothetical-protein
MDSLGKKTYGYRERNETKREGRVNMIAAWCDGKLFATFTVEGAINRTVFETWLNTCLKPGQIAIAASRNFS
>NC_014503.1|WP_083786969.1|21075_21237_+|transposase
MQPLATFHRGGQIKELIESAGCQLKYLPSYSPALNKIEQCWSWLKSRIRKRIN
>NC_014503.1|WP_013325754.1|21411_21789_+|hypothetical-protein
MEYLITPPESTEWRINPDALIEDLEKSWSQIELKTVTNPDDYYCLEWIITSPETGQRIDGALHRDLQGISLDGYILDCAAFAVWFRSLVSPSPKLVFCDQGFNSHVFLQENMTGAEIVQPFLALV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014503_1	1.1\|6909\|40\|NC_014503\|CRISPRCasFinder	6909-6948	40	NC_014503	Gloeothece verrucosa PCC 7822 plasmid Cy782204, complete sequence	6909-6948	0	1.0

1. spacer 1.1|6909|40|NC_014503|CRISPRCasFinder matches to NC_014503 (Gloeothece verrucosa PCC 7822 plasmid Cy782204, complete sequence) position: , mismatch: 0, identity: 1.0

ccacccaggagcgcgatgaacttaagatgaaggtagaaga	CRISPR spacer
ccacccaggagcgcgatgaacttaagatgaaggtagaaga	Protospacer
****************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_014502

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_014502_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014502_1

148518-148670

Orphan

Consensus_repeat	Method
AAATAATAAAGTTGTATAATTT	PILER-CR

2 spacers

The CRISPR arrays of NC_014502_1

>merge|NC_014502|1|148518-148670|PILER-CR
ATAATAAAGTCGTATAATTTTGTCTTAAAAATATCCTAATTTCTCGTTGTGTCAAGTAGACTCTCAAAAAAATAAAGTTGTATAATTTCGGAGGTTGGACAAACAGGCTAATTCAGATTCCTACTTTTTTCAAATAATAAAGTTGTATAATTT

>NC_014502|1|1|148518-148670|PILER-CR
ATAATAAAGTCGTATAATTTTG	TCTTAAAAATATCCTAATTTCTCGTTGTGTCAAGTAGACTCTCAAA
AAAATAAAGTTGTATAATTTCG	GAGGTTGGACAAACAGGCTAATTCAGATTCCTACTTTTTTCAA
ATAATAAAGTTGTATAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014502.1\|WP_013325619.1\|148882_150058_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|340813
NC_014502.1\|WP_013325613.1\|140312_141110_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350690
NC_014502.1\|WP_162052194.1\|139391_139556_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_013325608.1\|136400_136958_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371332
NC_014502.1\|WP_083786964.1\|159341_159719_-\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|319862
NC_014502.1\|WP_013325610.1\|137348_139286_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|238192
NC_014502.1\|WP_013325621.1\|151088_152954_-\|OmpH-family-outer-membrane-protein	unknown	unknown	unknown
NC_014502.1\|WP_013325615.1\|142440_146307_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_013325620.1\|150057_151023_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195
NC_014502.1\|WP_013325607.1\|135958_136390_+\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_157872058.1\|155484_156039_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_013325609.1\|137003_137228_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_013325626.1\|158673_159027_-\|MobC-family-plasmid-mobilization-relaxosome-protein	unknown	unknown	gnl\|CDD\|368576
NC_014502.1\|WP_013325614.1\|141320_142217_+\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379141
NC_014502.1\|WP_013325622.1\|153060_153900_-\|response-regulator	unknown	unknown	gnl\|CDD\|381106
NC_014502.1\|WP_013325605.1\|134189_134417_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NC_014502.1\|WP_013325624.1\|157314_157689_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_157872059.1\|156129_156969_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_157872066.1\|147980_148304_-\|hypothetical-protein	unknown	unknown	unknown
NC_014502.1\|WP_013325625.1\|157769_158693_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497

Protein	Function_ID	Function_description	E-value
NC_014502.1\|WP_013325619.1\|148882_150058_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|340813	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC. Crossover junction endodeoxyribonuclease RuvC is also called Holliday junction resolvase RuvC. It is part of the RuvABC pathway in Escherichia coli and other Gram-negative bacteria that is involved in processing Holliday junctions, which are formed by the reciprocal exchange of strands between two DNA duplexes. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. RuvC is thought to bind either on the open, DNA exposed face of a single RuvA tetramer, or to replace one of the two tetramers. Binding is proposed to be mediated by an unstructured loop on RuvC, which becomes structured on binding RuvA. RuvC can be bound to the complex in either orientation, therefore resolving Holliday junctions in either a horizontal or vertical manner. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the Escherichia coli HJR. RuvC and its orthologs are homodimers and display structural similarity to RNase H and Hsp70.	2.25636e-25
NC_014502.1\|WP_013325613.1\|140312_141110_+\|AAA-family-ATPase	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.44949e-05
NC_014502.1\|WP_083786964.1\|159341_159719_-\|GUN4-domain-containing-protein	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	6.69732e-33
NC_014502.1\|WP_013325608.1\|136400_136958_-\|hypothetical-protein	gnl\|CDD\|371332	pfam10999, DUF2839, Protein of unknown function (DUF2839). This bacterial family of unknown function appear to be restricted to Cyanobacteria.	2.6991e-05
NC_014502.1\|WP_013325614.1\|141320_142217_+\|ATP-binding-domain-containing-protein	gnl\|CDD\|379141	pfam13361, UvrD_C, UvrD-like helicase C-terminal domain. This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.	1.09754e-08
NC_014502.1\|WP_013325610.1\|137348_139286_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|238192	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.	3.78178e-40
NC_014502.1\|WP_013325605.1\|134189_134417_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.03374e-12
NC_014502.1\|WP_013325625.1\|157769_158693_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	7.84858e-11
NC_014502.1\|WP_013325620.1\|150057_151023_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.59472e-61
NC_014502.1\|WP_013325626.1\|158673_159027_-\|MobC-family-plasmid-mobilization-relaxosome-protein	gnl\|CDD\|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	5.54817e-09
NC_014502.1\|WP_013325622.1\|153060_153900_-\|response-regulator	gnl\|CDD\|381106	cd17554, REC_TrrA-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator TrrA and similar domains. Thermotoga maritima contains a two-component signal transduction system (TCS) composed of the ThkA sensory histidine kinase (HK) and its cognate response regulator (RR) TrrA; the specific function of the system is unknown. TCSs couple environmental stimuli to adaptive responses. TrrA is a stand-alone RR containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.85324e-07

>NC_014502.1|WP_157872066.1|147980_148304_-|hypothetical-protein
MIGISLSSCINDIVFGEVLEEDVNYIITSSVFKNEQELEDLITKNINDGIWKKEFREPIRALLSRLEIRQPRRDKGNSYFPLLIRSCWVSSEDDIIWNEECPPTKKT
>NC_014502.1|WP_013325615.1|142440_146307_-|hypothetical-protein
MSHQTIKLNALNKTLNGREAFDWCISRVYSHNQTIWLKFSHNQFLVGKKDDVNLCPDFWLTSGSGTNRKRTGKIANIYEYLRERSQTLEGGVFYLPGKPGDYPLKEFCQASSDIGAELDWGTHDEQWEQINRFVSLSGLYPDSAINSGGKSVHPHWRGNSDFPMNQWIYLRRLLAIIVLGDPAVCNPHQPMRLAGFLRKEKNKEQVLEYWGDHQYSYDEFIDGFKRAYNKLDLTFPVTITDDWWRTTLRPILTSTLNAPEKYSRLRHVLVDGLDGYEKQLLEEHRQQQQRLQLKQLSKKHYDTTNNLIELVKEAEARLGSDGFNWSGHRWKWSGITRARGCCPWHESKSGTAGWIAPRRGEGGWGYACPSCTDNRQIGAFAYWWYLQHGLNAAYPSGRKWVEAATEFCSYAGITVPETQWGINEQGLPEPVTDSGAAALFRAQKNVAQRQKQSFFEHIAQKVLKVSRHWRKGFGASVVEQKAAAIKDQPPSIIKYTDNMPLPTPNDYQGKAAPRILFETCYKNKITPVYLELKRLGWRGAWDRSYTGSGKSYRITEIAQDVIYLDVNYKNPSIDKIKDQFVIMPTRHDGMLLTLEGRLVRAKTEEEKTSAALKSNCINADLLNTIHQLGYDIEGSGGEGHPPNPICAMCPFWNQRVKVGDKYIPLCRTERGDGYGFLYERMEAMASSAAGTNAAAYPDQLPVPQEPSFDEEGNEIPLDGLDLRKKILAWEEASLLVTGVREISAKLTDYDRAIATIVSLIPELSHLAHQLNPIRELIEGGYKLGVEMAQKLDEKNYVPGQKKSNKYYGLSQGDLLELIGQCPQEILGTDFIEKIESALSFHNILVKPDSVRALENGGKWSSHAEKLWAAAARTAMQREANALSYQNVKNLPSNWLLHFLLIWAKLEPGIFKLEKNGHLTISIPDARHQKLANAAGFNLFLDATGDKKQTCLTLGLDPNTIIEVEEIAPMFDNLTVYNINLPGMKSNNWSNTCTEELQEFLKQTINQYGEDNVGIIGQKCHADSLGYKHWFGKDERGTNHFKGLKVLICLGTPWDNWGSVRDRYWLLNGHLDGLQEYYQAQVREKFLQTAGRQRVHLQPDREFIIIFVGTEQDLSYLGDTGALVINQDMLEFCPTAAPLRQQQKFKLLTFAKQLMITGQKITQELLAAGLGVTQSCVSKLFKGETLSWKDFQKLFQDVFNDPVGTGIISVNQITDSFWRTWLGLAETYPIEMGREFVAAIKVLGINEFLRELKQEDASTQAGILSLITPLVEGGWEMTQQFLETEGGIT
>NC_014502.1|WP_013325614.1|141320_142217_+|ATP-binding-domain-containing-protein
MLISHRCGKSIIRLAQKVVPDIEADPHQIEGTVAVVNHQTVLANLQGGDLLICRFNAPLFSWCLAALRAGYSATIRGRDIGKSLVSFARNYLDEPTDWPDVWWERFNQLVAAEILQLAETNQKQKAEALQDRYWSISYCYNELGGSCHSFDLFAQKLLNLFNDDSRKQIVFSSIHRAKGDESDRCFILKADCLPYVDKAKKSWQIEQEYNLLYVAITRAKKELYLVPFGKNDSVVYSPGVPLEVLDKPPEEIISFPVLPETDSRDKATQSPEFLIDTKIESQQCDEKPKDTVVQLSLF
>NC_014502.1|WP_013325613.1|140312_141110_+|AAA-family-ATPase
MSSSVLWRKQCKNFSWNPYQKKVLEWSLSSSKNGLIGACAGSGKTTLLEGIGGTLPTSAKIKVLAFNRHIVERLTTKGRLPKNRVSISTLHGAALGLLQQLFRGAATIDERKSFEIAKTAYDKLLLGAQQRYIQLMIAGDRSVSAEEFPVMPPFFDEGDHLQKLILRRYLAFIDELFGFTQITLTEPTPQAIASMADHFCLKFSGWISRLTEEATDEDKDAAKALDERCQYWAIFLVPYCLELAEKIASEQARLSFNDCLWLCHK
>NC_014502.1|WP_162052194.1|139391_139556_-|hypothetical-protein
MLITSISFSLLTSPAWAKNIDKAQQEAWYDKAFLLVLLGLVMISVILWLFGVTY
>NC_014502.1|WP_013325610.1|137348_139286_+|DNA-(cytosine-5-)-methyltransferase
MATRKFGQYKPIVDKDNTPTIGTLFSGGGLFDVGAMLAGIKPVWGVEFDPNSPSLSSAIAECYEKNLGRHLIKKPVQDVDFSSLVPPDFLHCSPPCQKFSLSNPQRGETDNDLELALTTRRAIETLKPQVFTLENVVPYAKSLSFQTIKETLEKLGYQYRELILDAADFGVPQCRKRFFLVATNNLIPLELTLPKKLSITWFEATVDLIDDLPESTLAAWQWQRLPFDVVQEFKNEADTAYLIERSGARNDRPLHLRTANQPAWTIKAGLGSDGKGGNRLDPINLYVKGKILRPTPRFLARIMSVPDWYELPTAMSIATTILGNGVCPLVAQQLLTALIPYLEKEKLPMSDPPVNEPNSLEIVSDEYLSADEEKELLRLERVVERSFYEAGSALRKIRALRLYRARFNSFEEYTQERFGFTRRQPYYLIEAANVVDNLKSECEPLVHILPSSERQVRPLTKLNATEQRSVWNDAVSRAQGKVPSGRIVTEALEALKQRVREKSLAPFPYNEGDVCKILVKGNPDLKGKGGHWGVIVAINNFSADIQLADGIYLAKEENLEELPYTPELREKAKIISDRLYRLSQHELEDSSKAFIAELGAEPRVILSDLEEQILNLIEKNVNLLDDAKTVAIMDSLEGKKSVLKE
>NC_014502.1|WP_013325609.1|137003_137228_-|hypothetical-protein
MTKTKRQMHERSLANLELGGRKPDYEEAKKKRNITLTDTGWDNLLVIAHKNHCRSVSELMEKIGRQEIKLSEPC
>NC_014502.1|WP_013325608.1|136400_136958_-|hypothetical-protein
MGEAKRRKKNLGDDYGQKKFSRLHSYQWEKHLLKFFSEYESQSQEFETKFISLNDDEKNLAYFQEYQKWIESYLSFYHPEDREKLGVIILGKFYDELERIQLLRDHDNRITQVAEWVMQVVLVCFYFKKYLSPRMREEYIEPLQPFYEDLILNMTFDENLKSGPNPITLKKLFEEILEIPSPTEL
>NC_014502.1|WP_013325607.1|135958_136390_+|hypothetical-protein
MGDAGDTRSQVKEESRLVSPLINREMVKVKNTGSVQAYCNAPVPPTELIVSKPLPLNESAQPNRTQETNSVEVTLIICRFSGNLADVEPIFQGSDYYLNLNPNLPFILRQQMLRDYLFDKKEQAQQQWRSISQKRTLPSVDLD
>NC_014502.1|WP_013325605.1|134189_134417_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MKTIDINQAILELSELIEIVGQGEEIIITKNNQPMAKLVSLESVAIRSPLFGSDKGLISLSDDFDEPLDDFKDYT
>NC_014502.1|WP_013325619.1|148882_150058_-|crossover-junction-endodeoxyribonuclease-RuvC
MRLALTQIRTDGGTFARASLSEATIIEYAEALQNGCIFPPLTVFLEPATGNYWLADGHHRYHAFSRIGFKEIEVDLKVGTLREAILYAVGANASHGLRRSPADKRHAVMMLLQDAEWNKYSDRSIAILTRTSHPFVAKIRNNLTGNVSSKRLYHNRYGDLGYMETEKIGKSHNFSDKPKTLKIQPAIFQYLEQLQQQWGETSLEDVLIKVLNIPSSPSVNKSPIVPTTNKRTLGIDPALGTLRWAVLEPDDDYDLPRLLDYGTITTTPKRPTSQRLSELEQDLVEILKEFAPSDVAIEIPYLNTESEQNPKNIQNALEAIGVVDLVCFRERQISPVRLYAGQWKSHICDYRADTEEITDTIAGLFNLQVRPTERLDAIAIAYAAICGVGKE
>NC_014502.1|WP_013325620.1|150057_151023_-|tyrosine-type-recombinase/integrase
MKPSVLVHQNEFALIPTEPDVLAQLLAGKRSRNTQNAYALDLRDFFYYVAGVDSPTPVIVKEFLELDQFAALSLVLKYKAHLSNERKLKEATVNRRLAAIKSLVRLGNQLGQCRFTLAEVKGDKIVRYRDTTGISKEAYRKMLAIPALDTLKGKRDYAILRLLWDNALRRGEIEQADIKDLDLDGRSLLILGKGKGQQKQSITLSRPTVEAITQWLHARRELDINQPLFIALDRSSYGHRLTGTAIYKIVESIATGAGITKKLSPHRIRHSSVTAALDATGGDVRKVQKLSRHADLNTLMIYDDNRLDVQGEISDLLSGLV
>NC_014502.1|WP_013325621.1|151088_152954_-|OmpH-family-outer-membrane-protein
MIAQYQQDSTHVSDCKATSRDEFSQQTVRAIVEELIFNRESQKIFKLITESTQYLAKILPNFAELGQAKAELLQKCDEIAANNFKDEYKEGMKLEEFSNALYKALLQSQFPGSNVEELLNIGFVVLAWWQASSSYAAAVALQAKLELLEVGQQLGHYRVGQRRVSAGKKDDVFILTLELTDKPLFHTDWRLIEHRFKSLLEKGIIDATPDLLELQLECQQLAASRGRPIVDTGGVEVLLSDFEEVVSGWYSPEIAFYFSIDFTSNLIELNSLSLEKLVELEKVVDAALPNCNLPSVGGATEELETKLRSPFDWPKSLINTFKKPFENLVKKQPVINNLGALTLIKWKSHLLKVIPDKPKGEYLPIRLNDIKQWNKVQKILNLDDGQKEELRTKVLRLAAHKQEQFNKFGEGLGRPLGKIDGKFVPAPWISDLIEVLGEDGYATDVLSLIRSELNIYVEEYDFQLVESLYKLPWDAIAVLKSAVDELAILNERPLDPITNKNRPWKDDLYQAITDFGKDPTKLLKKEVMKYSAFEVENLVRDKTAPIQEKLMETQQRLDEEIQYKGTLQDRVSSLEEQLTVERQSRQADLQTMRQEFETQIAHLMQQFLMQPPINTNSLIKK
>NC_014502.1|WP_013325622.1|153060_153900_-|response-regulator
MRKILVIEDDLRFQRICRRGCHLELEQGLFSFEFTPSTEQGLEAIKNDTEKEIVLILLDLKMEPAQINGLQFLTEVSNHNINCPIICYTAYPEKIVNLSSQNLNRVVCVLPKGQNQYQFKVLRDLMVFLLSETVSQSAITEADKELLDYPQVREAIKRFSERKKLKLIKELVADLSYPYMKEFYREVPSRAKALIDSVQQQRQKILRKWVLEKLEEKLLPSEIPTDELVIYRIEESIRRSTEKGKYYYLKWFDKNTKKDQSKYIPRSIADTLPPEFRSP
>NC_014502.1|WP_157872058.1|155484_156039_-|hypothetical-protein
MYNGKHVKVVLYLLGSIESGTEIQHLCGTNPECNPEDLVIVGYGGDGKDTLGEWDLINPQICLTGSDNIEALIVAPGYQLGLRKKSAAVDAFYFIGSAFVGNLATSGFCGENNANVLFTKPVESNKLPEDFQLQNFYPQITKVLSYSSTSSDFSLKKSEIESGQMGLESKPAPPDSEENFDLSP
>NC_014502.1|WP_157872059.1|156129_156969_-|hypothetical-protein
MSKHIRALFKHKIALHTTEQGFAMVIALGLGVAILFIALAALIASETHQKIVNSEIQTKKIEDALDSGLAHFGSFMAKNGPLLDINRESWTSHINSDTPSDLKLQKLLRICKTDQEWNHQKELIDLFASGGFQMLESSNKEPYSFAVPEFDFNADKNILKVVLLAQNSDGSAVSQLNLQFQVNTLPLKIPVLWVQKGWEGTGYLTFEGNVWASNCSFPIDKVRLKEDTYQAKYVALEPPPLPNLEEISSRIPTSQQKLILKDSSVNSLLSLPRVKDKPS
>NC_014502.1|WP_013325624.1|157314_157689_-|hypothetical-protein
MVNFTPNTSTLNIGDNQTLTLINEQNERYIDLGETLSSYGKNLEWWQTLTPEKVKRLKSHGFSGKTQPISIILPNTKVETLPLITYSDWVAINSYFAYLRNVQALNSFSYITKDWMKLKLSKSS
>NC_014502.1|WP_013325625.1|157769_158693_-|relaxase/mobilization-nuclease-domain-containing-protein
MIAKQIKGTNFYGCLAYVLGRTGHVVIDSNVNVTSPAELATHFEVCCHRNPRVTRPVYHAMLSLVKGEKLDPLTWKSVASDFMRHQKFHNVPYLVVQHNEKDHDHIHIVAARVRSNGTCVSDSWDYIEGQKAVRHLEEKYGLQTPVPKRYKLRDTEGVKLDDYSPPDKEKDKQHAYNLLKTTIDSVYPHSSSLVDLATMLRQQDIELGIRKTQRTNTVQGVRYQIGKFNFSGTQLGKDYTLPGLTYKSRRSHQLTFNPTTDLALIESLKNLQFAHQLEQIQIQQEVQIELEADEFIEIRLRPRSRGR
>NC_014502.1|WP_013325626.1|158673_159027_-|MobC-family-plasmid-mobilization-relaxosome-protein
MTSQRLCKFQLRLTQLEKVKAEQLADDLGITLSDVFRSVIYKKFLVFHIPDVNIRTYLKLGKISNNINQITKVLNTHNKFNANVPYDVIFELKEQLANVSTQIDQIREQMDYDCQAD
>NC_014502.1|WP_083786964.1|159341_159719_-|GUN4-domain-containing-protein
MHPYVERTLERWLRVSDIKNLPFELLQEIDKMWSDSSDGHFGFSTQAKIYQELGGSNDFNWNTWLSFCDRVGWRFDEDWHDYDELSCSSLRAGKLPLLTIVDGKPRFTVFCWSRLVTFAQKITEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014502_1	1.1\|148540\|46\|NC_014502\|PILER-CR	148540-148585	46	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	148538-148583	0	1.0
NC_014502_1	1.2\|148608\|43\|NC_014502\|PILER-CR	148608-148650	43	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	148606-148648	0	1.0

1. spacer 1.1|148540|46|NC_014502|PILER-CR matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcttaaaaatatcctaatttctcgttgtgtcaagtagactctca	CRISPR spacer
tgtcttaaaaatatcctaatttctcgttgtgtcaagtagactctca	Protospacer
**********************************************

2. spacer 1.2|148608|43|NC_014502|PILER-CR matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggttggacaaacaggctaattcagattcctacttttttc	CRISPR spacer
cggaggttggacaaacaggctaattcagattcctacttttttc	Protospacer
*******************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13873 : 43305

Aphanizomenon_phage(33.33%)

integrase,transposase

attL 41865:41882|attR 47053:47070

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083786960.1\|13873_14200_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013325523.1\|15849_16119_-	DUF370 domain-containing protein	NA	NA	NA	NA
WP_013325524.1\|16452_16674_+	hypothetical protein	NA	NA	NA	NA
WP_013325525.1\|17141_17381_-	hypothetical protein	NA	NA	NA	NA
WP_013325526.1\|17427_17604_-	hypothetical protein	NA	NA	NA	NA
WP_013325527.1\|18295_22606_+	legume lectin beta domain-containing protein	NA	NA	NA	NA
WP_173362888.1\|22695_23476_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_049802839.1\|23547_23775_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_013325528.1\|23897_24260_-	hypothetical protein	NA	NA	NA	NA
WP_013325529.1\|24256_24571_-	hypothetical protein	NA	NA	NA	NA
WP_013325530.1\|25970_26159_-	hypothetical protein	NA	NA	NA	NA
WP_041934409.1\|26155_26500_-	hypothetical protein	NA	NA	NA	NA
WP_041934377.1\|26591_26906_-	hypothetical protein	NA	NA	NA	NA
WP_041934378.1\|27031_27685_-	hypothetical protein	NA	NA	NA	NA
WP_013325535.1\|27729_28026_-	hypothetical protein	NA	NA	NA	NA
WP_157872055.1\|28138_28567_-	hypothetical protein	NA	NA	NA	NA
WP_013325537.1\|28574_28742_-	hypothetical protein	NA	NA	NA	NA
WP_013325538.1\|28755_29151_-	hypothetical protein	NA	NA	NA	NA
WP_013325539.1\|29233_29869_-	hypothetical protein	NA	NA	NA	NA
WP_013325540.1\|29927_30185_-	hypothetical protein	NA	NA	NA	NA
WP_013325541.1\|30197_31079_-	3'-5' exonuclease	NA	NA	NA	NA
WP_013325542.1\|31107_31410_-	hypothetical protein	NA	NA	NA	NA
WP_013325543.1\|31500_32019_-	hypothetical protein	NA	NA	NA	NA
WP_013325544.1\|32073_32796_-	hypothetical protein	NA	NA	NA	NA
WP_013325545.1\|32861_33674_-	hypothetical protein	NA	NA	NA	NA
WP_013325546.1\|33778_34315_-	hypothetical protein	NA	NA	NA	NA
WP_013325547.1\|34314_34728_-	hypothetical protein	NA	NA	NA	NA
WP_013325548.1\|34724_34949_-	hypothetical protein	NA	NA	NA	NA
WP_013325549.1\|35030_35462_-	hypothetical protein	NA	NA	NA	NA
WP_013325550.1\|35551_35968_-	hypothetical protein	NA	NA	NA	NA
WP_041934412.1\|36301_36517_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013325552.1\|36798_39033_+	AAA family ATPase	A0A2H4PAV8	Aphanizomenon_phage	9.2e-20	49.5
WP_013325553.1\|39735_39960_+	hypothetical protein	NA	NA	NA	NA
WP_083786961.1\|40004_40916_-	calcium-binding protein	NA	NA	NA	NA
WP_049802843.1\|40912_41488_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.9e-07	23.9
WP_157872056.1\|41509_41827_-\|transposase	transposase	NA	NA	NA	NA
WP_041934380.1\|41853_42234_-\|transposase	transposase family protein	NA	NA	NA	NA
41865:41882	attL	NA	NA	NA	NA
WP_049802845.1\|42267_42585_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_013325554.1\|42726_43305_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	3.5e-32	40.8
47053:47070	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NC_014533

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_014533_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014533_1

21043-23249

TypeIII-C

Consensus_repeat	Method
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	PILER-CR
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CRISPRCasFinder
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CRT

29 spacers

cmr3gr5,cmr4gr7,cmr5gr11,cas2

The CRISPR arrays of NC_014533_1

>merge|NC_014533|1|21043-23249|PILER-CR,CRISPRCasFinder,CRT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAAGGATTTGGTATCGATTTCTCATGTCCTCAATAGGCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACTCAATTATTTACTTACATTCACTTGTATCTATATTATGACTGAACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACTATATTTTCAGCACCTGGCAATACCTTTAAGTTAGCAGCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAAATCTACTCTAATTTCTGTGGGGATTGGAGTCACTATCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCGATCACCTCGCTGTTCGGGGACTCCGCCAAAGACCTCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAGGTTCGAGAAGCCCTTCTCCTCCATCCAGAGGGCGTAGCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAGGAACTCGGTCGCCCCCAGCTCGTCCCTGATCTCGAACCACCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCCGATGGCGGCATCGTGATGCGGGAGGTCGGCGGGTCGAACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGCTTAATTATAAGCTTTCGAGTCAGGTTAACTTGATATAGACCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGCAGTTTGAACTCCAGTCACCCCAACTACCTGGAATACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGTTGCGCACGGTGACCGGGACCAGCTCGGCGGCCCGTTGCCCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGAGTACCTCTGTTACTATGGCAATTCTTCCTTTTCTCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAAGCATTTTTTCCCTCTACCACCTTAAGAACACCACTTGTGTACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACTATGTCACCCATGCCAATTCACCCTATTATTACTTGTGCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAGGTTCTCCTAGGAATTCATTCTTTTTAAAATTATTTACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCTTTCTGCCTTGCCAGAGTAAAAGTGTGTACTCTTTTTCTCCCTACCTATTGGGTTAAATAGAAATAGTTGGAAACTTTCTGTAATCCTTTCCCCGCCGCCTGTCCAACATCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCGCCGCCGACGTGAACGAACGCGCGATCTTCACGGAGCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCGATCTTTACATTCGCGGTTGAATGACGGCAGAAAAACTCACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACTGGAGGAAATAGACAGCGATGGAAGGCGGTATAAAATTCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACATTGAATCGCTAGAACGCCCTTCCTGTCTCCATTCTCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGTCCTTAAACGACTTAAGGACTTTAGCCAGTTCTTACCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACTTTCGTTTTACTTATTCATACGATATTTGCAACAATATCCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAATAATTAAAACATTTTGATGCTCGTTACAAAGAGCTAACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAACTCCTTCGCGCGCTTTGCCGTGCCGCCCGTCGCCGCGTTCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGCATTCTTAACAAATGCTCTAATTTTCTGCAATCTGATCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAAGTAATCATCTGGCTTTTGATTATGGAATCTCCGCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCGGGGTTTACAAAAAGGTTGGCATTTACCTTGATCCGCCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGGCGCGAGCGACCGAGGACATCGGCCAGCAGATCCGGGCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC

>NC_014533|1|1|21043-22954|PILER-CR
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGGATTTGGTATCGATTTCTCATGTCCTCAATAGG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TCAATTATTTACTTACATTCACTTGTATCTATATTATGACTGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TATATTTTCAGCACCTGGCAATACCTTTAAGTTAGCAG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAATCTACTCTAATTTCTGTGGGGATTGGAGTCACTAT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGATCACCTCGCTGTTCGGGGACTCCGCCAAAGACCTC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGTTCGAGAAGCCCTTCTCCTCCATCCAGAGGGCGTA
GCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGAACTCGGTCGCCCCCAGCTCGTCCCTGATCTCGAACCAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CCGATGGCGGCATCGTGATGCGGGAGGTCGGCGGGTCGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCTTAATTATAAGCTTTCGAGTCAGGTTAACTTGATATAGAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCAGTTTGAACTCCAGTCACCCCAACTACCTGGAATA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GTTGCGCACGGTGACCGGGACCAGCTCGGCGGCCCGTTGCCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GAGTACCTCTGTTACTATGGCAATTCTTCCTTTTCT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGCATTTTTTCCCTCTACCACCTTAAGAACACCACTTGTGTA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TATGTCACCCATGCCAATTCACCCTATTATTACTTGTG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGTTCTCCTAGGAATTCATTCTTTTTAAAATTATTTA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CTTTCTGCCTTGCCAGAGTAAAAGTGTGTACTCTTTTTCT
CCCTACCTATTGGGTTAAATAGAAATAGTTGGAAAC	TTTCTGTAATCCTTTCCCCGCCGCCTGTCCAACATC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGCCGCCGACGTGAACGAACGCGCGATCTTCACGGAG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGATCTTTACATTCGCGGTTGAATGACGGCAGAAAAACTCA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TGGAGGAAATAGACAGCGATGGAAGGCGGTATAAAATT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	ATTGAATCGCTAGAACGCCCTTCCTGTCTCCATTCTC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GTCCTTAAACGACTTAAGGACTTTAGCCAGTTCTTAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TTTCGTTTTACTTATTCATACGATATTTGCAACAATATCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AATAATTAAAACATTTTGATGCTCGTTACAAAGAGCTAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AACTCCTTCGCGCGCTTTGCCGTGCCGCCCGTCGCCGCGTT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC

>NC_014533|1|1|21043-23249|CRISPRCasFinder
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGGATTTGGTATCGATTTCTCATGTCCTCAATAGG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TCAATTATTTACTTACATTCACTTGTATCTATATTATGACTGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TATATTTTCAGCACCTGGCAATACCTTTAAGTTAGCAG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAATCTACTCTAATTTCTGTGGGGATTGGAGTCACTAT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGATCACCTCGCTGTTCGGGGACTCCGCCAAAGACCTC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGTTCGAGAAGCCCTTCTCCTCCATCCAGAGGGCGTA
GCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGAACTCGGTCGCCCCCAGCTCGTCCCTGATCTCGAACCAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CCGATGGCGGCATCGTGATGCGGGAGGTCGGCGGGTCGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCTTAATTATAAGCTTTCGAGTCAGGTTAACTTGATATAGAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCAGTTTGAACTCCAGTCACCCCAACTACCTGGAATA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GTTGCGCACGGTGACCGGGACCAGCTCGGCGGCCCGTTGCCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GAGTACCTCTGTTACTATGGCAATTCTTCCTTTTCT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGCATTTTTTCCCTCTACCACCTTAAGAACACCACTTGTGTA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TATGTCACCCATGCCAATTCACCCTATTATTACTTGTG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGTTCTCCTAGGAATTCATTCTTTTTAAAATTATTTA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CTTTCTGCCTTGCCAGAGTAAAAGTGTGTACTCTTTTTCT
CCCTACCTATTGGGTTAAATAGAAATAGTTGGAAAC	TTTCTGTAATCCTTTCCCCGCCGCCTGTCCAACATC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGCCGCCGACGTGAACGAACGCGCGATCTTCACGGAG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGATCTTTACATTCGCGGTTGAATGACGGCAGAAAAACTCA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TGGAGGAAATAGACAGCGATGGAAGGCGGTATAAAATT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	ATTGAATCGCTAGAACGCCCTTCCTGTCTCCATTCTC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GTCCTTAAACGACTTAAGGACTTTAGCCAGTTCTTAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TTTCGTTTTACTTATTCATACGATATTTGCAACAATATCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AATAATTAAAACATTTTGATGCTCGTTACAAAGAGCTAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AACTCCTTCGCGCGCTTTGCCGTGCCGCCCGTCGCCGCGTT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCATTCTTAACAAATGCTCTAATTTTCTGCAATCTGAT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGTAATCATCTGGCTTTTGATTATGGAATCTCCG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGGGGTTTACAAAAAGGTTGGCATTTACCTTGATCCGCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GGCGCGAGCGACCGAGGACATCGGCCAGCAGATCCGGGC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC

>NC_014533|1|1|21043-23249|CRT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGGATTTGGTATCGATTTCTCATGTCCTCAATAGG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TCAATTATTTACTTACATTCACTTGTATCTATATTATGACTGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TATATTTTCAGCACCTGGCAATACCTTTAAGTTAGCAG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAATCTACTCTAATTTCTGTGGGGATTGGAGTCACTAT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGATCACCTCGCTGTTCGGGGACTCCGCCAAAGACCTC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGTTCGAGAAGCCCTTCTCCTCCATCCAGAGGGCGTA
GCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGAACTCGGTCGCCCCCAGCTCGTCCCTGATCTCGAACCAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CCGATGGCGGCATCGTGATGCGGGAGGTCGGCGGGTCGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCTTAATTATAAGCTTTCGAGTCAGGTTAACTTGATATAGAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCAGTTTGAACTCCAGTCACCCCAACTACCTGGAATA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GTTGCGCACGGTGACCGGGACCAGCTCGGCGGCCCGTTGCCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GAGTACCTCTGTTACTATGGCAATTCTTCCTTTTCT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGCATTTTTTCCCTCTACCACCTTAAGAACACCACTTGTGTA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TATGTCACCCATGCCAATTCACCCTATTATTACTTGTG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AGGTTCTCCTAGGAATTCATTCTTTTTAAAATTATTTA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CTTTCTGCCTTGCCAGAGTAAAAGTGTGTACTCTTTTTCT
CCCTACCTATTGGGTTAAATAGAAATAGTTGGAAAC	TTTCTGTAATCCTTTCCCCGCCGCCTGTCCAACATC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGCCGCCGACGTGAACGAACGCGCGATCTTCACGGAG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGATCTTTACATTCGCGGTTGAATGACGGCAGAAAAACTCA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TGGAGGAAATAGACAGCGATGGAAGGCGGTATAAAATT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	ATTGAATCGCTAGAACGCCCTTCCTGTCTCCATTCTC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GTCCTTAAACGACTTAAGGACTTTAGCCAGTTCTTAC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	TTTCGTTTTACTTATTCATACGATATTTGCAACAATATCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AATAATTAAAACATTTTGATGCTCGTTACAAAGAGCTAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AACTCCTTCGCGCGCTTTGCCGTGCCGCCCGTCGCCGCGTT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GCATTCTTAACAAATGCTCTAATTTTCTGCAATCTGAT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	AAGTAATCATCTGGCTTTTGATTATGGAATCTCCG
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CGGGGTTTACAAAAAGGTTGGCATTTACCTTGATCCGCC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GGCGCGAGCGACCGAGGACATCGGCCAGCAGATCCGGGC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014533.1\|WP_013334237.1\|28345_29131_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_014533.1\|WP_013334239.1\|29550_31191_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213662
NC_014533.1\|WP_013334243.1\|46703_46997_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014533.1\|WP_157871993.1\|3620_6119_-\|response-regulator	unknown	unknown	gnl\|CDD\|237951
NC_014533.1\|WP_157871995.1\|31664_35219_-\|endo-1,3-1,4-beta-glycanase-ExsH	unknown	unknown	gnl\|CDD\|380205
NC_014533.1\|WP_013334235.1\|27320_27647_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334241.1\|42620_43247_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_014533.1\|WP_041934061.1\|25698_26769_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_014533.1\|WP_013334238.1\|29148_29538_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NC_014533.1\|WP_157871994.1\|27705_28026_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334230.1\|12328_13363_-\|response-regulator	unknown	unknown	gnl\|CDD\|381118
NC_014533.1\|WP_013334229.1\|9166_12274_-\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_014533.1\|WP_041934059.1\|2005_2281_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_157871968.1\|18000_20406_+\|hint-domain-containing-protein	unknown	unknown	gnl\|CDD\|368334
NC_014533.1\|WP_013334242.1\|43995_44553_+\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NC_014533.1\|WP_013334227.1\|2356_3595_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|224271
NC_014533.1\|WP_013334231.1\|13873_17791_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187859

Protein	Function_ID	Function_description	E-value
NC_014533.1\|WP_013334237.1\|28345_29131_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.12935e-25
NC_014533.1\|WP_013334239.1\|29550_31191_+\|hypothetical-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	0.0031881
NC_014533.1\|WP_157871993.1\|3620_6119_-\|response-regulator	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	2.62964e-54
NC_014533.1\|WP_157871995.1\|31664_35219_-\|endo-1,3-1,4-beta-glycanase-ExsH	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.31951e-11
NC_014533.1\|WP_013334243.1\|46703_46997_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.9759e-27
NC_014533.1\|WP_013334241.1\|42620_43247_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.13989e-15
NC_014533.1\|WP_041934061.1\|25698_26769_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.08682e-06
NC_014533.1\|WP_013334230.1\|12328_13363_-\|response-regulator	gnl\|CDD\|381118	cd17580, REC_2_DhkD-like, second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal transduction histidine kinase D and similar domains. Dictyostelium discoideum hybrid signal transduction histidine kinase D (DhkD) is a large protein that contains two histidine kinase (HK) and two REC domains on the intracellular side of a single pass transmembrane domain, and extracellular PAS and PAC domains that likely are involved in ligand binding. This model represents the second REC domain and similar domains. DhkD activates the cAMP phosphodiesterase RegA to ensure proper prestalk and prespore patterning, tip formation, and the vertical elongation of the mound into a finger, in Dictyostelium discoideum. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.95416e-40
NC_014533.1\|WP_013334229.1\|9166_12274_-\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.82512e-49
NC_014533.1\|WP_157871968.1\|18000_20406_+\|hint-domain-containing-protein	gnl\|CDD\|368334	pfam05203, Hom_end_hint, Hom_end-associated Hint. Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This Domain corresponds to the latter protein-splicing domain.	2.42262e-11
NC_014533.1\|WP_013334242.1\|43995_44553_+\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	1.26427e-65
NC_014533.1\|WP_013334227.1\|2356_3595_-\|PAS-domain-S-box-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	3.59378e-77
NC_014533.1\|WP_013334231.1\|13873_17791_+\|hypothetical-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	0.00939151

>NC_014533.1|WP_157871968.1|18000_20406_+|hint-domain-containing-protein
MTTYSEYQEKFAQILKNSVLRSLQTFTCSSSVNLNPLINALIDSLPYYGDHDWNTAHKTALANLLAINLPNNSIAPHPDEQGPFYAYYRSTYYYNGSYSGYRDAFFHGISQSGSGEKVAALVEQVNRSLNGAWWGNYAVAVLTDAIKQKVSVSLDTSKLSQDLTNYNNSFKSALSASFLAVFETGYPPTSIAFRAIEATGEMKQASLVLYSAIADGQFTANINQGISTGGDSTNAATWFLFNLWIALKALGYDNVDAAITQYKNHGLKVPIEVDSRSWWTGGYISWYSPLSGADLIAEASATITAAMPEEELTVFSGSPYPATTNVNTPNGYSYSFSNWGSLNRYLPHSSSCFGKGTLVLMADGSAKPIESIQIGDKVLSNLGPRQVVLIEKPLRANRTLYSINNLNLFASSAHPFRGADQCGPMRYAIDPWALIDGIPTMTAKGVGKLEKNIQLLGIRNNQPTAIEVEQINSHPTTDENEIVYDLLLENWEKGYATYYVGGLETYFAVDAETADPLHDLGVTMAIVTAMEMLRPACWEHISEPHLEIPRILSAVNISDLPQLIRKAFRPFFGGKKKQRLSIPKQDFYMRNSEWDAHTSLLEYYLVREYGRWIRSELATGWRTDNALPSMTNHLAIGLFDLELIGDPIMANSEVLIELEVNGVQFMGSNMPHIITLPLQTKPVWNIRFDRIVNMGRVLTTSPSPMLIGRIKLNQKTFSHFRSAIPKNLQSTTRADHFIFNQDGNIIGRICLDYRQLSAKDLHNQTVAAEQWTQKHIMLMAISLGRQLGYKILAQIEAHSVK
>NC_014533.1|WP_013334231.1|13873_17791_+|hypothetical-protein
MVTSINRSRSEFHDLVITRMDAPGNPNYAIPKRVMLIRPNPLDESNDLLFIDQVPVPRDAWTYDAHDKTLRWQGLFGGGQLHLYASGRGAVGVIGGADRAISVRAGARAQFICSVALNSGATYESQNNAIVGFTWDTSSPAWKSATWVQDRLLLTYTVTQGSSIEPPTFTWEFEDKQTESIPWEPSLGSFEASLSLGQQQGLMVWNLVFKSNVPPDQDIGLSSPEPDTVYPYWMQAREDAAASTINGVLQIDDLAPKGTLVGMQGKRVASMVAGYYHVSPDKAPFAVFDGRLHLNGKPVADSYMLGNTLYWRGLDRKHQKRLGLPAEGKLLFSKNGSLANDPHNTLTVRRLSANSTHNQIAKHCDLHPKIHDILLSQVASLADTSPNIYGLLAMTPFAQNTQGEWGDVVQSAVRQNLSEIMNSYISEDIWKLLFPNVNQPILSGELAEIANSPVSGIGDPTAWYKTLGTAVMTQGLANGSDSNTKNLNGPRAAAWLKQEVANSKVYQVHGQKLFQYQWGQRFPQTADYISDQITNAATYEATIDSQIKSSINDINTNVVADGSSPDLKQNLIKEVQAVGEYAKTNKLFWAFAYYTYNTAPAILANIAIQIGINTGSSDGTTLTRLFQQNITVLTALDPSGYFAQQYNKTINIFLATNILPSMYGFTGDAESFELIKEYLQTFVQQNIANEDQQIADAATQIKNILDEKDADEILKASIETLRTFAEAIQDTLALPYIANRWVNWFSSTFPRFSKIANIFGSVFIGGITGLAIFNLFSTYKSWDKLTAGEKAEVILDTVQLGLQILAAVVKRGVRLYAIFQVDGMSFWQRSAAVNRILVEGEASRLDEGLVNISNRTARWLGDTAGSIEMRDEITLLLNIGDNDLEEVSWTIRIFGRNLDEFIATRVGPILILAGIGLSIYFITTGETGVALGADIVNIVGGVLTLFALVGTWAVEGGLIVADGVLAGIIAFAGPLAIIAALVGVALVLYELFQKPPDPVKEFVDQYAKPAGFYVDSKASSIDYVIPYAAKEQNNLLMLGFTLSPDIFIDGIIFIPSGKIMIANADGSLSLGSATSLPDTVWQSQTDGLGMSQIFTLIEKDKTEGPIGVLLSLMSDYTVSFQPRMSSSQTKSQAASGKPTILTQTWLSHPQTHAVTTNDDTDLVSLDLKFQPVMPDQNGNYHPSQAGGWLITTTSGVGYSANQGSLFNLKMSGLAPNFMTMSDISFILNSTPSQQQKFGPRFGINPSTPFTYSLTGGLPSFLSFSKETGTFSPNGQTANQAIKSNNSLTISNALGNESVNFTITVA
>NC_014533.1|WP_013334230.1|12328_13363_-|response-regulator
MSDEKLRQYIETLRQLIAAEEEKQELIAFSESVVALDGLQLYIEEMQTKLEIASCLEQKLIEQNQRIVTAYQHYYDLFHTSPLGYLVTDAKGLITEANQMIAKWLNVPQHYLVGKPLVVYVDHSERSAFYTKLDELSQKREIQHWQTILCPRHQEPFSALLQVLSLRNDSGSIETLRIGVHNLIQIQQAEFLIAQPPYPKAISTKEKVSKLTLSQSLNGLQVLVVDDEADAREFISAVLESAGIRVRAVASAAAALKELEQFQADVLVSDIRMPDKDGYSLIRQIRELESQIGGHIPAVAITAYLDETREKVISAGFEAHLHKLAQPRDLIDMVTQLARRTYSQ
>NC_014533.1|WP_013334229.1|9166_12274_-|response-regulator
MIIPSESLNPLLESLFAGGGEMGALMRAYDWSQSQLGLIETWPQSLKTGIRIILGSRYPMFIWWGKNLINLYNDAYIPILGKRHPKALGRSANDIWSEIWHSLGPLAYEVLNNGNPSWNEELLEIMERNGYREEAYFTFSYSPIGRYEDGVGGIFCACTEDTLRVLDERRLRTLRDLGAETAHAKTVNEACQISANVLANNLKDIPFALFYLLDSGHQQVKLVSTTNLEVGTLVSPSVIELADEASDCWSLNSILATGENRVIHQLIDRFGSLPGGAWDESPNSAIALPLTRPGHETLGVLIAGISPYKPLDDDYRGFFDLVAAQVTTAIANTLAYEDERKRAEALVELDRAKTAFFSNVSHEFRTPLTLMLGPAEDALSDASNPLAPLQYERIKIIHRNGLRLLKLVNTLLDFSRIESERVQAVYEPTDLATFTAELASVFRSCIEKAALRLVVDCPLLAEPVYVDREMWEKIVLNLLSNAFKFTFSGEIKVSLRLVASEQEKLKDKRENFVFTPSSLPIFPYIELSVQDTGIGIPRAEIPHLFERFHRVKGAKGRTYEGSGIGLSLVLQLIKLHSGIVGVSSTLGEGSCFKVFIPSGSAHLPPERIGATPIRTSTAMSVSPYVEEALQWLTQETEFIESSKNQQDKKIILAPSYSHIPSPSKSRILLVDDNADMRHYVSRLLSERWQVETAANGAIALEMIAQQLPDLVLTDVMMPELDGFGLLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQLQMSRLRQEQSANRFKNEFLQTVTHELQAPLAAILSWARLLQSQSFDGKKTAQALASIERNATIEAKLVKDLLDVSSILSGKLRLQLQPVDLVPLTQDVITTLRQTAQAKQILLIERLPDPGKQVILTGDPERLKQIMSHLLSNAIKFTPNKGKVYIELDDLAFEARLRVTDTGIGISSNFLVHVFERFSQAEVPSRHSPGGVGIGLAIARYLVELHQGTIEVASGGEGRGATFTVRLPLINSTQLNSDAPVEKE
>NC_014533.1|WP_157871993.1|3620_6119_-|response-regulator
MEEIAERTWSALERARTEAALRESEEKYRSLFESINDGFALLEVLYDDDDKPLDCRFLEVSPSFETQTGLTQVQGKTLRELIPSVESGWFEHYHQALVTNALVHFEMWQDYLKTWFEVDVFPYGNPQDRKVTIVFQNINEHKQAEAERLQLIQEQAAREQERQRAETLAELDRVKTLFFSNVSHEFRTPLTLSLAPLQDILSDPTHPLDPVQGERLELVHRNNLRLLKLVNTLLDFSRIEAGRIEAVYEPTDLAMFTTELTSVFRSAIERADLQLIVDCPPLPEPVFVDRQMWEKIVLNLLSNAFKFTFKGEIRVSLANNNDNCAILQIQDTGTGIAPEHLPHLFERFYQVRGIQARTHEGSGIGLALVYELVRLHSGSIEVNSTLGEGTCFTISLPFGTEHLPSDRLLDESDDQPVRPLASTTIDSVAYRLEAERWLPKDTNEEQDLECSQEVSLTPSSFLVLLVDDNADMRKYLTRILSEHFQVEAVADGKTALAVAIEQVPDLILSDVMMPRLDGVELLQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHLQMAKLRGEALDHERMISRRKDELLSTVSHELNTPLVAILGWTRLLRGTPPSQPMLTKALETIERNAALQAKLIQDLLDISRINADKLLLSLEPVEIGSLIDIAISTVAPLASTKGIDLIWHKTNEDGDASSVVVKGDPERLVQVMGNLLTNAIKFTPPSGRVSVELSVMRDDNFADGGYAKISVIDTGIGIAAEFLPYVFERFRQGEGTNGVKGLGLGLAISRHLIQLHQGSIYVQSQGIGKGATFVIELPINQK
>NC_014533.1|WP_013334227.1|2356_3595_-|PAS-domain-S-box-protein
MNPPEVNLEFEALLNYLKDSRGCDLTAYKRSTLIRRFQYRMQSINIDNYQNYLQYLQQHPQEYSALLDDVLINFTSFFRDPEAWDYLAKAIIPKILKSKHTDEPIRVWSAGCAAGQEIYSLTILLAEVLGTDECLKRVQVYATDIDEVALTQAREGIYSEQQMIGLSANLIEKYFKPIEGNYVFDRTLRHKIIFGKHDLAKNAPISKIDLLVCRNVLMYFYSETQSSILVRFHFALKNTGFLLLGQTDILTQHREIFTPINLKLRIYAKGLNLEVEHVLSLNPKSSKKPTLARFTTDQSFWKTIFETSPVAQLCVDFKGYLIAANERANILFGLTLDDLNRSFLELEPGKLLDSHASGKSLYHKRRRATLKNIEWRTSSSTRHFDVESVPLFNSEKKFLGITLTFFEKSLSK
>NC_014533.1|WP_041934059.1|2005_2281_+|hypothetical-protein
MVSNLGRLNIPVQYGHLRLEAMYGPSIISHFKNNHLVGVITLGDQLFFNFVYSKLEIKKAQAEQVQKEAMKLLLATNKVKTLAKYLEINKA
>NC_014533.1|WP_041934061.1|25698_26769_+|CRISPR-associated-protein-Cmr3
MFSYLIMIEPLGFLYGSSGRFLSPENLVGRSGTNFPPSAATFSGLFAAEYGNDAIQNLLVAGPFWGNTEKVGSEQNFYVPTPLTYLVSDGKIGPKLTWDSKKEGWFYDGKAPNDKFDQGTWIAITDWQNPTNVINPYNDNKKAWKFCPHLHPKLEKDQRIVIQQSDEDEQREGSLFLENAVQLNPDNCLVYLANRELESGWYRFGGEGHIVEVKCFELNEKIKELFQQKIETKFAIITPAVWGSNRLSYREPIYLQKGDKEKYKKSDPDSANQTVWELETLYTSRPIPFRYRLGDHEHQQKDGPKCLSRGRYAVPAGTVYVLKKALNKTWYEWDEEWFPKEGPSFKRWGCGLALPI
>NC_014533.1|WP_013334235.1|27320_27647_+|hypothetical-protein
MSVKELLNLKKPQDYPSKEAYKQDVLKAVELLIRLGINESGSADLKSSIESVTQKLQEDEEQIHGKKRSKQEILEDLKQVNSEITELDLEIADLERQIAIKKAKKAIE
>NC_014533.1|WP_157871994.1|27705_28026_-|hypothetical-protein
MVIRREEAIRRRRELEELRRQLDYERISYDTPEQLDELAELADTTVQTPSFKERFCRLYNQRITGTISDIGELVVEIAFASNIPVLLGALIIIKFLRLRLDDYCGD
>NC_014533.1|WP_013334237.1|28345_29131_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYHKAYGIIETLAPLHVGATAGEESGNLNLIFRDQFTQTGIIPGSSIRGRFRSETYLEQGEEAANDWYGNESETTESKVKFEYASIVWLPVFCPGQPVVWVSCPRLLKRYQRITGVNATIPELYTGSQTLQALTVEGKSMLFFNFGFLSVEKTEDFTPWFPDGEQLAAVVVGDDEIAMIHDMALYRQSRVRLEKDQKKVDTGGFFNTEALPEGTILIFAIAFKNQEDAEKWQPFNAKNSNEMYLGGLESIGFGHCKISLNL
>NC_014533.1|WP_013334238.1|29148_29538_+|hypothetical-protein
MAWEPYNIDRKAHDLVLNYRDKGNVIKESHKMRVTVAYGLERFWGEQFRLRKIDENKAAYWQATWQTLAEIMQQAGVNLPNDKLSPEDTTAIKTMTEKLWNFNPQQRKVVLAILTNLCDSLVWWTQRYK
>NC_014533.1|WP_013334239.1|29550_31191_+|hypothetical-protein
MVNINQIPLMFRAQIEGRCQIQRLIPKQETQEAYHWVDQWVEGVEEEIPDFSSNIQTKEYQMTWRFVSNGGQDEGVIRPVIGAKGFPFYPGSSMKGAFLRACTEEEALKYCGGKKGNEINPGILRFHGGYPNSLEWIEEELVDIVHPQQDWQVKTNANHSAFIQISLHQPTLVFGISSTRTLEVQEWEKIWKIWEAALGKGIGCRVSAGYGQPKNHTANSLLSIHLQGKGLASQSIKKGNNEVKGEFRANLFKAALRGHTLRLLGGVTDEKTAERLTQELWGGIGGTSGATIGQLGISFEVKQLSLDKFTYTPSRYPVSFPTYKVKGRLDLLCLQNLSEKKQENLTRFVTDLIQFSLLLGGFGKSWRRVDHELFFPEYLKNGNKPMIGCHWQFIEQSRKLYIPVNQLEDIKRFLEGIYQSMQGWVKYKKANLNLLGCNWREAFHPNRVQVWGRIANSQDDSEAIYWFHQAYRSNQTIKQTELTGKLNKIGRIWHRMYPRSILVERGRKYTSEYVELLTIFPDDSQNTRDFILFLQESSSFEKLWGN
>NC_014533.1|WP_157871995.1|31664_35219_-|endo-1,3-1,4-beta-glycanase-ExsH
MAGINLPNVPDLGEWQIDLRLNGTTLAKDSFTVVETNDSLPVITLAVNPSSVTEDGTTNLVYTFSRTGLMTNSLTVNYTVGGIAVFNSDYTSSGAASFGVGLGTVTFAPGASTATVIIDPIPDQAIETNETVALTLSSSVNYLIGTTTAVIGTINNDDNALPSITLAVNPTSVNEDGTTNLIYTFTRTGSTANALTVNFGVGGTATWNSDYTSSGAASFTSTSGTVTFAANSSTATVTIDPTSDTTIETNETVALTLSSSANYTVGTTSAVTGTILNDDVSLPNITLTVNPTSVNEDGTTNLIYTFTRTGSTANALTVNFGVGGSATFNSDYTSSGAASFTSTSGTVTFAANSSTATVTIDPTSDTTIETNETVALTLSSSANYTVGTTSAVTGTIINDDVSLPNITLTVNPTSVNEDGTTTLIYTFTRTGSTANALSVNFGVGGSATFNSDYTSSGAASFTSTSGTVTFAANSSTATLTIDPTSDTTIETNETVALTLSSSANYTVGTTSAVTGTIINDDVLPTITLAVSPTSVNEDGTTNLIYTFTRTGSTEGALSVNFGVGGSATFNNDYTSSGAASFSATTGSITFAANNNQASLTLNPTGDTTVESHETVSITLLDNTAYIKGTTAAVIATINNDDGDNNNNELIGGPGADNLDGQLGNDTMIGGDGNDTYTVDSSGDLIVENPNAGTDTVKTYLSYILGENLENLTLLGISNLNATGNNLNNSLTGNNGNNILTDSQGNDTLDGKGGDDTLIGGVGNDVYVVDSIHDVIIENTDEGIDSVNASVSYTLSANLEKLTLTGTGNINGVGNNLNNTLTGNSGNNTLIGYEGNDSLDGKGGNDTLIGGLENDVYIVDSIDDVITENSAEGTDSVNASVSYTLSANLEKLTLTGTGNLEGIGNSLDNTLTGNSGNNTLKGNEGNDSLDGKAGSDTLVGGSGNDVYTVDHINDVITENLAEGTDSVNASVSFTLGDNLENLTLTGSSNLTGTGNSSNNTLTGNTGANILSAGGGNDSVNGGNGDDTLYGGEGNNTLVGGAGNDVFEGGNGDDRLTGGAGSDSFTGGGGVNTFVINPLTDSLLANFDRIGDLKIGVDFIDGSSAVGAVSVMKLGEVTQLSEVAIASVFNSTNFVKNGAAIFTFVEGSTTRTFLALNDSTAGFSASTDAIIEITGYTGELSNLAII
>NC_014533.1|WP_013334241.1|42620_43247_-|class-I-SAM-dependent-methyltransferase
MKPFRPVKLYLITGISFISLALALDRGQWVLKTLTPIFVEPSLAQVIYKDAPYLPSSNVVVQEMLRIAQVTSSDVVYDLGSGDGRIVISAAKNYGAKGVGIDIDPKLIQEAKANAREAGVSDRVKFIEQDFFKADLSEATVVTLYLLSDANLKLRPKLLQELKPGTRIVSHAFNMGTWKPEQVVTVTGGSKIYYWIVPEQIPQDLLSN
>NC_014533.1|WP_013334242.1|43995_44553_+|HPP-family-protein
MINDKKFQLKWKSYWFKTLGRWRSCSLTCPIDRPPNRHIFWSWIGSFLAITATSYLAVKTNSPLLMAPFGATSVLIFGVPHSPLAQPRNVIGGNCLAALASLIILHFFGSSPWAMGMAVSAAIAIMQITGTLHPPSGAVALVVMMTKPDWEFLLTPAFEGSIIMVLCAVIFNNLAEERTYPNHWL
>NC_014533.1|WP_013334243.1|46703_46997_-|CRISPR-associated-endonuclease-Cas2
MSQLFYLIIYDLADSKAANKRRKRLHSLLCGFGKWTQYSVFECFLTKMQFVKLQHQIEDLIKPDEDSVRIYILDAGAVQKTITYGSQKPRQEEVIIL

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Crispr_ID: NC_014533_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014533_2

44680-46461

TypeI-D

V-U2

Consensus_repeat	Method
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CRT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	PILER-CR
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CRISPRCasFinder

24 spacers

cmr5gr11,cmr4gr7,cmr3gr5,cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL

The CRISPR arrays of NC_014533_2

>merge|NC_014533|2|44680-46461|CRT,PILER-CR,CRISPRCasFinder
TGTGTAGAGATCTTTATTTATGAATTTTAATAGAAAGTGAATTCTTGTTGTGTTCTGTTGGAGATATTAAAGAAAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTAGAAAGGGCTTTGTTAAGGCTTGAAAAAATAGAAAATTTTTGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGAACGGCAAACTTAAAACTGTTGTTGACAACAATGAGTGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGAGTCGATATTGAAACAAATATCAATCGATTAGCGTTGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCCTAATTATCCTGGCAAAATGGACGGAAGTCTTAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTTTCCATTAACCGTCCTCGATGGGAAGAACTTTATGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGGTATCGTCCTTTGTTTTAACATTTAACTTATAGCGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTGTTGCATCTTATCTGGTTCCGTTGGTTTGTTTTGTGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGACAATAAGAATTCAGATAATTCAGCGAAATATCTATGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGGAAGGATCAATAGGACTACCAACATTAAATTTAGAAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCTATAGGAGGATCAGGTGTTAAAACAAAAATTCTCGGGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTTTGACTCTTCTTCTTTGTCTTGACAAATATATTTGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCCGGACATTGACTATAAGGTAACACAATTATTATGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCGCTCATAGCTCAAAATTCGTAAGAACAGTTTCGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCATCAATTATAAACAAATGATAGACGATTACTTATGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTACCTATTTCTAGTTTAGATATCAAGTTGTTAACAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGATAGATGAATTAATACTACGTGACAGTATTCCGTTAAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGACAAATCCGCAGCATAACTACACCATTTTGTTAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCCCCGCGAAATGGGGCTAAAAAAGCCTCTAAAGGGTCGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTGGCAATCCAAATTCAGGACCATTTGAAGCTGGAGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTAAACGATTGTGTTCTAGTTTCAACGGATACAATGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGCCTGATCCTCCTATAGAATGGCTAAGATGTAAATTGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTAACATCTAGTAATAAAAGTGGCGTTAATTTATTAGGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAGTTGCAAGTTTGTGTTGTAAACGATTGCACAGTAACATCGTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG

>NC_014533|2|2|44680-46461|CRT
TGTGTAGAGATCTTTATTTATGAATTTTAATAGAAAG	TGAATTCTTGTTGTGTTCTGTTGGAGATATTAAAGAAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAGAAAGGGCTTTGTTAAGGCTTGAAAAAATAGAAAATTTTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	AACGGCAAACTTAAAACTGTTGTTGACAACAATGAGT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	AGTCGATATTGAAACAAATATCAATCGATTAGCGTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCTAATTATCCTGGCAAAATGGACGGAAGTCTTA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTTCCATTAACCGTCCTCGATGGGAAGAACTTTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	GTATCGTCCTTTGTTTTAACATTTAACTTATAGC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TGTTGCATCTTATCTGGTTCCGTTGGTTTGTTTTGT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ACAATAAGAATTCAGATAATTCAGCGAAATATCTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	GAAGGATCAATAGGACTACCAACATTAAATTTAGAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CTATAGGAGGATCAGGTGTTAAAACAAAAATTCTCGG
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTTGACTCTTCTTCTTTGTCTTGACAAATATATTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCGGACATTGACTATAAGGTAACACAATTATTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CGCTCATAGCTCAAAATTCGTAAGAACAGTTTC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CATCAATTATAAACAAATGATAGACGATTACTTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TACCTATTTCTAGTTTAGATATCAAGTTGTTAACA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ATAGATGAATTAATACTACGTGACAGTATTCCGTTAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ACAAATCCGCAGCATAACTACACCATTTTGTTA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCCCGCGAAATGGGGCTAAAAAAGCCTCTAAAGGGTC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TGGCAATCCAAATTCAGGACCATTTGAAGCTGGA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAAACGATTGTGTTCTAGTTTCAACGGATACAAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCTGATCCTCCTATAGAATGGCTAAGATGTAAATT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAACATCTAGTAATAAAAGTGGCGTTAATTTATTAG
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTGCAAGTTTGTGTTGTAAACGATTGCACAGTAACATC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG

>NC_014533|2|2|44755-46461|PILER-CR
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAGAAAGGGCTTTGTTAAGGCTTGAAAAAATAGAAAATTTTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	AACGGCAAACTTAAAACTGTTGTTGACAACAATGAGT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	AGTCGATATTGAAACAAATATCAATCGATTAGCGTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCTAATTATCCTGGCAAAATGGACGGAAGTCTTA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTTCCATTAACCGTCCTCGATGGGAAGAACTTTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	GTATCGTCCTTTGTTTTAACATTTAACTTATAGC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TGTTGCATCTTATCTGGTTCCGTTGGTTTGTTTTGT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ACAATAAGAATTCAGATAATTCAGCGAAATATCTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	GAAGGATCAATAGGACTACCAACATTAAATTTAGAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CTATAGGAGGATCAGGTGTTAAAACAAAAATTCTCGG
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTTGACTCTTCTTCTTTGTCTTGACAAATATATTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCGGACATTGACTATAAGGTAACACAATTATTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CGCTCATAGCTCAAAATTCGTAAGAACAGTTTC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CATCAATTATAAACAAATGATAGACGATTACTTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TACCTATTTCTAGTTTAGATATCAAGTTGTTAACA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ATAGATGAATTAATACTACGTGACAGTATTCCGTTAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ACAAATCCGCAGCATAACTACACCATTTTGTTA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCCCGCGAAATGGGGCTAAAAAAGCCTCTAAAGGGTC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TGGCAATCCAAATTCAGGACCATTTGAAGCTGGA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAAACGATTGTGTTCTAGTTTCAACGGATACAAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCTGATCCTCCTATAGAATGGCTAAGATGTAAATT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAACATCTAGTAATAAAAGTGGCGTTAATTTATTAG
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTGCAAGTTTGTGTTGTAAACGATTGCACAGTAACATC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG

>NC_014533|2|2|44755-46461|CRISPRCasFinder
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAGAAAGGGCTTTGTTAAGGCTTGAAAAAATAGAAAATTTTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	AACGGCAAACTTAAAACTGTTGTTGACAACAATGAGT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	AGTCGATATTGAAACAAATATCAATCGATTAGCGTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCTAATTATCCTGGCAAAATGGACGGAAGTCTTA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTTCCATTAACCGTCCTCGATGGGAAGAACTTTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	GTATCGTCCTTTGTTTTAACATTTAACTTATAGC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TGTTGCATCTTATCTGGTTCCGTTGGTTTGTTTTGT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ACAATAAGAATTCAGATAATTCAGCGAAATATCTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	GAAGGATCAATAGGACTACCAACATTAAATTTAGAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CTATAGGAGGATCAGGTGTTAAAACAAAAATTCTCGG
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTTGACTCTTCTTCTTTGTCTTGACAAATATATTT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCGGACATTGACTATAAGGTAACACAATTATTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CGCTCATAGCTCAAAATTCGTAAGAACAGTTTC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CATCAATTATAAACAAATGATAGACGATTACTTAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TACCTATTTCTAGTTTAGATATCAAGTTGTTAACA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ATAGATGAATTAATACTACGTGACAGTATTCCGTTAA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	ACAAATCCGCAGCATAACTACACCATTTTGTTA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCCCGCGAAATGGGGCTAAAAAAGCCTCTAAAGGGTC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TGGCAATCCAAATTCAGGACCATTTGAAGCTGGA
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAAACGATTGTGTTCTAGTTTCAACGGATACAAT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	CCTGATCCTCCTATAGAATGGCTAAGATGTAAATT
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TAACATCTAGTAATAAAAGTGGCGTTAATTTATTAG
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG	TTGCAAGTTTGTGTTGTAAACGATTGCACAGTAACATC
GTTTCAATCCCGTTTCCAGGATTCATTTAATAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014533.1\|WP_013334239.1\|29550_31191_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213662
NC_014533.1\|WP_013334237.1\|28345_29131_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_014533.1\|WP_013334248.1\|50264_51257_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_014533.1\|WP_157871995.1\|31664_35219_-\|endo-1,3-1,4-beta-glycanase-ExsH	unknown	unknown	gnl\|CDD\|380205
NC_014533.1\|WP_013334235.1\|27320_27647_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334241.1\|42620_43247_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_014533.1\|WP_013334250.1\|54274_56413_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_014533.1\|WP_041934061.1\|25698_26769_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_014533.1\|WP_157871968.1\|18000_20406_+\|hint-domain-containing-protein	unknown	unknown	gnl\|CDD\|368334
NC_014533.1\|WP_013334245.1\|48013_48616_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_014533.1\|WP_157871994.1\|27705_28026_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334252.1\|58271_59369_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238514
NC_014533.1\|WP_013334246.1\|48618_49446_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|187783
NC_014533.1\|WP_013334243.1\|46703_46997_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014533.1\|WP_013334249.1\|51316_54232_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|187843
NC_014533.1\|WP_013334238.1\|29148_29538_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NC_014533.1\|WP_013334251.1\|56962_57910_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_014533.1\|WP_013334242.1\|43995_44553_+\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NC_014533.1\|WP_013334244.1\|46993_47971_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_014533.1\|WP_013334247.1\|49417_50197_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_014533.1\|WP_013334237.1\|28345_29131_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	1.3e-28	95.0	0.0
NC_014533.1\|WP_013334244.1\|46993_47971_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	2.6e-105	346.7	0.1
NC_014533.1\|WP_013334248.1\|50264_51257_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	6.1e-72	237.0	0.0
NC_014533.1\|WP_013334247.1\|49417_50197_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	1.6e-61	202.2	2.6
NC_014533.1\|WP_013334250.1\|54274_56413_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	4.2e-59	195.0	0.1
NC_014533.1\|WP_041934061.1\|25698_26769_+\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	4.2e-19	64.1	0.6
NC_014533.1\|WP_013334245.1\|48013_48616_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	2.6e-37	123.4	0.2
NC_014533.1\|WP_013334243.1\|46703_46997_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	7.3e-26	85.0	0.1
NC_014533.1\|WP_013334249.1\|51316_54232_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	6.3e-214	707.3	0.1
NC_014533.1\|WP_013334238.1\|29148_29538_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	1.4e-63	207.2	4.3
NC_014533.1\|WP_013334251.1\|56962_57910_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	1.7e-20	68.5	2.4
NC_014533.1\|WP_013334246.1\|48618_49446_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	1.6e-22	75.1	0.0

Protein	Function_ID	Function_description	E-value
NC_014533.1\|WP_013334239.1\|29550_31191_+\|hypothetical-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	0.0031881
NC_014533.1\|WP_013334237.1\|28345_29131_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.12935e-25
NC_014533.1\|WP_013334248.1\|50264_51257_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	0
NC_014533.1\|WP_157871995.1\|31664_35219_-\|endo-1,3-1,4-beta-glycanase-ExsH	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.31951e-11
NC_014533.1\|WP_013334241.1\|42620_43247_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.13989e-15
NC_014533.1\|WP_013334250.1\|54274_56413_-\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	2.72261e-51
NC_014533.1\|WP_041934061.1\|25698_26769_+\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.08682e-06
NC_014533.1\|WP_157871968.1\|18000_20406_+\|hint-domain-containing-protein	gnl\|CDD\|368334	pfam05203, Hom_end_hint, Hom_end-associated Hint. Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This Domain corresponds to the latter protein-splicing domain.	2.42262e-11
NC_014533.1\|WP_013334245.1\|48013_48616_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.31399e-34
NC_014533.1\|WP_013334252.1\|58271_59369_-\|M24-family-metallopeptidase	gnl\|CDD\|238514	cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.	4.13082e-30
NC_014533.1\|WP_013334243.1\|46703_46997_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.9759e-27
NC_014533.1\|WP_013334249.1\|51316_54232_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|187843	cd09712, Cas10d_I-D, CRISPR/Cas system-associated protein Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain. Fused to N-terminal HD domain; signature gene for I-D subtype; also known as Csc3 family.	0
NC_014533.1\|WP_013334242.1\|43995_44553_+\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	1.26427e-65
NC_014533.1\|WP_013334251.1\|56962_57910_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	5.55015e-19
NC_014533.1\|WP_013334246.1\|48618_49446_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	2.14925e-12
NC_014533.1\|WP_013334244.1\|46993_47971_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.50109e-146
NC_014533.1\|WP_013334247.1\|49417_50197_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	1.30216e-62

>NC_014533.1|WP_013334242.1|43995_44553_+|HPP-family-protein
MINDKKFQLKWKSYWFKTLGRWRSCSLTCPIDRPPNRHIFWSWIGSFLAITATSYLAVKTNSPLLMAPFGATSVLIFGVPHSPLAQPRNVIGGNCLAALASLIILHFFGSSPWAMGMAVSAAIAIMQITGTLHPPSGAVALVVMMTKPDWEFLLTPAFEGSIIMVLCAVIFNNLAEERTYPNHWL
>NC_014533.1|WP_013334241.1|42620_43247_-|class-I-SAM-dependent-methyltransferase
MKPFRPVKLYLITGISFISLALALDRGQWVLKTLTPIFVEPSLAQVIYKDAPYLPSSNVVVQEMLRIAQVTSSDVVYDLGSGDGRIVISAAKNYGAKGVGIDIDPKLIQEAKANAREAGVSDRVKFIEQDFFKADLSEATVVTLYLLSDANLKLRPKLLQELKPGTRIVSHAFNMGTWKPEQVVTVTGGSKIYYWIVPEQIPQDLLSN
>NC_014533.1|WP_157871995.1|31664_35219_-|endo-1,3-1,4-beta-glycanase-ExsH
MAGINLPNVPDLGEWQIDLRLNGTTLAKDSFTVVETNDSLPVITLAVNPSSVTEDGTTNLVYTFSRTGLMTNSLTVNYTVGGIAVFNSDYTSSGAASFGVGLGTVTFAPGASTATVIIDPIPDQAIETNETVALTLSSSVNYLIGTTTAVIGTINNDDNALPSITLAVNPTSVNEDGTTNLIYTFTRTGSTANALTVNFGVGGTATWNSDYTSSGAASFTSTSGTVTFAANSSTATVTIDPTSDTTIETNETVALTLSSSANYTVGTTSAVTGTILNDDVSLPNITLTVNPTSVNEDGTTNLIYTFTRTGSTANALTVNFGVGGSATFNSDYTSSGAASFTSTSGTVTFAANSSTATVTIDPTSDTTIETNETVALTLSSSANYTVGTTSAVTGTIINDDVSLPNITLTVNPTSVNEDGTTTLIYTFTRTGSTANALSVNFGVGGSATFNSDYTSSGAASFTSTSGTVTFAANSSTATLTIDPTSDTTIETNETVALTLSSSANYTVGTTSAVTGTIINDDVLPTITLAVSPTSVNEDGTTNLIYTFTRTGSTEGALSVNFGVGGSATFNNDYTSSGAASFSATTGSITFAANNNQASLTLNPTGDTTVESHETVSITLLDNTAYIKGTTAAVIATINNDDGDNNNNELIGGPGADNLDGQLGNDTMIGGDGNDTYTVDSSGDLIVENPNAGTDTVKTYLSYILGENLENLTLLGISNLNATGNNLNNSLTGNNGNNILTDSQGNDTLDGKGGDDTLIGGVGNDVYVVDSIHDVIIENTDEGIDSVNASVSYTLSANLEKLTLTGTGNINGVGNNLNNTLTGNSGNNTLIGYEGNDSLDGKGGNDTLIGGLENDVYIVDSIDDVITENSAEGTDSVNASVSYTLSANLEKLTLTGTGNLEGIGNSLDNTLTGNSGNNTLKGNEGNDSLDGKAGSDTLVGGSGNDVYTVDHINDVITENLAEGTDSVNASVSFTLGDNLENLTLTGSSNLTGTGNSSNNTLTGNTGANILSAGGGNDSVNGGNGDDTLYGGEGNNTLVGGAGNDVFEGGNGDDRLTGGAGSDSFTGGGGVNTFVINPLTDSLLANFDRIGDLKIGVDFIDGSSAVGAVSVMKLGEVTQLSEVAIASVFNSTNFVKNGAAIFTFVEGSTTRTFLALNDSTAGFSASTDAIIEITGYTGELSNLAII
>NC_014533.1|WP_013334239.1|29550_31191_+|hypothetical-protein
MVNINQIPLMFRAQIEGRCQIQRLIPKQETQEAYHWVDQWVEGVEEEIPDFSSNIQTKEYQMTWRFVSNGGQDEGVIRPVIGAKGFPFYPGSSMKGAFLRACTEEEALKYCGGKKGNEINPGILRFHGGYPNSLEWIEEELVDIVHPQQDWQVKTNANHSAFIQISLHQPTLVFGISSTRTLEVQEWEKIWKIWEAALGKGIGCRVSAGYGQPKNHTANSLLSIHLQGKGLASQSIKKGNNEVKGEFRANLFKAALRGHTLRLLGGVTDEKTAERLTQELWGGIGGTSGATIGQLGISFEVKQLSLDKFTYTPSRYPVSFPTYKVKGRLDLLCLQNLSEKKQENLTRFVTDLIQFSLLLGGFGKSWRRVDHELFFPEYLKNGNKPMIGCHWQFIEQSRKLYIPVNQLEDIKRFLEGIYQSMQGWVKYKKANLNLLGCNWREAFHPNRVQVWGRIANSQDDSEAIYWFHQAYRSNQTIKQTELTGKLNKIGRIWHRMYPRSILVERGRKYTSEYVELLTIFPDDSQNTRDFILFLQESSSFEKLWGN
>NC_014533.1|WP_013334238.1|29148_29538_+|hypothetical-protein
MAWEPYNIDRKAHDLVLNYRDKGNVIKESHKMRVTVAYGLERFWGEQFRLRKIDENKAAYWQATWQTLAEIMQQAGVNLPNDKLSPEDTTAIKTMTEKLWNFNPQQRKVVLAILTNLCDSLVWWTQRYK
>NC_014533.1|WP_013334237.1|28345_29131_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYHKAYGIIETLAPLHVGATAGEESGNLNLIFRDQFTQTGIIPGSSIRGRFRSETYLEQGEEAANDWYGNESETTESKVKFEYASIVWLPVFCPGQPVVWVSCPRLLKRYQRITGVNATIPELYTGSQTLQALTVEGKSMLFFNFGFLSVEKTEDFTPWFPDGEQLAAVVVGDDEIAMIHDMALYRQSRVRLEKDQKKVDTGGFFNTEALPEGTILIFAIAFKNQEDAEKWQPFNAKNSNEMYLGGLESIGFGHCKISLNL
>NC_014533.1|WP_157871994.1|27705_28026_-|hypothetical-protein
MVIRREEAIRRRRELEELRRQLDYERISYDTPEQLDELAELADTTVQTPSFKERFCRLYNQRITGTISDIGELVVEIAFASNIPVLLGALIIIKFLRLRLDDYCGD
>NC_014533.1|WP_013334235.1|27320_27647_+|hypothetical-protein
MSVKELLNLKKPQDYPSKEAYKQDVLKAVELLIRLGINESGSADLKSSIESVTQKLQEDEEQIHGKKRSKQEILEDLKQVNSEITELDLEIADLERQIAIKKAKKAIE
>NC_014533.1|WP_041934061.1|25698_26769_+|CRISPR-associated-protein-Cmr3
MFSYLIMIEPLGFLYGSSGRFLSPENLVGRSGTNFPPSAATFSGLFAAEYGNDAIQNLLVAGPFWGNTEKVGSEQNFYVPTPLTYLVSDGKIGPKLTWDSKKEGWFYDGKAPNDKFDQGTWIAITDWQNPTNVINPYNDNKKAWKFCPHLHPKLEKDQRIVIQQSDEDEQREGSLFLENAVQLNPDNCLVYLANRELESGWYRFGGEGHIVEVKCFELNEKIKELFQQKIETKFAIITPAVWGSNRLSYREPIYLQKGDKEKYKKSDPDSANQTVWELETLYTSRPIPFRYRLGDHEHQQKDGPKCLSRGRYAVPAGTVYVLKKALNKTWYEWDEEWFPKEGPSFKRWGCGLALPI
>NC_014533.1|WP_157871968.1|18000_20406_+|hint-domain-containing-protein
MTTYSEYQEKFAQILKNSVLRSLQTFTCSSSVNLNPLINALIDSLPYYGDHDWNTAHKTALANLLAINLPNNSIAPHPDEQGPFYAYYRSTYYYNGSYSGYRDAFFHGISQSGSGEKVAALVEQVNRSLNGAWWGNYAVAVLTDAIKQKVSVSLDTSKLSQDLTNYNNSFKSALSASFLAVFETGYPPTSIAFRAIEATGEMKQASLVLYSAIADGQFTANINQGISTGGDSTNAATWFLFNLWIALKALGYDNVDAAITQYKNHGLKVPIEVDSRSWWTGGYISWYSPLSGADLIAEASATITAAMPEEELTVFSGSPYPATTNVNTPNGYSYSFSNWGSLNRYLPHSSSCFGKGTLVLMADGSAKPIESIQIGDKVLSNLGPRQVVLIEKPLRANRTLYSINNLNLFASSAHPFRGADQCGPMRYAIDPWALIDGIPTMTAKGVGKLEKNIQLLGIRNNQPTAIEVEQINSHPTTDENEIVYDLLLENWEKGYATYYVGGLETYFAVDAETADPLHDLGVTMAIVTAMEMLRPACWEHISEPHLEIPRILSAVNISDLPQLIRKAFRPFFGGKKKQRLSIPKQDFYMRNSEWDAHTSLLEYYLVREYGRWIRSELATGWRTDNALPSMTNHLAIGLFDLELIGDPIMANSEVLIELEVNGVQFMGSNMPHIITLPLQTKPVWNIRFDRIVNMGRVLTTSPSPMLIGRIKLNQKTFSHFRSAIPKNLQSTTRADHFIFNQDGNIIGRICLDYRQLSAKDLHNQTVAAEQWTQKHIMLMAISLGRQLGYKILAQIEAHSVK
>NC_014533.1|WP_013334243.1|46703_46997_-|CRISPR-associated-endonuclease-Cas2
MSQLFYLIIYDLADSKAANKRRKRLHSLLCGFGKWTQYSVFECFLTKMQFVKLQHQIEDLIKPDEDSVRIYILDAGAVQKTITYGSQKPRQEEVIIL
>NC_014533.1|WP_013334244.1|46993_47971_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MSILYLTQPEGILSKKLEAFNVALKQEDGSWQKESVAAQTVEQIVLMGQQSITGEALSYALELGISVHYLSIFGKYLGSALPGYSRNGQLRLAQYAVHNNPEKRLALVKTIVSGKIQNQYLILYRYGQRENLLKLRKQSVKNQETLDQVRGVEGIAAREYFQGLSIILDEEWQFTGRNRRPPRDPVNALLSFAYGLLRVQVMAAVHLAGLDPYIGYLHETTRGQPAMVLDLMEEFRPLIADRLVLSVISHKEIKPADFQESLGAYNLSDSGRKTFLQAFERKMTSEFKHPVFGYQCTYRRAVELQARLLSRHLQEEVPYQPLCIK
>NC_014533.1|WP_013334245.1|48013_48616_-|CRISPR-associated-protein-Cas4
MNDNYLPLSYLNAWEYCPRRFYWEYVLGEMADNEHIIIGRHLHRNINQEGVSKEGDILLHRQQWVWSDRLQIKGIIDLVEEREAALIPVEYKKGRMSRHLNDHFQLCAGAICLEEQRNISINYGDIFYHANRRRQRVNFTDQLRQVTEEAIYQAHQAVNDKMPLPIAHSQKCRDCSLKGICLQKEIKRLNESRVNTFEDD
>NC_014533.1|WP_013334246.1|48618_49446_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MVQDIWQMSNHSYTLQSMVIELGAAAKGKPPATLGRAIHAQVLEWINLGNSELANQVHESQIAPLSLSGLLGNRRPKGTEAGDNFYFRIGLLNGNLIEPLLKGIEIWGTQPLIFANFPFVLRNYYTLPGTHRLAGATNYYVLTQTVQEQRKITLKFLSPTSFKQQKSIQLFPLSDLVFGSLQRRWNEFAPENLQIPALTWDALVTAYELKTYALKLESGAEIGSQGWISYEFNSSEQAKYASVLSQFAFFAGVGRKTTMGMGQVQLTVNNDITIN
>NC_014533.1|WP_013334247.1|49417_50197_-|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MKLYHCLLTLHDNVFFASREMGILYETEKYLHNWALSYAFFKVTYIPHPYRLQGEAAQKPNYLNDNNEQNLNHLNRAGVYVFPAKPLYWSYQVNTFKAAQSAYYGRFKKFGEDEAVKNYPFNYGRAKELAVGSQYRTYIMAKNEISEEIPHWIRLGKWSAKIEVSIIPIPESLIQNKSGEYLCDHPLNPLDLSDTTQLQLYNRIVMPPVSLVSQAQLQGNYYSVLGDNWKEFKQNFPSLPEQIYLPKGAFYGARYMANV
>NC_014533.1|WP_013334248.1|50264_51257_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MKLETLKPQFQTAFPRLASGKYVHFILLRHSQSFPIFQTDGILNTARTQAGINTPENISRLVLFKRKQTTPERLIGREILRSFNFTSSEENNSNYCQYNGEKSCKQCPDCIIYGFAIGDSGSERSKVYSDSAFSLGAYEQSHRSFTFNAPSEAGTMSEGGQMRSSINEQDHILPEITFPTVETLRDPTYESFIYVLGNLLRTRRYGAQETRTGTMSNYLLGIIFCDGEIFSNLYFTQALYDALKEKRDTPIADVCIEASNVARQLLDKEPVRQSQVIFDTQLEELLNEVTAIYQDEIQLQATLTTLYQQTQTYSQTFGALSGGKGKSKKK
>NC_014533.1|WP_013334249.1|51316_54232_-|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MLSLLKNLLLETLPEDTEPILRSYVEIVVPAMEKEFALISALGGSEDLHFKNLTQLGDRHAKEKAQRWSNRADQSLLVHVLNALLTAWNLLPYLHQPLSDLEKYLLCLGLTLHDYNKYCIGGGEESPHASDVEAILIICQELGEKLNFQSFWPDWKKYLSEIAYLAQNTQFKAGTNMISANYPPFKIPDHRRLQSPLRHLLAFGDLAVHLQDPAQIETETSGDRLREHLRALHIRKQLVYHRLRDTLGILTNVIHNATMLFTQELEWKPILFFAQGVVYLAPPNYQFPDISQLQEFIWQLISERLGGEMSTGRIGFKRDGKGLKVAPQTLELFSYAQLIKYLPDVIIANVANAKNPATPKRLEKLPLTDDEHKFLKKYSDLRADHLAEFIILAQREFFNNVPEYISWMLEALELSSKITPEQTQEQSGGVNYGWYRVAAYYVASHATLDSIHNKLIQIAENLSTWAEENHLFPQHQSPTREVFYSYLSQYLEIKSLTSQQPSFTDELTAYTLAKTKAAKQPICSLRSGEYLSEDQMDSVVLFKPQQYSNKNPLGGRKIKRGISKILSLEMLLRQACWSAVAGKLEEQNPIFLYIFPAYIYSPQMAAAIRTFTDEIKGVYLKKICQHWLQEGMDLNSLRSFPWLEIQEDEAAQFADKKYHSADLPFMATVYTTTRGNTVTEAWIEPAFLAVTLPFLLGVKVVATSSFIPLYNSDEEFLQSVLLDGVANFWHLLHLPSSLRIQDFSFALKRLLTTYSLHLSSRGVKGDPRWQDLIKTVRQTITDILNVFALANQGLRKDKRDHASLEEVYQYWQFAELLAQGNKTMEDKLKVTQKLVNEYRQFYQVGVNDSSHAILLPLTKALEVILSTPENWDDQELIDQGSGLIQAALERQDVYKRPLIKDKTIDYTTRQIQELEAIQTFMTTCVKELFGQMCKGDRALLQESRNRIKAGAEFAYRRLCLQEKTHKEETNS
>NC_014533.1|WP_013334250.1|54274_56413_-|type-I-D-CRISPR-associated-helicase-Cas3'
MKIQLKPLYSKLNGGVGNCPLKCEGVCKVHQAAPNALELKPPTGYTCPLSSHQAETYAHARAGDADIIFNLAATGDGKSLAASLPSLLDPNFRLMGLYPTIELVEDQIRQQRHYHKLFGLDASNRIDYLFGEELSRRVQDLNSNRFLELLYPIESQPIILTNPDIFHLITHFQYRNPAYGNELLPMSLAGFPDLWVIDEFHIFGPHQEAAMLNSLTLIRQTQQHPRRFLFTSATPKTDFIKQLDQANFKVELVKGVYANQETPGYRQILQAVELEFIDLKETKTLEWLKEKANKINNILKAESKGRGLIIVNSIALAVKITRELEKLLPNVLVKEISGRIDRKTRSEIQNNLQNSDKPVLIVATSAVDVGVDFKIHLLICESSDSATVIQRLGRLGRHPGFLSYKAFILVSGQTPWIMSRIEEKLPPDASIEPMEREQLIEVITNAFNPPKEFQEYRNRWGALQAQGMFACMSLENSKVMQPVRQRMSEDLRRVYGDKLESAQRRWYALNHDPVGKAIQKELLRFRGGTSLQAAVWDNERFYTYDLLRLLPYTTVEILERNSFLKAATHKGYTEEAFPERYIQVYLRVREWIDKREEISFHCSRNCDQLKTGELFLLSKLSLKGQHLQSEIINCLKGQKLLAFLIPVNRNQRASHWDVSRQLKLNPFFGLYRLTDAAGQAYACGFNQDALLLEALKWRLNNFFRSQSQPLIF
>NC_014533.1|WP_013334251.1|56962_57910_+|WYL-domain-containing-protein
MTYNQIAFALEILKLIAAKPRKREELSELLAEFLDKNDKNADDIPQKLTRTIRKLRDCGFNIKSAPHHPYELLESNFPVILSPQQRQALYMAAHFLANMGFSAPASQIIRIGKLSEADQPPNFKVDFSPPIDYSENQITTIVQKLQEQFERKCRYSIYYENSNGEAKFWDLDLSGLRLHNGVLYLFAFVPDADSRNIQKRPNVEQNFIFRVDRIKTFGGTTNIPWFWQEFPTLTIRYCMTGPLKTYQPRRQNERVIERNIEKEYVVIETTEEFIFWFSQRILQYGSNVQILEPEWLVQEIKQELIKAYQNYENNS
>NC_014533.1|WP_013334252.1|58271_59369_-|M24-family-metallopeptidase
MNQYHEEVSAKLELIRQTLAKTEARGVRLRGSDWFAWVTGGASNTVLLTAETGVAEVLITAQDAWVLTDEIEAQRLIDEELPSNFKLWINPWADMPKRETFVLEQTEGGLLESDRPNSSLEKPLSSSFLIHKRKILSSELERYRQIGRLASEAMTEVLNAAQPTWTEYQLAGAGAKALWNRGLHPALTLAAGERRLPLYRHPTPTGEKIGREAMLVFCARGAGLYANLTRFITFGRLSDEKAKLHHYVQEIEAQALNSCQPGISLNAIYQKLAQAYEQYGFSNAIREHHQGGTTGYLAREIVANPTTDDILSENMAIAWNPSLAGAKIEDTFIVLENGELENLTFDSNFPNVEVAGRLRPVPLTR

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Crispr_ID: NC_014533_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014533_3

208812-209007

Orphan

Consensus_repeat	Method
GATTACATCGAAACCTACAACTATGATGCTAACAGCAATCAAATCT	PILER-CR

2 spacers

The CRISPR arrays of NC_014533_3

>merge|NC_014533|3|208812-209007|PILER-CR
ACCTACAGCTATGATGCCAATAGCCACCTAACCTCTATCAGTTCTGACTCCAATGGAGATGGGCAGCCTGATTACATCGAAACCTACAACTATGATGCTAACGGCAATCAAATCTCTGACACTACTGACTCCAATGGAGATGGGCTGGCCGATTACATCGAAACCTACACCTATGATGCTAACAACAATCAAATCT

>NC_014533|3|3|208812-209007|PILER-CR
ACCTACAGCTATGATGCCAATAGCCACCTAACCTCTATCAGTTCTGAC	TCCAATGGAGATGGGCAGCCTGATTACATCGAAACCTACAACT
ATGATGCTAACGGCAATCAAATCTCTGACACTACTGACTCCAATGGAG	ATGGGCTGGCCGATTACATCGAAACCTACACCTAT
GATGCTAACAACAATCAAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014533.1\|WP_013334364.1\|214803_215229_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334368.1\|217510_218719_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NC_014533.1\|WP_013334366.1\|215980_216766_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NC_014533.1\|WP_013334349.1\|192182_193346_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_014533.1\|WP_013334352.1\|195205_198625_-\|cadherin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|333740
NC_014533.1\|WP_013334363.1\|214431_214800_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334357.1\|206343_207357_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182258
NC_014533.1\|WP_013334360.1\|210626_212525_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_014533.1\|WP_013334365.1\|215243_215624_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334355.1\|201570_202518_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340832
NC_014533.1\|WP_013334356.1\|202580_206057_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|213023
NC_014533.1\|WP_013334354.1\|200252_201215_+\|RICIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379501
NC_014533.1\|WP_157871998.1\|216776_217499_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NC_014533.1\|WP_013334353.1\|199332_199977_+\|N-methyl-D-aspartate-receptor-NMDAR2C-subunit	unknown	unknown	gnl\|CDD\|226789
NC_014533.1\|WP_013334350.1\|193379_194582_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340848
NC_014533.1\|WP_157871999.1\|218793_219399_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_014533.1\|WP_013334362.1\|213932_214346_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_157871997.1\|212548_213709_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_014533.1\|WP_063820756.1\|194664_195186_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_014533.1\|WP_013334358.1\|207591_207930_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370703

Protein	Function_ID	Function_description	E-value
NC_014533.1\|WP_013334368.1\|217510_218719_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	8.52788e-48
NC_014533.1\|WP_013334366.1\|215980_216766_-\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.56746e-90
NC_014533.1\|WP_013334349.1\|192182_193346_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.99025e-40
NC_014533.1\|WP_013334352.1\|195205_198625_-\|cadherin-like-domain-containing-protein	gnl\|CDD\|333740	NF012211, tand_rpt_95, tandem-95 repeat protein. This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.	1.87666e-16
NC_014533.1\|WP_013334357.1\|206343_207357_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|182258	PRK10130, PRK10130, HTH-type transcriptional regulator EutR.	1.97166e-19
NC_014533.1\|WP_013334360.1\|210626_212525_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.20367e-102
NC_014533.1\|WP_013334355.1\|201570_202518_-\|glycosyltransferase	gnl\|CDD\|340832	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.	1.70531e-53
NC_014533.1\|WP_013334356.1\|202580_206057_+\|glycosyltransferase	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	9.26945e-58
NC_014533.1\|WP_013334354.1\|200252_201215_+\|RICIN-domain-containing-protein	gnl\|CDD\|379501	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like.	3.11282e-29
NC_014533.1\|WP_157871998.1\|216776_217499_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.00801e-10
NC_014533.1\|WP_013334353.1\|199332_199977_+\|N-methyl-D-aspartate-receptor-NMDAR2C-subunit	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.32664e-53
NC_014533.1\|WP_013334350.1\|193379_194582_+\|glycosyltransferase	gnl\|CDD\|340848	cd03821, GT4_Bme6-like, Brucella melitensis Bme6 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.	7.43643e-92
NC_014533.1\|WP_157871999.1\|218793_219399_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.69325e-36
NC_014533.1\|WP_157871997.1\|212548_213709_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.27689e-37
NC_014533.1\|WP_063820756.1\|194664_195186_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	4.22312e-17
NC_014533.1\|WP_013334358.1\|207591_207930_+\|hypothetical-protein	gnl\|CDD\|370703	pfam09798, LCD1, DNA damage checkpoint protein. This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.	0.00292902

>NC_014533.1|WP_013334358.1|207591_207930_+|hypothetical-protein
MPNLTVNFNFVDLLNPSTTTFTLANLTKWAFATKATGTITDSNFLSSTNADSFDLVPSSRLFANLNGNNQSSGYIITPGIPTPLQSVPKPGSVVALLGLGLGLVASRGKKQA
>NC_014533.1|WP_013334357.1|206343_207357_-|helix-turn-helix-domain-containing-protein
MKNRDRIFEFSNLSLRHYYKLDGDELCQRMKPIEVESWQLSLGQFEGTVSQIIGDGVQMDLHQYNSLMRYKGVSLRTWQFGLPVKRQLIMFEHKYELEDNYILICPPQVGFMGVEKHFHGTYIFAFSLERLQYLCETLHLPEPEKFLGCANSFPRVVACSPTQMSQLRQSFEQLYQIFWTFNCKCHLQKDTLLINYLKEKLEEEIAENLLLTVATSQNIKLKKVIIKRSCVLKQVEDFMMNNLTAEISCNDICQTVGVSKRTLEYIFKEYYNITPKAYFKRLRLNYLRQCLRENYPQSNISEIAENLGFFHRGHLAADYQKLFGELPSDTVKVPGQN
>NC_014533.1|WP_013334356.1|202580_206057_+|glycosyltransferase
MNVSIIIPAYNAAETLGATLTSIQAQTFPHWEAIIIDDGSSDQTVAIAQEFAAKDHRISLVAQSNQGVSAARNRGIELAKFDWLLFLDADDWIKAEYLERMTKALEEDSSLDAVQCGTSRIAPDGSTMLEQYPLSLKDLFPVLALRCPLLIHSCVFRKALAQSIGGFDTSLRTSEDWDFWQRLARIGAKFGSVQEIMAFYRMRPNSLSRDVNYIFADALKVITQGHSPDPRVDNPHPNYAQGQPKDTLSKYKLLLSAWFAGFCLSQGKDARPLLELLVNDQDPNLSSQPLAHRLFQSVLVATCQQPPAWTTLWPTLEESIRDFLQALENQSQTIGLTHSTMAILERKVLQQTQITAPQQVGKTFAISLEVTEPFYDLDCPDAAERLYAVVTMEGTELGTIELPIWDKQVSAWLIKDAVAASFAWPILKRFFEHQGHFQTTQIPKAEPQNHSPLPKLPNKQEWELFLQEICLVPETATNPPKRSEDGSITLEISEELADIQVSVPELDVVLTVGGVALSCVSIPVENNFISAADLRAALSLSNGFELCRACVREGLLGKPLHTSSSLRARLAESAQKIQSTQWLGFSGSGAIEQLLTANTIVLGRRGGLEGGYRRAILPASVAQELLEMSQVSREPVIQLPGPNQQPERVIYAPELMIRPYKGENLLKSFSSPGVQTAFYGRAFFETLFSTQPDPWKYTTPYEQTKYEQTLSLLPSTEINQALEIACAEGHFTLQLAPRVHHLIAADISQVALNRTAERCSDLNNISFVQLDIIKDPLPGLFDLIVCSEVLYLLDNLEQLQTATSKIALALKPGGYILTANAHLIVDEPEQPGFKWGNPFGGKVISETFAKIPTLSLVKEIWTPLYRVQLFQRQPEGMLAEHQTPELIKLTEQPTALSPEQEAYVCWNGGQLKGNPTSQSVITRKLPILMYHRVAPTGSPQMSQYRVTPEAFEEQLRYLKDGGFYSVAWEDWQLAMISQTPLPGRALALTFDDGYLDFFEYAWPLLKKYGFTATVFLVSERIGYDNSWDATYGEKIALMGWREIQQLADQGVVFGSHSATHPSLIRLSYSSVIAQASRSRMLLERQLGIPIKTFAYPYGDYNPIVQHLIEACGYSIGLSCDSRLSQFEDNLLALPRLEVMGSDSLQDFVVKLSFTAKKN
>NC_014533.1|WP_013334355.1|201570_202518_-|glycosyltransferase
MRIYISDEHKYPAKRVGERTSKRLTDLLAQGLGELGHDVFYHLKDEILEPPPDCVKLVSKRMLDVDILQLQDIPLTGDNGELAAQRIPWVKSFHAPFGNHEVSQINKRNWIFVSKSHAESFGCERYVYNGLDPKEFIYSETKEDYFIFIILGLERAIFKGLGIALYLVQELGIKLVVAGSSQNKFYEKQFAAMCQEQGIEWVGEINGQRKAELIAGAKALLFPTMINEPFGLVAAEALISGTPVICSNRGACPELISPDVGFVCERYQDYITAIENLEKISPAVCREKAMSNFHYLKMAEGFVQEYLKEINFYQS
>NC_014533.1|WP_013334354.1|200252_201215_+|RICIN-domain-containing-protein
MASVLPTAGKYYYLLAKHSGKVLDVNEGGTADGAKVHQWTKGSGDNQKWLLQDAGDGSFYLIAKHSGKVLDVNGGATTDGATITQWTKKDGDNQKWLLQDAGDGYFFLVAKHSSKALDVGGSATTDGATISQWTKHGGDNQKWKFETVAPPSLPPISENGTIKTEAGKNYQVSITVKIPANIGYKNTFGIFAINEDGSTGGVKPGDANYAQTVVKNRISIPGVDEGSYQSGKTFQHTLPGGPEYSVFLIANGTPTSFLEKNPENKGSTPPLVYFFNTAANPDGKTHIKTISSNEYGFEDMYGGGDQDFDDLIVKIETVSV
>NC_014533.1|WP_013334353.1|199332_199977_+|N-methyl-D-aspartate-receptor-NMDAR2C-subunit
MSDYLHISNRERWQEIWQKLKAPSIPFDVFAQLIRAYSLPSRFYHNLEHINDCICLFTQTQFLANHPEEIELAIWFHDAVYNTKRNDNENKSSQWAQRVILRSGLDRAIAQRISALIKATGHQMAVTDRDAQLLVDVDLSILGREDAVFWQYEENIRKEYSWVPLEIFQRKRVEILGQFLTRQHIYYLSEYREMFEEKARTNLRQAIARLSSQI
>NC_014533.1|WP_013334352.1|195205_198625_-|cadherin-like-domain-containing-protein
MSNLSKPGFSSINEEKQGEIASASLQTDMLSNVTQNLLFTWQKLQLNQIPKSGEPLLETVDVSDNNLVMHLDFEKVTNNIITDISPDGVINNGYLKKGASTNITNSPFNTVAKFDGIDDYIHVNSSVDINLNKIAKRTIALWFKVDNKDIADHKQVIYEEGGKSRGLNIYIFQGRLYVGGWNTIESGWKGTFLSTDKIFSNNWHHVSLVLNAQPDLKSVQSGVFSAYLDGQKFGEGNGSQVWSHSGNVGIGNINQDTYFHDASAPTTGAFKGNIDDIRIYNRALTSQEIAALRVLGNSLPIPENDFFSTSKSKSLTISESTLLSNDSDPDNDILKIISISNAKNGSVILDAQRNAVFTPNTNFTGDASFDYVVSDNRGGTATATVKVIVNSALALPDLVTKYSPASVPALPTGIDVFTPTVVGNSTNTMSPQIAEWTRMGQRGDTLVLTGWQFSNLTGTEVGKDTKFWVYGQTNNNNGVLLQATVQKLDGDIAAITLPDSLPQGSSFLVWVQNSSGYSTPVMINQTETWWMQQTATRGQVASIFGRNLSQDEGTQNSHIYLEDAAGKGYWADIIAVNPYKVDFKVPQSLANGDYKVFVHNGDGGQYGWSKPLTMTVNDGLNYTGSVFNVKDFGAKGDGITNDAAAIQKAIDEADQSDSMATVYFPAGSYAINAVNGWALYPGSSDVRLLGAGKDLTTIKVADGSNQPYLFQVNGESNRITFQDLTLDANKKNAPNLNTVTHIRYSEDLQYINVRIKAEGTQPFDWHNNNRVLMKDSDVIGQANFLGTAKQVFIDKTNFYGTNYTDMLLIGFGTQMLSITNSTAQNLDTSDPNNGKWLKGRFFVEQPHWASSQYQYIGSNETIDLAPPPADFNGDGEIDIDRNSGEQIMWEQGGAKDHFGLVTAATANQVTVNFPSVSGVNGNWNMTITQGKGIGQSRRIKNFNQATNTYEIEGSWNVVPNQSSVVVVSKLPSNIVVYDNKLDGTTEAYNSPSHVASTGVQTFHGGVDMIIDHNSFHELRNGVSLWSGWSSGNSEQDTNPVNFAQVTNNNFNQNLVGVNFPGISGTAGTNILGNVARGNYLNNVDVAFGMSMMNPDLYSSSLNANMNVFEKNTLEQVKQFMDINQTDHIGNTIVLQNTFL
>NC_014533.1|WP_063820756.1|194664_195186_+|YdcF-family-protein
MTAFKQAPQPQAFFILGGDFRREEVVAELAKWYPSLEIWVSSGPNTQKTKELFQMAGVPPRLLHIDARAIDTVTNFTSLVADFKKKHIQHLYLVTSDYHMPRAIAIGIIVLGSQGIVFTPLSVHSEQPSESWLRILRDIGRAFLWLFTGDTGYGLLNFMSQLKNLSLGLIYSN
>NC_014533.1|WP_013334350.1|193379_194582_+|glycosyltransferase
MKILIITPYVGANYGGIAKVVQDIAIALGSQGFNIDLITTNANDAQKLDVVFNHWLDQGKYRIRYFDSWNKHDFILSLSLITWLFKNINNYDIIHTHTIFSPLILITQWLCQRKKIPYLVTPHGMLEPWALSYKSWKKNFYYNIFEKKALQKASLIQVIANLEADHVQSLGFKHYVIIPNGIDHNEFAFLSDPESFYQQFPQTRHKTLILFLGRIDPKKGLDLLAPAFARVHSQFPETHLVVAGPDNIGFLSTVERFFAEAKCLNAVTFTGMLTGKLKYAALAAASLYIAPSYSEGFSMSVLEGMASGLSCIITTGCNFPEAATAKAALIVEPMADAIADALNYCLSHPQEAKAMGNRAREFILNNYTWEKSAKKLIDVYKFLLIKNSCQNPSVNFSEKA
>NC_014533.1|WP_013334349.1|192182_193346_+|glycosyltransferase-family-4-protein
MLIVIIFINIGSYHAARLRAIYSVCQEKGWNFTAIQATDNTLEHPWGNLEREITFPLKTLLPSSTTANYKQEKAAALISSCLDNLKPDIVAIPGWGFSLSRAALFWCKRHQVPAILMSETKWDDEKRQWWQERLKFWLYIKKYDAALVGGKLHRDYLVKLGFPSDRIFLGYDAVDNDYFTKSAEAARLDPAAARQRQPKIPNKPYFIALTRLLKRKNVHRLVEAFAVYRQQVGNNQAWNLVICGSGEEEDTIRNFIQEKQLQNSIHLPGFISYQALGDWYGLASAFVHPALQEQWGLVVNEACAAGLPILCSRTVGASYELVIEGENGFLFDPENTQDIARSLLTIHQIDPTLKNQMGKASQKIVTNYSPTQFSEGILKAIAALSKV
>NC_014533.1|WP_013334360.1|210626_212525_-|ABC-transporter-ATP-binding-protein
MSQSIEQTTANLEINNVQNNHNQQNLITEFVKNIKNYSIVLARSLPLLWETAPKETSIIIILVLLRSCIPAISIAINKQIVDGISLALKSPESANFRTIISLVVFWVTAIFIENISTPWYNSAFINLADKLTANINIKLMEKADTFIDITNFENSKFYDELELLQNRASAEPLSLLQGILEILAILITLVSMLILLSTTAWWIPALILVACLPQTYLSFKLESEIWNKIFYKSPQSRRMRYYSNVLLTDTFVKEVRLFDLSAFFRQRYVAAFEDKYQMISQLRGKQAFITTILGILSASGNAFSFCWVVLQALAGKLTAGSILLLIQSLAYIQENINRLLQSSLILQRSTLFMEMFFRFMETQPSMTVSLPSKNVPKPLQSGIVFDNLEFAYPDGRKALSGISFTLHPGETVALVGENGAGKSTLVKLLARFYDPTSGNIYIDGENLKELDLKEWRKQIAVVFQDFCRYALTIGENIALGDTSAMDDLERLKLASEKSEIAYKIEKLSQGYSTPLGKQFDGTELSGGEWQKLAIARAFIREDDAQIMILDEPTAALDPRSEYEIFNSFAQLVRGKTAILVTHRLASVRLADRILVLKAGKLVEVGTHEELLQKNGEYATLWNMQAEQYQMSY
>NC_014533.1|WP_157871997.1|212548_213709_-|glycosyltransferase
MKKFGSVGIFSIFPLDSNNQTIPGVELRYHCNTAKVKRSFWDNLQRQLWWVFPQGYPSSAQRYAEAADQQLKEVLAKFQPDLVIIEMIVHRYIPTLKDYGCSLILDEHNINGIWLEQYYKARQTTQKQKLSIWQKILLALELSRTKIIEQELIAQADQVWTCSKIDNQSLQDLYGRNSNSWVIPNGIDVSYYDNVRLGKCDLPDELKNKQRNILFLGKMSYSPNAVAVELLIDKIYPRLRQIYPDCRLLLVGREPNQRMLEAAGRDSGIIVTGKVSDIRPYLAASSVMVVPLQQAGGTRLKILEAFAGGCPVISTAKGAEGLEVKDGEHLLIREEIDEIIEGIKQIWSEPDFGQKLADSAYELIKAEYSWEAVEKRVSSAISELFS
>NC_014533.1|WP_013334362.1|213932_214346_+|hypothetical-protein
MTQKPVYEHYMKADERPPISKELLLTKLVGTWLNTNPNSNYLARLLLSERDKRLILRAYGANEPHPIDWGEVEAIAYAGSNLSVAAGFHAFYPLNGNKINLWAYSALGVLVIQIYVSYQDDSHRSSHFSREFFRLTS
>NC_014533.1|WP_013334363.1|214431_214800_+|hypothetical-protein
MEQNSALAANTNDVDSVLGTWVNSNEKTQWIEKFTLLQKNDKLLLHIYSSQSPQDWGETEVNLFINRNSGDKAFWAKYNLGSVEALLAANTNQGLWIIAAFLQFKDTKQPNFLCREFYYRVG
>NC_014533.1|WP_013334364.1|214803_215229_+|hypothetical-protein
MSEINQDIYYMKADQRPSVQEPIDLFPLVGDWINALPNTSYLSRVVLTQRDNRLFFRGYGANKPDAIDWGEVEAIPFVAGTSLLAGGFQAFYNSGEIERHLIANQKFGILVIQCFVRYLDGSQRSSHFSREFFHHPPKLES
>NC_014533.1|WP_013334365.1|215243_215624_+|hypothetical-protein
MERNEIYGNQPDQKTVINFTRFLGTWVNFYDQTTRLKKFILSEREQRFFIHVYGAENPEDWGEVEIAPFIDNLGELAFSAFYESESSQSLLAANHAKGLWAIVEFHQLKNSDESRHFYREFYYKLV
>NC_014533.1|WP_013334366.1|215980_216766_-|SDR-family-oxidoreductase
MDLGLKGKIALVTSSSRGIGKAIALGLAAEGCQVFICSRHPENLAKTAKEIQEKTHQSVIPIQADLSNKESIERLVTTITEKTEKIDILVNNVAGPPFNRHYELTDKDWQESFELTFLSQVIICEAFIPLMKKNHWGRIIFVTSVAIKQPGILIANAQRASVAVYAKTLSSELGEYNILVNTICPSFAITDQYYKIADEVAKKRQISQAEVLEEWRQSVPLKRPASAEEVANLAVFLASEKASYITGTCIQVDGGFVKSLF
>NC_014533.1|WP_157871998.1|216776_217499_-|methyltransferase-domain-containing-protein
MAFCLLAFNFKTSFKSRGIKPVDNENYYLKSRESGQNIYEIWEQGKNYKDSVTPATYDPQYRTFMCQKIESLVGEQKTKPILSIGSGNAFVESDLHQKGYDVTANDVNKEAVELARKKGLPAIWADIKDWEPIGKTFTLIYGDGVAGHLYDTIGGLRTIFRRLKFLLSEQGGTLLISNDPATNGELLHPHPQLESFYWFSADYICSELVKAGFRTVESEYFVYNRPISGPRKRLIVTGKI
>NC_014533.1|WP_013334368.1|217510_218719_-|acyl-CoA/acyl-ACP-dehydrogenase
MPTNLTVNKQQVLAQMTALAQEKFARRAAHYDQTASFPVEDFQDLFNAGLQAPAVPVEYGGLGLGHSTDIYTLWMMTKELAKVDLSLARCWEGHTNSQILLAAMGNESQKKRWFEGIVKRGEKWAGWSGEPLSKIPGQTDKIGTRVQEVKGGYIIDGTKVFATSANAAQWSILLVNTAGVGGVRHHNGASSAVLMLACDLSDPSVSFDATWWEPIGMRATISYLVRFEQTFIPQENLIGYPGQYLLEEWQTRFTPQYGAAFLGAAEGAYDYALKYINQQERQQDPYVQHRIAKAAINIETMYLWLQKVAKLWESGQEQEAKPAGNRVRYLAEQLALETLDLCVRTCGARSLIKPSPLERIFRDLSFYTLHDNCDRVLASIGQEILGESYDRSFFQNKPSASP
>NC_014533.1|WP_157871999.1|218793_219399_+|NAD(P)H-dependent-oxidoreductase
MLSLKNLTQLRARSLKLYVPIVLGSSRVGRRSLKVAQWILQELQGLDRVATELIDLGEYQLPILEERLNQMAIPIPGVVKFCAKLGEADGIVIVTPEYKGGYPAVLKNALDYLEPQALRYKPIGICTVSAGGFGGLDCLSGLRLVCLALGGLPIPDKFPISRVGEMFDEQGNLLFLDLKPKLQAFFRELLWYTEAMKNHKS

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Crispr_ID: NC_014533_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014533_4

487679-488993

Unclear

Consensus_repeat	Method
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	PILER-CR
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CRISPRCasFinder
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CRT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACA	PILER-CR

17 spacers

cas2,cas1,csx18

The CRISPR arrays of NC_014533_4

>merge|NC_014533|4|487679-488993|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGGCTATTTGGGGGGCTGAATCTCAAGCTCCTCAATGATAGGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGGTTTTGCCATAACAGATAAACTCTTTGAAAGGAATCAAGGGGGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGTTCAGAACAAATTTAATGGTTTAAAAAATTCAATCATCAAAGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGAATATATGTTAAGCGAGCTTGCAACGCTTATGAACTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGGTAATTTTCAGGAGGGCTTACACAGAGTTTACTAACCCTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGCTCTAACAGCGTCGCCGATTTCTTGTTGCTGTTCTTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGATTATGATGTAGCCAAATGCGGAGCTACTTTAACTTGGAGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGTAGAGCCAAATCAGCAATGATAAAGCATCCATCACCAGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGACCACTCCTAGAGGAAAGTATAAACAAGACGACGATCCCTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGTTTTAAAAAAAAGTGCAGTAAACTAAAGCTATTGGTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGCTGCATATTCCTCCCACCCACAACGAAGCAGACCAGAGTGGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGAATCTATTAGCTAATCCTCATGTAACTGTTGTTATGATTCTCGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGTGGTGACATCATCTACAACAAGACGAAGATTGATATCCTTCTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGATTGATGGGCCATACTCAATCCATCCCCCCTGAATTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGAGTCCTAATAATCGCAGAGACAACAAAATCAATGTTAGTCGCGGAGGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGTAGAAGATTTAGATCCGCTTGAGAATTTGGAAGCCGTTTTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGGGACAGGTGGCTCTCGTCTTTAAGCTCAATGGTCGTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG

>NC_014533|4|4|487679-488691|PILER-CR
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GCTATTTGGGGGGCTGAATCTCAAGCTCCTCAATGATAG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTTTTGCCATAACAGATAAACTCTTTGAAAGGAATCAAGGGG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTCAGAACAAATTTAATGGTTTAAAAAATTCAATCATCAAA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATATATGTTAAGCGAGCTTGCAACGCTTATGAACT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTAATTTTCAGGAGGGCTTACACAGAGTTTACTAACCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTCTAACAGCGTCGCCGATTTCTTGTTGCTGTTCTT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ATTATGATGTAGCCAAATGCGGAGCTACTTTAACTTGGA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAGCCAAATCAGCAATGATAAAGCATCCATCACCA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ACCACTCCTAGAGGAAAGTATAAACAAGACGACGATCCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTTTAAAAAAAAGTGCAGTAAACTAAAGCTATTGGT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTGCATATTCCTCCCACCCACAACGAAGCAGACCAGAGTG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATCTATTAGCTAATCCTCATGTAACTGTTGTTATGATTCTC
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TGGTGACATCATCTACAACAAGACGAAGATTGATATCCTTCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGATTGATGGGCCATACTCAATCCATCCCCCCTGAATTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AGTCCTAATAATCGCAGAGACAACAAAATCAATGTTAGTCGCGGA
GGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAAGATTTAGATCCGCTTGAGAATTTGGAAGCCGTTT
TGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GGACAGGTGGCTCTCGTCTTTAAGCTCAATGGTCG


>NC_014533|4|3|487679-488993|CRISPRCasFinder
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GCTATTTGGGGGGCTGAATCTCAAGCTCCTCAATGATAG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTTTTGCCATAACAGATAAACTCTTTGAAAGGAATCAAGGGG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTCAGAACAAATTTAATGGTTTAAAAAATTCAATCATCAAA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATATATGTTAAGCGAGCTTGCAACGCTTATGAACT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTAATTTTCAGGAGGGCTTACACAGAGTTTACTAACCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTCTAACAGCGTCGCCGATTTCTTGTTGCTGTTCTT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ATTATGATGTAGCCAAATGCGGAGCTACTTTAACTTGGA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAGCCAAATCAGCAATGATAAAGCATCCATCACCA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ACCACTCCTAGAGGAAAGTATAAACAAGACGACGATCCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTTTAAAAAAAAGTGCAGTAAACTAAAGCTATTGGT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTGCATATTCCTCCCACCCACAACGAAGCAGACCAGAGTG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATCTATTAGCTAATCCTCATGTAACTGTTGTTATGATTCTC
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TGGTGACATCATCTACAACAAGACGAAGATTGATATCCTTCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ATTGATGGGCCATACTCAATCCATCCCCCCTGAATT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AGTCCTAATAATCGCAGAGACAACAAAATCAATGTTAGTCGCGGAG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAAGATTTAGATCCGCTTGAGAATTTGGAAGCCGTTTT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GGACAGGTGGCTCTCGTCTTTAAGCTCAATGGTCGT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG

>NC_014533|4|3|487679-488993|CRT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GCTATTTGGGGGGCTGAATCTCAAGCTCCTCAATGATAG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTTTTGCCATAACAGATAAACTCTTTGAAAGGAATCAAGGGG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTCAGAACAAATTTAATGGTTTAAAAAATTCAATCATCAAA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATATATGTTAAGCGAGCTTGCAACGCTTATGAACT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTAATTTTCAGGAGGGCTTACACAGAGTTTACTAACCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTCTAACAGCGTCGCCGATTTCTTGTTGCTGTTCTT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ATTATGATGTAGCCAAATGCGGAGCTACTTTAACTTGGA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAGCCAAATCAGCAATGATAAAGCATCCATCACCA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ACCACTCCTAGAGGAAAGTATAAACAAGACGACGATCCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTTTAAAAAAAAGTGCAGTAAACTAAAGCTATTGGT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTGCATATTCCTCCCACCCACAACGAAGCAGACCAGAGTG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATCTATTAGCTAATCCTCATGTAACTGTTGTTATGATTCTC
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TGGTGACATCATCTACAACAAGACGAAGATTGATATCCTTCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ATTGATGGGCCATACTCAATCCATCCCCCCTGAATT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AGTCCTAATAATCGCAGAGACAACAAAATCAATGTTAGTCGCGGAG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAAGATTTAGATCCGCTTGAGAATTTGGAAGCCGTTTT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GGACAGGTGGCTCTCGTCTTTAAGCTCAATGGTCGT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG

>NC_014533|4|5|488727-488993|PILER-CR
	GCTATTTGGGGGGCTGAATCTCAAGCTCCTCAATGATAG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTTTTGCCATAACAGATAAACTCTTTGAAAGGAATCAAGGGG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTCAGAACAAATTTAATGGTTTAAAAAATTCAATCATCAAA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATATATGTTAAGCGAGCTTGCAACGCTTATGAACT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GTAATTTTCAGGAGGGCTTACACAGAGTTTACTAACCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTCTAACAGCGTCGCCGATTTCTTGTTGCTGTTCTT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ATTATGATGTAGCCAAATGCGGAGCTACTTTAACTTGGA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAGCCAAATCAGCAATGATAAAGCATCCATCACCA
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	ACCACTCCTAGAGGAAAGTATAAACAAGACGACGATCCCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TTTTAAAAAAAAGTGCAGTAAACTAAAGCTATTGGT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	CTGCATATTCCTCCCACCCACAACGAAGCAGACCAGAGTG
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AATCTATTAGCTAATCCTCATGTAACTGTTGTTATGATTCTC
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TGGTGACATCATCTACAACAAGACGAAGATTGATATCCTTCT
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGATTGATGGGCCATACTCAATCCATCCCCCCTGAATTGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	AGTCCTAATAATCGCAGAGACAACAAAATCAATGTTAGTCGCGGA
GGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	TAGAAGATTTAGATCCGCTTGAGAATTTGGAAGCCGTTT
TGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	GGACAGGTGGCTCTCGTCTTTAAGCTCAATGGTCG
TGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014533.1\|WP_157872004.1\|493217_494291_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|213890
NC_014533.1\|WP_013334529.1\|481551_482040_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334533.1\|486349_487558_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_014533.1\|WP_013334539.1\|494453_495029_-\|DUF922-domain-containing-Zn-dependent-protease	unknown	unknown	gnl\|CDD\|368715
NC_014533.1\|WP_013334542.1\|495904_496921_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271194
NC_014533.1\|WP_013334528.1\|480716_481478_+\|coenzyme-PQQ-synthesis-protein	unknown	unknown	gnl\|CDD\|227364
NC_014533.1\|WP_013334534.1\|489190_489469_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014533.1\|WP_013334537.1\|491793_492993_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225822
NC_014533.1\|WP_013334526.1\|479676_480048_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334525.1\|478741_479290_-\|DUF2808-domain-containing-protein	unknown	unknown	gnl\|CDD\|371328
NC_014533.1\|WP_013334536.1\|490824_491112_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_014533.1\|WP_013334535.1\|489594_490584_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_014533.1\|WP_013334524.1\|477951_478719_-\|DUF2092-domain-containing-protein	unknown	unknown	gnl\|CDD\|378283
NC_014533.1\|WP_013334540.1\|495098_495482_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334532.1\|485516_485855_+\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|379303
NC_014533.1\|WP_013334527.1\|480108_480591_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338744
NC_014533.1\|WP_013334544.1\|498995_500735_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_014533.1\|WP_013334531.1\|483166_485410_+\|SLC26A/SulP-transporter-family-protein	unknown	unknown	gnl\|CDD\|223732
NC_014533.1\|WP_013334543.1\|497356_498760_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NC_014533.1\|WP_013334530.1\|482065_482551_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014533.1\|WP_157872004.1\|493217_494291_-\|radical-SAM-protein	gnl\|CDD\|213890	TIGR04070, photo_TT_lyase, spore photoproduct lyase. DNA damage to bacterial spores from ultraviolet light accumulates in the form of 5-thyminyl-5,6-dihydrothymine, spore photoproduct. The damage is repaired by spore photoproduct lyase, a member of the radical SAM family of enzymes. The score of this model is set to restrict itself to spore-forming members of the Firmicutes, but additional homologs scoring below the trusted cutoff tend to occur in radioresistant organisms (e.g. Kineococcus radiotolerans) and may be functionally equivalent. A related family in the Mycobacterium lineage is described by family TIGR03886, and may or may not be equivalent in function. [DNA metabolism, DNA replication, recombination, and repair, Cellular processes, Sporulation and germination].	6.35006e-122
NC_014533.1\|WP_013334533.1\|486349_487558_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	9.48146e-23
NC_014533.1\|WP_013334539.1\|494453_495029_-\|DUF922-domain-containing-Zn-dependent-protease	gnl\|CDD\|368715	pfam06037, DUF922, Bacterial protein of unknown function (DUF922). This family of proteins has a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold.	1.0396e-65
NC_014533.1\|WP_013334528.1\|480716_481478_+\|coenzyme-PQQ-synthesis-protein	gnl\|CDD\|227364	COG5031, COQ4, Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism].	1.10755e-34
NC_014533.1\|WP_013334537.1\|491793_492993_+\|hypothetical-protein	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	8.10456e-47
NC_014533.1\|WP_013334534.1\|489190_489469_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.52356e-31
NC_014533.1\|WP_013334525.1\|478741_479290_-\|DUF2808-domain-containing-protein	gnl\|CDD\|371328	pfam10989, DUF2808, Protein of unknown function (DUF2808). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	5.14811e-48
NC_014533.1\|WP_013334535.1\|489594_490584_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.36234e-114
NC_014533.1\|WP_013334524.1\|477951_478719_-\|DUF2092-domain-containing-protein	gnl\|CDD\|378283	pfam09865, DUF2092, Predicted periplasmic protein (DUF2092). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.2356e-99
NC_014533.1\|WP_013334532.1\|485516_485855_+\|SdpI-family-protein	gnl\|CDD\|379303	pfam13630, SdpI, SdpI/YfhL protein family. This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.	8.2223e-08
NC_014533.1\|WP_013334527.1\|480108_480591_+\|hypothetical-protein	gnl\|CDD\|338744	pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper.	0.000103977
NC_014533.1\|WP_013334544.1\|498995_500735_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.12272e-15
NC_014533.1\|WP_013334531.1\|483166_485410_+\|SLC26A/SulP-transporter-family-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.89236e-55
NC_014533.1\|WP_013334543.1\|497356_498760_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.24086e-148
NC_014533.1\|WP_013334542.1\|495904_496921_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271194	cd01194, INT_C_like_4, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.16309e-80

>NC_014533.1|WP_013334533.1|486349_487558_-|glutathione-S-transferase-family-protein
MTFPLSWTQLEALTNFETDPINGSTNAQATLRLFNHDESEVRVTLYRDNHAWCPYCQKVWLWLEEKQIPYRIKKITMFCYGQKETWYKRLVPSGMLPALELDGKLITESDDILIALERVFGPLTQSMKAKEVIPLRQLERLLFRAWCNWLCYPARSSSFDQQNRQKFINVVQMVEDALSRTEGPYFLEQFGTVDVIFTPYVERMNASLYYYKGYSLREENPHLAAWFEAMESRPTYRGTQSDFHTHAHDLPPQMGGCYENGEPQMLINKARVDNGPWFGLPDVTYPEPETSQQEALQRVLKHRNNLIKVNPCDDTLFDEALRCALTYMITKEVCTPPPDSDIALRYLRDRINVPRDMSIYAAKRLREALETTAALAGDRQGPPIPLDHRRDQDPANFREAFC
>NC_014533.1|WP_013334532.1|485516_485855_+|SdpI-family-protein
MLTVFIHQPFFIPEIIINLLSLPLIFKLIPRQGWYGIRTAKTLSNDRYWYSANTFGGRVLFTSTMIYLVVAWTIPCTSSECPDLKVFLIHLTAMALPLFTGMILIHSYLKKL
>NC_014533.1|WP_013334531.1|483166_485410_+|SLC26A/SulP-transporter-family-protein
MTLSSMINELRYITNFPTHLSLNFRQIFLSLIMTLIVGVSEISICLSLAILLFGEKLPNYVPNGFSLLLLSGVIANIIVAFWSSSTNIVVVPQDVPIAIFTVISSNLMTHLPSGTTDQNLWLTVVTTMVLTTFLTAIFSGTLGLLKFGNLIRFIPYPVMGGFLAGSGWLLLKGSLGMMAGINFQGNDFFRLFEPNILSHWGAGAILSIMLFWLTRRFKHWLVIPGFLMAAIVGFYLVFLISHSSLEIAREQGWLLESLSQKVTLNLFNPLSITQANWSLILGESGNICSIILLSTVGLLLNASAIELATKRDINLHQELRAVGLANLLTSFAGGFICYHQLNYSMLAQKLTINSRLVGLFTAGAYGMALVFGESIIYLFPKPVLGGLLLFLGFELLSQWLYDTWFKLPFTDYITIVIILMVIAMVGFLPGVAVGLLVTLMLFVVNYSRINIVKHQFSGVTHQSNVAYAPDKVKILKEKGEEILILELEGFIFFGTANNLVEVIQARIEDISKNPLRFLVLDFREVRGIDSSANISFLKIQQIAQKNGSILVFTHLSEFLKSFLEKGDFIFDNSCQIFSDLDRGLEWCEEKTLEVNEYQEKVNYDLKQQLKDLGLNLEEISKFINYLKFLKVEREEVIFQKGDVSDGLYFLESGQISVVVSMANGQTKRLRTYKSGTIIGEMGLYQQANRSATVICNSSSNLYYLSTQNFQKMEQENSVLASKFHRFIVILLAERLRHRDVQLENLLS
>NC_014533.1|WP_013334530.1|482065_482551_+|hypothetical-protein
MDGLKREIKKLGFLTLFFFICFGYILLLMKLFLEDYEINTYVLSKAIIGALVAAKAVAIMDSTPLFKRFLQSPRYISILYKTFFYSLTVIVIGVIENLFHAYKETKNMGAAIVKFVETRNIHHFFAVILCIGVVFLIYNIYDEVNIYFGKGKVKNFFLERP
>NC_014533.1|WP_013334529.1|481551_482040_+|hypothetical-protein
MKKINNKSPIFLVISSLIFGFNLPAKAETCVPISVVNGQGNSITKTVSPPTIPAGPLGMVGVDITRNNWNTDWAVPSEQKFKRFIATISSDGGAFDIKMYLKYSDQTTGEFYNSDGVQINSNQPLQIEAAPRPDDEPYQVNLLVGGLNHIGSNYTASVVACY
>NC_014533.1|WP_013334528.1|480716_481478_+|coenzyme-PQQ-synthesis-protein
MAYRYINQLATPENINRFLEFVDLAAGSGQDTTNVWEIERRLVDSRPMQLCVKAVLAESSSAQLVKERYIGPAYDLEAMGKMPKDSLGWTYSKIMTALGYDPQFYPQRTDFESDADYIGFRVNKTHDIHHILTGFSLDGLGELGVISITVAQTRYPTFLLIDLLALLMTFFTSDTLLSEVENDGDLGKTLGYKFDLISQGITIGRNAKPLFPIKWEEGFERSLEEWREELNIKPVLEGPWSWYSRPELRAAIA
>NC_014533.1|WP_013334527.1|480108_480591_+|hypothetical-protein
MKKIVKGISLGISVLGVFQAELCLAQLAEPFAYPSQGQSAQQQQQDHFACYSWAKQQTGFDPAQPQPQTTAQSPQQGGLVRGALKGSLLGLVGGAIGGNVGEGAAIGAGVGALGGLMRRQEQQQQANQLSAQAQAKEQQNLQRYFQAWTACMTGRGYTVK
>NC_014533.1|WP_013334526.1|479676_480048_+|hypothetical-protein
MQLSLSLKKPIVGGLATLAVMGWRFIPVAQAQNQEPLPEEVVNAIAAKTIQKFNNASCQELSASMAAKKSNQGNSGQENLKDQLTDRFIQLLRQNPSLTEQFFGQISTPVLTKLFECGLIPPQ
>NC_014533.1|WP_013334525.1|478741_479290_-|DUF2808-domain-containing-protein
MRFLNLLTLTLSISSLTLATPTPAQQLPYPANSTFFTGTPPSLVSANTPDPLIAWPHPHYYFTFNLPASSPESLAKITIAPEANQETIGFDLLKTVASQSTANTKEATVALESITQDPKSGLITMTFNPPISPGTTLTVTLQAYRNPGIPGTYLFRVQAFPAGENPVGLDLGVGSLSFHQLL
>NC_014533.1|WP_013334524.1|477951_478719_-|DUF2092-domain-containing-protein
MIALKKLSPFLITGLIASGIPLITQAQTQQQIDPRAQEILSQASHYLKVSQNYNFQAQITFDDVMPPDLKLQYHATANLWVERPNHLRIDYTGDRRNVSFYYNGKNFTLFDKGQNLYGSFAAPPTIDDTLNKTLKDYGFLVPLADFAYSDPTAAFSRNIQKGFYLGLVSLKGIPTHHLAFTEQNIDWQIWIEDGKKPLVHKLVITYKNLTAAPQYIVEFSNWNFNQKQLNPQIFSFKPPENAVKIEFIPAKSSNR
>NC_014533.1|WP_013334534.1|489190_489469_-|CRISPR-associated-endonuclease-Cas2
MRFYVITYDIPCDRRRKKVSDLLEGYGERVQYSVFECVLNKAKYEKLRQRLRKRIKEDEDKVRFYPVSEHTFQQVEVWGGPPITKAAGSTIV
>NC_014533.1|WP_013334535.1|489594_490584_-|CRISPR-associated-endonuclease-Cas1
MKTLYVSQQGCYVCLKQELLLVKFKEKLIAEVQLPLLEQILIFGKSQITTQAIRACLWQNIPIAYLSRMGYCYGRIKSIEKGYRQLARYQQELAFAERFIVARSIVQAKLKNSRVLLLRQQRRKDLEILSLTIKTLDYLIEQSNKSNKLEQLMGYEGAGAASYFSAFGQLLSNPDFVFMARSKQPPGNEVNAMLSFGYQILWNHLLTLIELVGLDPYAACLHQGSERHAALASDLIEEFRAPIVDSLVLSLINRGMINLGDFEYRDGGCFLNNSGRKKFLNAFVGRMEEKISTDEKDKQPRWDLLMQQVKHFKQFIYSPAYGYQPYLIR
>NC_014533.1|WP_013334536.1|490824_491112_-|hypothetical-protein
MYLTKRAACVRNIAVSSATGAITLAILLIAPLGLAAVIINTVLVTVSSFAVGLVGDWVVSWLLAPSHHQHLSSGNRQEYLIHSRRQREIEEYKDY
>NC_014533.1|WP_013334537.1|491793_492993_+|hypothetical-protein
MPLLTREILEAGRLYRSTGAISTKLLRQEVYRAWERSHLLGANPRAMQAEKLSSLDLDRLLNKESPLIQAVRPYAQILAQAAGKEPHAVLLSDCHAVLLDLWGDKDMVQSKSFPQPGSLLSEEVAGANGIGTPLAEGTYSQIVTAEHFIDGFYPFTCLGMPVRNLKQEIVGVLNISLQSPEHSQKFKELLLCASAGVEAELILGNLEAALSQVKAARPDDYEVLEKLRQDLVQTHHAARLRMDFSSRLIATNRIDYAQQLLQQAEQSIAIFRHRSYFWYSLASSERDSIKSIFLMDTILTLVKLLSTEATIRQVEVITPSFNEEIKITVFEKKFLRKLLRYFLAAFEKAGAKGILMLEIRKKFATKFVQINFIVMPGNNNFSSNPIVSSLTVPINKSNQ
>NC_014533.1|WP_157872004.1|493217_494291_-|radical-SAM-protein
MGDSSTASPSFDSPRLWYPKRVLFTPSALNTPTGQQIHQRMVALNLPIEELSSNRINIFKGLDEREIYRQAKTTLAVVTAPSSSLKLNPVPPSADWQFHIAQGCPAHCQYCYLAGSLTGAPLIRVYANLPEILNNLSSYCQPNSDTSFEVSCYTDPLALEHLTGSLSECIRYFGTMPAANLRVVTKFDEISPLISLPHNGQTRIRVSINAAPVSRSFEAGTASVEARLKALRKLALPQSEGGGGYRVGVVIAPIMLIDNWQLHYRRLFEQIEKALDFECDLTFELITHRFTAKSKEVILQWYPKTKLDLDEKGRSVKYNKFGGTKYVYLAEQMKMMKQFFTEEIAQRFPSSQLLYWT
>NC_014533.1|WP_013334539.1|494453_495029_-|DUF922-domain-containing-Zn-dependent-protease
MVSLLGITEMGEIQATKQLNPNNLNVTVKVNYYPIYGKGVQEIRESLRTRGIVSEKEGKRYAAFTHWYVQWNYNYQEEQQQCKITQVVIKTTVTITLPAWQMPSNTPNSLRIKWNQFSQALRQHEENHQRHGVLAGQSILKTLKNLPPSSTCRQLEANANQTAHNIIKKYNQADINYDQQTQHGKTEGAIF
>NC_014533.1|WP_013334540.1|495098_495482_-|hypothetical-protein
MNQYFIDLTNKLLVNDPETIEFSIKFIEADSKQAGYGRVRALMCRRLKHCTLSQAQRDRLVKHILERLKSGNFAQQFKDELRLALFLNKKRSFEAALSSSKDCRDHVRRYAQWILEKHTFDTEPDGK
>NC_014533.1|WP_013334542.1|495904_496921_+|tyrosine-type-recombinase/integrase
MLSFFPTPPDETGSLFDPIEHLNIANGNPADDTLKTYSAALKQFLTWCKIKAISPMCATEGTICSYRQYLLKTKKYKPASVALKLTVVRRFYTMATKQGFIAANPATDVKPPTQSYDPATHNNYLDLTEAKQLIESLPNDDSLPSLRDRALIEIMVWQGCRTVELYRLNVGDIIKRNEDLGLNVQGKRSRRIVPLTPDLAQLLQKYLKARKKAGEILKADTPLFTSLTRNKGSRLTRRSIARIVDKYLKINGWKNNNLDEHQVDHDDFDDLFICSPRKLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGDRWRYNPALAIRNAMGV
>NC_014533.1|WP_013334543.1|497356_498760_+|sugar-porter-family-MFS-transporter
MIENQAKVYPKANQSFTLLIACTAALGGFLFGFDTAIINGAIKALYQAFNATSWTIGLAVSLALLGSAVGAFYAGPIADRFGRIKTMIVASVLFTISAIGAGAAFGIWDFILWRVVGGIGVGAASVIAPAYIAEVSPAHLRGRLGSLQQLAIVIGIFIALLCDYAIALAAGSAGNPWLFGVSAWRWMFWSEIPPALLYGIGGLIIPESPRYLVAQKKEEEAATVLAKVIGGDVQTKISEIRETVLRERKPKLSDLLSRNGGLLPIVWVGIGLSLLQQFVGINVIFYYSSILWQAVGFSEQDSLWITVITGATNIVTTLIAIAVVDKFGRRPLLLLGSLGMTITLGIMAITFNNAPIINGQPTLSGTTGTLALVAANLYVFCFGFSWGPVVWVLLGEIFNNKIRASALAVAASIQWVANFIVSTTFPPLLTTVGLGSAYALYGIAAAISFFFVWFFIQETKGKELEEM
>NC_014533.1|WP_013334544.1|498995_500735_+|iron-uptake-porin
MSQNPPLLNNKWRKSWINSLVWLNCFLGIATPSFAQIQGNSMTNINNANSLPPMSWQPDPTVSSMSKVPSVSQLRDVEPTQWAYQALRSLVERYGCLVGWGAELVPHYPNNLYRGDMALTRWEFAAALNNCLNSLETQLQNNLTVSREDLETFKRLSEEFKQELAILDTKLDNLENRVAFLEDHQFSTTTKLFTQIIWSVDDTFGNKVGTDEDQSQTRFGYRIRLNLETSFNGQDLLRTRLQVGDLIPTSEVTGTNMTRFNYDDDSNNQVFATHLLYRRLLTNNLQLTVGPVGVGYTDITDTLTPPSIPDDSRGIPSRFGEYNPLYRRGGGGGALNWNILGLIEGASIGPSDPNAHDLILTIGYLSTNINNTIAGNGFFNEGYHVLAQLAYYVPGAGVGLAYSHTYGPAGQVDLTGDNGTLNAIQPFGNNIATSSDSYNLQGYVRLGDNFFIHGWIGYYQANANSKGISNISDGVGGTIPLTVSKGDEADFWNAAISFTFPDIGGEGNLPGILLGIPPTVSHSDLKRDCNTPYHIEVFYRWQLNDHIAITPGFWAILNPEGDNRNDTQWVGHIRTGFNF

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Crispr_ID: NC_014533_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014533_5

841042-841965

TypeIII

Consensus_repeat	Method
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	PILER-CR
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	CRISPRCasFinder
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	CRT

12 spacers

cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1

The CRISPR arrays of NC_014533_5

>merge|NC_014533|5|841042-841965|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGAGGTGCAAAAATGAATGAAGAAAAAGACAAGTATTTTATTTAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGTTTTATATAGTTATGGAAAAGATCAAAAATTATATAGAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGAAATACTACTGATTCTGAAAGAAGAAAACAATTAAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGGCCAAAAAATGTAGTGGCCGAATCGCGCCAGTTGACGGGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGGGATCAAACCAGACGCGAAGAATTCGACCGCAAGCAAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGAAACAAATTAATTCTGAATAATCAAGCTTTTCCATGTTCGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGTTTTGAAGGATAATGAATTATTGCTTTTTCCATTTGAGGGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGTTTCTATTTATTACCTATTATCCTTTTAATAATCCGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGATTTATGGCTTAACTCCAAGCTCGGGAACAGTTCTCACGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGAAATTTACTGATATCTGATAAAAAAGTACCAATTTCCGTGAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGAGAAGTCAGTCGAACAGTTCAAGAAGCCTATAAAAGAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAGTCTAAATACCAAAGCTATAAAAATAACAAAGGGAAGAGTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG

>NC_014533|5|6|841042-841965|PILER-CR
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AGGTGCAAAAATGAATGAAGAAAAAGACAAGTATTTTATTTA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTTATATAGTTATGGAAAAGATCAAAAATTATATAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAATACTACTGATTCTGAAAGAAGAAAACAATTAA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	GCCAAAAAATGTAGTGGCCGAATCGCGCCAGTTGACGG
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	GGATCAAACCAGACGCGAAGAATTCGACCGCAAGCAA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAACAAATTAATTCTGAATAATCAAGCTTTTCCATGTTC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTTGAAGGATAATGAATTATTGCTTTTTCCATTTGAGG
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTCTATTTATTACCTATTATCCTTTTAATAATCC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	ATTTATGGCTTAACTCCAAGCTCGGGAACAGTTCTCAC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAATTTACTGATATCTGATAAAAAAGTACCAATTTCCGTGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AGAAGTCAGTCGAACAGTTCAAGAAGCCTATAAAAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TCTAAATACCAAAGCTATAAAAATAACAAAGGGAAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG

>NC_014533|5|4|841042-841965|CRISPRCasFinder
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AGGTGCAAAAATGAATGAAGAAAAAGACAAGTATTTTATTTA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTTATATAGTTATGGAAAAGATCAAAAATTATATAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAATACTACTGATTCTGAAAGAAGAAAACAATTAA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	GCCAAAAAATGTAGTGGCCGAATCGCGCCAGTTGACGG
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	GGATCAAACCAGACGCGAAGAATTCGACCGCAAGCAA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAACAAATTAATTCTGAATAATCAAGCTTTTCCATGTTC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTTGAAGGATAATGAATTATTGCTTTTTCCATTTGAGG
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTCTATTTATTACCTATTATCCTTTTAATAATCC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	ATTTATGGCTTAACTCCAAGCTCGGGAACAGTTCTCAC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAATTTACTGATATCTGATAAAAAAGTACCAATTTCCGTGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AGAAGTCAGTCGAACAGTTCAAGAAGCCTATAAAAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TCTAAATACCAAAGCTATAAAAATAACAAAGGGAAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG

>NC_014533|5|4|841042-841965|CRT
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AGGTGCAAAAATGAATGAAGAAAAAGACAAGTATTTTATTTA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTTATATAGTTATGGAAAAGATCAAAAATTATATAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAATACTACTGATTCTGAAAGAAGAAAACAATTAA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	GCCAAAAAATGTAGTGGCCGAATCGCGCCAGTTGACGG
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	GGATCAAACCAGACGCGAAGAATTCGACCGCAAGCAA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAACAAATTAATTCTGAATAATCAAGCTTTTCCATGTTC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTTGAAGGATAATGAATTATTGCTTTTTCCATTTGAGG
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TTTCTATTTATTACCTATTATCCTTTTAATAATCC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	ATTTATGGCTTAACTCCAAGCTCGGGAACAGTTCTCAC
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AAATTTACTGATATCTGATAAAAAAGTACCAATTTCCGTGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	AGAAGTCAGTCGAACAGTTCAAGAAGCCTATAAAAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG	TCTAAATACCAAAGCTATAAAAATAACAAAGGGAAGA
GTTTCCATTCTATTAGCTTCCTCCTAAGAGGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014533.1\|WP_013334735.1\|830527_831973_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_014533.1\|WP_013334931.1\|852889_853924_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_014533.1\|WP_049802761.1\|852548_852743_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334742.1\|842960_843257_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334732.1\|828320_829403_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334748.1\|850899_852387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
NC_014533.1\|WP_013334734.1\|829960_830344_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NC_014533.1\|WP_013334736.1\|832945_835033_-\|hypothetical-protein	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_014533.1\|WP_013334745.1\|844221_844512_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014533.1\|WP_013334738.1\|835514_836543_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|274210
NC_014533.1\|WP_013334733.1\|829745_829964_+\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|226603
NC_014533.1\|WP_013334744.1\|843885_844194_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334737.1\|835035_835515_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_014533.1\|WP_013334740.1\|837710_840611_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_014533.1\|WP_013334739.1\|836554_837718_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_014533.1\|WP_013334746.1\|844537_846553_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_014533.1\|WP_013334743.1\|843249_843786_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_157871991.1\|849302_850811_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014533.1\|WP_013334741.1\|842241_842775_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_157872014.1\|828162_828228_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373239

Protein	Function_ID	Function_description	E-value
NC_014533.1\|WP_013334735.1\|830527_831973_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.48221e-43
NC_014533.1\|WP_013334931.1\|852889_853924_-\|IS701-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.49521e-08
NC_014533.1\|WP_013334748.1\|850899_852387_-\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00548227
NC_014533.1\|WP_013334734.1\|829960_830344_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.22243e-55
NC_014533.1\|WP_013334736.1\|832945_835033_-\|hypothetical-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.92772e-14
NC_014533.1\|WP_157871991.1\|849302_850811_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.4116e-07
NC_014533.1\|WP_013334738.1\|835514_836543_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.56768e-24
NC_014533.1\|WP_013334733.1\|829745_829964_+\|DUF2281-domain-containing-protein	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	4.99835e-12
NC_014533.1\|WP_157872014.1\|828162_828228_-\|hypothetical-protein	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	0.00147114
NC_014533.1\|WP_013334740.1\|837710_840611_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	9.89964e-39
NC_014533.1\|WP_013334739.1\|836554_837718_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.05392e-64
NC_014533.1\|WP_013334745.1\|844221_844512_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.71866e-25
NC_014533.1\|WP_013334746.1\|844537_846553_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.5573e-118

>NC_014533.1|WP_013334740.1|837710_840611_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSKSYWEAKIRGIIYPFSLTKIQELIGQTNENQGYWKKSNLVLSQSTLDPNIITLAAEIAHASDRTVLNSLSISLENNNDFKVSHLLSGDSLNLSLSYSNYQKLLTSAASQQPLSHSSSENTNTIELEEIKELYWWLWRCLPEIICQQLGNQDNFLLPASLILPDASIWSYASITSAIAGALVGYSPSQQPEKTSNQLQTPYLATFSFTPIQEIIKASRKMRDFWAGSWVLHYLSAKVCWKLAQIYGADCLIYPSLFQQPLIDHWLRNKWPNFSHWIDKPTEKAILTAGFPNVIVILLPSDKVPSAMQTARETVIQEWLVLGKKVFKELENRRWTRELSENSPTWQEWLRYQWQTYWTALPINNKVDPLTWQIKENSEAFQQWQDELNRICQLNEENKLFNLKEHQFIQAVAQEKPDLRVNIGSWWCYLFDQLRLTAGSVKNSRNWCIPSSFYPRSTISGLGSVVYPQPQDYRQRVTEGDTRQYWQEQGGLFDGNEQLNATEVLKRGLHRILPELLFNDPNKKIPYYYPDLSSGVAGWLKSYPDRESNFIKACEAVKAKFDWTYRKRHSNDKRKPLEFPALLPWGIPWIDEDSRRKTWPNPRLLNAGWLIDDFPLDTDESLQIQKDEAAKLRNCLSKYFNQGNNPTDWYVIATGDGDGMSKWLKGDKLNNYADYMFLNQSILNNESINTAIQEISEIKKRMGPSTHNALSRALLDFSNRLVPYLTEERYAGRLIYSGGDDVLAYTNLWEWDNWLWDIRECFRGKEDSRGEFNHEGNYWKRKNDDSRPLFTMGKNATVSFGVVIAHHSVPLAIALENLWDAEKKAKNYQHQDKKKDAVQVRVLFGNGNKLQALAQFDVFYHWKQLIELELTKPIEPSLFEMAAQLWEQHPAPCVNAIKPWTIAFCERREGLQGEDKKSFQNQLENTLTAIYNNTPEPPDSEIKNWLKLAAFVLRNRNIKPIQGGNNE
>NC_014533.1|WP_013334739.1|836554_837718_-|CRISPR-associated-protein-Cmr3
MNNLKWYRITPLDVLLFRDAKPFSPGERAWAGSIFPPPGHAIAGAIRDLIQSNITIKLTGPFLTYKDQLYFPFPFSYDREHLCKRENNTAVPIPVVPLNWDNLHPLHSLLETDQNLPQPLVFESKHPFNDKLEGQYSAYLDYETILEYLKTSQISVEKWQKNRIKDNESPQPWKIETRPHNTITQGTRQVLEEDGYFVENTIRLQDGWSLAVGIKAKSEDENLKLTDNSQIIRLGGEGHRAILESCPQLGEQWQELEKISQGNQKKAGKKIAYLVTPGVFERRQRNNHPHCKPSPWEWTTAYPNNPTQEKGYLVSFATDKPLVISNRMRFGDNISTPAPQVYAAPAGTVYYLESNSEIILYQDSNASKQIQRWRDLGYSELLWISYQ
>NC_014533.1|WP_013334738.1|835514_836543_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTQLNCVYLYLYSPLHTGGTTQEGNLVGIARESHTNLPYIPSSTIRGRLRASIEDKDLRVQLFGPELKDIAPPSNENLSNTSEEVSNNSEADQTSNSNNLEQGDIWIGDGSLLWFPLASLSHGVVWITCPRLLQRWKRYYPSSLSIPESGYYTNLNTKNPIYLRDAVVKDGLNKWDDCNKFIPKDNVNTEIDSVLLLPNQHCATLIQMGLWRQVKIKLDEHKSVEGGFRYEEAIPSDTLMYFPWGLTAQVRDADEIELENENSKKQKELHVKRIKLAQKYQIKSQKDIEIVNKLFNKHLEKKNQQILQIGGQESLGRGFVKQWIWNPKNPSEQTQSQPAEVK
>NC_014533.1|WP_013334737.1|835035_835515_-|hypothetical-protein
MIVKIFDPKVLSEPVYDALSQLRQKYDKALASNIINKEQRDSHLKEQKNQAVELYTYLATWGLMRLKAEEFALNKKNLNSNSCIKERVETSQYGKLEVVREFFECLKKLIPDSENKLELRNLAKMDVDEYLGIMGLGLAIAQEFSFWATAIYYDIKGDE
>NC_014533.1|WP_013334736.1|832945_835033_-|hypothetical-protein
MKNDHKSTSKAFERPPNPKSSKSSQSSIPKKMNFSPILKDENLFPFLIDFQNLPDLPVDASFVEYLRWMRELKIEDSEQNKAENNATKLHLLQLAQDEKYVNYSKYLKRANQRIKNIVSLKEGQKIIVTCPWRIRVGGHRGPESILLPAFDALGIPFIPSSTLRGIARTQAIREVMKNNPDLSYQKAEQHETIIDHFGSLETKDKSKREGKVTFLDAYPVDDKSPSGGLSLDIANNVWKWGENNLPEYQPNPNLFLSLKQPTFLIGIIPNHYCEKKQLNKVEEWLLKGLASGVGSQINSGYGCLTKSRNYEICENNQQILLELDFTLKGQLINSYKSYNNLSQPYKINGDRIERNKKNIPKLVESSKPEVRPIAFKSMLRYWFRVIALGVLPKIRVKELEAFIFGGIEPKHQGLIQVQIHDSDDGNLPTQKKFGTQSGKLIILASYELSQDNYQLLIDFIEALTWLMFHLGGVGLGARRPLYERKRYNAQGNRVPPYWRGADLKAENQDEFWKIPETIEKFEKRFHACLNCFYNNLSKIQNSYVQFRQKLQPSVNHENYIINSQCPLKVEKIKPRSWDEALDQNCRVIVCQGISNNSKNFALSLLHSENLNKKDLNSSGKNKYLCGDDGCPSPVLVTHLKNYEVVVIFGASKILEKPKNEGEKAKQINPRYQYFTEIKRQCEQVKILWDGLEFPS
>NC_014533.1|WP_013334735.1|830527_831973_-|transposase
MKNQEIEKIISEFSRWRENLYNGLNARKETLIELIDALSSNQQAASVVELSLNPLFRRDYNSLYKGIQEFLPHQNEKSYLEQINRLFDAAFLTINQEKSRNYNLLGIDTTPYPRAYSATLADRTFIHSPNPIKGNKPISIGHTYSVVCALPDRNLTGNVPWVVPLSGERLQSQEKATHVANQQLKKIIKNSLFPAKQLSVLVVDSLYSQRDFIGEQVQHENLIPITRVRSNRVFYRQFISQKGDSPSSGHPRWYGDKFDLKDETTWTNPDEVSQCFFTTKKNRHLTVTISAWQQMLMRGTKNYKMNQHPFTLLQILVKDEAENLIWQPMWLIVIGQNRHQLSLVDCYQSYRQRYDMEHFFRFGKQRLLMTAYSTPDVEHEENWFKLTLLAYVNLWAARHLTTILPRPWEQYLKTNESEKITPSLVQRDFRRIISTLGTFASSPKRRGYSCGRIKGYKQELRTRHQVIKKTQKNQLSKVTTS
>NC_014533.1|WP_013334734.1|829960_830344_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MNLLLDTHIFLWFVNDEPKLSDPLKDLIEDENNFSYLSVASLWEMSIKYNLGKLTLAPSYQEFVEREVNQSRVILLNIKLEHLKINASLPFHHRDPFDRIIISQAMAENFPLITVDSVFHQYSIMLI
>NC_014533.1|WP_013334733.1|829745_829964_+|DUF2281-domain-containing-protein
MAKLDIAQAKSNLSKLLDLAIQGEEIVITQDDQPVAKISPVKRPLKRGSAKGKVWMSDDFDDPLEDFQEYME
>NC_014533.1|WP_013334732.1|828320_829403_+|hypothetical-protein
MKIVTCKNGLSPKKSFRRYLIVPLLSLAFLFTVVTHAVALNDTVACPSSKDGITTINKGTIKAITTDQSSLQVQCQNSQLITISVKKPELQAILRGFSVGDFVNLDYDTANELKSVSVVISFVNGPLRLVTLVVTGLLLYIITFLMVKVTGKNLNDIFVGQDKRLSNSKSQMAIWFFVFLVSYVSLNALRAINGGLGFVGGIDIPQNLLLLSGVSVLTYGGAKVITQTQVNSKPGSKPDASDNAGLKDFVTDDAGNTDFGDLQMSFITLLAVVVYLLQLFNFLGTLELHRLVTLPDVDTTILSIFGLSQGAYLTKKAAVATGANADLGVTDDRTTQSHPGVTTPTQTVDGAGAGSTEAEE
>NC_014533.1|WP_157872014.1|828162_828228_-|hypothetical-protein
MSWATEELKWANLGDRRLNNR
>NC_014533.1|WP_013334741.1|842241_842775_+|hypothetical-protein
MIDKIKYIPDIFRYINTITVIIAAVTAVILWVRGILPVLLRLGNGLAKGKIAIFAKGDNLTSLIELLKSSGLFSEKNFIRIIDIGDFPKAKKANLYLIFFPNWNNMDSIKEIMNHKNNGIPLIVYAPPQNKIIQDQRAIPSDIMAKLNEDGNTIVTNFKGRLLNDIIGSLITGNYEK
>NC_014533.1|WP_013334742.1|842960_843257_-|hypothetical-protein
MSKQKPLRYRERKLLRLYAHCELSMTPQAFYGKWDVNYEQIAEICHRSLSTVRGWFRQGENYRSPNSSDLRHLAMMDFIWQEFEAIPDELWQKLCNSD
>NC_014533.1|WP_013334743.1|843249_843786_-|hypothetical-protein
MYQQQTSSIELYSSDYRQALSDFGVVSLIEKLEELTKTQWQRPEIEQLARLLIQQLINTLSYDWIDSYLNVIEKGQGHIISHLLSGNQYLPIPWDTPSFVLDAAKPMYAVGTVVRWRTFDEPELTDWGIVMGRFYGYAPENGRWMWCYLILLDIDAPSARWCVLDTAWEQDLERFEDE
>NC_014533.1|WP_013334744.1|843885_844194_-|hypothetical-protein
MGVSTKKQMKQERAPPSIALFSLQFTHKAQKQLKSLSPQVRQQYQKAFHLLSTQGTHYRSLRTHRYQQKKGTIWGSSASMFLRFYWEYQDSSVILILFLGSH
>NC_014533.1|WP_013334745.1|844221_844512_-|CRISPR-associated-endonuclease-Cas2
MTNKTLYLVCYDIVQDSRRNRVSKLLEAYGCRVQKSVFEILAAKSQYDKLKQKLEKMLNLDEDQLRFYIIPEHSRSKTLILGIQPDFYVDDTAFII
>NC_014533.1|WP_013334746.1|844537_846553_-|CRISPR-associated-endonuclease-Cas1
MQFPLNELYYAWEQVRRGSPSPGIDGITTDLFAGVKKDELIRLQQELIEEIYQPYPARGFYLPKNNGDKRLLGIPAVRDRVVQRWLLEDLYLPLEEVFTDCSYAYRPGRGIQMAVKHLYYYYQIQPKWIIKSDIRSFFDSLNWSILLSILEHLKLDPIIQQLVEQQLKSGIVLKGRYFPRNQGVLQGAVLSGALANLYLSEFDRKCLEKGINLVRYGDDFVAACQSLGEAERTLNLITQWLERIYLQLHPKKTEIYAPDQEFTFLGYLFKKGQVYAPLPPEPRKKGYPLDPSGMPRRPRPIYIHSFLSQPPKICSLKPKTSTQPKILTNPKHYFVDTMTTLYITDQGSYLKAQGYQFHIFYQRELRCKIPVNQVSHIVLFGCCNITHGAVRLALTRRIPLLYLSQRGRYFGRLETEGQAKVEYLSQQVKRAENPEFTRLQAENIVRAKLNNSRVLLMRLNRRRSNSSVKQAIANLEKLRDNLPLANSMDELRGYEGKAATVYFQALGSLFQAPFTFEKRSKRPPTDPVNSLLSLGYTLLSQNMHSFVEAMGLHTHFGNLHVPRNNHPALVSDLIEEFRAPLVDSLVVYLVNKKIFTPEDFTPPDGRNGVYLHPDSLKKFLKHWEEKLHSEMTHPYTQYKVSMRRCLELQVREYIASLMGDTDGYRPMLWTK
>NC_014533.1|WP_157871991.1|849302_850811_-|tetratricopeptide-repeat-protein
MSLTNLNTSKELFQRLNINLDEVPLEYLADYTAITYFLTIEESSPSYVSNLEKVRKYLESFYHLCQIKDWQRSLIVLQIEPEAKIQEELHNLLGIWGYHEQQKMIYQDLLYKVNPQCDATCLTGLGNVYDTQGNYSLAIEYHTKQLELAQEIGDDSGEWIALVGLGNVQKALGHFQDSLTYFHQALDIARQIKDIRGEVIALGSLGNIYMGLNNNDESKEYTENCLTLAQQHQFSLFEARAAIILGNISRDENNVQEALNWYHHGLEIAQELDDIAVIIDAMRSLGDSYEELGNSLEALEWLHKSLEIAQEFGDKAIEAESWRGLGNAYATLGNLEQAIFYYQKRLDFLELTEDKANIASNLQGLALAYDKLNRLAEAIKYEEKRLKILTELEDWEKVADSHAYLGYAHLGLNNYYEALANLMAALALQKEQGNQKGKANTLYNLAELMAHLDQITPALQLCQEGLTVAQECDLELVEEFKELQELIEAYSRQLIEEEDDEV
>NC_014533.1|WP_013334748.1|850899_852387_-|hypothetical-protein
MPRSARLHKERKAQVIEALKRNGFLTQGDLAAHLEVALSTINNFINSKPVYITKFEEICHALNLDKQAMLKPLNEEVNSNLASQEEIEKTSLFSFIAYDDYWVGRKDLITSLTEKLQGAFRFLFILGLTGIGKTALAERIILERQKTSSLTKSYDFKRVNFEALGNATDFMTVAIQWLEAWEIQVPSPQRNPEQVIWHLTQYLQHNTVLLLFDSFENLLGGNEEEGWGNLADNWWEKFFLSLLSAQSCQTRIIITSQDLPLSLVEQRYNQYWHCHLLTGLDENEQENLWEIIGFNIDDNLEEKALLMRLGKAYQGHPLVLRVISGEIWESFGGNVKAYWEDVKSKIETVETALAEAENEAQKQMGSEDNWKLHKLTRKVRLEVNKQRLTSVFNRLEAQSTDAYYLICAASVYRVPVQVQGWLMQLAVLIKRIENQFCNEERQEMALEELCYRFLVEESVNPNNQRVLGLHHLIRSVALEHYQQLITKLKQQSKTA
>NC_014533.1|WP_049802761.1|852548_852743_-|hypothetical-protein
MWQQWVYENPHLMIELANAAKGKTLTDKFATSDISQARALAEILNENPQYSHINLGIKPNDPTL
>NC_014533.1|WP_013334931.1|852889_853924_-|IS701-family-transposase
MRQQTKPSTAKCDLDIYTNYLIAEPKWSGCSRLGQIMDISHDSANRFLLRENYEPKDLFDEVKKFINLTGGTLSADDTIIEKLYSNPSSCKLIGYYWSGKHKKVIKGINLITVYYTDLNGNSVPINYRLYDKEEGKTKNEYLKEMIEEVLEWGIVPKTITTDSWYSSKNNLKFFKDKKLDFLVGIAKNRQVKVLGGKFCKVEQLEIPEDGLKVYLKEFGWVKVFQRVFKNEKPRYYLIYQTEESESDNKLLTRNQLRYLCSIHWGIECYHRALKQLCGLNKFLVRTSQSIATHIFCSLRAFCQLELMRIQETIFTWYEVQRELYLKVAREFILKRLEEKNTLAA

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Crispr_ID: NC_014533_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014533_6

846786-849039

TypeIII

Consensus_repeat	Method
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CRISPRCasFinder
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CRT
GTTTCCATTCTGTTAGTTTTCTCCTAAGA-GAAAAG	PILER-CR

31 spacers

cas1,cas2,cas10,cmr3gr5,cmr4gr7,cmr5gr11

The CRISPR arrays of NC_014533_6

>merge|NC_014533|6|846786-849039|CRISPRCasFinder,CRT,PILER-CR
TTATTTAATTAGTTAGTTTTCTCCTAAGAGAAAAGCATTCAAGTAGAAAAACAGGAACTATGGAAACATTTGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCCTTATTATTTGGGGGACGGAAGTAACTTTATGTGTTTCCATTGTGTTAGTTTTCTCCTAAGAGAAAAGCTTATGAACAGCTTGCTCAACGTGCTGGTCTGATTTAAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTGGTGCTGAATTAGCCGCATCGTTTTCGGGCGGGATTGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGGGATGAAAAAATCGAACGAGCATTTGAATTATACAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCCCCTTCAATATGCAGATGTTGAAGTTCAAGGACAGGCTGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGAACATGGGAAACCTGGCAAGGTTTTGTAGCAATAAGGCTGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCAGCGACGAAAAATGGCAAAAACTAGACGAATAAAATGGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCGCAATTCCTAGGGATAGCAGTAGCTGTACTATTGTTTCCCTTCTGTTAGTTTTCTCCTAAGAGAAAAGCTTTAGCGCAGAACTTTGGTTTCAACCAAGGAACAAAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGATATAAACCAATTCACGAGGGCCATTAGAAGAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTTTAAAAATTATCTAATAGACTATGTAGGGAAGGTAAAATCGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTTCGGTTAAACACTGAACGTGTCAATCGGGATCTAACGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGACTCCAACTATGAGGAAATAATCTCGCCCTATCTTGAGACAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTCTACTTATTCAACGAGATCTTTGTTGACCCATATCTTCGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGATCGTTCAGAAATCTTTTACAATATCAACACAAACGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTTTTATGTATTTTTTGGGGGGGAGGCTGATCTTTGAAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCGTTACTGGTTTTCTCAAGAATCAGTAGATGATGGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCAGTGAAGCAGATAAACAGCTTGTTTATCGTCAAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCATCAAAAAGATAGCCAGTTGCTTGAATGGCACGCTAAAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTATCCTGATGTATTTTCTTGCGGGGTGCATTTTCAATGCAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTGTTATAAATACAAACGGACGGGTTACATTTGAAACAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTCGTGGTACCAGTTATAACCCTGCCCGGGTTCAATAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCGGTGACGACGGTATCGATATTATCGATGCTACGCGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGGAGTATCGAAACGGAGGGATGGCATCAGTCACACAAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGCGTTTAATGCAAATTTCCCAAGCTACTGCACCCAGGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGACGTACGATAATAGAATCCTCAAATGAGGAGGAAGGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTATGCCACTTTACTTCCTGTGGCTGCAAGAAAAACAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGATTTTTCCAAAGTTTCCAAAATGATGCGCAGATAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTATAACACTCCCATAAGAGTGTTGAGTAGTGTCGGTAGCTGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAGTAGTCAAGATGGCAAGTTCACTGTAAATTTCAGAGTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG

>NC_014533|6|5|846786-849039|CRISPRCasFinder
TTATTTAATTAGTTAGTTTTCTCCTAAGAGAAAAG	CATTCAAGTAGAAAAACAGGAACTATGGAAACATTT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CCTTATTATTTGGGGGACGGAAGTAACTTTATGT
GTTTCCATTGTGTTAGTTTTCTCCTAAGAGAAAAG	CTTATGAACAGCTTGCTCAACGTGCTGGTCTGATTTAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TGGTGCTGAATTAGCCGCATCGTTTTCGGGCGGGATT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	GGATGAAAAAATCGAACGAGCATTTGAATTATACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CCCCTTCAATATGCAGATGTTGAAGTTCAAGGACAGGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	AACATGGGAAACCTGGCAAGGTTTTGTAGCAATAAGGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CAGCGACGAAAAATGGCAAAAACTAGACGAATAAAATG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGCAATTCCTAGGGATAGCAGTAGCTGTACTATT
GTTTCCCTTCTGTTAGTTTTCTCCTAAGAGAAAAG	CTTTAGCGCAGAACTTTGGTTTCAACCAAGGAACAAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATATAAACCAATTCACGAGGGCCATTAGAAGA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTTAAAAATTATCTAATAGACTATGTAGGGAAGGTAAAATC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTCGGTTAAACACTGAACGTGTCAATCGGGATCTAAC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ACTCCAACTATGAGGAAATAATCTCGCCCTATCTTGAGACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TCTACTTATTCAACGAGATCTTTGTTGACCCATATCTTC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATCGTTCAGAAATCTTTTACAATATCAACACAAAC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTTTATGTATTTTTTGGGGGGGAGGCTGATCTTTGAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGTTACTGGTTTTCTCAAGAATCAGTAGATGATG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CAGTGAAGCAGATAAACAGCTTGTTTATCGTCAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CATCAAAAAGATAGCCAGTTGCTTGAATGGCACGCTAAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATCCTGATGTATTTTCTTGCGGGGTGCATTTTCAATGCA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TGTTATAAATACAAACGGACGGGTTACATTTGAAACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TCGTGGTACCAGTTATAACCCTGCCCGGGTTCAATA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGGTGACGACGGTATCGATATTATCGATGCTACGC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	GAGTATCGAAACGGAGGGATGGCATCAGTCACACAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGTTTAATGCAAATTTCCCAAGCTACTGCACCCAG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ACGTACGATAATAGAATCCTCAAATGAGGAGGAAG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATGCCACTTTACTTCCTGTGGCTGCAAGAAAAACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATTTTTCCAAAGTTTCCAAAATGATGCGCAGATA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATAACACTCCCATAAGAGTGTTGAGTAGTGTCGGTAGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TAGTCAAGATGGCAAGTTCACTGTAAATTTCAGA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG

>NC_014533|6|5|846786-849039|CRT
TTATTTAATTAGTTAGTTTTCTCCTAAGAGAAAAG	CATTCAAGTAGAAAAACAGGAACTATGGAAACATTT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CCTTATTATTTGGGGGACGGAAGTAACTTTATGT
GTTTCCATTGTGTTAGTTTTCTCCTAAGAGAAAAG	CTTATGAACAGCTTGCTCAACGTGCTGGTCTGATTTAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TGGTGCTGAATTAGCCGCATCGTTTTCGGGCGGGATT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	GGATGAAAAAATCGAACGAGCATTTGAATTATACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CCCCTTCAATATGCAGATGTTGAAGTTCAAGGACAGGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	AACATGGGAAACCTGGCAAGGTTTTGTAGCAATAAGGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CAGCGACGAAAAATGGCAAAAACTAGACGAATAAAATG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGCAATTCCTAGGGATAGCAGTAGCTGTACTATT
GTTTCCCTTCTGTTAGTTTTCTCCTAAGAGAAAAG	CTTTAGCGCAGAACTTTGGTTTCAACCAAGGAACAAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATATAAACCAATTCACGAGGGCCATTAGAAGA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTTAAAAATTATCTAATAGACTATGTAGGGAAGGTAAAATC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTCGGTTAAACACTGAACGTGTCAATCGGGATCTAAC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ACTCCAACTATGAGGAAATAATCTCGCCCTATCTTGAGACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TCTACTTATTCAACGAGATCTTTGTTGACCCATATCTTC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATCGTTCAGAAATCTTTTACAATATCAACACAAAC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTTTATGTATTTTTTGGGGGGGAGGCTGATCTTTGAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGTTACTGGTTTTCTCAAGAATCAGTAGATGATG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CAGTGAAGCAGATAAACAGCTTGTTTATCGTCAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CATCAAAAAGATAGCCAGTTGCTTGAATGGCACGCTAAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATCCTGATGTATTTTCTTGCGGGGTGCATTTTCAATGCA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TGTTATAAATACAAACGGACGGGTTACATTTGAAACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TCGTGGTACCAGTTATAACCCTGCCCGGGTTCAATA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGGTGACGACGGTATCGATATTATCGATGCTACGC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	GAGTATCGAAACGGAGGGATGGCATCAGTCACACAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGTTTAATGCAAATTTCCCAAGCTACTGCACCCAG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ACGTACGATAATAGAATCCTCAAATGAGGAGGAAG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATGCCACTTTACTTCCTGTGGCTGCAAGAAAAACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATTTTTCCAAAGTTTCCAAAATGATGCGCAGATA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATAACACTCCCATAAGAGTGTTGAGTAGTGTCGGTAGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TAGTCAAGATGGCAAGTTCACTGTAAATTTCAGA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG

>NC_014533|6|7|846857-849039|PILER-CR
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CCTTATTATTTGGGGGACGGAAGTAACTTTATGT
GTTTCCATTGTGTTAGTTTTCTCCTAAGAGAAAAG	CTTATGAACAGCTTGCTCAACGTGCTGGTCTGATTTAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TGGTGCTGAATTAGCCGCATCGTTTTCGGGCGGGATT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	GGATGAAAAAATCGAACGAGCATTTGAATTATACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CCCCTTCAATATGCAGATGTTGAAGTTCAAGGACAGGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	AACATGGGAAACCTGGCAAGGTTTTGTAGCAATAAGGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CAGCGACGAAAAATGGCAAAAACTAGACGAATAAAATG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGCAATTCCTAGGGATAGCAGTAGCTGTACTATT
GTTTCCCTTCTGTTAGTTTTCTCCTAAGAGAAAAG	CTTTAGCGCAGAACTTTGGTTTCAACCAAGGAACAAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATATAAACCAATTCACGAGGGCCATTAGAAGA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTTAAAAATTATCTAATAGACTATGTAGGGAAGGTAAAATC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTCGGTTAAACACTGAACGTGTCAATCGGGATCTAAC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ACTCCAACTATGAGGAAATAATCTCGCCCTATCTTGAGACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TCTACTTATTCAACGAGATCTTTGTTGACCCATATCTTC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATCGTTCAGAAATCTTTTACAATATCAACACAAAC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TTTTATGTATTTTTTGGGGGGGAGGCTGATCTTTGAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGTTACTGGTTTTCTCAAGAATCAGTAGATGATG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CAGTGAAGCAGATAAACAGCTTGTTTATCGTCAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CATCAAAAAGATAGCCAGTTGCTTGAATGGCACGCTAAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATCCTGATGTATTTTCTTGCGGGGTGCATTTTCAATGCA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TGTTATAAATACAAACGGACGGGTTACATTTGAAACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TCGTGGTACCAGTTATAACCCTGCCCGGGTTCAATA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGGTGACGACGGTATCGATATTATCGATGCTACGC
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	GAGTATCGAAACGGAGGGATGGCATCAGTCACACAA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	CGTTTAATGCAAATTTCCCAAGCTACTGCACCCAG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ACGTACGATAATAGAATCCTCAAATGAGGAGGAAG
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATGCCACTTTACTTCCTGTGGCTGCAAGAAAAACA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	ATTTTTCCAAAGTTTCCAAAATGATGCGCAGATA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TATAACACTCCCATAAGAGTGTTGAGTAGTGTCGGTAGCT
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG	TAGTCAAGATGGCAAGTTCACTGTAAATTTCAGA
GTTTCCATTCTGTTAGTTTTCTCCTAAGAGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014533.1\|WP_013334931.1\|852889_853924_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_014533.1\|WP_049802761.1\|852548_852743_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334742.1\|842960_843257_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334754.1\|859249_859549_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334755.1\|859545_859788_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334748.1\|850899_852387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
NC_014533.1\|WP_013334753.1\|858836_859196_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_157871991.1\|849302_850811_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_014533.1\|WP_013334738.1\|835514_836543_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|274210
NC_014533.1\|WP_013334750.1\|853975_857767_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334751.1\|857796_858072_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334744.1\|843885_844194_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334752.1\|858447_858837_-\|HEPN-domain-containing-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334737.1\|835035_835515_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_014533.1\|WP_013334740.1\|837710_840611_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|378863
NC_014533.1\|WP_013334739.1\|836554_837718_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_014533.1\|WP_013334745.1\|844221_844512_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_014533.1\|WP_013334743.1\|843249_843786_-\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334741.1\|842241_842775_+\|hypothetical-protein	unknown	unknown	unknown
NC_014533.1\|WP_013334746.1\|844537_846553_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633

Protein	Function_ID	Function_description	E-value
NC_014533.1\|WP_013334931.1\|852889_853924_-\|IS701-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.49521e-08
NC_014533.1\|WP_013334738.1\|835514_836543_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.56768e-24
NC_014533.1\|WP_013334748.1\|850899_852387_-\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00548227
NC_014533.1\|WP_013334740.1\|837710_840611_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|378863	pfam12469, DUF3692, CRISPR-associated protein. This domain family is found in bacteria and archaea, and is typically between 101 and 138 amino acids in length. The proteins in this family are frequently annotated as CRISPR-associated proteins however there is little accompanying literature to confirm this.	9.89964e-39
NC_014533.1\|WP_013334739.1\|836554_837718_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.05392e-64
NC_014533.1\|WP_013334746.1\|844537_846553_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.5573e-118
NC_014533.1\|WP_157871991.1\|849302_850811_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.4116e-07
NC_014533.1\|WP_013334745.1\|844221_844512_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.71866e-25

>NC_014533.1|WP_013334746.1|844537_846553_-|CRISPR-associated-endonuclease-Cas1
MQFPLNELYYAWEQVRRGSPSPGIDGITTDLFAGVKKDELIRLQQELIEEIYQPYPARGFYLPKNNGDKRLLGIPAVRDRVVQRWLLEDLYLPLEEVFTDCSYAYRPGRGIQMAVKHLYYYYQIQPKWIIKSDIRSFFDSLNWSILLSILEHLKLDPIIQQLVEQQLKSGIVLKGRYFPRNQGVLQGAVLSGALANLYLSEFDRKCLEKGINLVRYGDDFVAACQSLGEAERTLNLITQWLERIYLQLHPKKTEIYAPDQEFTFLGYLFKKGQVYAPLPPEPRKKGYPLDPSGMPRRPRPIYIHSFLSQPPKICSLKPKTSTQPKILTNPKHYFVDTMTTLYITDQGSYLKAQGYQFHIFYQRELRCKIPVNQVSHIVLFGCCNITHGAVRLALTRRIPLLYLSQRGRYFGRLETEGQAKVEYLSQQVKRAENPEFTRLQAENIVRAKLNNSRVLLMRLNRRRSNSSVKQAIANLEKLRDNLPLANSMDELRGYEGKAATVYFQALGSLFQAPFTFEKRSKRPPTDPVNSLLSLGYTLLSQNMHSFVEAMGLHTHFGNLHVPRNNHPALVSDLIEEFRAPLVDSLVVYLVNKKIFTPEDFTPPDGRNGVYLHPDSLKKFLKHWEEKLHSEMTHPYTQYKVSMRRCLELQVREYIASLMGDTDGYRPMLWTK
>NC_014533.1|WP_013334745.1|844221_844512_-|CRISPR-associated-endonuclease-Cas2
MTNKTLYLVCYDIVQDSRRNRVSKLLEAYGCRVQKSVFEILAAKSQYDKLKQKLEKMLNLDEDQLRFYIIPEHSRSKTLILGIQPDFYVDDTAFII
>NC_014533.1|WP_013334744.1|843885_844194_-|hypothetical-protein
MGVSTKKQMKQERAPPSIALFSLQFTHKAQKQLKSLSPQVRQQYQKAFHLLSTQGTHYRSLRTHRYQQKKGTIWGSSASMFLRFYWEYQDSSVILILFLGSH
>NC_014533.1|WP_013334743.1|843249_843786_-|hypothetical-protein
MYQQQTSSIELYSSDYRQALSDFGVVSLIEKLEELTKTQWQRPEIEQLARLLIQQLINTLSYDWIDSYLNVIEKGQGHIISHLLSGNQYLPIPWDTPSFVLDAAKPMYAVGTVVRWRTFDEPELTDWGIVMGRFYGYAPENGRWMWCYLILLDIDAPSARWCVLDTAWEQDLERFEDE
>NC_014533.1|WP_013334742.1|842960_843257_-|hypothetical-protein
MSKQKPLRYRERKLLRLYAHCELSMTPQAFYGKWDVNYEQIAEICHRSLSTVRGWFRQGENYRSPNSSDLRHLAMMDFIWQEFEAIPDELWQKLCNSD
>NC_014533.1|WP_013334741.1|842241_842775_+|hypothetical-protein
MIDKIKYIPDIFRYINTITVIIAAVTAVILWVRGILPVLLRLGNGLAKGKIAIFAKGDNLTSLIELLKSSGLFSEKNFIRIIDIGDFPKAKKANLYLIFFPNWNNMDSIKEIMNHKNNGIPLIVYAPPQNKIIQDQRAIPSDIMAKLNEDGNTIVTNFKGRLLNDIIGSLITGNYEK
>NC_014533.1|WP_013334740.1|837710_840611_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSKSYWEAKIRGIIYPFSLTKIQELIGQTNENQGYWKKSNLVLSQSTLDPNIITLAAEIAHASDRTVLNSLSISLENNNDFKVSHLLSGDSLNLSLSYSNYQKLLTSAASQQPLSHSSSENTNTIELEEIKELYWWLWRCLPEIICQQLGNQDNFLLPASLILPDASIWSYASITSAIAGALVGYSPSQQPEKTSNQLQTPYLATFSFTPIQEIIKASRKMRDFWAGSWVLHYLSAKVCWKLAQIYGADCLIYPSLFQQPLIDHWLRNKWPNFSHWIDKPTEKAILTAGFPNVIVILLPSDKVPSAMQTARETVIQEWLVLGKKVFKELENRRWTRELSENSPTWQEWLRYQWQTYWTALPINNKVDPLTWQIKENSEAFQQWQDELNRICQLNEENKLFNLKEHQFIQAVAQEKPDLRVNIGSWWCYLFDQLRLTAGSVKNSRNWCIPSSFYPRSTISGLGSVVYPQPQDYRQRVTEGDTRQYWQEQGGLFDGNEQLNATEVLKRGLHRILPELLFNDPNKKIPYYYPDLSSGVAGWLKSYPDRESNFIKACEAVKAKFDWTYRKRHSNDKRKPLEFPALLPWGIPWIDEDSRRKTWPNPRLLNAGWLIDDFPLDTDESLQIQKDEAAKLRNCLSKYFNQGNNPTDWYVIATGDGDGMSKWLKGDKLNNYADYMFLNQSILNNESINTAIQEISEIKKRMGPSTHNALSRALLDFSNRLVPYLTEERYAGRLIYSGGDDVLAYTNLWEWDNWLWDIRECFRGKEDSRGEFNHEGNYWKRKNDDSRPLFTMGKNATVSFGVVIAHHSVPLAIALENLWDAEKKAKNYQHQDKKKDAVQVRVLFGNGNKLQALAQFDVFYHWKQLIELELTKPIEPSLFEMAAQLWEQHPAPCVNAIKPWTIAFCERREGLQGEDKKSFQNQLENTLTAIYNNTPEPPDSEIKNWLKLAAFVLRNRNIKPIQGGNNE
>NC_014533.1|WP_013334739.1|836554_837718_-|CRISPR-associated-protein-Cmr3
MNNLKWYRITPLDVLLFRDAKPFSPGERAWAGSIFPPPGHAIAGAIRDLIQSNITIKLTGPFLTYKDQLYFPFPFSYDREHLCKRENNTAVPIPVVPLNWDNLHPLHSLLETDQNLPQPLVFESKHPFNDKLEGQYSAYLDYETILEYLKTSQISVEKWQKNRIKDNESPQPWKIETRPHNTITQGTRQVLEEDGYFVENTIRLQDGWSLAVGIKAKSEDENLKLTDNSQIIRLGGEGHRAILESCPQLGEQWQELEKISQGNQKKAGKKIAYLVTPGVFERRQRNNHPHCKPSPWEWTTAYPNNPTQEKGYLVSFATDKPLVISNRMRFGDNISTPAPQVYAAPAGTVYYLESNSEIILYQDSNASKQIQRWRDLGYSELLWISYQ
>NC_014533.1|WP_013334738.1|835514_836543_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTQLNCVYLYLYSPLHTGGTTQEGNLVGIARESHTNLPYIPSSTIRGRLRASIEDKDLRVQLFGPELKDIAPPSNENLSNTSEEVSNNSEADQTSNSNNLEQGDIWIGDGSLLWFPLASLSHGVVWITCPRLLQRWKRYYPSSLSIPESGYYTNLNTKNPIYLRDAVVKDGLNKWDDCNKFIPKDNVNTEIDSVLLLPNQHCATLIQMGLWRQVKIKLDEHKSVEGGFRYEEAIPSDTLMYFPWGLTAQVRDADEIELENENSKKQKELHVKRIKLAQKYQIKSQKDIEIVNKLFNKHLEKKNQQILQIGGQESLGRGFVKQWIWNPKNPSEQTQSQPAEVK
>NC_014533.1|WP_013334737.1|835035_835515_-|hypothetical-protein
MIVKIFDPKVLSEPVYDALSQLRQKYDKALASNIINKEQRDSHLKEQKNQAVELYTYLATWGLMRLKAEEFALNKKNLNSNSCIKERVETSQYGKLEVVREFFECLKKLIPDSENKLELRNLAKMDVDEYLGIMGLGLAIAQEFSFWATAIYYDIKGDE
>NC_014533.1|WP_157871991.1|849302_850811_-|tetratricopeptide-repeat-protein
MSLTNLNTSKELFQRLNINLDEVPLEYLADYTAITYFLTIEESSPSYVSNLEKVRKYLESFYHLCQIKDWQRSLIVLQIEPEAKIQEELHNLLGIWGYHEQQKMIYQDLLYKVNPQCDATCLTGLGNVYDTQGNYSLAIEYHTKQLELAQEIGDDSGEWIALVGLGNVQKALGHFQDSLTYFHQALDIARQIKDIRGEVIALGSLGNIYMGLNNNDESKEYTENCLTLAQQHQFSLFEARAAIILGNISRDENNVQEALNWYHHGLEIAQELDDIAVIIDAMRSLGDSYEELGNSLEALEWLHKSLEIAQEFGDKAIEAESWRGLGNAYATLGNLEQAIFYYQKRLDFLELTEDKANIASNLQGLALAYDKLNRLAEAIKYEEKRLKILTELEDWEKVADSHAYLGYAHLGLNNYYEALANLMAALALQKEQGNQKGKANTLYNLAELMAHLDQITPALQLCQEGLTVAQECDLELVEEFKELQELIEAYSRQLIEEEDDEV
>NC_014533.1|WP_013334748.1|850899_852387_-|hypothetical-protein
MPRSARLHKERKAQVIEALKRNGFLTQGDLAAHLEVALSTINNFINSKPVYITKFEEICHALNLDKQAMLKPLNEEVNSNLASQEEIEKTSLFSFIAYDDYWVGRKDLITSLTEKLQGAFRFLFILGLTGIGKTALAERIILERQKTSSLTKSYDFKRVNFEALGNATDFMTVAIQWLEAWEIQVPSPQRNPEQVIWHLTQYLQHNTVLLLFDSFENLLGGNEEEGWGNLADNWWEKFFLSLLSAQSCQTRIIITSQDLPLSLVEQRYNQYWHCHLLTGLDENEQENLWEIIGFNIDDNLEEKALLMRLGKAYQGHPLVLRVISGEIWESFGGNVKAYWEDVKSKIETVETALAEAENEAQKQMGSEDNWKLHKLTRKVRLEVNKQRLTSVFNRLEAQSTDAYYLICAASVYRVPVQVQGWLMQLAVLIKRIENQFCNEERQEMALEELCYRFLVEESVNPNNQRVLGLHHLIRSVALEHYQQLITKLKQQSKTA
>NC_014533.1|WP_049802761.1|852548_852743_-|hypothetical-protein
MWQQWVYENPHLMIELANAAKGKTLTDKFATSDISQARALAEILNENPQYSHINLGIKPNDPTL
>NC_014533.1|WP_013334931.1|852889_853924_-|IS701-family-transposase
MRQQTKPSTAKCDLDIYTNYLIAEPKWSGCSRLGQIMDISHDSANRFLLRENYEPKDLFDEVKKFINLTGGTLSADDTIIEKLYSNPSSCKLIGYYWSGKHKKVIKGINLITVYYTDLNGNSVPINYRLYDKEEGKTKNEYLKEMIEEVLEWGIVPKTITTDSWYSSKNNLKFFKDKKLDFLVGIAKNRQVKVLGGKFCKVEQLEIPEDGLKVYLKEFGWVKVFQRVFKNEKPRYYLIYQTEESESDNKLLTRNQLRYLCSIHWGIECYHRALKQLCGLNKFLVRTSQSIATHIFCSLRAFCQLELMRIQETIFTWYEVQRELYLKVAREFILKRLEEKNTLAA
>NC_014533.1|WP_013334750.1|853975_857767_-|hypothetical-protein
MVAQVQKFQTELEVPFFDTLTQQDLDSKPITIKNSVAAYLFEGVNFSLGRIYNKTKPEQLRSFEGKTLEFANGDKFYFADRQVRNEIYPVDSDGAAYGSIPFTGCQTFHEVKAAKILIIDDQTGDNTIGLDKETAKKLVGDCFGKIDYKVHAAIGGKYYTPFQFRLGSRTQDKDPFARIAKGTLAPANLKKVGSGYDLIMPTSAFKGRKGEDNQAIKPGEYELTLGLGLKTHAYYGEHSLGPQVLVGYPSSCAAFVEQAQKRLEELTLIASDPIKLAHDYLEVTERRYRYQIENQTNFTEEFDGEELSSDEIDTMLDKAAAEENDEIVYNLLKADVEGHYQLLDHPKIVDALNKHLQNQYKEIATGRFIKFKGALLQPSLELKDNEFCDPNLPDGAEVIATRSPFVNSNNFIALTNRHIPELMPYKGVAWMNPVTAANYLQGDFDGDRIAYALSNQDPQIGILAEEVKEKQLPSNRYADVVKKAKVPYQGSFEEIALSAKDNQIGLIANQVMKVVALEIETTMLPLNDQEKYLKTVSAHFNELLAEDYSLPSELETLKPQIEEITKWSSALASSNSNSQSVEVKLTTLKKFLHELVGLLGNELQVAVDGPKSALRPDQGILKTIKELTDYRSVGWLEDRKSEEVYRERPMNSNTYSPIDLLVRPVNEQFCKNSLEARPAHQFRNLFEDISYSETQKEFIDQVRVEYNKRQSQAHQLKAELSKSLGPTMNLRTRKGNMIEVVDLLNGSNHPQTYSLDKMTIRVRENNNKKRPEKYIILGQVPGQLNDYGKPSYKRIGYLSINSERQYGQFIEDLIKKNKGSYADLGTLPVEIIPGVTLEQVRAAFKELKQYAEQIRDRIPDSERLSYAAAMWDLCNARTNKENSFKKASAAFAIFAPEIQSRLSSLQFKSLEVSGIKSPSNEHQGRIFNQEKLPLEIGFEANPDDPNHNQRVVIVEGKKLGRFAGESPQLPVGTKAQGWITTPPGAGVTATLADGTSFRIGVLKNYNYSMSSFQHDSRTLGIDFVKNPKGEVEPAVKLDGKILGRITDKQAQQTLMRKGLLKKGTQLTAILDRDPPSIARIEIDATTIKYPQVITPNKALVTRSESLPTLLAREAYQWEINGKMLNKDTLVLAVDSCKTEQTEGWFSKQEVPLTLDFEESQKFSSTKYAIYKVQIELIPDITFSKLVGKFGQPMDTESFFKALQGKNIDNNNTNYNWSRYPQPGQAAYEVSTQGDKRLVPWLRGLMTSEPLSALINYRRYALTE
>NC_014533.1|WP_013334751.1|857796_858072_+|hypothetical-protein
MKQNLPEDVLEFMRDGLSDEEAISEGLIDPINLYQPKREREPDPVITRPEWGGLEQDEWEVTMATEDQIVYIDLDEVIELYQAEQAKKAKK
>NC_014533.1|WP_013334752.1|858447_858837_-|HEPN-domain-containing-protein
MTFNWEDYLTLANKLSEETLTSAIQEAQFRSAISRAYYAAFNQAKTFLENTDKILIPRVNIHKYVINQFQNSPDRRRQKIGNRLLVLRTYRNQADYDSTITVRDETCQEALTLAKRIILAFKKIDEMEE
>NC_014533.1|WP_013334753.1|858836_859196_-|hypothetical-protein
MFKSFGQRAKSFDSELNSLLAFYQIRQEEEVIDYLEHHQHLLFILEEGKKIIVDNFANSTAYLEVVTDPETEESQLAIYINRQEKEVEVALDRIEKLYDEWLGKYNAEIRSQILVRYNY
>NC_014533.1|WP_013334754.1|859249_859549_-|hypothetical-protein
MTRLTQYEDFDILELENSIEKAYNAQNTAYCDREIQLDKSENDYGLYHVWYGRQCLGTFCRSFDDDCWLATPFYRNGCFADSFTPPAFETHQQAQDYLD
>NC_014533.1|WP_013334755.1|859545_859788_-|hypothetical-protein
MTQNTEAVTTLHADELTVGDVIRHFTGDLWQVATEPIYTRAGMTFKVYDLSVNTIETQTVSFHPQWRFELVKYVSVEVAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014533_1	1.1\|21079\|36\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21079-21114	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21079-21114	0	1.0
NC_014533_1	1.2\|21151\|44\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21151-21194	44	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21151-21194	0	1.0
NC_014533_1	1.3\|21231\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21231-21268	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21231-21268	0	1.0
NC_014533_1	1.4\|21305\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21305-21342	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21305-21342	0	1.0
NC_014533_1	1.5\|21379\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21379-21416	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21379-21416	0	1.0
NC_014533_1	1.6\|21453\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21453-21490	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21453-21490	0	1.0
NC_014533_1	1.7\|21527\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21527-21568	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21527-21568	0	1.0
NC_014533_1	1.8\|21605\|40\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21605-21644	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21605-21644	0	1.0
NC_014533_1	1.9\|21681\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21681-21722	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21681-21722	0	1.0
NC_014533_1	1.10\|21759\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21759-21795	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21759-21795	0	1.0
NC_014533_1	1.11\|21832\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21832-21873	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21832-21873	0	1.0
NC_014533_1	1.12\|21910\|36\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21910-21945	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21910-21945	0	1.0
NC_014533_1	1.13\|21982\|43\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	21982-22024	43	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	21982-22024	0	1.0
NC_014533_1	1.14\|22061\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22061-22098	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22061-22098	0	1.0
NC_014533_1	1.15\|22135\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22135-22172	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22135-22172	0	1.0
NC_014533_1	1.16\|22209\|40\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22209-22248	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22209-22248	0	1.0
NC_014533_1	1.17\|22285\|36\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22285-22320	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22285-22320	0	1.0
NC_014533_1	1.18\|22357\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22357-22393	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22357-22393	0	1.0
NC_014533_1	1.19\|22430\|41\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22430-22470	41	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22430-22470	0	1.0
NC_014533_1	1.20\|22507\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22507-22544	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22507-22544	0	1.0
NC_014533_1	1.21\|22581\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22581-22617	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22581-22617	0	1.0
NC_014533_1	1.22\|22654\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22654-22690	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22654-22690	0	1.0
NC_014533_1	1.23\|22727\|40\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22727-22766	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22727-22766	0	1.0
NC_014533_1	1.24\|22803\|39\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22803-22841	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22803-22841	0	1.0
NC_014533_1	1.25\|22878\|41\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	22878-22918	41	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22878-22918	0	1.0
NC_014533_1	1.26\|22955\|38\|NC_014533\|CRISPRCasFinder,CRT	22955-22992	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	22955-22992	0	1.0
NC_014533_1	1.27\|23029\|35\|NC_014533\|CRISPRCasFinder,CRT	23029-23063	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	23029-23063	0	1.0
NC_014533_1	1.28\|23100\|39\|NC_014533\|CRISPRCasFinder,CRT	23100-23138	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	23100-23138	0	1.0
NC_014533_1	1.29\|23175\|39\|NC_014533\|CRISPRCasFinder,CRT	23175-23213	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	23175-23213	0	1.0
NC_014533_2	2.1\|44717\|38\|NC_014533\|CRT	44717-44754	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	44717-44754	0	1.0
NC_014533_2	2.2\|44792\|42\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	44792-44833	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	44792-44833	0	1.0
NC_014533_2	2.3\|44871\|37\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	44871-44907	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	44871-44907	0	1.0
NC_014533_2	2.4\|44945\|36\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	44945-44980	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	44945-44980	0	1.0
NC_014533_2	2.5\|45018\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45018-45051	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45018-45051	0	1.0
NC_014533_2	2.6\|45089\|35\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45089-45123	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45089-45123	0	1.0
NC_014533_2	2.7\|45161\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45161-45194	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45161-45194	0	1.0
NC_014533_2	2.8\|45232\|36\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45232-45267	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45232-45267	0	1.0
NC_014533_2	2.9\|45305\|36\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45305-45340	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45305-45340	0	1.0
NC_014533_2	2.10\|45378\|36\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45378-45413	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45378-45413	0	1.0
NC_014533_2	2.11\|45451\|37\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45451-45487	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45451-45487	0	1.0
NC_014533_2	2.12\|45525\|35\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45525-45559	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45525-45559	0	1.0
NC_014533_2	2.13\|45597\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45597-45630	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45597-45630	0	1.0
NC_014533_2	2.14\|45668\|33\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45668-45700	33	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45668-45700	0	1.0
NC_014533_2	2.15\|45738\|35\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45738-45772	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45738-45772	0	1.0
NC_014533_2	2.16\|45810\|35\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45810-45844	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45810-45844	0	1.0
NC_014533_2	2.17\|45882\|37\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45882-45918	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45882-45918	0	1.0
NC_014533_2	2.18\|45956\|33\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45956-45988	33	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	45956-45988	0	1.0
NC_014533_2	2.19\|46026\|37\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	46026-46062	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	46026-46062	0	1.0
NC_014533_2	2.20\|46100\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	46100-46133	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	46100-46133	0	1.0
NC_014533_2	2.21\|46171\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	46171-46204	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	46171-46204	0	1.0
NC_014533_2	2.22\|46242\|35\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	46242-46276	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	46242-46276	0	1.0
NC_014533_2	2.23\|46314\|36\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	46314-46349	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	46314-46349	0	1.0
NC_014533_2	2.24\|46387\|38\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	46387-46424	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	46387-46424	0	1.0
NC_014533_3	3.1\|208860\|43\|NC_014533\|PILER-CR	208860-208902	43	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	208836-208878	0	1.0
NC_014533_3	3.2\|208951\|35\|NC_014533\|PILER-CR	208951-208985	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	208927-208961	0	1.0
NC_014533_4	4.1\|487715\|39\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	487715-487753	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	487715-487753	0	1.0
NC_014533_4	4.2\|487790\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	487790-487831	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	487790-487831	0	1.0
NC_014533_4	4.3\|487868\|41\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	487868-487908	41	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	487868-487908	0	1.0
NC_014533_4	4.4\|487945\|36\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	487945-487980	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	487945-487980	0	1.0
NC_014533_4	4.5\|488017\|39\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488017-488055	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488017-488055	0	1.0
NC_014533_4	4.6\|488092\|36\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488092-488127	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488092-488127	0	1.0
NC_014533_4	4.7\|488164\|39\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488164-488202	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488164-488202	0	1.0
NC_014533_4	4.8\|488239\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488239-488275	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488239-488275	0	1.0
NC_014533_4	4.9\|488312\|40\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488312-488351	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488312-488351	0	1.0
NC_014533_4	4.10\|488388\|36\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488388-488423	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488388-488423	0	1.0
NC_014533_4	4.11\|488460\|40\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488460-488499	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488460-488499	0	1.0
NC_014533_4	4.12\|488536\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488536-488577	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488536-488577	0	1.0
NC_014533_4	4.13\|488614\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	488614-488655	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488614-488655	0	1.0
NC_014533_4	4.14\|488692\|36\|NC_014533\|CRISPRCasFinder,CRT	488692-488727	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488692-488727	0	1.0
NC_014533_4	4.15\|488764\|46\|NC_014533\|CRISPRCasFinder,CRT	488764-488809	46	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488764-488809	0	1.0
NC_014533_4	4.16\|488846\|40\|NC_014533\|CRISPRCasFinder,CRT	488846-488885	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488846-488885	0	1.0
NC_014533_4	4.17\|488922\|36\|NC_014533\|CRISPRCasFinder,CRT	488922-488957	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488922-488957	0	1.0
NC_014533_4	4.18\|488764\|45\|NC_014533\|PILER-CR	488764-488808	45	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488764-488808	0	1.0
NC_014533_4	4.19\|488846\|39\|NC_014533\|PILER-CR	488846-488884	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488846-488884	0	1.0
NC_014533_4	4.20\|488922\|35\|NC_014533\|PILER-CR	488922-488956	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	488922-488956	0	1.0
NC_014533_5	5.1\|841078\|42\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841078-841119	42	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841078-841119	0	1.0
NC_014533_5	5.2\|841156\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841156-841193	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841156-841193	0	1.0
NC_014533_5	5.3\|841230\|35\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841230-841264	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841230-841264	0	1.0
NC_014533_5	5.4\|841301\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841301-841338	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841301-841338	0	1.0
NC_014533_5	5.5\|841375\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841375-841411	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841375-841411	0	1.0
NC_014533_5	5.6\|841448\|39\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841448-841486	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841448-841486	0	1.0
NC_014533_5	5.7\|841523\|39\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841523-841561	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841523-841561	0	1.0
NC_014533_5	5.8\|841598\|35\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841598-841632	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841598-841632	0	1.0
NC_014533_5	5.9\|841669\|38\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841669-841706	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841669-841706	0	1.0
NC_014533_5	5.10\|841743\|41\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841743-841783	41	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841743-841783	0	1.0
NC_014533_5	5.11\|841820\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841820-841856	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841820-841856	0	1.0
NC_014533_5	5.12\|841893\|37\|NC_014533\|PILER-CR,CRISPRCasFinder,CRT	841893-841929	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	841893-841929	0	1.0
NC_014533_6	6.1\|846821\|36\|NC_014533\|CRISPRCasFinder,CRT	846821-846856	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	846821-846856	0	1.0
NC_014533_6	6.2\|846892\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	846892-846925	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	846892-846925	0	1.0
NC_014533_6	6.3\|846961\|38\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	846961-846998	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	846961-846998	0	1.0
NC_014533_6	6.4\|847034\|37\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847034-847070	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847034-847070	0	1.0
NC_014533_6	6.5\|847106\|35\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847106-847140	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847106-847140	0	1.0
NC_014533_6	6.6\|847176\|39\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847176-847214	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847176-847214	0	1.0
NC_014533_6	6.7\|847250\|39\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847250-847288	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847250-847288	0	1.0
NC_014533_6	6.8\|847324\|38\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847324-847361	38	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847324-847361	0	1.0
NC_014533_6	6.9\|847397\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847397-847430	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847397-847430	0	1.0
NC_014533_6	6.10\|847466\|37\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847466-847502	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847466-847502	0	1.0
NC_014533_6	6.11\|847538\|32\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847538-847569	32	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847538-847569	0	1.0
NC_014533_6	6.12\|847605\|41\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847605-847645	41	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847605-847645	0	1.0
NC_014533_6	6.13\|847681\|37\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847681-847717	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847681-847717	0	1.0
NC_014533_6	6.14\|847753\|41\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847753-847793	41	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847753-847793	0	1.0
NC_014533_6	6.15\|847829\|39\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847829-847867	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847829-847867	0	1.0
NC_014533_6	6.16\|847903\|35\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847903-847937	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847903-847937	0	1.0
NC_014533_6	6.17\|847973\|37\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	847973-848009	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	847973-848009	0	1.0
NC_014533_6	6.18\|848045\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848045-848078	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848045-848078	0	1.0
NC_014533_6	6.19\|848114\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848114-848147	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848114-848147	0	1.0
NC_014533_6	6.20\|848183\|39\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848183-848221	39	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848183-848221	0	1.0
NC_014533_6	6.21\|848257\|40\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848257-848296	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848257-848296	0	1.0
NC_014533_6	6.22\|848332\|37\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848332-848368	37	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848332-848368	0	1.0
NC_014533_6	6.23\|848404\|36\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848404-848439	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848404-848439	0	1.0
NC_014533_6	6.24\|848475\|35\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848475-848509	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848475-848509	0	1.0
NC_014533_6	6.25\|848545\|36\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848545-848580	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848545-848580	0	1.0
NC_014533_6	6.26\|848616\|35\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848616-848650	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848616-848650	0	1.0
NC_014533_6	6.27\|848686\|35\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848686-848720	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848686-848720	0	1.0
NC_014533_6	6.28\|848756\|36\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848756-848791	36	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848756-848791	0	1.0
NC_014533_6	6.29\|848827\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848827-848860	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848827-848860	0	1.0
NC_014533_6	6.30\|848896\|40\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848896-848935	40	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848896-848935	0	1.0
NC_014533_6	6.31\|848971\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	848971-849004	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	848971-849004	0	1.0
NC_014533_3	3.2\|208951\|35\|NC_014533\|PILER-CR	208951-208985	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	209008-209042	3	0.914
NC_014533_3	3.2\|208951\|35\|NC_014533\|PILER-CR	208951-208985	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	208846-208880	7	0.8
NC_014533_2	2.7\|45161\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45161-45194	34	JX195166	Pectobacterium phage My1, complete genome	70825-70858	9	0.735
NC_014533_6	6.2\|846892\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	846892-846925	34	MN694142	Marine virus AFVG_250M416, complete genome	64614-64647	9	0.735
NC_014533_2	2.13\|45597\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45597-45630	34	NZ_CP024217	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9	3517-3550	10	0.706
NC_014533_2	2.13\|45597\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45597-45630	34	NZ_CP024209	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2	17155-17188	10	0.706
NC_014533_2	2.13\|45597\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45597-45630	34	NZ_CP040828	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-2, complete sequence	2106-2139	10	0.706
NC_014533_3	3.2\|208951\|35\|NC_014533\|PILER-CR	208951-208985	35	MN694517	Marine virus AFVG_250M306, complete genome	45080-45114	10	0.714
NC_014533_6	6.2\|846892\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	846892-846925	34	MN693786	Marine virus AFVG_250M1027, complete genome	63337-63370	10	0.706
NC_014533_6	6.2\|846892\|34\|NC_014533\|CRISPRCasFinder,CRT,PILER-CR	846892-846925	34	MN693811	Marine virus AFVG_250M463, complete genome	64417-64450	10	0.706
NC_014533_2	2.7\|45161\|34\|NC_014533\|CRT,PILER-CR,CRISPRCasFinder	45161-45194	34	NZ_CP031276	Staphylococcus xylosus strain 2 plasmid unnamed1, complete sequence	13456-13489	11	0.676

1. spacer 1.1|21079|36|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aaggatttggtatcgatttctcatgtcctcaatagg	CRISPR spacer
aaggatttggtatcgatttctcatgtcctcaatagg	Protospacer
************************************

2. spacer 1.2|21151|44|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tcaattatttacttacattcacttgtatctatattatgactgaa	CRISPR spacer
tcaattatttacttacattcacttgtatctatattatgactgaa	Protospacer
********************************************

3. spacer 1.3|21231|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tatattttcagcacctggcaatacctttaagttagcag	CRISPR spacer
tatattttcagcacctggcaatacctttaagttagcag	Protospacer
**************************************

4. spacer 1.4|21305|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aaatctactctaatttctgtggggattggagtcactat	CRISPR spacer
aaatctactctaatttctgtggggattggagtcactat	Protospacer
**************************************

5. spacer 1.5|21379|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgatcacctcgctgttcggggactccgccaaagacctc	CRISPR spacer
cgatcacctcgctgttcggggactccgccaaagacctc	Protospacer
**************************************

6. spacer 1.6|21453|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aggttcgagaagcccttctcctccatccagagggcgta	CRISPR spacer
aggttcgagaagcccttctcctccatccagagggcgta	Protospacer
**************************************

7. spacer 1.7|21527|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aggaactcggtcgcccccagctcgtccctgatctcgaaccac	CRISPR spacer
aggaactcggtcgcccccagctcgtccctgatctcgaaccac	Protospacer
******************************************

8. spacer 1.8|21605|40|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ccgatggcggcatcgtgatgcgggaggtcggcgggtcgaa	CRISPR spacer
ccgatggcggcatcgtgatgcgggaggtcggcgggtcgaa	Protospacer
****************************************

9. spacer 1.9|21681|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gcttaattataagctttcgagtcaggttaacttgatatagac	CRISPR spacer
gcttaattataagctttcgagtcaggttaacttgatatagac	Protospacer
******************************************

10. spacer 1.10|21759|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gcagtttgaactccagtcaccccaactacctggaata	CRISPR spacer
gcagtttgaactccagtcaccccaactacctggaata	Protospacer
*************************************

11. spacer 1.11|21832|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gttgcgcacggtgaccgggaccagctcggcggcccgttgccc	CRISPR spacer
gttgcgcacggtgaccgggaccagctcggcggcccgttgccc	Protospacer
******************************************

12. spacer 1.12|21910|36|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gagtacctctgttactatggcaattcttccttttct	CRISPR spacer
gagtacctctgttactatggcaattcttccttttct	Protospacer
************************************

13. spacer 1.13|21982|43|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aagcattttttccctctaccaccttaagaacaccacttgtgta	CRISPR spacer
aagcattttttccctctaccaccttaagaacaccacttgtgta	Protospacer
*******************************************

14. spacer 1.14|22061|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tatgtcacccatgccaattcaccctattattacttgtg	CRISPR spacer
tatgtcacccatgccaattcaccctattattacttgtg	Protospacer
**************************************

15. spacer 1.15|22135|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aggttctcctaggaattcattctttttaaaattattta	CRISPR spacer
aggttctcctaggaattcattctttttaaaattattta	Protospacer
**************************************

16. spacer 1.16|22209|40|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ctttctgccttgccagagtaaaagtgtgtactctttttct	CRISPR spacer
ctttctgccttgccagagtaaaagtgtgtactctttttct	Protospacer
****************************************

17. spacer 1.17|22285|36|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tttctgtaatcctttccccgccgcctgtccaacatc	CRISPR spacer
tttctgtaatcctttccccgccgcctgtccaacatc	Protospacer
************************************

18. spacer 1.18|22357|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgccgccgacgtgaacgaacgcgcgatcttcacggag	CRISPR spacer
cgccgccgacgtgaacgaacgcgcgatcttcacggag	Protospacer
*************************************

19. spacer 1.19|22430|41|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgatctttacattcgcggttgaatgacggcagaaaaactca	CRISPR spacer
cgatctttacattcgcggttgaatgacggcagaaaaactca	Protospacer
*****************************************

20. spacer 1.20|22507|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tggaggaaatagacagcgatggaaggcggtataaaatt	CRISPR spacer
tggaggaaatagacagcgatggaaggcggtataaaatt	Protospacer
**************************************

21. spacer 1.21|22581|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

attgaatcgctagaacgcccttcctgtctccattctc	CRISPR spacer
attgaatcgctagaacgcccttcctgtctccattctc	Protospacer
*************************************

22. spacer 1.22|22654|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gtccttaaacgacttaaggactttagccagttcttac	CRISPR spacer
gtccttaaacgacttaaggactttagccagttcttac	Protospacer
*************************************

23. spacer 1.23|22727|40|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tttcgttttacttattcatacgatatttgcaacaatatcc	CRISPR spacer
tttcgttttacttattcatacgatatttgcaacaatatcc	Protospacer
****************************************

24. spacer 1.24|22803|39|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aataattaaaacattttgatgctcgttacaaagagctaa	CRISPR spacer
aataattaaaacattttgatgctcgttacaaagagctaa	Protospacer
***************************************

25. spacer 1.25|22878|41|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aactccttcgcgcgctttgccgtgccgcccgtcgccgcgtt	CRISPR spacer
aactccttcgcgcgctttgccgtgccgcccgtcgccgcgtt	Protospacer
*****************************************

26. spacer 1.26|22955|38|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gcattcttaacaaatgctctaattttctgcaatctgat	CRISPR spacer
gcattcttaacaaatgctctaattttctgcaatctgat	Protospacer
**************************************

27. spacer 1.27|23029|35|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aagtaatcatctggcttttgattatggaatctccg	CRISPR spacer
aagtaatcatctggcttttgattatggaatctccg	Protospacer
***********************************

28. spacer 1.28|23100|39|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cggggtttacaaaaaggttggcatttaccttgatccgcc	CRISPR spacer
cggggtttacaaaaaggttggcatttaccttgatccgcc	Protospacer
***************************************

29. spacer 1.29|23175|39|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgcgagcgaccgaggacatcggccagcagatccgggc	CRISPR spacer
ggcgcgagcgaccgaggacatcggccagcagatccgggc	Protospacer
***************************************

30. spacer 2.1|44717|38|NC_014533|CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tgaattcttgttgtgttctgttggagatattaaagaaa	CRISPR spacer
tgaattcttgttgtgttctgttggagatattaaagaaa	Protospacer
**************************************

31. spacer 2.2|44792|42|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tagaaagggctttgttaaggcttgaaaaaatagaaaattttt	CRISPR spacer
tagaaagggctttgttaaggcttgaaaaaatagaaaattttt	Protospacer
******************************************

32. spacer 2.3|44871|37|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aacggcaaacttaaaactgttgttgacaacaatgagt	CRISPR spacer
aacggcaaacttaaaactgttgttgacaacaatgagt	Protospacer
*************************************

33. spacer 2.4|44945|36|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

agtcgatattgaaacaaatatcaatcgattagcgtt	CRISPR spacer
agtcgatattgaaacaaatatcaatcgattagcgtt	Protospacer
************************************

34. spacer 2.5|45018|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cctaattatcctggcaaaatggacggaagtctta	CRISPR spacer
cctaattatcctggcaaaatggacggaagtctta	Protospacer
**********************************

35. spacer 2.6|45089|35|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tttccattaaccgtcctcgatgggaagaactttat	CRISPR spacer
tttccattaaccgtcctcgatgggaagaactttat	Protospacer
***********************************

36. spacer 2.7|45161|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gtatcgtcctttgttttaacatttaacttatagc	CRISPR spacer
gtatcgtcctttgttttaacatttaacttatagc	Protospacer
**********************************

37. spacer 2.8|45232|36|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tgttgcatcttatctggttccgttggtttgttttgt	CRISPR spacer
tgttgcatcttatctggttccgttggtttgttttgt	Protospacer
************************************

38. spacer 2.9|45305|36|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

acaataagaattcagataattcagcgaaatatctat	CRISPR spacer
acaataagaattcagataattcagcgaaatatctat	Protospacer
************************************

39. spacer 2.10|45378|36|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gaaggatcaataggactaccaacattaaatttagaa	CRISPR spacer
gaaggatcaataggactaccaacattaaatttagaa	Protospacer
************************************

40. spacer 2.11|45451|37|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ctataggaggatcaggtgttaaaacaaaaattctcgg	CRISPR spacer
ctataggaggatcaggtgttaaaacaaaaattctcgg	Protospacer
*************************************

41. spacer 2.12|45525|35|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tttgactcttcttctttgtcttgacaaatatattt	CRISPR spacer
tttgactcttcttctttgtcttgacaaatatattt	Protospacer
***********************************

42. spacer 2.13|45597|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ccggacattgactataaggtaacacaattattat	CRISPR spacer
ccggacattgactataaggtaacacaattattat	Protospacer
**********************************

43. spacer 2.14|45668|33|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcatagctcaaaattcgtaagaacagtttc	CRISPR spacer
cgctcatagctcaaaattcgtaagaacagtttc	Protospacer
*********************************

44. spacer 2.15|45738|35|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

catcaattataaacaaatgatagacgattacttat	CRISPR spacer
catcaattataaacaaatgatagacgattacttat	Protospacer
***********************************

45. spacer 2.16|45810|35|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tacctatttctagtttagatatcaagttgttaaca	CRISPR spacer
tacctatttctagtttagatatcaagttgttaaca	Protospacer
***********************************

46. spacer 2.17|45882|37|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

atagatgaattaatactacgtgacagtattccgttaa	CRISPR spacer
atagatgaattaatactacgtgacagtattccgttaa	Protospacer
*************************************

47. spacer 2.18|45956|33|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

acaaatccgcagcataactacaccattttgtta	CRISPR spacer
acaaatccgcagcataactacaccattttgtta	Protospacer
*********************************

48. spacer 2.19|46026|37|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ccccgcgaaatggggctaaaaaagcctctaaagggtc	CRISPR spacer
ccccgcgaaatggggctaaaaaagcctctaaagggtc	Protospacer
*************************************

49. spacer 2.20|46100|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tggcaatccaaattcaggaccatttgaagctgga	CRISPR spacer
tggcaatccaaattcaggaccatttgaagctgga	Protospacer
**********************************

50. spacer 2.21|46171|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

taaacgattgtgttctagtttcaacggatacaat	CRISPR spacer
taaacgattgtgttctagtttcaacggatacaat	Protospacer
**********************************

51. spacer 2.22|46242|35|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cctgatcctcctatagaatggctaagatgtaaatt	CRISPR spacer
cctgatcctcctatagaatggctaagatgtaaatt	Protospacer
***********************************

52. spacer 2.23|46314|36|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

taacatctagtaataaaagtggcgttaatttattag	CRISPR spacer
taacatctagtaataaaagtggcgttaatttattag	Protospacer
************************************

53. spacer 2.24|46387|38|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttgcaagtttgtgttgtaaacgattgcacagtaacatc	CRISPR spacer
ttgcaagtttgtgttgtaaacgattgcacagtaacatc	Protospacer
**************************************

54. spacer 3.1|208860|43|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cacctaacctctatcagttctgactccaatggagatgggcagc	CRISPR spacer
cacctaacctctatcagttctgactccaatggagatgggcagc	Protospacer
*******************************************

55. spacer 3.2|208951|35|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ctgacactactgactccaatggagatgggctggcc	CRISPR spacer
ctgacactactgactccaatggagatgggctggcc	Protospacer
***********************************

56. spacer 4.1|487715|39|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gctatttggggggctgaatctcaagctcctcaatgatag	CRISPR spacer
gctatttggggggctgaatctcaagctcctcaatgatag	Protospacer
***************************************

57. spacer 4.2|487790|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gttttgccataacagataaactctttgaaaggaatcaagggg	CRISPR spacer
gttttgccataacagataaactctttgaaaggaatcaagggg	Protospacer
******************************************

58. spacer 4.3|487868|41|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttcagaacaaatttaatggtttaaaaaattcaatcatcaaa	CRISPR spacer
ttcagaacaaatttaatggtttaaaaaattcaatcatcaaa	Protospacer
*****************************************

59. spacer 4.4|487945|36|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aatatatgttaagcgagcttgcaacgcttatgaact	CRISPR spacer
aatatatgttaagcgagcttgcaacgcttatgaact	Protospacer
************************************

60. spacer 4.5|488017|39|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gtaattttcaggagggcttacacagagtttactaaccct	CRISPR spacer
gtaattttcaggagggcttacacagagtttactaaccct	Protospacer
***************************************

61. spacer 4.6|488092|36|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ctctaacagcgtcgccgatttcttgttgctgttctt	CRISPR spacer
ctctaacagcgtcgccgatttcttgttgctgttctt	Protospacer
************************************

62. spacer 4.7|488164|39|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

attatgatgtagccaaatgcggagctactttaacttgga	CRISPR spacer
attatgatgtagccaaatgcggagctactttaacttgga	Protospacer
***************************************

63. spacer 4.8|488239|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tagagccaaatcagcaatgataaagcatccatcacca	CRISPR spacer
tagagccaaatcagcaatgataaagcatccatcacca	Protospacer
*************************************

64. spacer 4.9|488312|40|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

accactcctagaggaaagtataaacaagacgacgatccct	CRISPR spacer
accactcctagaggaaagtataaacaagacgacgatccct	Protospacer
****************************************

65. spacer 4.10|488388|36|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttttaaaaaaaagtgcagtaaactaaagctattggt	CRISPR spacer
ttttaaaaaaaagtgcagtaaactaaagctattggt	Protospacer
************************************

66. spacer 4.11|488460|40|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ctgcatattcctcccacccacaacgaagcagaccagagtg	CRISPR spacer
ctgcatattcctcccacccacaacgaagcagaccagagtg	Protospacer
****************************************

67. spacer 4.12|488536|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aatctattagctaatcctcatgtaactgttgttatgattctc	CRISPR spacer
aatctattagctaatcctcatgtaactgttgttatgattctc	Protospacer
******************************************

68. spacer 4.13|488614|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tggtgacatcatctacaacaagacgaagattgatatccttct	CRISPR spacer
tggtgacatcatctacaacaagacgaagattgatatccttct	Protospacer
******************************************

69. spacer 4.14|488692|36|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

attgatgggccatactcaatccatcccccctgaatt	CRISPR spacer
attgatgggccatactcaatccatcccccctgaatt	Protospacer
************************************

70. spacer 4.15|488764|46|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

agtcctaataatcgcagagacaacaaaatcaatgttagtcgcggag	CRISPR spacer
agtcctaataatcgcagagacaacaaaatcaatgttagtcgcggag	Protospacer
**********************************************

71. spacer 4.16|488846|40|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tagaagatttagatccgcttgagaatttggaagccgtttt	CRISPR spacer
tagaagatttagatccgcttgagaatttggaagccgtttt	Protospacer
****************************************

72. spacer 4.17|488922|36|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ggacaggtggctctcgtctttaagctcaatggtcgt	CRISPR spacer
ggacaggtggctctcgtctttaagctcaatggtcgt	Protospacer
************************************

73. spacer 4.18|488764|45|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

agtcctaataatcgcagagacaacaaaatcaatgttagtcgcgga	CRISPR spacer
agtcctaataatcgcagagacaacaaaatcaatgttagtcgcgga	Protospacer
*********************************************

74. spacer 4.19|488846|39|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tagaagatttagatccgcttgagaatttggaagccgttt	CRISPR spacer
tagaagatttagatccgcttgagaatttggaagccgttt	Protospacer
***************************************

75. spacer 4.20|488922|35|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ggacaggtggctctcgtctttaagctcaatggtcg	CRISPR spacer
ggacaggtggctctcgtctttaagctcaatggtcg	Protospacer
***********************************

76. spacer 5.1|841078|42|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aggtgcaaaaatgaatgaagaaaaagacaagtattttattta	CRISPR spacer
aggtgcaaaaatgaatgaagaaaaagacaagtattttattta	Protospacer
******************************************

77. spacer 5.2|841156|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttttatatagttatggaaaagatcaaaaattatataga	CRISPR spacer
ttttatatagttatggaaaagatcaaaaattatataga	Protospacer
**************************************

78. spacer 5.3|841230|35|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aaatactactgattctgaaagaagaaaacaattaa	CRISPR spacer
aaatactactgattctgaaagaagaaaacaattaa	Protospacer
***********************************

79. spacer 5.4|841301|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gccaaaaaatgtagtggccgaatcgcgccagttgacgg	CRISPR spacer
gccaaaaaatgtagtggccgaatcgcgccagttgacgg	Protospacer
**************************************

80. spacer 5.5|841375|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ggatcaaaccagacgcgaagaattcgaccgcaagcaa	CRISPR spacer
ggatcaaaccagacgcgaagaattcgaccgcaagcaa	Protospacer
*************************************

81. spacer 5.6|841448|39|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aaacaaattaattctgaataatcaagcttttccatgttc	CRISPR spacer
aaacaaattaattctgaataatcaagcttttccatgttc	Protospacer
***************************************

82. spacer 5.7|841523|39|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgaaggataatgaattattgctttttccatttgagg	CRISPR spacer
ttttgaaggataatgaattattgctttttccatttgagg	Protospacer
***************************************

83. spacer 5.8|841598|35|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tttctatttattacctattatccttttaataatcc	CRISPR spacer
tttctatttattacctattatccttttaataatcc	Protospacer
***********************************

84. spacer 5.9|841669|38|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

atttatggcttaactccaagctcgggaacagttctcac	CRISPR spacer
atttatggcttaactccaagctcgggaacagttctcac	Protospacer
**************************************

85. spacer 5.10|841743|41|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aaatttactgatatctgataaaaaagtaccaatttccgtga	CRISPR spacer
aaatttactgatatctgataaaaaagtaccaatttccgtga	Protospacer
*****************************************

86. spacer 5.11|841820|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

agaagtcagtcgaacagttcaagaagcctataaaaga	CRISPR spacer
agaagtcagtcgaacagttcaagaagcctataaaaga	Protospacer
*************************************

87. spacer 5.12|841893|37|NC_014533|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tctaaataccaaagctataaaaataacaaagggaaga	CRISPR spacer
tctaaataccaaagctataaaaataacaaagggaaga	Protospacer
*************************************

88. spacer 6.1|846821|36|NC_014533|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cattcaagtagaaaaacaggaactatggaaacattt	CRISPR spacer
cattcaagtagaaaaacaggaactatggaaacattt	Protospacer
************************************

89. spacer 6.2|846892|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ccttattatttgggggacggaagtaactttatgt	CRISPR spacer
ccttattatttgggggacggaagtaactttatgt	Protospacer
**********************************

90. spacer 6.3|846961|38|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cttatgaacagcttgctcaacgtgctggtctgatttaa	CRISPR spacer
cttatgaacagcttgctcaacgtgctggtctgatttaa	Protospacer
**************************************

91. spacer 6.4|847034|37|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tggtgctgaattagccgcatcgttttcgggcgggatt	CRISPR spacer
tggtgctgaattagccgcatcgttttcgggcgggatt	Protospacer
*************************************

92. spacer 6.5|847106|35|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ggatgaaaaaatcgaacgagcatttgaattataca	CRISPR spacer
ggatgaaaaaatcgaacgagcatttgaattataca	Protospacer
***********************************

93. spacer 6.6|847176|39|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ccccttcaatatgcagatgttgaagttcaaggacaggct	CRISPR spacer
ccccttcaatatgcagatgttgaagttcaaggacaggct	Protospacer
***************************************

94. spacer 6.7|847250|39|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

aacatgggaaacctggcaaggttttgtagcaataaggct	CRISPR spacer
aacatgggaaacctggcaaggttttgtagcaataaggct	Protospacer
***************************************

95. spacer 6.8|847324|38|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cagcgacgaaaaatggcaaaaactagacgaataaaatg	CRISPR spacer
cagcgacgaaaaatggcaaaaactagacgaataaaatg	Protospacer
**************************************

96. spacer 6.9|847397|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgcaattcctagggatagcagtagctgtactatt	CRISPR spacer
cgcaattcctagggatagcagtagctgtactatt	Protospacer
**********************************

97. spacer 6.10|847466|37|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ctttagcgcagaactttggtttcaaccaaggaacaaa	CRISPR spacer
ctttagcgcagaactttggtttcaaccaaggaacaaa	Protospacer
*************************************

98. spacer 6.11|847538|32|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

atataaaccaattcacgagggccattagaaga	CRISPR spacer
atataaaccaattcacgagggccattagaaga	Protospacer
********************************

99. spacer 6.12|847605|41|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tttaaaaattatctaatagactatgtagggaaggtaaaatc	CRISPR spacer
tttaaaaattatctaatagactatgtagggaaggtaaaatc	Protospacer
*****************************************

100. spacer 6.13|847681|37|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttcggttaaacactgaacgtgtcaatcgggatctaac	CRISPR spacer
ttcggttaaacactgaacgtgtcaatcgggatctaac	Protospacer
*************************************

101. spacer 6.14|847753|41|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

actccaactatgaggaaataatctcgccctatcttgagaca	CRISPR spacer
actccaactatgaggaaataatctcgccctatcttgagaca	Protospacer
*****************************************

102. spacer 6.15|847829|39|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tctacttattcaacgagatctttgttgacccatatcttc	CRISPR spacer
tctacttattcaacgagatctttgttgacccatatcttc	Protospacer
***************************************

103. spacer 6.16|847903|35|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

atcgttcagaaatcttttacaatatcaacacaaac	CRISPR spacer
atcgttcagaaatcttttacaatatcaacacaaac	Protospacer
***********************************

104. spacer 6.17|847973|37|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

ttttatgtattttttgggggggaggctgatctttgaa	CRISPR spacer
ttttatgtattttttgggggggaggctgatctttgaa	Protospacer
*************************************

105. spacer 6.18|848045|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgttactggttttctcaagaatcagtagatgatg	CRISPR spacer
cgttactggttttctcaagaatcagtagatgatg	Protospacer
**********************************

106. spacer 6.19|848114|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cagtgaagcagataaacagcttgtttatcgtcaa	CRISPR spacer
cagtgaagcagataaacagcttgtttatcgtcaa	Protospacer
**********************************

107. spacer 6.20|848183|39|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

catcaaaaagatagccagttgcttgaatggcacgctaaa	CRISPR spacer
catcaaaaagatagccagttgcttgaatggcacgctaaa	Protospacer
***************************************

108. spacer 6.21|848257|40|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tatcctgatgtattttcttgcggggtgcattttcaatgca	CRISPR spacer
tatcctgatgtattttcttgcggggtgcattttcaatgca	Protospacer
****************************************

109. spacer 6.22|848332|37|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tgttataaatacaaacggacgggttacatttgaaaca	CRISPR spacer
tgttataaatacaaacggacgggttacatttgaaaca	Protospacer
*************************************

110. spacer 6.23|848404|36|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tcgtggtaccagttataaccctgcccgggttcaata	CRISPR spacer
tcgtggtaccagttataaccctgcccgggttcaata	Protospacer
************************************

111. spacer 6.24|848475|35|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cggtgacgacggtatcgatattatcgatgctacgc	CRISPR spacer
cggtgacgacggtatcgatattatcgatgctacgc	Protospacer
***********************************

112. spacer 6.25|848545|36|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

gagtatcgaaacggagggatggcatcagtcacacaa	CRISPR spacer
gagtatcgaaacggagggatggcatcagtcacacaa	Protospacer
************************************

113. spacer 6.26|848616|35|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

cgtttaatgcaaatttcccaagctactgcacccag	CRISPR spacer
cgtttaatgcaaatttcccaagctactgcacccag	Protospacer
***********************************

114. spacer 6.27|848686|35|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

acgtacgataatagaatcctcaaatgaggaggaag	CRISPR spacer
acgtacgataatagaatcctcaaatgaggaggaag	Protospacer
***********************************

115. spacer 6.28|848756|36|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tatgccactttacttcctgtggctgcaagaaaaaca	CRISPR spacer
tatgccactttacttcctgtggctgcaagaaaaaca	Protospacer
************************************

116. spacer 6.29|848827|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

atttttccaaagtttccaaaatgatgcgcagata	CRISPR spacer
atttttccaaagtttccaaaatgatgcgcagata	Protospacer
**********************************

117. spacer 6.30|848896|40|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tataacactcccataagagtgttgagtagtgtcggtagct	CRISPR spacer
tataacactcccataagagtgttgagtagtgtcggtagct	Protospacer
****************************************

118. spacer 6.31|848971|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 0, identity: 1.0

tagtcaagatggcaagttcactgtaaatttcaga	CRISPR spacer
tagtcaagatggcaagttcactgtaaatttcaga	Protospacer
**********************************

119. spacer 3.2|208951|35|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 3, identity: 0.914

ctgacactactgactccaatggagatgggctggcc	CRISPR spacer
ctgacactattgactccaatgcagatgggctggct	Protospacer
*********.*********** ************.

120. spacer 3.2|208951|35|NC_014533|PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 7, identity: 0.8

ctgacactactgactccaatggagatgggctggcc	CRISPR spacer
ctatcagttctgactccaatggagatgggcagcct	Protospacer
**. ** * ********************* * *.

121. spacer 2.7|45161|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to JX195166 (Pectobacterium phage My1, complete genome) position: , mismatch: 9, identity: 0.735

gtatcgtccttt-gttttaacatttaacttatagc	CRISPR spacer
-tacagttccttggtcttaacatttaacttatcag	Protospacer
 **. **.*.** **.**************** .

122. spacer 6.2|846892|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to MN694142 (Marine virus AFVG_250M416, complete genome) position: , mismatch: 9, identity: 0.735

ccttattatttgggggacggaagtaactttatgt	CRISPR spacer
ggaagaaatttgggggtcggaagtaactttattt	Protospacer
    .  ********* *************** *

123. spacer 2.13|45597|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024217 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-9) position: , mismatch: 10, identity: 0.706

ccggacattgactataaggtaacacaattattat	CRISPR spacer
ttgataaaatactttaaggtaaaacaattattat	Protospacer
..*.  *   *** ******** ***********

124. spacer 2.13|45597|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024209 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2) position: , mismatch: 10, identity: 0.706

ccggacattgactataaggtaacacaattattat	CRISPR spacer
ttgataaaatactttaaggtaaaacaattattat	Protospacer
..*.  *   *** ******** ***********

125. spacer 2.13|45597|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040828 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-2, complete sequence) position: , mismatch: 10, identity: 0.706

ccggacattgactataaggtaacacaattattat	CRISPR spacer
ttgataaaatactttaaggtaaaacaattattat	Protospacer
..*.  *   *** ******** ***********

126. spacer 3.2|208951|35|NC_014533|PILER-CR matches to MN694517 (Marine virus AFVG_250M306, complete genome) position: , mismatch: 10, identity: 0.714

ctgacactactgactccaatggagatgggctggcc	CRISPR spacer
tcatttcaaatgactccaatgtagatgggttggcc	Protospacer
... . * * *********** *******.*****

127. spacer 6.2|846892|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to MN693786 (Marine virus AFVG_250M1027, complete genome) position: , mismatch: 10, identity: 0.706

ccttattatttgggggacggaagtaactttatgt	CRISPR spacer
ggaagaaatttggggctcggaagtaactttattt	Protospacer
    .  ********  *************** *

128. spacer 6.2|846892|34|NC_014533|CRISPRCasFinder,CRT,PILER-CR matches to MN693811 (Marine virus AFVG_250M463, complete genome) position: , mismatch: 10, identity: 0.706

ccttattatttgggggacggaagtaactttatgt	CRISPR spacer
ggaagaaatttgggggtcggaagtaacattattt	Protospacer
    .  ********* ********** **** *

129. spacer 2.7|45161|34|NC_014533|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031276 (Staphylococcus xylosus strain 2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

gtatcgtcctttgttttaacatttaacttatagc	CRISPR spacer
tctgtatactttgtttcaaaatttaacttatatg	Protospacer
 .  ..* ********.** ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

171662 : 179935

Paramecium_bursaria_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173362933.1\|171662_172934_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.2e-13	34.9
WP_013334332.1\|172958_173468_+	N-acetyltransferase	NA	NA	NA	NA
WP_013334333.1\|173503_174541_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013334334.1\|174537_175641_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	4.7e-49	33.0
WP_013334335.1\|175784_176492_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	3.1e-06	53.7
WP_013334336.1\|176481_177441_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9L4U8	Tupanvirus	2.4e-33	30.9
WP_013334337.1\|177437_178721_+	nucleotide sugar dehydrogenase	M1HKZ1	Paramecium_bursaria_Chlorella_virus	4.9e-18	26.9
WP_013334338.1\|178717_179935_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	1.0e-41	32.9

DBSCAN-SWA_2

782263 : 821952

Microcystis_virus(40.0%)

transposase,capsid,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013334696.1\|782263_782620_+\|bacteriocin	colicin V family bacteriocin	NA	NA	NA	NA
WP_013334697.1\|782748_785148_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA
WP_013334698.1\|785138_785930_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_013334699.1\|788539_789352_+	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.1e-14	26.6
WP_157871989.1\|789341_789905_+	VOC family protein	NA	NA	NA	NA
WP_013334701.1\|790230_791142_+\|capsid	minor capsid protein	A0A2D2W211	Stenotrophomonas_phage	4.8e-07	29.4
WP_013334702.1\|791156_791585_-	hypothetical protein	NA	NA	NA	NA
WP_013334703.1\|791638_791866_-	hypothetical protein	NA	NA	NA	NA
WP_041934108.1\|791868_792174_-	hypothetical protein	NA	NA	NA	NA
WP_013334705.1\|792166_793033_-	prophage antirepressor	A0A7D8	Microcystis_virus	1.4e-29	54.8
WP_013334706.1\|793208_793412_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013334707.1\|793519_793924_+	hypothetical protein	NA	NA	NA	NA
WP_013334708.1\|793901_794312_+	hypothetical protein	NA	NA	NA	NA
WP_013334709.1\|794289_794649_+	HNH endonuclease	NA	NA	NA	NA
WP_013334710.1\|794807_795149_-	hypothetical protein	NA	NA	NA	NA
WP_013334711.1\|795178_796291_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041934109.1\|796387_796678_+	hypothetical protein	NA	NA	NA	NA
WP_013334712.1\|796925_797093_+	hypothetical protein	NA	NA	NA	NA
WP_013334713.1\|797152_797662_+	hypothetical protein	NA	NA	NA	NA
WP_013334714.1\|797731_798139_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_041934086.1\|801279_801516_+	hypothetical protein	NA	NA	NA	NA
WP_041934087.1\|801567_802080_+	hypothetical protein	NA	NA	NA	NA
WP_013334715.1\|802313_802940_+	hypothetical protein	NA	NA	NA	NA
WP_157871990.1\|803065_803332_+	hypothetical protein	NA	NA	NA	NA
WP_013334717.1\|803358_804501_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A7P9	Microcystis_virus	1.7e-115	58.7
WP_013334718.1\|804543_804771_-	hypothetical protein	NA	NA	NA	NA
WP_013334719.1\|804773_805115_-	hypothetical protein	NA	NA	NA	NA
WP_013334720.1\|805239_805443_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013334721.1\|805495_805780_+	hypothetical protein	NA	NA	NA	NA
WP_013334722.1\|805813_806206_-	hypothetical protein	NA	NA	NA	NA
WP_041934112.1\|806846_807212_-\|transposase	transposase	NA	NA	NA	NA
WP_083786950.1\|807805_808039_+	AAA-like domain-containing protein	NA	NA	NA	NA
WP_049802757.1\|807965_813743_-	AAA family ATPase	Q67624	IC4_retrovirus	2.2e-12	25.9
WP_013334724.1\|813904_816166_-	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_013334725.1\|816200_816902_-	hypothetical protein	NA	NA	NA	NA
WP_013334726.1\|817041_818457_-	SagB family peptide dehydrogenase	NA	NA	NA	NA
WP_013334727.1\|818484_819912_-	hypothetical protein	NA	NA	NA	NA
WP_013334728.1\|820051_821146_-	amidohydrolase	NA	NA	NA	NA
WP_041934113.1\|821481_821952_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage