CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015958	Thermoanaerobacter wiegelii Rt8.B1, complete sequence	4 crisprs	csa3,RT,DEDDh,cas3,cas4,cas2,cas1,cas5,cas7b,cas6,cas14k	0	6	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015958_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015958_1

606921-607029

Orphan

Consensus_repeat	Method
TAAAAGAAGCGGGTTTCCCACTTCTTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015958_1

>merge|NC_015958|1|606921-607029|CRISPRCasFinder
TAAAAGAAGCGGGTTTCCCACTTCTTTTAGCTTGTTGACAAAGTCAAAATATCTCCTTTGCAAAAGTTTTTCATCAGTCTAAAAGAAGCGGGTTTCCCGCTTCTTTTAG

>NC_015958|1|1|606921-607029|CRISPRCasFinder
TAAAAGAAGCGGGTTTCCCACTTCTTTTAG	CTTGTTGACAAAGTCAAAATATCTCCTTTGCAAAAGTTTTTCATCAGTC
TAAAAGAAGCGGGTTTCCCGCTTCTTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015958.1\|WP_014062389.1\|615857_616370_+\|transcription-repressor-NadR	unknown	unknown	gnl\|CDD\|224740
NC_015958.1\|WP_014062375.1\|596439_597228_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NC_015958.1\|WP_014062376.1\|597245_601805_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NC_015958.1\|WP_014062384.1\|611401_612124_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_015958.1\|WP_014062386.1\|613180_613822_+\|hypothetical-protein	unknown	unknown	unknown
NC_015958.1\|WP_014062379.1\|604518_606048_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236082
NC_015958.1\|WP_014062370.1\|589302_590787_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_015958.1\|WP_014062372.1\|592288_593089_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225806
NC_015958.1\|WP_003869296.1\|609364_609562_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379193
NC_015958.1\|WP_014062378.1\|604161_604503_+\|flagellar-protein-FlaG	unknown	unknown	gnl\|CDD\|377090
NC_015958.1\|WP_003869286.1\|603833_604019_+\|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase	unknown	unknown	unknown
NC_015958.1\|WP_014062385.1\|612505_613051_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|379821
NC_015958.1\|WP_014062377.1\|601852_603694_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NC_015958.1\|WP_014062387.1\|614043_615318_+\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NC_015958.1\|WP_014062369.1\|587448_588249_+\|flagellin-Hag	unknown	unknown	gnl\|CDD\|183759
NC_015958.1\|WP_003869298.1\|610752_611415_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_015958.1\|WP_014062383.1\|609901_610687_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NC_015958.1\|WP_014062388.1\|615307_615883_+\|DUF5317-domain-containing-protein	unknown	unknown	gnl\|CDD\|379952
NC_015958.1\|WP_014062390.1\|616482_616983_+\|hypothetical-protein	unknown	unknown	unknown
NC_015958.1\|WP_014062067.1\|589084_589243_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015958.1\|WP_014062389.1\|615857_616370_+\|transcription-repressor-NadR	gnl\|CDD\|224740	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only].	7.52301e-54
NC_015958.1\|WP_014062375.1\|596439_597228_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	5.80268e-26
NC_015958.1\|WP_014062376.1\|597245_601805_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.9833e-69
NC_015958.1\|WP_014062384.1\|611401_612124_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.17675e-163
NC_015958.1\|WP_014062379.1\|604518_606048_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236082	PRK07737, fliD, flagellar hook-associated protein 2.	1.3079e-118
NC_015958.1\|WP_014062370.1\|589302_590787_-\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.64664e-40
NC_015958.1\|WP_014062372.1\|592288_593089_-\|AAA-family-ATPase	gnl\|CDD\|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	3.59287e-39
NC_015958.1\|WP_003869296.1\|609364_609562_+\|hypothetical-protein	gnl\|CDD\|379193	pfam13451, zf-trcl, Probable zinc-ribbon domain. This is a probable zinc-binding domain with two CxxC sequence motifs, found in various families of bacteria.	1.63993e-22
NC_015958.1\|WP_014062383.1\|609901_610687_+\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.41252e-93
NC_015958.1\|WP_014062385.1\|612505_613051_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|379821	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus. This domain often occurs at the C-terminus of proteins containing pfam02482.	2.79175e-33
NC_015958.1\|WP_014062377.1\|601852_603694_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	8.24777e-165
NC_015958.1\|WP_014062387.1\|614043_615318_+\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	2.89409e-68
NC_015958.1\|WP_014062369.1\|587448_588249_+\|flagellin-Hag	gnl\|CDD\|183759	PRK12804, PRK12804, flagellin; Provisional.	1.86534e-103
NC_015958.1\|WP_003869298.1\|610752_611415_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.18215e-83
NC_015958.1\|WP_014062378.1\|604161_604503_+\|flagellar-protein-FlaG	gnl\|CDD\|377090	pfam03646, FlaG, FlaG protein. Although important for flagella the exact function of this protein is unknown.	1.08707e-22
NC_015958.1\|WP_014062388.1\|615307_615883_+\|DUF5317-domain-containing-protein	gnl\|CDD\|379952	pfam17248, DUF5317, Family of unknown function (DUF5317). This is a family of unknown function found mainly in Bacteria. Members of this family have multiple trans-membrane domains with the majority typically constituted of 4 trans-membrane regions.	3.22325e-49

>NC_015958.1|WP_014062379.1|604518_606048_+|flagellar-filament-capping-protein-FliD
MDPISMNSYNVSNLLRISGLATGLDTDSMVQQLMKAASIPLDKLEQQKQWYQWQQEDLRDINTQLMSLRNDIVFKLKLQGTFMAKTVASSNPSVATATAGVNAVNGTYTISVTQLAQAATTASTDKIGAATKNSDGTYTYNTLNNTGNDIYLYLKGLDGTNKQIVIKNGATINDVVAAINAQTNATGVIATYDPGLDRLFLVSNFTGANSKIDFSGTTDSTAQNFLTSILKLDPNILNAGGITGQDAEFTFNNVPMTSSTNNVTVAGINITLTGTSNSTTTITVSTDVDKIYNTIKSFVDTYNDIITKINTKLTEKRYYDYPPLTSEQKQAMKDSDITLWEQKARSGDLANDETLMRVYYSMRNDISSTISGAGSLSSIGITTGQWYEGGKLYIDETKLRDAIATNPQLVMNIFTGTSTSQGIAQQLYDTLNSGIDAITQKAGSTTQLYDTSFIGNRIREIDDRIAQMQDYLNNLEQRYYAQFTQLEMYVSQMNSQSAWLSQQIGVMGK
>NC_015958.1|WP_014062378.1|604161_604503_+|flagellar-protein-FlaG
MLQGISTAGTGQVNSQFKRDSALVEEIKAVKDILSKPVDEDKLNSELNKENRKISINDHTYFEFSVHKPTNTIVVKIVDSDTNEVIDEIPPEKILDLVAGLWKIAGLFVDRKI
>NC_015958.1|WP_003869286.1|603833_604019_+|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase
MEKVIKEHYYEENDIAERIKLLKKKLNECNIELPKALELSRELDELIVMYMKREKQVKQVK
>NC_015958.1|WP_014062377.1|601852_603694_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGWVNFDMDLSLQNEVIEKMTDTLKKRGPDGSGIWLSKHCALGHRRLIVIDPEGGSQPMIKKYGEKNFVIIHNGELYNMDELKNELISLGYTFKTRSDTEIILTSYIEWGPLCVKKFNGIFAFAIWDEVQNRLFIARDHLGIKPLFYTIKNGSLIFGSEIKAILAHPHVKPEIDSQGLAEIFVMGPSRTPGCGVFKDIKELKAGHYLIFTKNGANISKYWSLQSLPHEDDLEKTGEKIRYLLKDSSVRQLVSDVPLCSLLSGGLDSTAVSFFANEELKQKGQKLITYSVDYVGNDKYFTPNEFQPNSDADWVKFVAKKLDTNHNYVFIDNEELAHALKPALYARDLPGMADIDSSLYLFLKEVKKGATVALSGEGADEVFGGYPWFRNKEAVESHTFPWIRMVKERMKLLLPEVVKYIRPIEYLNDRYNEALNEVPKLIGEDPKNTRMREMFYINITRFMPMLLDRMDRMSMAVGFEARVPFLDYRLVEYVWNIPWEMKNLNGREKGILRYALKGYIPDEVIDRKKSPYPKTHNPVFKIIVKKWLKQIIDDSTSPLLQLVDKKIVAELIETDAKAYDPAWFSQLMGSAQLFAYLVQINMWLTDYKISLV
>NC_015958.1|WP_014062376.1|597245_601805_+|glycosyltransferase
MNILLTTFWEYPHVGGVSSYITTLKNGFESTGNNVYVLSYNNVKEQIGKQYTLISLIENFKVVFSSLVKEISIKNNIDIIVCNDVIALLASKQAQVNIPCLLTVHGYLADEYIASNSILKGSIEEKYLRSLEEIAYKISDNIITVGERLKKYINKITQRDVFVINNFVDINKFKFIKINKPDNKFTILFSGRLTKQKGVIFLIKAMELLLNEFNNIELIIIGNGEDYHTLKNYIKDKNLDNYIKFEGIVDNKFMPEMYNKSDVVVVPSIKLDNVEEPFGIVAIEAMACRKAVIASGIGGLREIIVDGYNGFLVPDKNPEAIAEKIKYIILNPELSKEIGQNARKTVEEKFSTEIAIKKYYNIYKKTIEKYYELRQWPFIIKNSATNIDNKMSILNEEEKKLIEINTLIIDGRYKDAINLINYISNNLINNKYSDVINYMKAISFTKINDLDNAFNYISMINSINNDKYRLLYGDILLLKNNYSEAIEQYRKLEDDKLKKIRLSLCEFVSEGYLKLKNHDDLISKCINIFKENNYKLNITYLPIVNGVTGGMRIIYEQINRLIERGHNVEAISYYGNPDWFDLKLNVKKISLGEKVEKYISNTDAIVYTFWNQWYEINNLDNTLFLIQGDEFLFDDNKLDTSLRETVTNSYIYSESKFLAVSRFLKETIQEKYNRNCTVIKNAIDTEKFYCNSEIKQGDKIRIIIVGNAMLKFKGFDDILKAFNIVKDKGYDFEVIWITQSQPEINLEKYIRVYVNPPQEKIPELYRVADIYVAGSYYEACPLPPLEAMASGCAVVTTNSGGVTEYAKDGYNCLMSKPGDFYGLAEKIIQLIKDKDLRKKLVKNGLETIKEFTWNKAIDVLEDTLIENYLDVKPIKSSQFTLNTLSLCLITKDEEKNIARCINSVKDIVDEIVVVDTGSTDKTVEIAKSFGAKVIHAKWEDDFSKARNIAIENATGDWILFLDADEEIRKDDVSRIRLLLNDDTVEAYIFKFINYGGTNIANGLTEVHYNFRLFRNNGKLKYIYPIHENLRNVEENRLPIFKKADVTILHYGYLLETRIEKNKTEKYIKLISKYLEEHPDDKFQHGNLAVEYYNAKEYHKALKHLLIATKGMNVNSPTATRLIRYLIATYTALKDYDTALKIANDAKAFYIDIPDFKFFEGMIYAEQKRYEKAIEMFKECVAMGEYNGDFITMGGTGSYRAKYMAALCYEKLNKLNDAVREYIEILKENPSYQEVFIKFFDVLIKNEPPEDVYRFFEKHVDTKNPVNNAILAKLYINLGMFEMAKRYIDNINIDIEGLNSLKGTVYLGLKDYKKAIEYFDMEYGKAKEEATYQKVLCYILLKEIDKAKNLLWEISESSDKKLYMTIVGEMKAKFDDIKDSYFALLDLLISLKEFDLYNDVLNLYVNKFSKEEYEKYGQLMIKYGLEELAVEAYIRAANLNSQNPEVYRYLAERALGQDMYDEALSLAANAFNIDKMDVDNYVLLYKIYKTIGKHDEAEEINRMIKEIYPEIDLEERVSLY
>NC_015958.1|WP_014062375.1|596439_597228_+|FkbM-family-methyltransferase
MFGTYIGNNRVLVSTKWGGMLLVNSSDLSLTPTLIINGIYDVGLTNYLIKNIKNGDTVVDIGANIGYFTVLMGYLVGNDGKVISYEANPNLIPLIQDNISMNYIGNRVKIYNKAIYSDFKKLSFYITDKFMGNSSLHKHDDGYLNKYKGDSIKEIQVDAEPLDAIYDNIDKITFLKIDIEGGEYHALKGMEKLLASGKIETLSFELNRGMLQDDWNLLYEFLKIHNEMHYYILNNNGDIISISLDDIFRHDEIPNVIIKIKI
>NC_015958.1|WP_014062372.1|592288_593089_-|AAA-family-ATPase
MFTQYFGMKFNPFSKEISVNDLYISEDIAELNARLKYLQETRGIGLIVGEAGSGKSTALRRYAESLNRSTFKPCYFALSTLTVREFYQALAMILGETPSYKKVTLFYQIQRAITELYYSQKITPVIILDEIQLVSNDVLEDLRIIFNFNMDSKNPYILILSGQPHIRNKLALNVNSALRQRISIKYVMQGLKKEEIQDYIKTRMKIAGMMDDIFTPSAYEAIYSPTKGLPRIINNLVTASLLYAYSKRLREIDEEVIYQAQNEISL
>NC_015958.1|WP_014062370.1|589302_590787_-|IS1182-family-transposase
MLTKKQDARHQIEFVSIDQLVPKDHLLRKIERVIDFNFIYDLVKDKYSEDHGRPSIDPVVLIKILFIQYLFGIPSIRRTIAEIKTNVAYRWFLGYGLTEEIPHFSTFSQNYIRRFKGTDIFEKIFTKILEEAIRHGLVNAEEVFIDSTHVKASANKKKYTKEIVEQEARTYQEKLEEEINKDREAHGKKPLKKIKTIKTKEVKVSKTDPDSGMLNKNGKEKCFAYSFHTACDKNGFVLGVKVEAANVHDSVMFEEVLEEVEKRIGKPKAIAVDAGYKNPYILKTIFNREIIPAVPYTRPKTKDGFMKKHEFVYDEYYDCYICPQNEILTYVTTNREGYREYKSNPEKCKNCPLREKCTQSKDYTKRIFRHIWEGYVEEAEHLRHTPYCKEVYERRKETIERVFADLKEKHGLRWTTLRGKEKLSMQAMLVFAAMNLKKMATWLWRRGKSPFGTLNFYPLFGTLKKILSRYIQPLFSGLRKQGLKFRFVNRVGAE
>NC_015958.1|WP_014062067.1|589084_589243_+|hypothetical-protein
MNSRDMRRLQTTQQRGYPLDREREFQKTTEVHSISSASRDGRNDVLRIVHNS
>NC_015958.1|WP_014062369.1|587448_588249_+|flagellin-Hag
MIINHNLSALNAWRALSINTTNTQKVLEKLSSGYRINRAGDDAAGLAISEKMRAQIAGLNQAQRNAQDGISLIQTAEGALTETHAILQRMRELVVQAGNLGTNQSEDLQAIQDEINRLNEEITGISQRTQFNGKTLLNGDYSTTALVFQIGANQGQQMSLTIGAMDASTLGVEGISVATFSTSADIDTALSAIDNAINTVSSQRSALGATQNRLEHTINNLGVASENLTAAESRIRDVDMAKAMMEFTKDNILNQAATAMLEGMAA
>NC_015958.1|WP_003869296.1|609364_609562_+|hypothetical-protein
MYQDKVLVCKDCGKEFVWTAGEQQFYAEKGFQNEPVRCKACREAKKRRNHQYNARRDKKAFGMSR
>NC_015958.1|WP_014062383.1|609901_610687_+|basic-amino-acid-ABC-transporter-substrate-binding-protein
MNKKTLFVFLTMTIILGLILSACGTKPANTLDKIKEKGVIVMGTSADFPPYEFHKVEGNKDTIVGFDVDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRIDMIVAGMTPTPERAKSVDFSDLYYNSQQVVVVKNDSPISKFDDLKGKTVAVQIGTTSEEAAKKIPDVNLKQLNRVGDAFMDLKNGRCDAIVLENTVANAYLKEYKDMKMVFMKEINTVDNGSAVAVAKGNKELVNIINEVIKELKASGEYDKLIDKWFKQ
>NC_015958.1|WP_003869298.1|610752_611415_+|amino-acid-ABC-transporter-permease
MSVNFLSMLKYSHLFVSGLLMTLKLTFLAVTIGVILGLIVALIKMSSIKPISFIGASYVEIIRGTPLLVQLLLIYNGLMQFGIDIPAFTAGVSALAINSAAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIGFADLTRQADIIQSITYKYFEPYIIIAAIYFVMTFIFSRLLGIFERRLRAGDTR
>NC_015958.1|WP_014062384.1|611401_612124_+|amino-acid-ABC-transporter-ATP-binding-protein
MIRVNEVYKTFGNLEVLKGVSLNVNKGEVVVIIGPSGSGKSTLLRCINLLEVPTKGEIYIEGIKINDKKVNINKIRQKVGMVFQHFNLFPHLTALENVTLAPIKVKKMDKKAAENIALGLLEKVGLVEKKDEYPIKLSGGQKQRLAIARALAMQPDIMLFDEPTSALDPEMVKEVLNVMKGLANEGMTMVVVTHEMGFAREVGDRVIFMDDGMIIEEGTPEDIFYNTKNERTKEFISKIL
>NC_015958.1|WP_014062385.1|612505_613051_+|ribosome-associated-translation-inhibitor-RaiA
MNITVSGKNGMTVTDGLRDAVIKNVSKLSKYFTEDTEVRTVLSVQKNNHIAEITIPFKGIIFRAEEVSDDMYVSIDRVVDKIEKQILKHKAKLKNRFGANESIRFEIPPVYQEARGEEEEASFEIVKTKRFPIKPMSPEEAILQMNLLGHNFFVFTNAETDTINVVYKRKDGKYGLIEPIE
>NC_015958.1|WP_014062386.1|613180_613822_+|hypothetical-protein
MGEITKDTVNSMEGYINKIQGVLSNRVVVENGEITEIHVLADSTRNAKQIARDVQSVIMAQFGIDINHKIVSVAQIDTGEKLQGEHRLVFSSYSFINNGLTSEARVILTRGDEIFEGYAEGPNTASNKYRIIANATLDSISKLIPKNHLFLLEDVDIFNIAKSRIIVVGVTHVTNNQEDLLTGSCLIKKDEGEAVVKATLDAVNRRVMSITSL
>NC_015958.1|WP_014062387.1|614043_615318_+|HD-GYP-domain-containing-protein
MLNKRVKIYISIIITVGLFFIIYSMLHISTNQIIDIIWFGFFAALAESMPLYVTKELTVSVAFTIDLMAVLIFGPYEGSLIAAIGVGFQVGKYMDGKIRHIFNFPYYKTLFNISQLALSVGIGGLIYRYSGGVSTTYIYPKYILPALLAAITYYLLNTIMVAVLVSLLTNRRIKYVLTKDFKWMVPNFFFLAFLGIVMSEAFIRIGYVSLILLFIPLLMIRYMFKLYMDSKQSYYDTINVLVKALDAKDKYTAGHSKNVEKIAALLCREFGFSESHTEMVRIAALLHDIGKIGVKEEVLNKPGKLTDEELSIIKEHPQKGYEILKEVPTLKEASLWVKYHHEWYNGSGYPDGIKGDEIPLEAQILSLADVFDALVSDRPYRKAFSQEGAYEIIVGNEGTQFSPKIINAFKKAFEKHREEFKHDI
>NC_015958.1|WP_014062388.1|615307_615883_+|DUF5317-domain-containing-protein
MIFDSLGASLIYGTLRRGKISGIADIDIKKPSLFIAAFALEFSMLNLANKFHVIMEYRSYIHFFVYLLLFLGLWYNRNNKYFRIISVGVLLNFIVIFANGGRMPVSIDALKAAGLNNLIPELQANKIATHQVLTNSTRLKFLADVLVLPKPYPLPKAFSIGDFIMATGTFLLVTNAMLKKVKSHDGTRKKE
>NC_015958.1|WP_014062389.1|615857_616370_+|transcription-repressor-NadR
MTAQERRNKIVEILKNAKEPISGSDLAKRFGVTRQVIVQDIAILRAKGIKILSTPQGYIIDIVKENTVKRVFAVKHGYDRTEEELNLIVDNGGKVLDVIVEHPFYGEIKGLLMLSSRYDVSKFMEFVKEGKATLLSSLTDGVHLHTVEAESEEVLDRIQKALEEKGFLIE
>NC_015958.1|WP_014062390.1|616482_616983_+|hypothetical-protein
MKTREITLGGLLAALALVIPLAFGGVLGIVIPPFSATLASHVPVMLAMLISPVTAVFVGVVSAIGFLIKLGPVIAARAAVHAVFGYVGAKMIQKGYSFPVALAVTLPIHAVLEAIVVIPFGFDFYKALVVVGVGTMIHHTIDSVIALALFYVLNPILKFKAVDIKN

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Crispr_ID: NC_015958_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015958_2

1497859-1497954

Orphan

Consensus_repeat	Method
ACTATTTTCAGGATAGGTAGGCTAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015958_2

>merge|NC_015958|2|1497859-1497954|CRISPRCasFinder
ACTATTTTCAGGATAGGTAGGCTAAAAACTCATTTCGCCTTTGCCATACATCACAAAGCATCTCCGTACTATTTTCAGGATAGGTAGGCTAAAAAC

>NC_015958|2|2|1497859-1497954|CRISPRCasFinder
ACTATTTTCAGGATAGGTAGGCTAAAAAC	TCATTTCGCCTTTGCCATACATCACAAAGCATCTCCGT
ACTATTTTCAGGATAGGTAGGCTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015958.1\|WP_014062981.1\|1491547_1494028_-\|DUF2357-domain-containing-protein	unknown	unknown	gnl\|CDD\|286861
NC_015958.1\|WP_014062980.1\|1490669_1491248_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_015958.1\|WP_003869602.1\|1505962_1506331_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NC_015958.1\|WP_004401205.1\|1487003_1487540_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl\|CDD\|235365
NC_015958.1\|WP_014062979.1\|1490040_1490475_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237817
NC_015958.1\|WP_014062987.1\|1508104_1508569_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_015958.1\|WP_014062976.1\|1485883_1486798_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_015958.1\|WP_083820897.1\|1498007_1498400_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NC_015958.1\|WP_014062974.1\|1483603_1484527_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|273987
NC_015958.1\|WP_014062978.1\|1489118_1490036_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_015958.1\|WP_014062985.1\|1506468_1507224_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_015958.1\|WP_014062986.1\|1507223_1507844_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NC_015958.1\|WP_014062983.1\|1500037_1501213_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015958.1\|WP_014062989.1\|1509572_1510844_-\|copper-amine-oxidase	unknown	unknown	gnl\|CDD\|377924
NC_015958.1\|WP_014062982.1\|1494002_1495754_-\|DUF3578-domain-containing-protein	unknown	unknown	gnl\|CDD\|371900
NC_015958.1\|WP_014062977.1\|1487760_1488756_+\|AIR-synthase	unknown	unknown	gnl\|CDD\|100037
NC_015958.1\|WP_014062988.1\|1508569_1509529_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379376
NC_015958.1\|WP_014062984.1\|1501715_1502936_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_015958.1\|WP_014062975.1\|1484586_1485882_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_015958.1\|WP_004401462.1\|1511223_1511409_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200

Protein	Function_ID	Function_description	E-value
NC_015958.1\|WP_014062981.1\|1491547_1494028_-\|DUF2357-domain-containing-protein	gnl\|CDD\|286861	pfam09823, DUF2357, Domain of unknown function (DUF2357). This entry was previously the N terminal portion of DUF524 (pfam04411) before it was split into two. This domain has no known function. It is predicted to adopt an all beta secondary structure pattern followed by mainly alpha-helical structures.	5.23729e-53
NC_015958.1\|WP_014062980.1\|1490669_1491248_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.68146e-41
NC_015958.1\|WP_003869602.1\|1505962_1506331_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	7.30497e-47
NC_015958.1\|WP_004401205.1\|1487003_1487540_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	4.06874e-98
NC_015958.1\|WP_014062979.1\|1490040_1490475_-\|signal-peptidase-II	gnl\|CDD\|237817	PRK14791, PRK14791, lipoprotein signal peptidase; Provisional.	5.60871e-56
NC_015958.1\|WP_014062987.1\|1508104_1508569_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.02105e-24
NC_015958.1\|WP_014062976.1\|1485883_1486798_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.04865e-178
NC_015958.1\|WP_083820897.1\|1498007_1498400_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	6.17657e-43
NC_015958.1\|WP_014062974.1\|1483603_1484527_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|273987	TIGR02127, Orotidine_5'-phosphate_decarboxylase, orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	1.54172e-113
NC_015958.1\|WP_014062978.1\|1489118_1490036_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.29113e-125
NC_015958.1\|WP_014062985.1\|1506468_1507224_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.31711e-24
NC_015958.1\|WP_014062986.1\|1507223_1507844_-\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	4.76837e-48
NC_015958.1\|WP_014062983.1\|1500037_1501213_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.98587e-27
NC_015958.1\|WP_014062989.1\|1509572_1510844_-\|copper-amine-oxidase	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	1.66726e-31
NC_015958.1\|WP_014062982.1\|1494002_1495754_-\|DUF3578-domain-containing-protein	gnl\|CDD\|371900	pfam12102, DUF3578, Domain of unknown function (DUF3578). This presumed domain is functionally uncharacterized. This domain is found in bacteria and archaea. This domain is typically between 177 to 191 amino acids in length.	1.40135e-61
NC_015958.1\|WP_014062977.1\|1487760_1488756_+\|AIR-synthase	gnl\|CDD\|100037	cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.	1.49073e-134
NC_015958.1\|WP_014062988.1\|1508569_1509529_+\|hypothetical-protein	gnl\|CDD\|379376	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal. This domain is found near the N-terminus of a sigma factor regulator. The N-terminus is responsible for interaction with the sigma factor.	9.83534e-25
NC_015958.1\|WP_014062984.1\|1501715_1502936_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	6.59674e-41
NC_015958.1\|WP_014062975.1\|1484586_1485882_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NC_015958.1\|WP_004401462.1\|1511223_1511409_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	1.53786e-27

>NC_015958.1|WP_014062982.1|1494002_1495754_-|DUF3578-domain-containing-protein
MSLKTLFKEVMDNYIKARTSQPFKGNRIGDILRKEIPQEIQKFDFIGDEYFIKGSNGQGNWAEIPWVAIMDKNITQTTMEGVYIVYLFSSDMKRLYLTLNQGYTKLKDKYGKFGAIEKMLSLASKIRSKIEAKGWNTDNNLPIGNEFYEKGTIFYKKYENDDLPDDETLKNDLHDLINIYKNVSVLSGEDKDQIYENEEDYIPDNDTSYNVKDELDYIKSYIKNQGFSYNDKLIENFYLSLKSKPFLILAGISGTGKSKLARLFAEAIGCNTKNGRFMLVPVRPDWSDSTELLGYKDMHNKFHPGVLTNFIKRAINDINKPYFFVLDEMNLARVEYYFSDILSIIESRKKDGDRIVTDPLLNKELLDEDSFHEYGNLYIPENLYFIGTVNMDETTFPFSKKVLDRANVIEFSDVNLDYFVGDIEEITEKVLNNSFLKSEFLTLNDCLDYREIIDDVILVLKKINDVLREGNLHFGYRVRDEISFYMIYNELNGLMDFDEALDLEILQKILPRIHGSSISIKKILIELFKICSGNYEAKYEYEDMDVSDKMLKDMDNCVYPRSAEKIIYMVRRYEEDGFTSYWL
>NC_015958.1|WP_014062981.1|1491547_1494028_-|DUF2357-domain-containing-protein
MDLRHTGSDVDLLYISTPKFDFSIKSNPYHPNVGALDINKNIKAKIYISCTEYTAEIYSPIENKMVPYTGDSYPLFYEQQNYEIVIEKKTDDDVLFWHENINIRNKVRFVGASKRVLSGIINFKNDIGYSELIMLVNNREYLKVTIEVFPSKIDYQKDYYALLQDINNELYNLTFDFYKRTYFYSMTKNKVGNSLTEFFAIINQVFDKLNKSIMIVLNMPHHVLKKDREILKYYTAKRVDREGIKWINKHPQYVKNINGEIIVDKVFSVKSSITYDTYENRLVKYIIKSIIKKLNLVKKNYEKESSIVDENIKKSIEAMIYKLGRHLNYSFLKDVGDIYTMNSLSLVLNMAPGYKDVYKYYIMLLKGLMIREYIFKISMKDLAILYEYWCFIKLNSILREKYSLVKQGIIKFNNRGLTVTLTKGEETRVEYQNPKNGEIYSLVYNKKFRYDNIPTTPQMPDSILSLSKVGSNTIFKYVLDAKYKINPAVVDTDYYNKYRSPGPEEEDINTMHRYRDAIVYENKNNKNFEKMVFGAFILFPYSDEEKYKEHHFYKSIEKVNVGGLPFLPGSTKLVEKLIDDLINNSFESAFEDSVFQGGTYEYLDQVKFDDKEVLVAPLSSKEQLEINLKYNFYHIPYKNIKSSGIKFKYVAIYQSIKKFDKEAGIHYYGRIKGFEIVKRKDIKEIPKDSDELYVKFEIEKWKKLEIPITCGPFGVTNRIYTNLFLLKNAKNVSELCIKTKEDYRLYLELKRLYEHQEEFLKVNINSKMIDENTKITGFKIGNLTIFINEGYYYIYKDDILRDKIPIEEFSKRPNAIIKRIRREIQQ
>NC_015958.1|WP_014062980.1|1490669_1491248_+|Uma2-family-endonuclease
MEFPIKHNIYTYSDYLKLEDGERVELIEGNFVAMSPSPSRIHQKIITEVSRVIGNFIKEKNLECEVYVAPFDVRLIDKDETEENCKNVVQPDISVICDKSKLDDKGLKGAPDFIIEVVSPSNVSIDYVKKLYLYEKFKVKEYWIVNPVSKNIFVYKLDEKGQYSEPEKYTIEDTIKVNIFKKLEINIAKLIK
>NC_015958.1|WP_014062979.1|1490040_1490475_-|signal-peptidase-II
MEIIIVAFVVLLDQVTKYLAVKYLMPIWSYPVIKNFLHLTYVENKGAAFGMLQNKTLFFIVITVIVGAVLIYSMIKLPENSVYNYTLAMILGGAIGNLIDRVRLGYVVDFIDFKFFPAVFNVADSFIVIGAIILGYLMIFMEKA
>NC_015958.1|WP_014062978.1|1489118_1490036_-|RluA-family-pseudouridine-synthase
MNVVDKIVLQGEKEDEGKRIDVFLAAELDYTRSYIKKLIVDELVFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHCKNLSGINGILRPGIVHRLDKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKHEEGKIEALIGRHPVDRKKMAVIEDGRYALTLYKVLERFKENTLVEAVIKTGRTHQIRVHMAYIGHPVVGDPVYGFKKQKFKLEGQALHSHVLGFMHPTKGVYMEFEAPLPEYFVRLIEILRNK
>NC_015958.1|WP_014062977.1|1487760_1488756_+|AIR-synthase
MEVGKVPVEILKRSVFPYLGVKRKEVLVHSQLGEDSSIIDFGEYVAVLSTDPITAADKLSGFLSVIISCNDLASCGAKPIGILSTIVLPEGTEEAILHGIMKEIDRAAKKLGIEVLGGHTEITSTVNKPIISTTAIGMAKKGEYITTKGAKIGDDVIVTKALGLEGTAILTTDYEDLLLKRYDKDFILKAQSFINEISVIEEGLTATQNGANAMHDITEGGILGAAYEIAEASGLGIKIYEEKLPIRPETKEICRFFGINPLKLISSGSMIITASDGDKIVKSLSEKGIQATIIGKIIKEGKYLITSKGKEEIIPPERDEIYLVNKERILL
>NC_015958.1|WP_004401205.1|1487003_1487540_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MKIKAEIMDEKAIDRALIRIAHEIVERNKGIEDVVLVGIKTRGVPLAERIARYISRIEGKKPPVGSLDITLYRDDLTTDLEQPVVKKKDIGVDVVGKIVVLVDDVIYTGRTIRAAMDAIIDLGRPKAIQLAELIDRGHRELPIKPDYVGKNVPTSKNEIVNVMLEEVDKVNRVVITEK
>NC_015958.1|WP_014062976.1|1485883_1486798_-|aspartate-carbamoyltransferase-catalytic-subunit
MDRKDLLGIKDLSKEEILELLDIAKEMKKILNGEKYSQILKGKTVVTIFFEPSTRTRLSFEMAAKYLGAHYGNIEVATSSVAKGESLIDTIRTVEMMKADVIITRHNMSGAPHLMAKYTDASIINAGDGINEHPTQALLDMMTIREKKKSFEGLKVAIIGDIMHSRVARSNIWGLKKMGAEVRVAGPSTLMPPQIEKMGVKAYYNVEEAIKDADVVMGLRIQLERQKSGLFPSIDEYREYFGINKERMKLAKADAILMHPGPINRNIEVTSEAANAEYSVIEEQVTNGVAVRMALLKILCERRN
>NC_015958.1|WP_014062975.1|1484586_1485882_-|dihydroorotase
MRMIIKNGTVIDGFGSEVKADILINYGIIKAIDKNIEISDAVVIDAAGKYVLPGFVDMHTHLRQPGFEEKETIKTGTEAAAAGGYTTVACMPNTNPTIDNEIVVEYVKSIAQREGVVKVLPIGAMTKGMKGEEITEMAKLKKAGAVALSDDGFPIMSAGLMKRIMTYGKMYDLLMITHCEDKTLSGEGVMNSGVISTMIGLKGIPREAEEVMLARNIILAKSTGVRIHIAHISTKGSVELIREAKEKGVKITAEVTPHNLTLTDEAVYNYDTNTKAYPPLRTREDIEALIEGLKDGTIDAIATDHAPHTKDDKKVPYDMAAFGISGLETAFSVINTFLVQTGKITIKELVNYMSINPANILGISSGIKVGKTADIVIVDPYEEYVVDKDKFKSKGKNTPFHGMKLKGVVEYTIVEGQIKYARDRKIEKIEV
>NC_015958.1|WP_014062974.1|1483603_1484527_-|orotidine-5'-phosphate-decarboxylase
MFIDNLIESIKAKKSPVVVGLDPRIEKTPQFIKDVAFKRKGENIEGISEALYLFNKGIIDAVYDVVPAVKIQVAFYEVYGIEGFKAFFKTAEYAKNLGLMVIADVKRGDIQEVAKMYSKAYLQNQLFDAITVNPYMGEDTIMPYVEDAIKYDKGIFALVKTSNKGSKDIQDIKTATGEYVYQRVAKIINKISKSAVGKYGYSSIGAVVGATYPEEAKVLRKEMPNCFFLVPGYGAQGGTVEDIMDCFDENGLGAIINSSRSVIYAYQSPYWKDVYSEYEYAQAARAEVILMTGMINNGLVKRKYIAC
>NC_015958.1|WP_083820897.1|1498007_1498400_-|ATP-binding-protein
MGALYSTYFIHFQELMSQLKKALAENRLEIRLKHFSKYKVLIIDEVGYLPIDTDASNIFFQLISKRYEKHSTIITTNMPFSNWAEVFGSATLANAILDRLLHHSHVISIKGPSYRLKSKVEYFNSSSNAS
>NC_015958.1|WP_014062983.1|1500037_1501213_-|IS21-family-transposase
MKNLLGEISIFKAMEIKPNFSELAREYGVDRRTVKKYYEGYEGKPKTRNKQSKLDKYYDEIKAKLEIKGVTVKGVYEYFVSKNYDIGTYSNFNKYVKRKGLKPTKKASGHPRFETPAGKQAQVDWKEDIKLVSRYGEEFVVNVFNYKLGYSRYCYFEYRKAKTQQDVVECLINAFKATGGVPEEILFDNMKTVVDITNDGRKINNKIKAFANDFGFKIRLCKPRHSYTKGKVESSNKFIDWLLPYNGEFENEEDLIKIIDEINKKVNQSTNQSTGIQPIILFQKEKEYLSPLPTNDIIESYMNFEQKATVHKDSMIYYKGSRYSVPPKYINKTVTLKTVENELHVYFNTDLISVHILSDKKINYHESHYRELMENLIKNREDIEQICTNNT
>NC_015958.1|WP_014062984.1|1501715_1502936_+|IS110-family-transposase
MDLVYSHVCGLDVHKKNVVACIITPEGKEISTFSTMTDDLIALKEFIKAKGCSVVAMESTGSYWKPIYNLLELESIKILLVNAKHIKNVPGRKTDVKDAEWIASLLQHGLLQGSFVPDREQRELRELVRYRKSLIEEKSRELNRIQKVLEGANIKLSSVVSDINGASSRSILEAIINGEENPETLAELSQGKLKNKMDELKRALKGLINHHQRMLLEIQLRHIDYLDEEIAKLDEEIKNRMLPFEKDLALLDTIPGVGRRTAEQIIAEIGTNMEQFPSAAHLCSWAGLCPGHNESAGKQKSARTRKGNQKLRSSLIEAARAASRAKDTYLSSQYHRIAARRGANRAAVAVAHSILIIVYHILKQKQPYIELGPTYYEEKKRNMIIRQSLKKLESLGLKVTVESAVS
>NC_015958.1|WP_003869602.1|1505962_1506331_-|large-conductance-mechanosensitive-channel-protein-MscL
MLKGFKEFIMRGNVLDLAVAVIIGAAFNKVVNSLVVDVLTPLIGAIFGAPDFSALKLGPIAIGNFLNAVVNFIIVSAAIYFFIVAPMNAIRQRKAKEKEQTPPEPSEEVKLLREILEVLKEK
>NC_015958.1|WP_014062985.1|1506468_1507224_-|sulfite-exporter-TauE/SafE-family-protein
MSNYVIILVASILAGATNAIAGGGTLITFPALVWVGVNPLSANITNTVALWTGSVTGAWGFKERLVKTKHLLKILIFPSLFGGILGAYLLMITPYKVFNFVVPFLVLFATIILALNDRINKFNLKEGEDIKKKSLVFVFILQFLTSLYGGYFAAGIGILMLATLGIAGITDIHTANGIKNLLSLFINVTSGLVLLFSGKVVWPFAFILMIGFALGGYWGAKVSQRFDNKKVKNFVVLWGIALAIAFWVRGV
>NC_015958.1|WP_014062986.1|1507223_1507844_-|nitroreductase-family-protein
MKECQKLITERRSITFFDTTKEISNDLIKEVLEVAATAPSANNLQPWEVIVVKYKEKKKILKEICFNQQKVEDASAVIVLIANPKTAFEHIDRVLDSSVELGYMPKERRESAKERVLEVWKDMEQAKRKSIRDTALFAMNIMIVARVYGLETHPMDGFSEEKMKEFLGIDVEKMVPMIIAIGYKDPEKDLLPRAYRFKFDEFGEII
>NC_015958.1|WP_014062987.1|1508104_1508569_+|sigma-70-family-RNA-polymerase-sigma-factor
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLHLDGIQEGKLKAYVLTAARNKYTDFLRKTKKDVTVSIIDVFPQSTFSEFQQIENKEVIKKAVNRLTPNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
>NC_015958.1|WP_014062988.1|1508569_1509529_+|hypothetical-protein
MGSDLNKPIGDIPFDEKAFLRKARFKSILRIIIISLIIAIGAFVLTFIVPEMMLQNQENRIDSFYPDIIKFTEPNTFAISGESYNVRLFGRQKEYYLLRLIGNKPYPAGIVTVDFDIWGGEQFKGDKSFCVIETDHIIPYSKISTAIPEGTKEYLAPYAVPKLKFYNPAVKYDKVIREFDVLKNIPNDNLVEMALSFDRPLTLSEIKTIIPEDLKLMWGAVLVYEEKDYKQRSYLAERLVGNPYVNSLNGEKEFLKELERLSNVQSYSSTNLKRTVNFLKENGIKYYGVVVVGHPESLQELSSNSIITGAVLGIVTEPY
>NC_015958.1|WP_014062989.1|1509572_1510844_-|copper-amine-oxidase
MLKKISLILLVFVAFSILIPISAQAANITITINGQNVVFEQKPVIKNDTTLVPMRAFFEALGAKVNWEEKTKTVTAFRGETTVQLIIGHKIAKVNGKSYELIVAPQIINGYTYVPLRFVGETLGDEVIYDNGHIIINSSNQRTRVSSITAPKNTVSETNTFSSSNITSEKDLYLLIKNALENNEDEITFTLSNSFYNSVRSSGTVNDILNSISDIVDLILAHHPEIGYANKWTISANSFNNVISKVSIKFEYIYPKDKLEKMKDEVYIKAKEIISQIIKPDMSDIDKVKAIHDYIVKNTKYDYENLINNTIPPESYTAYGVLIKGVGVCQGYAAAFNLLAQLAGIDSIGVAGTGFNYSGSMPHAWNMIRIDGKISYVDVTWDDPVPDQGDNVRYDYFNVTEEQLAKDHSWDKEKFLEKYFDYK
>NC_015958.1|WP_004401462.1|1511223_1511409_-|PspC-domain-containing-protein
MSKKLYRSRTQRMIGGVCGGIAEYFNVDPTIIRLIWAFLIIFWGTGLLAYLIAWIIIPEEP

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Crispr_ID: NC_015958_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015958_3

1503022-1505765

Orphan

Consensus_repeat	Method
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CRISPRCasFinder
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CRT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	PILER-CR

41 spacers

The CRISPR arrays of NC_015958_3

>merge|NC_015958|3|1503022-1505765|CRISPRCasFinder,CRT,PILER-CR
CACTATTTTCAGGATAGGTAGGCTAAAAACATGTTAGGAGTAGAAGACAAGTATCAGGAGAACGACATCTTTCAATTCCTTATAGGTAGGCTAAAAACAATGGTTAAGTTGTGTTTTGTGAAGTAAAGGCCCTGCTTTCAATTCCTTATAGGTAGGCTAAAAACTTGAGCAAAAAGAATTTTTAGCTTTTGTGGATTACAGCTTTCAATTCCTTATAGGTAGGCTAAAAACTACCATCCTCAATTGCGTAAACTTCAAGTGGGTACATCTTTCAATTCCTTATAGGTAGGCTAAAAACTTTTAAATCAAACATCTTCCACCACCCCTCCTATATCTTTCAATTCCTTATAGGTAGGCTAAAAACCAAGCATTGGTAATGTTATACCTATCGCAAGTGCATCTTTCAATTCCTTATAGGTAGGCTAAAAACGCAAAAATATCGTGACAAATTCTACAAAGTTGCATTCTTTCAATTCCTTATAGGTAGGCTAAAAACACATTGAAATTACAGATAAACCAAGCATTATCCCTTCTTTCAATTCCTTATAGGTAGGCTAAAAACGAGGGCTAGCAAGCCCTTTTTATTTTATGTTCATGACTTTCAATTCCTTATAGGTAGGCTAAAAACTCTGTTAGCCATATATTATCTTTTGAGGAAATTTGTCTTTCAATTCCTTATAGGTAGGCTAAAAACGCACAGGCAGGAAGAAAGTTTGTCATACGTGAGAACTTTCAATTCCTTATAGGTAGGCTAAAAACGTCCCGGCAAAGATGCGGACAAGTGGATGCCAAACTCTTTCAATTCCTTATAGGTAGGCTAAAAACTGTGTGACGATGTCTTTTACGATAGCGCCCAAAGTTCTTTCAATTCCTTATAGGTAGGCTAAAAACTACGAAATGCTACTACAACTAAAGGACGATATATCCTTTCAATTCCTTATAGGTAGGCTAAAAACACGTTATAGCAGAACCAACGCCAGAAATAACACCATCTTTCAATTCCTTATAGGTAGGCTAAAAACCGAAAGCTGGCTTCATTATAGCACCAAATGTCATATCTTTCAATTCCTTATAGGTAGGCTAAAAACCAAATTCCCTTAAATCTTCATCTTTTACTAGTCGCACTTTCAATTCCTTATAGGTAGGCTAAAAACGATGGAATAAAAGGGAAGAAAGAAAAGTATATTGGAGTCTTTCAATTCCTTATAGGTAGGCTAAAAACTCAAGGGTGGGATAAATATGACAGACTTCATATATACTTTCAATTCCTTATAGGTAGGCTAAAAACTTGTATGGCCCTTCGGGGCCTCTTTTTTTATGCCTTCTTTCAATTCCTTATAGGTAGGCTAAAAACAATAAAAGAGTAAAGAATATAAGAATATATGCATATACTTTCAATTCCTTATAGGTAGGCTAAAAACTTGGTAGGCGAAGACGGATTCGCCTACATAGACGATGCTTTCAATTCCTTATAGGTAGGCTAAAAACTCTGTTTAGTTTTTCTCTGCTTATCTCAGATAAAAACTTTCAATTCCTTATAGGTAGGCTAAAAACCAATTTTGTTTTTTAATTCATCTGACAGTGTGTGTACTTTCAATTCCTTATAGGTAGGCTAAAAACGTATTATCTTTAAAAGCCTCGGCAAACTTCCATATTACCTTTCAATTCCTTATAGGTAGGCTAAAAACTCGGCATCAAGTGTTAGTTGTAAAATACCATACCCATCTTTCAATTCCTTATAGGTAGGCTAAAAACTATTGTAGACGAAATGTCAATGGTGGGGAATGATGCTTTCAATTCCTTATAGGTAGGCTAAAAACGTATGCACTATATGGCGGTCACAGGAGCAAAAAAACTTTCAATTCCTTATAGGTAGGCTAAAAACCAATTTTCCTTTGTTCTTCTTTCCTTCTAGCTAGCTTTCAATTCCTTATAGGTAGGCTAAAAACCAAAAATATATTTAAAGCCATTAAAAAGCTTGCAGACTTTCAATTCCTTATAGGTAGGCTAAAAACTATTTAGCCTCCCCTCTTATATAGTCTCCTATCCAGCTTTCAATTCCTTATAGGTAGGCTAAAAACTTGTTGAGCCAAGGTACTGTACGGAACTGTACTGTGCTTTCAATTCCTTATAGGTAGGCTAAAAACTTAGGATAATTAAGGCTATTGAAGAAGAAGAAAACAACTTTCAATTCCTTATAGGTAGGCTAAAAACCAACAACATCAGGAACAGCTACAGTAACAGCTTCATGCTTTCAATTCCTTATAGGTAGGCTAAAAACAAGATGATGAAATTGAAATATACATAGATAAATTCGTCTTTCAATTCCTTATAGGTAGGCTAAAAACTATAAATGTGTGGAATGCTCAAGAAAGAGCATTTTACTTTCAATTCCTTATAGGTAGGCTAAAAACTTATAAGCTTTTTGAGGTTTATGTCAGACGAGCTACTTTCAATTCCTTATAGGTAGGCTAAAAACCTATACCGCAAATATAAGGCGGTGGCATAGATGTACTTTCAATTCCTTATAGGTAGGCTAAAAACTCGGCCATCTTCTATATTGATTAGCCACTGCATCCCAGCTTTCAATTCCTTATAGGTAGGCTAAAAACGAGAATTAGAATTATACAAAAGCATTTATAAAAAGTCTTTCAATTCCTTATAGGTAGGCTAAAAACCCACAATCTTATACCTTGCCATTTTAACCCTCCCTTCTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015958|3|3|1503022-1505765|CRISPRCasFinder
CACTATTTTCAGGATAGGTAGGCTAAAAAC	ATGTTAGGAGTAGAAGACAAGTATCAGGAGAACGACAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATGGTTAAGTTGTGTTTTGTGAAGTAAAGGCCCTG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGAGCAAAAAGAATTTTTAGCTTTTGTGGATTACAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACCATCCTCAATTGCGTAAACTTCAAGTGGGTACAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTAAATCAAACATCTTCCACCACCCCTCCTATAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAGCATTGGTAATGTTATACCTATCGCAAGTGCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAAAAATATCGTGACAAATTCTACAAAGTTGCATT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACATTGAAATTACAGATAAACCAAGCATTATCCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGGCTAGCAAGCCCTTTTTATTTTATGTTCATGA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGTTAGCCATATATTATCTTTTGAGGAAATTTGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCACAGGCAGGAAGAAAGTTTGTCATACGTGAGAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTCCCGGCAAAGATGCGGACAAGTGGATGCCAAACT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTGTGACGATGTCTTTTACGATAGCGCCCAAAGTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACGAAATGCTACTACAACTAAAGGACGATATATC
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACGTTATAGCAGAACCAACGCCAGAAATAACACCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAAAGCTGGCTTCATTATAGCACCAAATGTCATAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAATTCCCTTAAATCTTCATCTTTTACTAGTCGCA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GATGGAATAAAAGGGAAGAAAGAAAAGTATATTGGAGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCAAGGGTGGGATAAATATGACAGACTTCATATATA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTATGGCCCTTCGGGGCCTCTTTTTTTATGCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAAAAGAGTAAAGAATATAAGAATATATGCATATA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGGTAGGCGAAGACGGATTCGCCTACATAGACGATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGTTTAGTTTTTCTCTGCTTATCTCAGATAAAAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAATTTTGTTTTTTAATTCATCTGACAGTGTGTGTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTATTATCTTTAAAAGCCTCGGCAAACTTCCATATTAC
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGGCATCAAGTGTTAGTTGTAAAATACCATACCCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTGTAGACGAAATGTCAATGGTGGGGAATGATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTATGCACTATATGGCGGTCACAGGAGCAAAAAAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAATTTTCCTTTGTTCTTCTTTCCTTCTAGCTAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAAAATATATTTAAAGCCATTAAAAAGCTTGCAGA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTTAGCCTCCCCTCTTATATAGTCTCCTATCCAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTTGAGCCAAGGTACTGTACGGAACTGTACTGTG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAGGATAATTAAGGCTATTGAAGAAGAAGAAAACAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAACAACATCAGGAACAGCTACAGTAACAGCTTCATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAGATGATGAAATTGAAATATACATAGATAAATTCGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATAAATGTGTGGAATGCTCAAGAAAGAGCATTTTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAAGCTTTTTGAGGTTTATGTCAGACGAGCTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATACCGCAAATATAAGGCGGTGGCATAGATGTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGGCCATCTTCTATATTGATTAGCCACTGCATCCCAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGAATTAGAATTATACAAAAGCATTTATAAAAAGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCACAATCTTATACCTTGCCATTTTAACCCTCCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015958|3|1|1503022-1505765|CRT
CACTATTTTCAGGATAGGTAGGCTAAAAAC	ATGTTAGGAGTAGAAGACAAGTATCAGGAGAACGACAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATGGTTAAGTTGTGTTTTGTGAAGTAAAGGCCCTG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGAGCAAAAAGAATTTTTAGCTTTTGTGGATTACAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACCATCCTCAATTGCGTAAACTTCAAGTGGGTACAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTAAATCAAACATCTTCCACCACCCCTCCTATAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAGCATTGGTAATGTTATACCTATCGCAAGTGCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAAAAATATCGTGACAAATTCTACAAAGTTGCATT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACATTGAAATTACAGATAAACCAAGCATTATCCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGGCTAGCAAGCCCTTTTTATTTTATGTTCATGA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGTTAGCCATATATTATCTTTTGAGGAAATTTGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCACAGGCAGGAAGAAAGTTTGTCATACGTGAGAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTCCCGGCAAAGATGCGGACAAGTGGATGCCAAACT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTGTGACGATGTCTTTTACGATAGCGCCCAAAGTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACGAAATGCTACTACAACTAAAGGACGATATATC
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACGTTATAGCAGAACCAACGCCAGAAATAACACCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAAAGCTGGCTTCATTATAGCACCAAATGTCATAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAATTCCCTTAAATCTTCATCTTTTACTAGTCGCA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GATGGAATAAAAGGGAAGAAAGAAAAGTATATTGGAGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCAAGGGTGGGATAAATATGACAGACTTCATATATA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTATGGCCCTTCGGGGCCTCTTTTTTTATGCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAAAAGAGTAAAGAATATAAGAATATATGCATATA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGGTAGGCGAAGACGGATTCGCCTACATAGACGATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGTTTAGTTTTTCTCTGCTTATCTCAGATAAAAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAATTTTGTTTTTTAATTCATCTGACAGTGTGTGTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTATTATCTTTAAAAGCCTCGGCAAACTTCCATATTAC
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGGCATCAAGTGTTAGTTGTAAAATACCATACCCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTGTAGACGAAATGTCAATGGTGGGGAATGATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTATGCACTATATGGCGGTCACAGGAGCAAAAAAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAATTTTCCTTTGTTCTTCTTTCCTTCTAGCTAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAAAATATATTTAAAGCCATTAAAAAGCTTGCAGA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTTAGCCTCCCCTCTTATATAGTCTCCTATCCAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTTGAGCCAAGGTACTGTACGGAACTGTACTGTG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAGGATAATTAAGGCTATTGAAGAAGAAGAAAACAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAACAACATCAGGAACAGCTACAGTAACAGCTTCATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAGATGATGAAATTGAAATATACATAGATAAATTCGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATAAATGTGTGGAATGCTCAAGAAAGAGCATTTTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAAGCTTTTTGAGGTTTATGTCAGACGAGCTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATACCGCAAATATAAGGCGGTGGCATAGATGTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGGCCATCTTCTATATTGATTAGCCACTGCATCCCAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGAATTAGAATTATACAAAAGCATTTATAAAAAGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCACAATCTTATACCTTGCCATTTTAACCCTCCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015958|3|1|1503090-1505765|PILER-CR
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATGGTTAAGTTGTGTTTTGTGAAGTAAAGGCCCTG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGAGCAAAAAGAATTTTTAGCTTTTGTGGATTACAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACCATCCTCAATTGCGTAAACTTCAAGTGGGTACAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTAAATCAAACATCTTCCACCACCCCTCCTATAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAGCATTGGTAATGTTATACCTATCGCAAGTGCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAAAAATATCGTGACAAATTCTACAAAGTTGCATT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACATTGAAATTACAGATAAACCAAGCATTATCCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGGCTAGCAAGCCCTTTTTATTTTATGTTCATGA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGTTAGCCATATATTATCTTTTGAGGAAATTTGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCACAGGCAGGAAGAAAGTTTGTCATACGTGAGAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTCCCGGCAAAGATGCGGACAAGTGGATGCCAAACT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTGTGACGATGTCTTTTACGATAGCGCCCAAAGTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TACGAAATGCTACTACAACTAAAGGACGATATATC
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACGTTATAGCAGAACCAACGCCAGAAATAACACCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CGAAAGCTGGCTTCATTATAGCACCAAATGTCATAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAATTCCCTTAAATCTTCATCTTTTACTAGTCGCA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GATGGAATAAAAGGGAAGAAAGAAAAGTATATTGGAGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCAAGGGTGGGATAAATATGACAGACTTCATATATA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTATGGCCCTTCGGGGCCTCTTTTTTTATGCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAAAAGAGTAAAGAATATAAGAATATATGCATATA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGGTAGGCGAAGACGGATTCGCCTACATAGACGATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGTTTAGTTTTTCTCTGCTTATCTCAGATAAAAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAATTTTGTTTTTTAATTCATCTGACAGTGTGTGTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTATTATCTTTAAAAGCCTCGGCAAACTTCCATATTAC
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGGCATCAAGTGTTAGTTGTAAAATACCATACCCAT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTGTAGACGAAATGTCAATGGTGGGGAATGATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTATGCACTATATGGCGGTCACAGGAGCAAAAAAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAATTTTCCTTTGTTCTTCTTTCCTTCTAGCTAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAAAAATATATTTAAAGCCATTAAAAAGCTTGCAGA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATTTAGCCTCCCCTCTTATATAGTCTCCTATCCAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTTGAGCCAAGGTACTGTACGGAACTGTACTGTG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAGGATAATTAAGGCTATTGAAGAAGAAGAAAACAA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAACAACATCAGGAACAGCTACAGTAACAGCTTCATG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAGATGATGAAATTGAAATATACATAGATAAATTCGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATAAATGTGTGGAATGCTCAAGAAAGAGCATTTTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAAGCTTTTTGAGGTTTATGTCAGACGAGCTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTATACCGCAAATATAAGGCGGTGGCATAGATGTA
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGGCCATCTTCTATATTGATTAGCCACTGCATCCCAG
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGAATTAGAATTATACAAAAGCATTTATAAAAAGT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCACAATCTTATACCTTGCCATTTTAACCCTCCCTT
CTTTCAATTCCTTATAGGTAGGCTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015958.1\|WP_083820897.1\|1498007_1498400_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NC_015958.1\|WP_014062981.1\|1491547_1494028_-\|DUF2357-domain-containing-protein	unknown	unknown	gnl\|CDD\|286861
NC_015958.1\|WP_014062983.1\|1500037_1501213_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015958.1\|WP_014062979.1\|1490040_1490475_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237817
NC_015958.1\|WP_014062980.1\|1490669_1491248_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_015958.1\|WP_014062987.1\|1508104_1508569_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_015958.1\|WP_041589216.1\|1512029_1512650_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|274340
NC_015958.1\|WP_014062978.1\|1489118_1490036_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_015958.1\|WP_003869602.1\|1505962_1506331_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605
NC_015958.1\|WP_014062985.1\|1506468_1507224_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_015958.1\|WP_014062986.1\|1507223_1507844_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NC_015958.1\|WP_004401205.1\|1487003_1487540_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl\|CDD\|235365
NC_015958.1\|WP_014062989.1\|1509572_1510844_-\|copper-amine-oxidase	unknown	unknown	gnl\|CDD\|377924
NC_015958.1\|WP_014062991.1\|1512665_1512977_-\|hypothetical-protein	unknown	unknown	unknown
NC_015958.1\|WP_014062982.1\|1494002_1495754_-\|DUF3578-domain-containing-protein	unknown	unknown	gnl\|CDD\|371900
NC_015958.1\|WP_014062977.1\|1487760_1488756_+\|AIR-synthase	unknown	unknown	gnl\|CDD\|100037
NC_015958.1\|WP_014062988.1\|1508569_1509529_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379376
NC_015958.1\|WP_003869608.1\|1511589_1512006_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NC_015958.1\|WP_014062984.1\|1501715_1502936_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_015958.1\|WP_004401462.1\|1511223_1511409_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200

Protein	Function_ID	Function_description	E-value
NC_015958.1\|WP_083820897.1\|1498007_1498400_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	6.17657e-43
NC_015958.1\|WP_014062981.1\|1491547_1494028_-\|DUF2357-domain-containing-protein	gnl\|CDD\|286861	pfam09823, DUF2357, Domain of unknown function (DUF2357). This entry was previously the N terminal portion of DUF524 (pfam04411) before it was split into two. This domain has no known function. It is predicted to adopt an all beta secondary structure pattern followed by mainly alpha-helical structures.	5.23729e-53
NC_015958.1\|WP_014062983.1\|1500037_1501213_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.98587e-27
NC_015958.1\|WP_014062979.1\|1490040_1490475_-\|signal-peptidase-II	gnl\|CDD\|237817	PRK14791, PRK14791, lipoprotein signal peptidase; Provisional.	5.60871e-56
NC_015958.1\|WP_014062980.1\|1490669_1491248_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.68146e-41
NC_015958.1\|WP_014062987.1\|1508104_1508569_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.02105e-24
NC_015958.1\|WP_041589216.1\|1512029_1512650_-\|molecular-chaperone-DnaK	gnl\|CDD\|274340	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General].	2.66342e-63
NC_015958.1\|WP_014062978.1\|1489118_1490036_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.29113e-125
NC_015958.1\|WP_003869602.1\|1505962_1506331_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	7.30497e-47
NC_015958.1\|WP_014062985.1\|1506468_1507224_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.31711e-24
NC_015958.1\|WP_014062986.1\|1507223_1507844_-\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	4.76837e-48
NC_015958.1\|WP_004401205.1\|1487003_1487540_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	4.06874e-98
NC_015958.1\|WP_014062989.1\|1509572_1510844_-\|copper-amine-oxidase	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	1.66726e-31
NC_015958.1\|WP_014062982.1\|1494002_1495754_-\|DUF3578-domain-containing-protein	gnl\|CDD\|371900	pfam12102, DUF3578, Domain of unknown function (DUF3578). This presumed domain is functionally uncharacterized. This domain is found in bacteria and archaea. This domain is typically between 177 to 191 amino acids in length.	1.40135e-61
NC_015958.1\|WP_014062977.1\|1487760_1488756_+\|AIR-synthase	gnl\|CDD\|100037	cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.	1.49073e-134
NC_015958.1\|WP_014062988.1\|1508569_1509529_+\|hypothetical-protein	gnl\|CDD\|379376	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal. This domain is found near the N-terminus of a sigma factor regulator. The N-terminus is responsible for interaction with the sigma factor.	9.83534e-25
NC_015958.1\|WP_003869608.1\|1511589_1512006_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	3.86719e-62
NC_015958.1\|WP_014062984.1\|1501715_1502936_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	6.59674e-41
NC_015958.1\|WP_004401462.1\|1511223_1511409_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	1.53786e-27

>NC_015958.1|WP_014062984.1|1501715_1502936_+|IS110-family-transposase
MDLVYSHVCGLDVHKKNVVACIITPEGKEISTFSTMTDDLIALKEFIKAKGCSVVAMESTGSYWKPIYNLLELESIKILLVNAKHIKNVPGRKTDVKDAEWIASLLQHGLLQGSFVPDREQRELRELVRYRKSLIEEKSRELNRIQKVLEGANIKLSSVVSDINGASSRSILEAIINGEENPETLAELSQGKLKNKMDELKRALKGLINHHQRMLLEIQLRHIDYLDEEIAKLDEEIKNRMLPFEKDLALLDTIPGVGRRTAEQIIAEIGTNMEQFPSAAHLCSWAGLCPGHNESAGKQKSARTRKGNQKLRSSLIEAARAASRAKDTYLSSQYHRIAARRGANRAAVAVAHSILIIVYHILKQKQPYIELGPTYYEEKKRNMIIRQSLKKLESLGLKVTVESAVS
>NC_015958.1|WP_014062983.1|1500037_1501213_-|IS21-family-transposase
MKNLLGEISIFKAMEIKPNFSELAREYGVDRRTVKKYYEGYEGKPKTRNKQSKLDKYYDEIKAKLEIKGVTVKGVYEYFVSKNYDIGTYSNFNKYVKRKGLKPTKKASGHPRFETPAGKQAQVDWKEDIKLVSRYGEEFVVNVFNYKLGYSRYCYFEYRKAKTQQDVVECLINAFKATGGVPEEILFDNMKTVVDITNDGRKINNKIKAFANDFGFKIRLCKPRHSYTKGKVESSNKFIDWLLPYNGEFENEEDLIKIIDEINKKVNQSTNQSTGIQPIILFQKEKEYLSPLPTNDIIESYMNFEQKATVHKDSMIYYKGSRYSVPPKYINKTVTLKTVENELHVYFNTDLISVHILSDKKINYHESHYRELMENLIKNREDIEQICTNNT
>NC_015958.1|WP_083820897.1|1498007_1498400_-|ATP-binding-protein
MGALYSTYFIHFQELMSQLKKALAENRLEIRLKHFSKYKVLIIDEVGYLPIDTDASNIFFQLISKRYEKHSTIITTNMPFSNWAEVFGSATLANAILDRLLHHSHVISIKGPSYRLKSKVEYFNSSSNAS
>NC_015958.1|WP_014062982.1|1494002_1495754_-|DUF3578-domain-containing-protein
MSLKTLFKEVMDNYIKARTSQPFKGNRIGDILRKEIPQEIQKFDFIGDEYFIKGSNGQGNWAEIPWVAIMDKNITQTTMEGVYIVYLFSSDMKRLYLTLNQGYTKLKDKYGKFGAIEKMLSLASKIRSKIEAKGWNTDNNLPIGNEFYEKGTIFYKKYENDDLPDDETLKNDLHDLINIYKNVSVLSGEDKDQIYENEEDYIPDNDTSYNVKDELDYIKSYIKNQGFSYNDKLIENFYLSLKSKPFLILAGISGTGKSKLARLFAEAIGCNTKNGRFMLVPVRPDWSDSTELLGYKDMHNKFHPGVLTNFIKRAINDINKPYFFVLDEMNLARVEYYFSDILSIIESRKKDGDRIVTDPLLNKELLDEDSFHEYGNLYIPENLYFIGTVNMDETTFPFSKKVLDRANVIEFSDVNLDYFVGDIEEITEKVLNNSFLKSEFLTLNDCLDYREIIDDVILVLKKINDVLREGNLHFGYRVRDEISFYMIYNELNGLMDFDEALDLEILQKILPRIHGSSISIKKILIELFKICSGNYEAKYEYEDMDVSDKMLKDMDNCVYPRSAEKIIYMVRRYEEDGFTSYWL
>NC_015958.1|WP_014062981.1|1491547_1494028_-|DUF2357-domain-containing-protein
MDLRHTGSDVDLLYISTPKFDFSIKSNPYHPNVGALDINKNIKAKIYISCTEYTAEIYSPIENKMVPYTGDSYPLFYEQQNYEIVIEKKTDDDVLFWHENINIRNKVRFVGASKRVLSGIINFKNDIGYSELIMLVNNREYLKVTIEVFPSKIDYQKDYYALLQDINNELYNLTFDFYKRTYFYSMTKNKVGNSLTEFFAIINQVFDKLNKSIMIVLNMPHHVLKKDREILKYYTAKRVDREGIKWINKHPQYVKNINGEIIVDKVFSVKSSITYDTYENRLVKYIIKSIIKKLNLVKKNYEKESSIVDENIKKSIEAMIYKLGRHLNYSFLKDVGDIYTMNSLSLVLNMAPGYKDVYKYYIMLLKGLMIREYIFKISMKDLAILYEYWCFIKLNSILREKYSLVKQGIIKFNNRGLTVTLTKGEETRVEYQNPKNGEIYSLVYNKKFRYDNIPTTPQMPDSILSLSKVGSNTIFKYVLDAKYKINPAVVDTDYYNKYRSPGPEEEDINTMHRYRDAIVYENKNNKNFEKMVFGAFILFPYSDEEKYKEHHFYKSIEKVNVGGLPFLPGSTKLVEKLIDDLINNSFESAFEDSVFQGGTYEYLDQVKFDDKEVLVAPLSSKEQLEINLKYNFYHIPYKNIKSSGIKFKYVAIYQSIKKFDKEAGIHYYGRIKGFEIVKRKDIKEIPKDSDELYVKFEIEKWKKLEIPITCGPFGVTNRIYTNLFLLKNAKNVSELCIKTKEDYRLYLELKRLYEHQEEFLKVNINSKMIDENTKITGFKIGNLTIFINEGYYYIYKDDILRDKIPIEEFSKRPNAIIKRIRREIQQ
>NC_015958.1|WP_014062980.1|1490669_1491248_+|Uma2-family-endonuclease
MEFPIKHNIYTYSDYLKLEDGERVELIEGNFVAMSPSPSRIHQKIITEVSRVIGNFIKEKNLECEVYVAPFDVRLIDKDETEENCKNVVQPDISVICDKSKLDDKGLKGAPDFIIEVVSPSNVSIDYVKKLYLYEKFKVKEYWIVNPVSKNIFVYKLDEKGQYSEPEKYTIEDTIKVNIFKKLEINIAKLIK
>NC_015958.1|WP_014062979.1|1490040_1490475_-|signal-peptidase-II
MEIIIVAFVVLLDQVTKYLAVKYLMPIWSYPVIKNFLHLTYVENKGAAFGMLQNKTLFFIVITVIVGAVLIYSMIKLPENSVYNYTLAMILGGAIGNLIDRVRLGYVVDFIDFKFFPAVFNVADSFIVIGAIILGYLMIFMEKA
>NC_015958.1|WP_014062978.1|1489118_1490036_-|RluA-family-pseudouridine-synthase
MNVVDKIVLQGEKEDEGKRIDVFLAAELDYTRSYIKKLIVDELVFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHCKNLSGINGILRPGIVHRLDKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKHEEGKIEALIGRHPVDRKKMAVIEDGRYALTLYKVLERFKENTLVEAVIKTGRTHQIRVHMAYIGHPVVGDPVYGFKKQKFKLEGQALHSHVLGFMHPTKGVYMEFEAPLPEYFVRLIEILRNK
>NC_015958.1|WP_014062977.1|1487760_1488756_+|AIR-synthase
MEVGKVPVEILKRSVFPYLGVKRKEVLVHSQLGEDSSIIDFGEYVAVLSTDPITAADKLSGFLSVIISCNDLASCGAKPIGILSTIVLPEGTEEAILHGIMKEIDRAAKKLGIEVLGGHTEITSTVNKPIISTTAIGMAKKGEYITTKGAKIGDDVIVTKALGLEGTAILTTDYEDLLLKRYDKDFILKAQSFINEISVIEEGLTATQNGANAMHDITEGGILGAAYEIAEASGLGIKIYEEKLPIRPETKEICRFFGINPLKLISSGSMIITASDGDKIVKSLSEKGIQATIIGKIIKEGKYLITSKGKEEIIPPERDEIYLVNKERILL
>NC_015958.1|WP_004401205.1|1487003_1487540_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MKIKAEIMDEKAIDRALIRIAHEIVERNKGIEDVVLVGIKTRGVPLAERIARYISRIEGKKPPVGSLDITLYRDDLTTDLEQPVVKKKDIGVDVVGKIVVLVDDVIYTGRTIRAAMDAIIDLGRPKAIQLAELIDRGHRELPIKPDYVGKNVPTSKNEIVNVMLEEVDKVNRVVITEK
>NC_015958.1|WP_003869602.1|1505962_1506331_-|large-conductance-mechanosensitive-channel-protein-MscL
MLKGFKEFIMRGNVLDLAVAVIIGAAFNKVVNSLVVDVLTPLIGAIFGAPDFSALKLGPIAIGNFLNAVVNFIIVSAAIYFFIVAPMNAIRQRKAKEKEQTPPEPSEEVKLLREILEVLKEK
>NC_015958.1|WP_014062985.1|1506468_1507224_-|sulfite-exporter-TauE/SafE-family-protein
MSNYVIILVASILAGATNAIAGGGTLITFPALVWVGVNPLSANITNTVALWTGSVTGAWGFKERLVKTKHLLKILIFPSLFGGILGAYLLMITPYKVFNFVVPFLVLFATIILALNDRINKFNLKEGEDIKKKSLVFVFILQFLTSLYGGYFAAGIGILMLATLGIAGITDIHTANGIKNLLSLFINVTSGLVLLFSGKVVWPFAFILMIGFALGGYWGAKVSQRFDNKKVKNFVVLWGIALAIAFWVRGV
>NC_015958.1|WP_014062986.1|1507223_1507844_-|nitroreductase-family-protein
MKECQKLITERRSITFFDTTKEISNDLIKEVLEVAATAPSANNLQPWEVIVVKYKEKKKILKEICFNQQKVEDASAVIVLIANPKTAFEHIDRVLDSSVELGYMPKERRESAKERVLEVWKDMEQAKRKSIRDTALFAMNIMIVARVYGLETHPMDGFSEEKMKEFLGIDVEKMVPMIIAIGYKDPEKDLLPRAYRFKFDEFGEII
>NC_015958.1|WP_014062987.1|1508104_1508569_+|sigma-70-family-RNA-polymerase-sigma-factor
MWQDLYKAAFYYLLKLGVPQADAEDIAQEALLSTYLHLDGIQEGKLKAYVLTAARNKYTDFLRKTKKDVTVSIIDVFPQSTFSEFQQIENKEVIKKAVNRLTPNEQKLFYLKFILEMSNEEISSYLKTNSNTVKTMVWRLRKKLKEYLKEEEKS
>NC_015958.1|WP_014062988.1|1508569_1509529_+|hypothetical-protein
MGSDLNKPIGDIPFDEKAFLRKARFKSILRIIIISLIIAIGAFVLTFIVPEMMLQNQENRIDSFYPDIIKFTEPNTFAISGESYNVRLFGRQKEYYLLRLIGNKPYPAGIVTVDFDIWGGEQFKGDKSFCVIETDHIIPYSKISTAIPEGTKEYLAPYAVPKLKFYNPAVKYDKVIREFDVLKNIPNDNLVEMALSFDRPLTLSEIKTIIPEDLKLMWGAVLVYEEKDYKQRSYLAERLVGNPYVNSLNGEKEFLKELERLSNVQSYSSTNLKRTVNFLKENGIKYYGVVVVGHPESLQELSSNSIITGAVLGIVTEPY
>NC_015958.1|WP_014062989.1|1509572_1510844_-|copper-amine-oxidase
MLKKISLILLVFVAFSILIPISAQAANITITINGQNVVFEQKPVIKNDTTLVPMRAFFEALGAKVNWEEKTKTVTAFRGETTVQLIIGHKIAKVNGKSYELIVAPQIINGYTYVPLRFVGETLGDEVIYDNGHIIINSSNQRTRVSSITAPKNTVSETNTFSSSNITSEKDLYLLIKNALENNEDEITFTLSNSFYNSVRSSGTVNDILNSISDIVDLILAHHPEIGYANKWTISANSFNNVISKVSIKFEYIYPKDKLEKMKDEVYIKAKEIISQIIKPDMSDIDKVKAIHDYIVKNTKYDYENLINNTIPPESYTAYGVLIKGVGVCQGYAAAFNLLAQLAGIDSIGVAGTGFNYSGSMPHAWNMIRIDGKISYVDVTWDDPVPDQGDNVRYDYFNVTEEQLAKDHSWDKEKFLEKYFDYK
>NC_015958.1|WP_004401462.1|1511223_1511409_-|PspC-domain-containing-protein
MSKKLYRSRTQRMIGGVCGGIAEYFNVDPTIIRLIWAFLIIFWGTGLLAYLIAWIIIPEEP
>NC_015958.1|WP_003869608.1|1511589_1512006_+|YjbQ-family-protein
MKSYRKELWFETKKRREFINITPLIEECVRESGIKEGLLLCNAMHITSSVFINDDEPGLHKDFENFLEKLAPEKPYDQYYHNTYEDNADAHLKRTIMGREVVVAITDGKLDFGPWEQIFYGEFDGKRKKRVLVKIIGE
>NC_015958.1|WP_041589216.1|1512029_1512650_-|molecular-chaperone-DnaK
MDSEKLEHFRQLLLKEKERVLSTINQMNYNDGIGGIAQREYYQELSLLDNHPADFGSEVYEVEKNYALKDNEKHILRQVEDAFKRMEMGTYGICTHCHKPIEEERLEALPYTALCAECAKNNDLELNDLKNSRPNEERMIKYPFGWGYKDLKGEIQFDAEDSYQEVARFNKTKSGLDNYDDDYDDENAGYVEETDKISNEDYKKTL
>NC_015958.1|WP_014062991.1|1512665_1512977_-|hypothetical-protein
MNKDEYKNNNNIMLTAIKKQLDQMSEMMEKMKIADYVELMQSPYRLLWLNFIGGVARGFGIAVGFTILGAIVLYILQKLVVLNLPLIGSIIADIVKIVNQKLY

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Crispr_ID: NC_015958_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015958_4

2673398-2679131

Unclear

Consensus_repeat	Method
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CRISPRCasFinder
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CRT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	PILER-CR

86 spacers

cas4,cas1,cas2,cas3,cas5,cas7b,cas6

The CRISPR arrays of NC_015958_4

>merge|NC_015958|4|2673398-2679131|CRISPRCasFinder,CRT,PILER-CR
CACTATTTTCAGGATAGGTAGGCTAAAAACGCAGTATTGCTCCAGGAATTCCCGTATCATTACCTTGGTTTCAATTCCTTATAGGTAGGCTAAAAACTCTCAGGATTTTACAATAGTAATACAATTTTAAGTTGTTTCAATTCCTTATAGGTAGGCTAAAAACATAATAGTAATAGAATATAATTAGCAAGATAAAAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACTCTTCATCCGCCCATCACCCCAAGCCTGTCATTTTCGTTTCAATTCCTTATAGGTAGGCTAAAAACGTAGCAACCTTTGCCATACCATTTTCAAAGTCGATACGTTTCAATTCCTTATAGGTAGGCTAAAAACTATCTGCTCCCCAAGCATAATAGGTCGCAGCTGTTAGTTTCAATTCCTTATAGGTAGGCTAAAAACCCCGCCCATCGCACCATTTAGCACCGCTATCCCCGGTTTCAATTCCTTATAGGTAGGCTAAAAACAGACGGCATAGTGCGTGTAGAAGGGCCTTCATACCTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTGCTTGTAGAATACCAGCCCAGTATCTAAACATAGTTTCAATTCCTTATAGGTAGGCTAAAAACTGTTTATTCTGTGCAATAGAGAACGAACAGGAATCAATGTTTCAATTCCTTATAGGTAGGCTAAAAACACAGCTTGAAGAAATAATCAACAACAATGATTTCTTGTTTCAATTCCTTATAGGTAGGCTAAAAACACAACACAAACATTTACTTATACATCAACAAAAACTGTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTTAGCGTCCCATCTTCTGTAATAATTAATTTTTGTTTCAATTCCTTATAGGTAGGCTAAAAACACACTGTAGCAGAATATAAAGATGCTAAAGACGAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACTCTGCTGTAGAAGGTGCAAGAGCATACGTGCCGTCGTTTCAATTCCTTATAGGTAGGCTAAAAACTTAATTATATAATTAAATCAGTCTCCTCCTTTATATAGTTTCAATTCCTTATAGGTAGGCTAAAAACCTCCTTTCTTTTTTCACAATAGACGTTGCAATAGCAGTTTCAATTCCTTATAGGTAGGCTAAAAACATCCTCAGATGCTGAATATTATTTCTATACAAAAGAGTTTCAATTCCTTATAGGTAGGCTAAAAACGGAGGCGACTTTTATCCCTCGGAGTATTATTTAGAGGGTTTCAATTCCTTATAGGTAGGCTAAAAACAAAAATCCTCTTTTATTTTTTAAATCTTAAATTGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGCTGAATCGTACAGGTTTAAATCCACAATTTACATTGTTTCAATTCCTTATAGGTAGGCTAAAAACGGTGCTTCACTCTTGCATGTATATTCTTTTTCACAGGTTTCAATTCCTTATAGGTAGGCTAAAAACAAATACACAAAACCGGACGGAACAACACATATATACATGTTTCAATTCCTTATAGGTAGGCTAAAAACAAGTACATTTATCTCTTCATCAGAGAGCTTGTTTTTTGTGTTTCAATTCCTTATAGGTAGGCTAAAAACAAAATAAAAAGCAGGATTTATTCCTGCTCTAAGAATAGTTTCAATTCCTTATAGGTAGGCTAAAAACGTTGAAGAAATTACAAAGCATGCTGAAAGGTACAGGTTTCAATTCCTTATAGGTAGGCTAAAAACGGTTCTAACTCTTTTATTTTCTTTTCCTGTTCTGCTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTAAAAGTATCATACAATTGCTAAAATCGCTAAAATGTTGTTTCAATTCCTTATAGGTAGGCTAAAAACATACACCGTTGATTACGCAGAATGCCTCGGGGTATCGTTTCAATTCCTTATAGGTAGGCTAAAAACAGCCCGGAAGGCAGCAAAATCAAGGTGGACAAGACAGTTTCAATTCCTTATAGGTAGGCTAAAAACAAATTTTCCCATCTCATCTTCAAATTTTTCATGGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACTTCATTTTTTCATCACCACCAAATTAATCGTTAGCAGTTTCAATTCCTTATAGGTAGGCTAAAAACGTAATACAAATTTTAGGGGTATTAGGTGCTGCATACCCGTTTCAATTCCTTATAGGTAGGCTAAAAACTTCCTTTAGGACAGTCAGGGAAAATATACATCAAGAAGTTTCAATTCCTTATAGGTAGGCTAAAAACAAACAGCTTTGTGTATACAATCACAAGAGACGAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACCAGCAAGTCACTTATACAATCTTCAATTGAATTGTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGAATAGCATTAGCTAAAGCTAGTTTGGATTCATCACTGTTTCAATTCCTTATAGGTAGGCTAAAAACAGTATTTTACTATGACCTTCCAAAGGAGGGGTAACTGTTTCAATTCCTTATAGGTAGGCTAAAAACATGTTACCCTTGCAATTTTTTGAACACCATTATGTTGTTTCAATTCCTTATAGGTAGGCTAAAAACCCCGATTTTCAATGAAACTTTTTGGGGGTGGCATCCAAGTTTCAATTCCTTATAGGTAGGCTAAAAACAATACGCTAAATTAACAACTTATAGACGTTTTGAAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTGAAATGGACGGAAGCGAAGCTAGTTCTGAAGCACTGTTTCAATTCCTTATAGGTAGGCTAAAAACACATTTACAGTGGAAGCTGAAAATGAAAAAGATGCAGGTTTCAATTCCTTATAGGTAGGCTAAAAACGCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGATGTTTCAATTCCTTATAGGTAGGCTAAAAACTAAATGCCATATGCTTTTGCATAAACAAAGTAGGAGGTTTCAATTCCTTATAGGTAGGCTAAAAACCTGTGCTAGTACTAAACAAAGCTTTTCATGTCTTGTTTCAATTCCTTATAGGTAGGCTAAAAACTTAAGCGTTGGTACAGTATATTCATACAATGTTATAAAGTTTCAATTTCTTATAGGTAGGCTAAAAACTGTATTACCTTCGAATCCTATTTTTACTGGTTTATCGTTTCAATTCCTTATAGGTAGGCTAAAAACAAAAAAACAATCTTGGAGAGAATTTCTCCAGGATTGGTTTCAATTCCTTATAGGTAGGCTAAAAACGCATTAAGTCGCTTATACAATCATCAATTGAACTATAGTTTCAATTCCTTATAGGTAGGCTAAAAACCATGGGGAGAAGTTTCAGCGCTTCTCGATAAAACTTGTTTCAATTCCTTATAGGTAGGCTAAAAACGGCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGATGTTTCAATTCCTTATAGGTAGGCTAAAAACAATAGTGATAAAATATAATCAACAAAGAAAAAAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTCCCAACTTTCACACTCCGCCAGCTAACACTTAGATGGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTAATTTGAAGTTTAGTCCTTCTTTAATTTGTTGTATGTTTCAATTCCTTATAGGTAGGCTAAAAACCTTTAAGTGCAATTTTTAATGTAATATCTTTTTCTTTGTTTCAATTCCTTATAGGTAGGCTAAAAACGTACCACGTGTTGCCGTTATAAAAACATCTTTATATCGTTTCAATTCCTTATAGGTAGGCTAAAAACTTATTTTTTTATCTTACATTACCAAAATTTTACAATAGGTTTCAATTCCTTATAGGTAGGCTAAAAACCAGTCGAATCAAAATACCACACATAAGCACAAGGAGTTTCAATTCCTTATAGGTAGGCTAAAAACCAGCATAGAAAATCCACAAGAGAGGGAACCAGAAAGTTTCAATTCCTTATAGGTAGGCTAAAAACAATCTACAGGTTCATCCTTTTCATAGTATTTTTTTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGGCCATACTGGACAGGTGGAGGGCAGAAGGTGGCATGTTTCAATTCCTTATAGGTAGGCTAAAAACGCAAACATTATGAACGCAAAAAACCCACAAAGTAAAGGTTTCAATTCCTTATAGGTAGGCTAAAAACGGTAAAATACCATTCTACATCGTTAATCTCTTTGCATGTTTCAATTCCTTATAGGTAGGCTAAAAACCTGTACTAATTATAATTGTATATACAATTCATAAAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTTATAGCATACGCAAGAGAAAATTATTTTATACTCGTTTCAATTCCTTATAGGTAGGCTAAAAACCCTGCATTTTCGCCAACTACCCATCTATCTATATTTGCGTTTCAATTCCTTATAGGTAGGCTAAAAACTTGTCGTCAGATAAAACTGACGACACACGACTCACGTTTCAATTCCTTATAGGTAGGCTAAAAACATGGCAAAAGCTTGACAGACAGACAGATAACACAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTATGATTACCATAGTTAAACACTACTTTTTTAGGACGTTTCAATTCCTTATAGGTAGGCTAAAAACTTAAATATATTGTGTTGTCTTTATCGTTAAAATCAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTAATCACAATTGAAAGAAGAAAATAAAAAAATAAAAATGTTTCAATTCCTTATAGGTAGGCTAAAAACTGTTTCATCCATAGTACGCGGGCAGCTCCACATGTGTTTCAATTCCTTATAGGTAGGCTAAAAACCACAACGCAGAGAGCTGTCCGATGTTTTCCAAATTTGTTTCAATTCCTTATAGGTAGGCTAAAAACTATATTCGTTTTTGATGTTCCATATCATAGTGTTTAGTTTCAATTCCTTATAGGTAGGCTAAAAACGAGGAAAGCCGGTAACCGCCATATAGTGCTGGCACTGGTTTCAATTCCTTATAGGTAGGCTAAAAACAGTTTTATATACGATGAGAGTAAATTAGTTTTATTGGTTTCAATTCCTTATAGGTAGGCTAAAAACTCTACAGGCAATGTAAAAGGCAGCAGTGAAGTTGGGTTTCAATTCCTTATAGGTAGGCTAAAAACAATAGAAACAGACAAAAAAGAACCCTCTCTAAAAGGTTTCAATTCCTTATAGGTAGGCTAAAAACTCGAAGGTGTTTTACGAAACTGGGTATCACAAGGGAGTTTCAATTCCTTATAGGTAGGCTAAAAACGTACTGTTAAGGCTTTGTGTTGTGTTGTGACGTAAGGGTTTCAATTCCTTATAGGTAGGCTAAAAACTTTTTACAAAAAGGAGAAGGATTTTTTTGAAACATGTTTCAATTCCTTATAGGTAGGCTAAAAACCTTGAAGGCATCATGCTTGCAATAGCAAGTGGTTGTTTCAATTCCTTATAGGTAGGCTAAAAACGAGGAAGCGTTAAAATGGGGTAAGCAAATTAGAAAGGGTTTCAATTCCTTATAGGTAGGCTAAAAACCAGAGAACACCAAACGGTTTTGAAATAGTTCACATGTTTCAATTCCTTATAGGTAGGCTAAAAACAACAAAATTGGATGATAATTAGACAGCTTAGTAGGTGTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015958|4|4|2673398-2679131|CRISPRCasFinder
CACTATTTTCAGGATAGGTAGGCTAAAAAC	GCAGTATTGCTCCAGGAATTCCCGTATCATTACCTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTCAGGATTTTACAATAGTAATACAATTTTAAGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATAATAGTAATAGAATATAATTAGCAAGATAAAAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTTCATCCGCCCATCACCCCAAGCCTGTCATTTTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTAGCAACCTTTGCCATACCATTTTCAAAGTCGATAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATCTGCTCCCCAAGCATAATAGGTCGCAGCTGTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCCGCCCATCGCACCATTTAGCACCGCTATCCCCG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGACGGCATAGTGCGTGTAGAAGGGCCTTCATACCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGCTTGTAGAATACCAGCCCAGTATCTAAACATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTTTATTCTGTGCAATAGAGAACGAACAGGAATCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACAGCTTGAAGAAATAATCAACAACAATGATTTCTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACAACACAAACATTTACTTATACATCAACAAAAACTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTAGCGTCCCATCTTCTGTAATAATTAATTTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACACTGTAGCAGAATATAAAGATGCTAAAGACGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGCTGTAGAAGGTGCAAGAGCATACGTGCCGTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAATTATATAATTAAATCAGTCTCCTCCTTTATATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCCTTTCTTTTTTCACAATAGACGTTGCAATAGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATCCTCAGATGCTGAATATTATTTCTATACAAAAGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAGGCGACTTTTATCCCTCGGAGTATTATTTAGAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAAATCCTCTTTTATTTTTTAAATCTTAAATTGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTGAATCGTACAGGTTTAAATCCACAATTTACATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTGCTTCACTCTTGCATGTATATTCTTTTTCACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAATACACAAAACCGGACGGAACAACACATATATACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAGTACATTTATCTCTTCATCAGAGAGCTTGTTTTTTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAATAAAAAGCAGGATTTATTCCTGCTCTAAGAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTGAAGAAATTACAAAGCATGCTGAAAGGTACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTTCTAACTCTTTTATTTTCTTTTCCTGTTCTGCTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAAAAGTATCATACAATTGCTAAAATCGCTAAAATGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATACACCGTTGATTACGCAGAATGCCTCGGGGTATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGCCCGGAAGGCAGCAAAATCAAGGTGGACAAGACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAATTTTCCCATCTCATCTTCAAATTTTTCATGGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCATTTTTTCATCACCACCAAATTAATCGTTAGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTAATACAAATTTTAGGGGTATTAGGTGCTGCATACCC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCCTTTAGGACAGTCAGGGAAAATATACATCAAGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAACAGCTTTGTGTATACAATCACAAGAGACGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGCAAGTCACTTATACAATCTTCAATTGAATTGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAATAGCATTAGCTAAAGCTAGTTTGGATTCATCACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTATTTTACTATGACCTTCCAAAGGAGGGGTAACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGTTACCCTTGCAATTTTTTGAACACCATTATGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCCGATTTTCAATGAAACTTTTTGGGGGTGGCATCCAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATACGCTAAATTAACAACTTATAGACGTTTTGAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGAAATGGACGGAAGCGAAGCTAGTTCTGAAGCACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACATTTACAGTGGAAGCTGAAAATGAAAAAGATGCAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAAATGCCATATGCTTTTGCATAAACAAAGTAGGAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGTGCTAGTACTAAACAAAGCTTTTCATGTCTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAAGCGTTGGTACAGTATATTCATACAATGTTATAAA
GTTTCAATTTCTTATAGGTAGGCTAAAAAC	TGTATTACCTTCGAATCCTATTTTTACTGGTTTATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAAAAACAATCTTGGAGAGAATTTCTCCAGGATTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCATTAAGTCGCTTATACAATCATCAATTGAACTATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATGGGGAGAAGTTTCAGCGCTTCTCGATAAAACTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAGTGATAAAATATAATCAACAAAGAAAAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCCCAACTTTCACACTCCGCCAGCTAACACTTAGATG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTAATTTGAAGTTTAGTCCTTCTTTAATTTGTTGTAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTTTAAGTGCAATTTTTAATGTAATATCTTTTTCTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTACCACGTGTTGCCGTTATAAAAACATCTTTATATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATTTTTTTATCTTACATTACCAAAATTTTACAATAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGTCGAATCAAAATACCACACATAAGCACAAGGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGCATAGAAAATCCACAAGAGAGGGAACCAGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATCTACAGGTTCATCCTTTTCATAGTATTTTTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCCATACTGGACAGGTGGAGGGCAGAAGGTGGCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAAACATTATGAACGCAAAAAACCCACAAAGTAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTAAAATACCATTCTACATCGTTAATCTCTTTGCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGTACTAATTATAATTGTATATACAATTCATAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAGCATACGCAAGAGAAAATTATTTTATACTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCTGCATTTTCGCCAACTACCCATCTATCTATATTTGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTCGTCAGATAAAACTGACGACACACGACTCAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGGCAAAAGCTTGACAGACAGACAGATAACACAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATGATTACCATAGTTAAACACTACTTTTTTAGGAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAAATATATTGTGTTGTCTTTATCGTTAAAATCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAATCACAATTGAAAGAAGAAAATAAAAAAATAAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTTTCATCCATAGTACGCGGGCAGCTCCACATGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CACAACGCAGAGAGCTGTCCGATGTTTTCCAAATTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATATTCGTTTTTGATGTTCCATATCATAGTGTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGAAAGCCGGTAACCGCCATATAGTGCTGGCACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTTTTATATACGATGAGAGTAAATTAGTTTTATTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTACAGGCAATGTAAAAGGCAGCAGTGAAGTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAGAAACAGACAAAAAAGAACCCTCTCTAAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGAAGGTGTTTTACGAAACTGGGTATCACAAGGGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTACTGTTAAGGCTTTGTGTTGTGTTGTGACGTAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTTACAAAAAGGAGAAGGATTTTTTTGAAACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTTGAAGGCATCATGCTTGCAATAGCAAGTGGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGAAGCGTTAAAATGGGGTAAGCAAATTAGAAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGAGAACACCAAACGGTTTTGAAATAGTTCACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AACAAAATTGGATGATAATTAGACAGCTTAGTAGGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015958|4|2|2673398-2679131|CRT
CACTATTTTCAGGATAGGTAGGCTAAAAAC	GCAGTATTGCTCCAGGAATTCCCGTATCATTACCTTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTCAGGATTTTACAATAGTAATACAATTTTAAGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATAATAGTAATAGAATATAATTAGCAAGATAAAAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTTCATCCGCCCATCACCCCAAGCCTGTCATTTTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTAGCAACCTTTGCCATACCATTTTCAAAGTCGATAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATCTGCTCCCCAAGCATAATAGGTCGCAGCTGTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCCGCCCATCGCACCATTTAGCACCGCTATCCCCG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGACGGCATAGTGCGTGTAGAAGGGCCTTCATACCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGCTTGTAGAATACCAGCCCAGTATCTAAACATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTTTATTCTGTGCAATAGAGAACGAACAGGAATCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACAGCTTGAAGAAATAATCAACAACAATGATTTCTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACAACACAAACATTTACTTATACATCAACAAAAACTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTAGCGTCCCATCTTCTGTAATAATTAATTTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACACTGTAGCAGAATATAAAGATGCTAAAGACGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGCTGTAGAAGGTGCAAGAGCATACGTGCCGTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAATTATATAATTAAATCAGTCTCCTCCTTTATATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCCTTTCTTTTTTCACAATAGACGTTGCAATAGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATCCTCAGATGCTGAATATTATTTCTATACAAAAGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAGGCGACTTTTATCCCTCGGAGTATTATTTAGAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAAATCCTCTTTTATTTTTTAAATCTTAAATTGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTGAATCGTACAGGTTTAAATCCACAATTTACATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTGCTTCACTCTTGCATGTATATTCTTTTTCACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAATACACAAAACCGGACGGAACAACACATATATACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAGTACATTTATCTCTTCATCAGAGAGCTTGTTTTTTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAATAAAAAGCAGGATTTATTCCTGCTCTAAGAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTGAAGAAATTACAAAGCATGCTGAAAGGTACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTTCTAACTCTTTTATTTTCTTTTCCTGTTCTGCTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAAAAGTATCATACAATTGCTAAAATCGCTAAAATGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATACACCGTTGATTACGCAGAATGCCTCGGGGTATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGCCCGGAAGGCAGCAAAATCAAGGTGGACAAGACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAATTTTCCCATCTCATCTTCAAATTTTTCATGGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCATTTTTTCATCACCACCAAATTAATCGTTAGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTAATACAAATTTTAGGGGTATTAGGTGCTGCATACCC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCCTTTAGGACAGTCAGGGAAAATATACATCAAGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAACAGCTTTGTGTATACAATCACAAGAGACGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGCAAGTCACTTATACAATCTTCAATTGAATTGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAATAGCATTAGCTAAAGCTAGTTTGGATTCATCACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTATTTTACTATGACCTTCCAAAGGAGGGGTAACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGTTACCCTTGCAATTTTTTGAACACCATTATGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCCGATTTTCAATGAAACTTTTTGGGGGTGGCATCCAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATACGCTAAATTAACAACTTATAGACGTTTTGAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGAAATGGACGGAAGCGAAGCTAGTTCTGAAGCACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACATTTACAGTGGAAGCTGAAAATGAAAAAGATGCAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAAATGCCATATGCTTTTGCATAAACAAAGTAGGAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGTGCTAGTACTAAACAAAGCTTTTCATGTCTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAAGCGTTGGTACAGTATATTCATACAATGTTATAAA
GTTTCAATTTCTTATAGGTAGGCTAAAAAC	TGTATTACCTTCGAATCCTATTTTTACTGGTTTATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAAAAACAATCTTGGAGAGAATTTCTCCAGGATTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCATTAAGTCGCTTATACAATCATCAATTGAACTATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATGGGGAGAAGTTTCAGCGCTTCTCGATAAAACTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAGTGATAAAATATAATCAACAAAGAAAAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCCCAACTTTCACACTCCGCCAGCTAACACTTAGATG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTAATTTGAAGTTTAGTCCTTCTTTAATTTGTTGTAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTTTAAGTGCAATTTTTAATGTAATATCTTTTTCTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTACCACGTGTTGCCGTTATAAAAACATCTTTATATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATTTTTTTATCTTACATTACCAAAATTTTACAATAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGTCGAATCAAAATACCACACATAAGCACAAGGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGCATAGAAAATCCACAAGAGAGGGAACCAGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATCTACAGGTTCATCCTTTTCATAGTATTTTTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCCATACTGGACAGGTGGAGGGCAGAAGGTGGCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAAACATTATGAACGCAAAAAACCCACAAAGTAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTAAAATACCATTCTACATCGTTAATCTCTTTGCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGTACTAATTATAATTGTATATACAATTCATAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAGCATACGCAAGAGAAAATTATTTTATACTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCTGCATTTTCGCCAACTACCCATCTATCTATATTTGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTCGTCAGATAAAACTGACGACACACGACTCAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGGCAAAAGCTTGACAGACAGACAGATAACACAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATGATTACCATAGTTAAACACTACTTTTTTAGGAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAAATATATTGTGTTGTCTTTATCGTTAAAATCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAATCACAATTGAAAGAAGAAAATAAAAAAATAAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTTTCATCCATAGTACGCGGGCAGCTCCACATGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CACAACGCAGAGAGCTGTCCGATGTTTTCCAAATTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATATTCGTTTTTGATGTTCCATATCATAGTGTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGAAAGCCGGTAACCGCCATATAGTGCTGGCACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTTTTATATACGATGAGAGTAAATTAGTTTTATTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTACAGGCAATGTAAAAGGCAGCAGTGAAGTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAGAAACAGACAAAAAAGAACCCTCTCTAAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGAAGGTGTTTTACGAAACTGGGTATCACAAGGGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTACTGTTAAGGCTTTGTGTTGTGTTGTGACGTAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTTACAAAAAGGAGAAGGATTTTTTTGAAACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTTGAAGGCATCATGCTTGCAATAGCAAGTGGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGAAGCGTTAAAATGGGGTAAGCAAATTAGAAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGAGAACACCAAACGGTTTTGAAATAGTTCACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AACAAAATTGGATGATAATTAGACAGCTTAGTAGGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC

>NC_015958|4|2|2673465-2679131|PILER-CR
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTCAGGATTTTACAATAGTAATACAATTTTAAGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATAATAGTAATAGAATATAATTAGCAAGATAAAAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTTCATCCGCCCATCACCCCAAGCCTGTCATTTTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTAGCAACCTTTGCCATACCATTTTCAAAGTCGATAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATCTGCTCCCCAAGCATAATAGGTCGCAGCTGTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCCGCCCATCGCACCATTTAGCACCGCTATCCCCG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGACGGCATAGTGCGTGTAGAAGGGCCTTCATACCT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTGCTTGTAGAATACCAGCCCAGTATCTAAACATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTTTATTCTGTGCAATAGAGAACGAACAGGAATCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACAGCTTGAAGAAATAATCAACAACAATGATTTCTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACAACACAAACATTTACTTATACATCAACAAAAACTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTAGCGTCCCATCTTCTGTAATAATTAATTTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACACTGTAGCAGAATATAAAGATGCTAAAGACGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTGCTGTAGAAGGTGCAAGAGCATACGTGCCGTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAATTATATAATTAAATCAGTCTCCTCCTTTATATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTCCTTTCTTTTTTCACAATAGACGTTGCAATAGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATCCTCAGATGCTGAATATTATTTCTATACAAAAGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGAGGCGACTTTTATCCCTCGGAGTATTATTTAGAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAAATCCTCTTTTATTTTTTAAATCTTAAATTGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCTGAATCGTACAGGTTTAAATCCACAATTTACATT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTGCTTCACTCTTGCATGTATATTCTTTTTCACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAATACACAAAACCGGACGGAACAACACATATATACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAGTACATTTATCTCTTCATCAGAGAGCTTGTTTTTTGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAATAAAAAGCAGGATTTATTCCTGCTCTAAGAATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTTGAAGAAATTACAAAGCATGCTGAAAGGTACAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTTCTAACTCTTTTATTTTCTTTTCCTGTTCTGCTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAAAAGTATCATACAATTGCTAAAATCGCTAAAATGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATACACCGTTGATTACGCAGAATGCCTCGGGGTATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGCCCGGAAGGCAGCAAAATCAAGGTGGACAAGACA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAATTTTCCCATCTCATCTTCAAATTTTTCATGGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCATTTTTTCATCACCACCAAATTAATCGTTAGCA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTAATACAAATTTTAGGGGTATTAGGTGCTGCATACCC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTCCTTTAGGACAGTCAGGGAAAATATACATCAAGAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAACAGCTTTGTGTATACAATCACAAGAGACGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGCAAGTCACTTATACAATCTTCAATTGAATTGTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAATAGCATTAGCTAAAGCTAGTTTGGATTCATCACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTATTTTACTATGACCTTCCAAAGGAGGGGTAACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGTTACCCTTGCAATTTTTTGAACACCATTATGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCCGATTTTCAATGAAACTTTTTGGGGGTGGCATCCAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATACGCTAAATTAACAACTTATAGACGTTTTGAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGAAATGGACGGAAGCGAAGCTAGTTCTGAAGCACT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ACATTTACAGTGGAAGCTGAAAATGAAAAAGATGCAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAAATGCCATATGCTTTTGCATAAACAAAGTAGGAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGTGCTAGTACTAAACAAAGCTTTTCATGTCTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAAGCGTTGGTACAGTATATTCATACAATGTTATAAA
GTTTCAATTTCTTATAGGTAGGCTAAAAAC	TGTATTACCTTCGAATCCTATTTTTACTGGTTTATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AAAAAAACAATCTTGGAGAGAATTTCTCCAGGATTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCATTAAGTCGCTTATACAATCATCAATTGAACTATA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CATGGGGAGAAGTTTCAGCGCTTCTCGATAAAACTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCGCTGCCTGTTTCTGCACCTGTGGCGCTGGTAGAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAGTGATAAAATATAATCAACAAAGAAAAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCCCAACTTTCACACTCCGCCAGCTAACACTTAGATG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTAATTTGAAGTTTAGTCCTTCTTTAATTTGTTGTAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTTTAAGTGCAATTTTTAATGTAATATCTTTTTCTTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTACCACGTGTTGCCGTTATAAAAACATCTTTATATC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATTTTTTTATCTTACATTACCAAAATTTTACAATAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGTCGAATCAAAATACCACACATAAGCACAAGGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGCATAGAAAATCCACAAGAGAGGGAACCAGAAA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATCTACAGGTTCATCCTTTTCATAGTATTTTTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGCCATACTGGACAGGTGGAGGGCAGAAGGTGGCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GCAAACATTATGAACGCAAAAAACCCACAAAGTAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GGTAAAATACCATTCTACATCGTTAATCTCTTTGCAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTGTACTAATTATAATTGTATATACAATTCATAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTATAGCATACGCAAGAGAAAATTATTTTATACTC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CCTGCATTTTCGCCAACTACCCATCTATCTATATTTGC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTGTCGTCAGATAAAACTGACGACACACGACTCAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	ATGGCAAAAGCTTGACAGACAGACAGATAACACAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATGATTACCATAGTTAAACACTACTTTTTTAGGAC
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTAAATATATTGTGTTGTCTTTATCGTTAAAATCAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TAATCACAATTGAAAGAAGAAAATAAAAAAATAAAAAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TGTTTCATCCATAGTACGCGGGCAGCTCCACATGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CACAACGCAGAGAGCTGTCCGATGTTTTCCAAATTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TATATTCGTTTTTGATGTTCCATATCATAGTGTTTA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGAAAGCCGGTAACCGCCATATAGTGCTGGCACTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AGTTTTATATACGATGAGAGTAAATTAGTTTTATTG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCTACAGGCAATGTAAAAGGCAGCAGTGAAGTTGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AATAGAAACAGACAAAAAAGAACCCTCTCTAAAAG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TCGAAGGTGTTTTACGAAACTGGGTATCACAAGGGA
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GTACTGTTAAGGCTTTGTGTTGTGTTGTGACGTAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	TTTTTACAAAAAGGAGAAGGATTTTTTTGAAACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CTTGAAGGCATCATGCTTGCAATAGCAAGTGGTT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	GAGGAAGCGTTAAAATGGGGTAAGCAAATTAGAAAGG
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	CAGAGAACACCAAACGGTTTTGAAATAGTTCACAT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC	AACAAAATTGGATGATAATTAGACAGCTTAGTAGGT
GTTTCAATTCCTTATAGGTAGGCTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015958.1\|WP_041589266.1\|2685822_2686698_+\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_015958.1\|WP_009052108.1\|2679311_2681648_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015958.1\|WP_014063720.1\|2659583_2661002_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_015958.1\|WP_014063731.1\|2686946_2687702_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_015958.1\|WP_014062373.1\|2667451_2668033_-\|hypothetical-protein	unknown	unknown	unknown
NC_015958.1\|WP_014063728.1\|2682387_2683269_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_015958.1\|WP_014063725.1\|2670202_2670700_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015958.1\|WP_014063732.1\|2687954_2689226_+\|copper-amine-oxidase	unknown	unknown	gnl\|CDD\|377924
NC_015958.1\|WP_014063721.1\|2662078_2664004_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274912
NC_015958.1\|WP_014063727.1\|2672091_2673312_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_015958.1\|WP_014063726.1\|2671028_2671757_-\|peptidase-E	unknown	unknown	gnl\|CDD\|153240
NC_015958.1\|WP_014063733.1\|2689253_2689667_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NC_015958.1\|WP_014063723.1\|2666001_2667315_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_015958.1\|WP_014063734.1\|2689663_2690893_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NC_015958.1\|WP_009052107.1\|2681662_2682373_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|131641
NC_015958.1\|WP_041589265.1\|2685421_2685610_+\|hypothetical-protein	unknown	unknown	unknown
NC_015958.1\|WP_003871085.1\|2661038_2661818_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NC_015958.1\|WP_014063724.1\|2669213_2670206_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_015958.1\|WP_014063735.1\|2690889_2691939_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|273908
NC_015958.1\|WP_003871087.1\|2668933_2669197_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NC_015958.1\|WP_041589266.1\|2685822_2686698_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.24122e-08
NC_015958.1\|WP_009052108.1\|2679311_2681648_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.50996e-47
NC_015958.1\|WP_014063720.1\|2659583_2661002_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.19775e-134
NC_015958.1\|WP_014063731.1\|2686946_2687702_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.79513e-41
NC_015958.1\|WP_014063728.1\|2682387_2683269_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.80934e-73
NC_015958.1\|WP_014063725.1\|2670202_2670700_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.63289e-65
NC_015958.1\|WP_014063732.1\|2687954_2689226_+\|copper-amine-oxidase	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	8.0875e-34
NC_015958.1\|WP_009052107.1\|2681662_2682373_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	5.77817e-26
NC_015958.1\|WP_014063727.1\|2672091_2673312_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	7.86451e-41
NC_015958.1\|WP_014063726.1\|2671028_2671757_-\|peptidase-E	gnl\|CDD\|153240	cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.	5.55068e-66
NC_015958.1\|WP_014063723.1\|2666001_2667315_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.87505e-22
NC_015958.1\|WP_014063734.1\|2689663_2690893_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_015958.1\|WP_014063733.1\|2689253_2689667_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.47854e-74
NC_015958.1\|WP_014063721.1\|2662078_2664004_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	2.05989e-152
NC_015958.1\|WP_003871085.1\|2661038_2661818_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.17177e-57
NC_015958.1\|WP_014063724.1\|2669213_2670206_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.89748e-179
NC_015958.1\|WP_014063735.1\|2690889_2691939_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.06057e-75
NC_015958.1\|WP_003871087.1\|2668933_2669197_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.0037e-34

>NC_015958.1|WP_014063727.1|2672091_2673312_+|IS110-family-transposase
MDLVYSHVCGLDVHKKNVVACIITPEGKEISTFSTMTDDLIALKEFIKAKGCSVVAMESTGSYWKPIYNLLELESIKILLVNAKHIKNVPGRKTDVKDAEWIASLLQHGLLQGSFVPDREQRELRELVRYRKSLIEEKSRELNRIQKVLEGANIKLSSVVSDINGASSRSILEAIINGEDNPETLAELSQGKLKNKMDELKGALKGLINHHQRMLLEIQLRHIDYLDKEIAKLDEEIKNRMLPFEKDLALLDTIPGVGRRTAEQIIAEIGTNMEQFPSAAHLCSWAGLCPGHNESAGKQKSARTRKGNQKLRSSLIEAARAASRAKDTYLSSQYHRIAARRGANRAAVAVAHSILIIVYHILKRKQPYIELGPTYYEEKKRNMIIRQSVKKLESLGLKVTVESAVS
>NC_015958.1|WP_014063726.1|2671028_2671757_-|peptidase-E
MKKVVAIGGGEISKFETFKIDEEIVKLTDKAKPKALFVPTASGEPEAYCDNFDFVYGKMLGCETDILFLIKDDPDSSQIEKKISWADLIYVGGGNTKRMMEIWRSKGVDKTLIDAYQRGTVLSGLSAGAICWFKYGFSDSQRFENQENWHYTKVEGLGLFDAILCPHLNEENRRELFEKFMIDFEGVGIGLENGCAIEIVDDTFKIINSFENAHAYVFRRSENKLFVDEIRHRDYIPFNLLI
>NC_015958.1|WP_014063725.1|2670202_2670700_-|CRISPR-associated-protein-Cas4
MEFEVTGALMQSYTICKRQVWLMAHQIVPDQEHPYIEIGRLIDENSYQRDRKKIHFENVVLDLVRMEKDNILIGEVKKSSKAEDSAKMQLLFYLYKLKQSGITAKGQLFFPEERKREVIELTPEFEKEVIKAIEEIKDIVYKEKPPAFIKIPYCKNCGYKEFCMS
>NC_015958.1|WP_014063724.1|2669213_2670206_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTIYIFSDGELKRKDNTLFFEGENGRKFIPVENTSEIMVFGEVSLNKRLLEFLTQSEIILHFFNHYGYYVGSYYPREHLNSGYMILRQAEHYNDGSKRLYLAQKFVEGAYKNIRQVLKYYSNRGKDLEDVIYPIEKLGESVDSTSTINELMAIEGNIREYYYKAFDEIIQNPDFKFDFRSKRPPQNFLNTLISFGNSLMYTTTLSEIYKTHLDPRIGFLHATNFRRFSLNLDVSEIFKPIIIDRTIFTLLSKKMVTKEDFEEDAEGLLLKEKGKKVFVQEFEDKLATTIKHRNLSNNVSYRRLIRLELYKLEKHLIEEEQYKPFIAQW
>NC_015958.1|WP_003871087.1|2668933_2669197_-|CRISPR-associated-endonuclease-Cas2
MFLILVYDVNEKRVNKVLKTCRKYLHWVQNSVLEGEISEANLKKLKIELSRIIDKDEDSVIFYILRTTKYSEREILGLRKGGEDIII
>NC_015958.1|WP_014062373.1|2667451_2668033_-|hypothetical-protein
MQIIFHVDNIEEYLQRSKDYNFPDPPDRCPHSDCKCRVKLKKHGFYYRYYLDGPNCVKIAIRRYICPVCKRTLSYLPDFCIPHFQYSFNMIVKSLKETLTREKTLSSFINDLKRNFPTILFSRQHIYFYTKRIMNNLSFIIYGLRQIDPYIKLFEVSSQRERAREILDIINIVPLFSQRFYAHCQKSFLAPLT
>NC_015958.1|WP_014063723.1|2666001_2667315_-|IS481-family-transposase
MLDEKAREAIALKRFSLISPVLNGQVKNQKEYFDALSDKPIEIPYLGMRRYTPKTLRGWLYQYLRGGIEALKPGYRSDRGKYRKIDFELSERIKQKKLEHPEMPNKLLYETLIGEGIISPNKVSLSTFYRFLKNIPVKSLDKEKEGKTKRFSHEYINELWQTDVMYGPYIKEGKTKRQTYLIAYIDDASRLCTYARFYYTQNFLALRDSFKEAVLRRGIPKMLYTDNGKIYRSTQLEYICASLGTSLIHAEPFSPHSKGKIERFFHTVRMRFLSTIDPTSVKSIDELNMMFFKWLEEDYNRKEHSSIGMSPLDFFMSQISRINMCNIDMLNECFLIRVNRKVNKDATLKVENILYETEEKFKNMHLEVRYDPEWLKDNTPLLLYYEGKKVGEAYKVNFHENAKIPAAYIKGKNDVNENEEISDFTKHKVISFNDIID
>NC_015958.1|WP_014063721.1|2662078_2664004_-|FAD-dependent-oxidoreductase
MELTKPIKIGNLNLKNRVVMAPVKTGYATPEGQVTEELIQYYVNRAKGGVGLIVLESAYIDPSGKEIPRQLGIYDDAMVEGLRRLITPLQEAGSKVAVYINHAGRIANPMVTKLPLIAPSPIACPTIGVEPQGIPHEDIKKWQNTYVRAAVRAYEAGADALEIQFGHGYLIHQFLSPYTNKREDEYGGSFENRIRFGMEILAEIKKEIGVDFPIIVRISADELVPGGWTLEDAIRLAKALEDKGVAAIDVSLGSSCESGAITLQTLGTQKGLAWEFASKIKEQVNIPVIAVGRINTPELAEEILVSGKADLVALGRPLVADPLFIEKATSGRSKEIRRCAACHQGCLDELRAGRRFGCNFNPSVGKEEEIEIPKAPQPGKKVFIIGAGLAGLEAAYTVAARGHKVYIYEEKGEIGGQVLPGSVPPHKEELKGIVEYYKEVLPKLGVTLNLNHKVVAEEVAKWEADEVVLATGGQPIVPPIPGLKEYGFLTAVEVLRGEKQPGNKVAIIGGGLIGMETADYLSEQGKEVMVIELLEEVARDMGVFEKNLIMKRLKERGVEIYVKTRLKEVGKVLLVETPEGEKELPLPDTIVLAVGLKPDPSLYEEVSKVLPQEKLHVIGDAKEVRKIVHAISEGRNLGLSI
>NC_015958.1|WP_003871085.1|2661038_2661818_-|MBL-fold-metallo-hydrolase
MKFCSLRSGSSGNAIYINHKDVHILVDAGLSGRTIEKALLNIGINPKSLSAILITHEHKDHIIGAGVLSRRYNIPIYANKATWEVMEKDIKEISEKNKLYFTTGEEFEIGDVKIMPFKKSHDAVEPVGFSFKCGDKKISIATDLGYMTRGVANHLIGSDIVLLEANHDIEMLINGSYPWPLKKRILSNLGHLSNDAAADTLMKLFKMKAIGIAFLGHLSQNNNRPELAFATVTNVLKKSGVKFEVRMALRNIESDLVEI
>NC_015958.1|WP_014063720.1|2659583_2661002_+|amino-acid-permease
MTNSNGLFRKKTLEMILADTESEQYKLKKSLTAIDLVALGIGAIIGTGIFVITGVAAAEHAGPAIILSFVLAGLACAFAAISYAEFASMFPIAGSTYSYSYVALGEIFAWIIGWDLILEYVFALPAIALGWSGYFTNLLASIGINIPDWAAHSAWQGPGGLINLPAIGILLLVAALVYIGTRESATVNNIAVAFKVFVVLFFIVVAVWHVKPVNWHPFMPYGWKGIFTGAAIVFFAYIGFDAVSTAAEETKNPARDLPIGILGSLGISTILYIAVAAILTGVVSYARLNDPAPVAKALNIIGLNWARGLVSIGALTGITTVLLVMTYGSTRIIFAMSRDGLLPPAFSKLHPKFRTPTLAIYLIAIATSLVAGFLPIGIIAELVNIGTMLAFVLVSISVIVLRYTQPDLPRKFRAPGVPWTPLLAIIFVGALMASLPWETWVRLIVWLIIGLIIYFSYGRHHSKLAQQKQQLK
>NC_015958.1|WP_009052108.1|2679311_2681648_-|CRISPR-associated-helicase/endonuclease-Cas3
MKYYSHYDEEMKYEKLLYEHLIEVKNLSINQIPEEYKKAYEIIALCHDFGKYTSYFQEYLKTKKKTSLSNHSFISAVFGGYVAIQYYGEENILPLIVYNTILHHHGNLESFSVNLPSKFKDVSRKDFPLNVSEKIDISYKQLKDMRQNLSFIIPDFERLGLAKEFKQFVEEENVIKDTLAILKKLEALSIRRLKSDENYFIHQMLYSALISADKISASNTYLPEELYVDYKTLNKIRENQFEISEKDIDKIRTEIFKVVIENLEKNYNKSKIFSITAPTGTGKTVTGFFAALKLKELLGGNRKIIYSLPFTSIIEQNYGVLFELLEKLDKFKGNSSRYIIKHHNLAMIEYESEYRDYKKTEAELLIENWQSGIIITTFVQLLETLVGARNRMLKKFNALKGSIIILDEIQAINIKYFQLVDYILNKASEYLDLRIIIMTATKPMILNDAVELLDNNEKYFSIFKRTRLMPQMEKLTIESFIEKFKENLEDKSYLIVCNTIMQSLEIYKRLVELGLNREIFYLSTNILPLHRRERINKIKEKLEKEEKIILVSTQVVEAGVDFDFDVVIRDLGPIDSIIQSAGRCNRNGKKEIGDVYVYKMIDEEENLFGKYVYGNTLMNISENILKRYDTIMEEKYFQLINEYFSMVMQNKSSQVSREFIKSIENLDFSEGEYAIDSFSLIENNPGYFEAFFIYDDVAEDIFKKYLKLSNIKDFNARREAYLEIQKNIKDYILSLPKKYINNFQLDKGIPYLPKEGIKDIYDFKTGFKRDIDDKYMIF
>NC_015958.1|WP_009052107.1|2681662_2682373_-|type-I-B-CRISPR-associated-protein-Cas5
MVIFDLWGKFAHFRKFYTNSSSLTYSVPPRTTVEGMIAALLGYERDTYYEKLNAENLYVAVRKMSKTKKIMQSVNYIKATTLGELHFPKQHTQIPFELLISDSKIRYRFYIIHKDENIFREIKERLFKKAPVFPLYFGSAPFSCYIDYVEEVTWDWATSEDFQDIYSVMPSDKIKEIDIKNMKGYLLKERMPRDFGIDRTIKEVTTYVYEDVGHPIRVKVNGEFIKLSNGENIVFM
>NC_015958.1|WP_014063728.1|2682387_2683269_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MSVNNNEILYIYDAKLTNPNGDPDEENRPRMDYEREINLVSDLRLKRYIRDYLMLKGYDIFVRLVDDKPVTADKRVKDLEDSSNEWILENWIDVRMFGATMTVQKDTKTFIGPIQFNWGYSLNKVELLEASITSHFSSSETFAQGTIGKDFRVKYSLIAFSGVVSGHRAEKTKLKEDDLYLLDEALKHAIPNLVTRSKIGQYPRIYMRVEYVDKETILGDFRDYIELKTTTDSIRDINECSLEMVKLVNLLNENKNKIKNVYYFVDERLELNINGEKVTFEEAFKELPLKKVD
>NC_015958.1|WP_041589265.1|2685421_2685610_+|hypothetical-protein
MYQLQLLLNIPELFTSLSKIDFYSSMSKNLDLSSIPEFPSSSPGRKGYSHHAMFRAFIVIKL
>NC_015958.1|WP_041589266.1|2685822_2686698_+|transposase
MDSTPIKANTKLNNPKSFSKNKFSKDNQPKSDKDCKLGVYSASNDSSNKRYKFYWGYKNHIIVDAISGLPIAETTTPADVPDFEVALSLLEKTNKWFNLKYVNFIADKGYDVKRVYNFVRDTLHGHCFIPLNKRNSKSPPLTDDGYMVCEAGIKMLKDGKQYFDGFIKQKFVCKFCNSKDDSACPIKHPKYFNGKKHRGCTKYAIISSDYRSSINRDSLYFKAVYRLRVESERYNSRFKALDFEKAYVRNINSVSNLNTFGHITLLTVAIVAIKLGKFDEFKSLVALMQSA
>NC_015958.1|WP_014063731.1|2686946_2687702_-|CRISPR-associated-endoribonuclease-Cas6
MRITLEFVGEKNLVLPIHYNYVVQGFLYDLMGDSDFAAFLHDEGFQYEKRKFKLFTFSRIEGEFKILTDSKGQKKISIKPPFKFTVASPLDEFIFDISKNALKKEYCHFNGQKFILNSLNIDNPPVFKNKARIKFISPVVMYTTLKDGDIKYTYYYSPWDEKFSPLLLNNLLKKYELVYKIKAKDPYFKLYPLSEKEDRRYSKMIKYKNVYVKGWMGIYDVESSPELLELAYYTGLGAKNSQGFGCFEIIG
>NC_015958.1|WP_014063732.1|2687954_2689226_+|copper-amine-oxidase
METFKKKLVLSFISTFLIVTIFNLQVANAQEKQEITVLLDGYPVTFDVAPVLKDGTTLVPFRAIAEALNISVNWDNHTQTVIATDNKTNVKLQIGNKTAIKDNVPITLRVSPQMINQRTLIPLRFFSEAFNCDVDWNENTYTVKITSPPKEMFVTGFYALGDSQTSSWTNLFGKSYPEYTSGNTGYFSSIAFGWYSLDSNGNLLTKSRTGWQRPDGWEKVLDVISQFELKSEMVIHVTDGDNTVSNLLSSKEAIEKAISSIAEEAKTYDSVNLDFEGLGLNESKEDLVQTQQKFTEFVKLLRNRLDASKSITLTLHAPNSVYKGYDYKTLGEIADKIIVMAYDYGTKPEPEELVIQAIEQATKNVPKEKLLLGISIPNETEESFAVKIGLAKRFGLDGIAIWRLGLVKDEMWNVLKNSITPRR
>NC_015958.1|WP_014063733.1|2689253_2689667_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MSDLNQLYSEVIMEHYENSPHRRELKDATHKERGHNPLCGDDITLYLKMNGDIIEDASFTGHGCAISQASTSMMIDLIKGKDKKEALRLVQEFIDMIHKKDINLDELGDAQVLQGVSDFPARVKCALLAWKTLQEIL
>NC_015958.1|WP_014063734.1|2689663_2690893_-|cysteine-desulfurase
MKNIDIERIKKDFPILSVKPHGKRLVYLDNAATTQKPIEAIKAMDKYYEELNANVYRSPHYLSALSTQAYEEARERVKKFINAKKEESIVFTRNTTESINFIAYTWGMKHINEGDEILLTIAEHHSNILPWQMVAEAKGAKLKYVYLDENFRLSMKDFKEKMSDKVKLVAVQHMSNVLGIINPVEEITHIAHKYGAKVLIDGAQSVPHMPADVQKIDCDFFAFSGHKMLGPMGIGVLYIKEDLLKEVPPFLRGGEMIDEVYEDHSTFAPSPLKFEAGTPNIEGAYVLISAIDYIEKIGLTNIYKHEGELLEYGLQKMKELDFVKLYGPKDAKERGGIISFNVEGVHPHDVATILDEEGVAVRSGHHCCQPLMRYLGVPATVRASFYLYNDFEDIDALVEGLKKVRKWFK
>NC_015958.1|WP_014063735.1|2690889_2691939_-|Fe-S-cluster-assembly-protein-SufD
MWKRVSIEEIQQPSYKEYTSAAIKDLSHDTVKIKETKKLAGLPTEILALRDKAFGIEGKFINMVKDFYNAGFHIEISQNSNVEKPIVIDYITNEQNDTLIDYNIIEAEANSQVTIVFDYNSGTKGFHNGITQVIAKEGSTVNIVKIQRLGDEFNDFDNNLVIVGKNAMVNWSNVVIGSKVSAFDVAVYLDEVGGTFTSKSIFLGVDSQKYDMAYKVYHQAPKTTSSVDLKGALKGSAKATFIGNIDIKKGAKKAKAEENETVLLLDKTVKSVAIPALYCGEDDVQANHSASAGQIDEDKLYYVMSRGFSLEEARLLMVQAILNPVIDLIPYDPVREIIIKGHIGRRIIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015958_4	4.56\|2677082\|37\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	2677082-2677118	37	NZ_CP022280	Escherichia coli strain STEC299 plasmid pSTEC299_1, complete sequence	174907-174943	7	0.811
NC_015958_3	3.8\|1503518\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1503518-1503553	36	MG592671	Vibrio phage 2.275.O._10N.286.54.E11, partial genome	158014-158049	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	MT438761	Listeria virus P61, complete genome	18502-18537	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	NC_025440	Listeria phage WIL-1, complete genome	23961-23996	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	DQ003638	Listeria phage A511, complete genome	8098-8133	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	KJ668715	Listeria phage LMTA-34, partial genome	110315-110350	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	131739-131774	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	8055-8090	9	0.75
NC_015958_3	3.30\|1504971\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1504971-1505006	36	KT319598	UNVERIFIED: Listeria phage WIL-2 genomic sequence	23683-23718	9	0.75
NC_015958_4	4.72\|2678144\|38\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	2678144-2678181	38	MN693581	Marine virus AFVG_25M104, complete genome	30842-30879	9	0.763
NC_015958_4	4.82\|2678805\|35\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	2678805-2678839	35	MN013189	Microcystis phage Mic1, complete genome	34198-34232	10	0.714
NC_015958_4	4.56\|2677082\|37\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	2677082-2677118	37	MH884508	Bacillus phage vB_BcoS-136, complete genome	84490-84526	11	0.703
NC_015958_3	3.7\|1503452\|36\|NC_015958\|CRISPRCasFinder,CRT,PILER-CR	1503452-1503487	36	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	174916-174951	12	0.667

1. spacer 4.56|2677082|37|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022280 (Escherichia coli strain STEC299 plasmid pSTEC299_1, complete sequence) position: , mismatch: 7, identity: 0.811

ctttaagtgc---aatttttaatgtaatatctttttcttt	CRISPR spacer
---taggtgtaagaatttttagtgtaatatctttatcttt	Protospacer
   **.***.   ********.************ *****

2. spacer 3.8|1503518|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to MG592671 (Vibrio phage 2.275.O._10N.286.54.E11, partial genome) position: , mismatch: 9, identity: 0.75

acattgaaattacagataaaccaagcattatccctt	CRISPR spacer
gcattgaacttacagataaaccaaacatattatttc	Protospacer
.******* ***************.***  * ..*.

3. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaacccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

4. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaacccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

5. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaacccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

6. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaatccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

7. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaacccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

8. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaacccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

9. spacer 3.30|1504971|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to KT319598 (UNVERIFIED: Listeria phage WIL-2 genomic sequence) position: , mismatch: 9, identity: 0.75

caaaaatatatttaaagccattaaaaagcttgcaga	CRISPR spacer
taaaaatttatttaaacccattaaaaatttatttga	Protospacer
.****** ******** ********** .*  . **

10. spacer 4.72|2678144|38|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to MN693581 (Marine virus AFVG_25M104, complete genome) position: , mismatch: 9, identity: 0.763

taatcacaattgaaagaagaaaataaaaaaataaaaat	CRISPR spacer
tataaaattttgaatgaagaaaataaaaaattaaaaaa	Protospacer
**   *   ***** *************** ******

11. spacer 4.82|2678805|35|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to MN013189 (Microcystis phage Mic1, complete genome) position: , mismatch: 10, identity: 0.714

tttttacaaaaaggagaaggatttttttgaaacat	CRISPR spacer
gttttacaaaaaggagcagtatttttttcctgtcg	Protospacer
 *************** ** ********   ..

12. spacer 4.56|2677082|37|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 11, identity: 0.703

ctttaagtgcaatttttaatgtaatatctttttcttt	CRISPR spacer
acgataccgatatttttaatgtaaaatgtttttcttt	Protospacer
 .   * .*  ************* ** *********

13. spacer 3.7|1503452|36|NC_015958|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 12, identity: 0.667

gcaaaaatatcgtgacaaattctacaaagttgcatt	CRISPR spacer
cgaaaaacatcgtgacaacttctacaaaccaattaa	Protospacer
  *****.********** ********* . ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22712 : 31628

Staphylococcus_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014061991.1\|22712_24377_+	biosynthetic-type acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	4.0e-68	31.4
WP_014061992.1\|24573_25656_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.1e-55	38.0
WP_014061993.1\|25666_26290_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.3e-35	42.5
WP_014061994.1\|26327_27518_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.0e-115	52.8
WP_003869973.1\|27591_28056_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.7e-41	56.3
WP_003869972.1\|28074_29139_-	sporulation integral membrane protein YtvI	NA	NA	NA	NA
WP_003869971.1\|29242_29413_-	hypothetical protein	NA	NA	NA	NA
WP_003869970.1\|29550_30081_+	signal peptidase I	NA	NA	NA	NA
WP_014061995.1\|30356_31628_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-94	48.8

DBSCAN-SWA_2

691877 : 700671

Moraxella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003870509.1\|691877_693260_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	9.0e-58	33.4
WP_014062436.1\|693334_693799_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-24	46.3
WP_014062437.1\|693818_694526_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_052877850.1\|694565_694775_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014062438.1\|694777_695452_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014062439.1\|695454_697656_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-167	43.8
WP_014062440.1\|697634_699032_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	9.7e-60	33.5
WP_014062441.1\|699049_700060_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.9e-75	46.1
WP_014062442.1\|700056_700671_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.6e-20	35.3

DBSCAN-SWA_3

768497 : 825650

Enterobacteria_phage(17.65%)

transposase,protease,integrase

attL 767727:767744|attR 809027:809044

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
767727:767744	attL	NA	NA	NA	NA
WP_014062483.1\|768497_769901_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_014062484.1\|770350_771649_+	trigger factor	NA	NA	NA	NA
WP_014062485.1\|771654_772242_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.1e-52	52.6
WP_014062486.1\|772263_773538_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-149	63.7
WP_014062487.1\|773637_775974_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.5e-187	46.7
WP_014062488.1\|775963_776548_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_004397406.1\|776719_777082_+	DUF2294 domain-containing protein	NA	NA	NA	NA
WP_014062489.1\|777195_777849_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_003870589.1\|777917_778139_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_014062490.1\|778158_778668_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_003870591.1\|778655_779189_+	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_014062491.1\|779214_780735_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_014062492.1\|780734_781616_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_014062493.1\|781630_783016_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_004397392.1\|783026_783440_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_014062494.1\|783489_784353_-	DMT family transporter	NA	NA	NA	NA
WP_014062495.1\|784384_786016_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.6e-98	39.5
WP_156786931.1\|786045_786357_-	hypothetical protein	NA	NA	NA	NA
WP_014062496.1\|786808_787621_-	ABC transporter permease	NA	NA	NA	NA
WP_014062497.1\|787613_788360_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-34	40.3
WP_014062498.1\|788460_789456_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014062499.1\|789652_792139_+	hypothetical protein	NA	NA	NA	NA
WP_014062500.1\|792367_792775_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	2.2e-52	69.9
WP_014062503.1\|796185_797874_+	AAA family ATPase	NA	NA	NA	NA
WP_014062504.1\|798068_798869_-	AAA family ATPase	NA	NA	NA	NA
WP_014062505.1\|798886_800200_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_014062373.1\|800336_800918_-	hypothetical protein	NA	NA	NA	NA
WP_014062506.1\|801298_801622_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_014062507.1\|801614_801848_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_014062508.1\|802110_803814_+	AAA family ATPase	NA	NA	NA	NA
WP_014062509.1\|804154_805207_+	hypothetical protein	S5VY82	Leptospira_phage	2.6e-09	26.1
WP_041589314.1\|805367_806735_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.3e-80	38.9
WP_014062512.1\|807273_807894_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_014062513.1\|807935_809162_+	glycosyltransferase	NA	NA	NA	NA
809027:809044	attR	NA	NA	NA	NA
WP_156786932.1\|809427_809577_+	hypothetical protein	NA	NA	NA	NA
WP_052877852.1\|809696_809891_+	hypothetical protein	NA	NA	NA	NA
WP_014062514.1\|810626_811655_+	EpsG family protein	NA	NA	NA	NA
WP_014062515.1\|811677_812562_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014062516.1\|812548_813391_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_083820890.1\|813494_813749_+	hypothetical protein	H9NC64	Sphingomonas_phage	2.0e-11	56.8
WP_014062517.1\|813994_815176_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	9.1e-35	27.3
WP_014062518.1\|815441_816725_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041589196.1\|817139_817394_+	glycosyltransferase	NA	NA	NA	NA
WP_014062519.1\|818842_819778_+	SDR family oxidoreductase	E3T4Y8	Cafeteria_roenbergensis_virus	1.1e-43	36.5
WP_014062520.1\|819820_820873_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-78	46.8
WP_014062521.1\|820886_821804_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.3e-100	62.2
WP_014062522.1\|821823_822720_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-36	37.4
WP_014062523.1\|822721_823279_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.8e-49	54.5
WP_014062524.1\|823315_824389_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	2.3e-37	32.1
WP_014062525.1\|824578_825226_+	hypothetical protein	NA	NA	NA	NA
WP_014062526.1\|825239_825650_+	hypothetical protein	Q24LG0	Clostridium_phage	1.6e-10	29.5

DBSCAN-SWA_4

1285987 : 1340913

uncultured_Mediterranean_phage(16.67%)

transposase,protease,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014062831.1\|1285987_1287154_+\|tRNA	CCA tRNA nucleotidyltransferase	A0A219YCT8	Aeromonas_phage	4.5e-18	31.2
WP_014062832.1\|1287156_1287765_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003867994.1\|1287761_1288499_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.7e-07	26.3
WP_003870641.1\|1288488_1288995_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.2e-22	39.3
WP_014062834.1\|1289138_1290398_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.4e-52	37.3
WP_052877853.1\|1292044_1293052_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.3e-58	39.9
WP_014062837.1\|1293456_1294065_+	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_014062838.1\|1294071_1294518_+	sporulation protein YtfJ	NA	NA	NA	NA
WP_041589212.1\|1296224_1297364_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_014062067.1\|1297808_1297967_+	hypothetical protein	NA	NA	NA	NA
WP_004396305.1\|1298107_1299079_+	sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA	NA	NA	NA
WP_014062841.1\|1299071_1300355_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003870648.1\|1300377_1301088_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_014062842.1\|1301091_1301469_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014062843.1\|1301514_1302348_+	polyamine aminopropyltransferase	A0A1C9C533	Heterosigma_akashiwo_virus	2.9e-27	35.5
WP_014062844.1\|1302349_1303216_+	agmatinase	NA	NA	NA	NA
WP_014062845.1\|1303294_1304692_+	oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA
WP_014062846.1\|1304803_1305226_+\|coat	SafA/ExsA family spore coat assembly protein	C1KFN7	Lactobacillus_virus	1.1e-09	39.3
WP_014062847.1\|1305259_1305898_-	hypothetical protein	NA	NA	NA	NA
WP_014062848.1\|1305976_1306735_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.0e-47	41.9
WP_003870657.1\|1306870_1307068_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_014062849.1\|1307064_1308204_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_014062850.1\|1308193_1309018_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_014062851.1\|1309014_1309578_+	2-oxoglutarate ferredoxin oxidoreductase subunit gamma	NA	NA	NA	NA
WP_003870661.1\|1309556_1310420_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_014062852.1\|1310518_1311769_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_014062853.1\|1311840_1312548_+	hypothetical protein	NA	NA	NA	NA
WP_006570430.1\|1312566_1313196_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_014062854.1\|1313192_1314413_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	4.3e-19	46.5
WP_014062855.1\|1314483_1314945_+	hypothetical protein	NA	NA	NA	NA
WP_014062856.1\|1315014_1315362_+	chorismate mutase	NA	NA	NA	NA
WP_004396278.1\|1315372_1316038_+	(d)CMP kinase	NA	NA	NA	NA
WP_014062857.1\|1316040_1316619_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_014062858.1\|1316629_1317496_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_014062859.1\|1317482_1318586_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_014062860.1\|1318775_1319819_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.3e-58	40.1
WP_003866794.1\|1320038_1320413_+	S-adenosylmethionine decarboxylase proenzyme	H6T521	Synechococcus_phage	3.7e-22	44.9
WP_004396269.1\|1320494_1321274_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_014062861.1\|1321291_1322707_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_014062862.1\|1322770_1325374_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	5.6e-61	27.5
WP_014062864.1\|1327229_1328177_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003869105.1\|1328219_1328480_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_014062865.1\|1328550_1329345_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.6e-41	39.6
WP_014062866.1\|1329347_1329806_+	ribonuclease HI	A0A1P8DJF0	Virus_Rctr71	9.6e-33	51.9
WP_004396249.1\|1329981_1330974_+	tyrosine recombinase XerC	A0A1B1P7C7	Bacillus_phage	2.5e-17	27.5
WP_014062867.1\|1331023_1332298_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_014062868.1\|1332302_1333214_-	stage V sporulation protein K	G3MAX6	Bacillus_virus	1.7e-57	46.1
WP_014062869.1\|1333283_1334705_-	adenylosuccinate lyase	NA	NA	NA	NA
WP_014062870.1\|1334718_1335906_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_014062871.1\|1335961_1336798_-	PHP domain-containing protein	NA	NA	NA	NA
WP_003866776.1\|1336867_1337128_-	stage V sporulation protein S	J9PTX7	Bacillus_phage	5.5e-09	39.8
WP_014062872.1\|1337200_1337980_-	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
WP_014062873.1\|1338107_1339634_-	ribonuclease Y	NA	NA	NA	NA
WP_014062874.1\|1339869_1340913_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	4.0e-58	39.8

DBSCAN-SWA_5

1695382 : 1764805

uncultured_Caudovirales_phage(10.0%)

transposase,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014062090.1\|1695382_1696660_+\|transposase	transposase	NA	NA	NA	NA
WP_014063093.1\|1697017_1697440_+	transcriptional repressor	NA	NA	NA	NA
WP_014063094.1\|1697486_1698962_-	VanW family protein	NA	NA	NA	NA
WP_041589222.1\|1699060_1699702_-	endonuclease III	NA	NA	NA	NA
WP_014063096.1\|1699707_1700832_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_012269149.1\|1700831_1703192_-	ATP-binding protein	NA	NA	NA	NA
WP_003868666.1\|1703299_1703527_-	alpha/beta-type small acid-soluble spore protein	NA	NA	NA	NA
WP_003870210.1\|1703610_1703799_-	ferredoxin	NA	NA	NA	NA
WP_003870211.1\|1703921_1704578_-	iron-dependent repressor	NA	NA	NA	NA
WP_014063097.1\|1704634_1705975_-	radical SAM protein	NA	NA	NA	NA
WP_014063098.1\|1706118_1707759_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-10	55.1
WP_014063099.1\|1707902_1709546_-	nucleoside kinase	A0A2K9L178	Tupanvirus	1.0e-07	27.2
WP_014062090.1\|1709741_1711019_+\|transposase	transposase	NA	NA	NA	NA
WP_014062134.1\|1711491_1712922_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_014063105.1\|1718082_1718883_+	AAA family ATPase	NA	NA	NA	NA
WP_003869952.1\|1720107_1721130_-	DUF1646 domain-containing protein	NA	NA	NA	NA
WP_041589225.1\|1721509_1721899_+	hypothetical protein	NA	NA	NA	NA
WP_041589337.1\|1722682_1725376_-	calcium-transporting P-type ATPase, PMR1-type	M1HJQ2	Paramecium_bursaria_Chlorella_virus	2.4e-67	28.3
WP_014063107.1\|1725577_1726024_-	hypothetical protein	NA	NA	NA	NA
WP_014063108.1\|1726201_1727653_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_014063109.1\|1727768_1728929_-	UxaA family hydrolase	NA	NA	NA	NA
WP_041589338.1\|1728925_1729225_-	UxaA family hydrolase	NA	NA	NA	NA
WP_014063112.1\|1731396_1732725_-	carbohydrate kinase	NA	NA	NA	NA
WP_014062211.1\|1734423_1735701_+\|transposase	transposase	NA	NA	NA	NA
WP_014063114.1\|1735990_1736986_-	C-terminal binding protein	A0A2R8FDS8	Brazilian_cedratvirus	6.1e-32	33.2
WP_014063115.1\|1737399_1738710_-	DUF2088 domain-containing protein	NA	NA	NA	NA
WP_014063116.1\|1738853_1739828_-	hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	4.7e-29	33.7
WP_041589226.1\|1739824_1740724_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014063118.1\|1740980_1741907_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_014063119.1\|1741920_1742940_-	PHP domain-containing protein	NA	NA	NA	NA
WP_014063120.1\|1743008_1743656_-	HAD-IA family hydrolase	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	1.0e-11	28.7
WP_014063121.1\|1743670_1744129_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_014063122.1\|1744153_1745095_-	transketolase	NA	NA	NA	NA
WP_014063123.1\|1745087_1745933_-	transketolase	A0A0P0YMZ3	Yellowstone_lake_phycodnavirus	1.1e-10	33.9
WP_014063124.1\|1745964_1747167_-	transaldolase	NA	NA	NA	NA
WP_014063125.1\|1747362_1749093_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_014063126.1\|1750024_1750921_+	radical SAM protein	NA	NA	NA	NA
WP_014063127.1\|1750912_1751770_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.1e-13	27.1
WP_003868658.1\|1751856_1752321_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003868657.1\|1752309_1752507_-	YgiT-type zinc finger protein	NA	NA	NA	NA
WP_014063128.1\|1752746_1754312_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	6.8e-163	54.9
WP_156786947.1\|1754588_1755854_-	AAA family ATPase	G3MBE0	Bacillus_virus	3.2e-94	44.2
WP_014063130.1\|1755925_1756300_-	HIRAN domain-containing protein	NA	NA	NA	NA
WP_014063131.1\|1756339_1756948_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_014063132.1\|1756944_1758045_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014063133.1\|1758455_1759025_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_014063134.1\|1759105_1760308_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_014063135.1\|1760724_1760961_-	hypothetical protein	NA	NA	NA	NA
WP_014063137.1\|1762505_1762922_+	HutP family protein	NA	NA	NA	NA
WP_004400040.1\|1762993_1763140_+	hypothetical protein	NA	NA	NA	NA
WP_014063138.1\|1763152_1764280_+	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA
WP_014063139.1\|1764369_1764543_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_003868342.1\|1764547_1764805_+\|coat	spore coat protein CotJB	NA	NA	NA	NA

DBSCAN-SWA_6

2129111 : 2191063

unidentified_phage(16.67%)

transposase,integrase

attL 2170707:2170722|attR 2200016:2200031

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014063390.1\|2129111_2130362_+\|transposase	transposase	NA	NA	NA	NA
WP_014063391.1\|2132758_2133124_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014063392.1\|2133126_2133495_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014063394.1\|2137308_2137890_-	hypothetical protein	NA	NA	NA	NA
WP_052877863.1\|2141133_2142060_-	hypothetical protein	NA	NA	NA	NA
WP_014063397.1\|2142200_2142836_-	cobalamin-binding protein	NA	NA	NA	NA
WP_014063398.1\|2142867_2144106_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052877864.1\|2144118_2145843_-	DUF4445 domain-containing protein	NA	NA	NA	NA
WP_052877865.1\|2145862_2146348_-	hypothetical protein	NA	NA	NA	NA
WP_052877866.1\|2146352_2146616_-	hypothetical protein	NA	NA	NA	NA
WP_014063400.1\|2147792_2148905_-	hypothetical protein	NA	NA	NA	NA
WP_014063401.1\|2148901_2149315_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_014063402.1\|2149627_2150467_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_014063403.1\|2150463_2151237_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_014063404.1\|2151249_2151789_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_014063405.1\|2151897_2154600_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
WP_014063406.1\|2154902_2155946_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.6e-59	40.1
WP_156786939.1\|2157411_2158293_-	DUF89 family protein	NA	NA	NA	NA
WP_041589355.1\|2158423_2160163_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_041589241.1\|2160211_2160769_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_014063410.1\|2160804_2161584_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_014063411.1\|2161663_2162485_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_014063412.1\|2162474_2163248_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_014063413.1\|2163277_2163772_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_052877867.1\|2163807_2164017_-	hypothetical protein	NA	NA	NA	NA
WP_083820909.1\|2164040_2164205_-	hypothetical protein	NA	NA	NA	NA
WP_014063415.1\|2164285_2165020_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_156786952.1\|2165483_2165663_-	hypothetical protein	NA	NA	NA	NA
WP_014063417.1\|2165882_2166536_-	hypothetical protein	NA	NA	NA	NA
WP_083820910.1\|2166687_2167791_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	1.0e-72	52.1
WP_041589243.1\|2168105_2169110_-	hypothetical protein	NA	NA	NA	NA
WP_014063420.1\|2169138_2169363_-	DUF3006 domain-containing protein	NA	NA	NA	NA
WP_052877868.1\|2169671_2169959_-	hypothetical protein	NA	NA	NA	NA
2170707:2170722	attL	NA	NA	NA	NA
WP_003870034.1\|2171256_2172069_+	Ku protein	A0A218M9C0	Mycobacterium_phage	6.9e-42	35.2
WP_014063422.1\|2172083_2173007_+	DNA ligase	A0A2H4JD86	uncultured_Caudovirales_phage	9.0e-46	40.3
WP_014063423.1\|2173009_2173399_-	YjbQ family protein	NA	NA	NA	NA
WP_014063424.1\|2174730_2180670_-	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_041589245.1\|2180904_2182782_-\|transposase	transposase	NA	NA	NA	NA
WP_041589246.1\|2182787_2184449_-	AAA family ATPase	NA	NA	NA	NA
WP_014063427.1\|2184441_2186604_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_014063428.1\|2186590_2187451_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_014063429.1\|2187537_2188059_-	hypothetical protein	NA	NA	NA	NA
WP_014063430.1\|2188152_2189073_-	hypothetical protein	NA	NA	NA	NA
WP_014063431.1\|2189117_2189333_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014063432.1\|2189478_2190027_+	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	1.1e-11	43.5
WP_014063433.1\|2190187_2191063_+\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	1.4e-32	31.6
2200016:2200031	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2621135 : 2702701

Wolbachia_phage(13.33%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014063697.1\|2621135_2622044_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014063698.1\|2622207_2622645_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	3.0e-15	35.9
WP_014063699.1\|2622685_2624044_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_041589264.1\|2624067_2624514_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_014063701.1\|2624519_2625452_-	1-phosphofructokinase	NA	NA	NA	NA
WP_014063702.1\|2625417_2626248_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.1e-21	32.5
WP_014063703.1\|2626417_2628844_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_014063704.1\|2629086_2630445_-	copper amine oxidase	NA	NA	NA	NA
WP_014063705.1\|2630463_2632050_-	DUF4127 family protein	NA	NA	NA	NA
WP_014063706.1\|2632306_2633740_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_014063707.1\|2633762_2635733_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_004399083.1\|2635812_2636226_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_014063708.1\|2636213_2636495_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014063709.1\|2636600_2638202_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.2e-156	52.9
WP_014063710.1\|2638396_2638684_-	UPF0175 family protein	NA	NA	NA	NA
WP_014063711.1\|2638820_2639639_+	histidinol-phosphatase	NA	NA	NA	NA
WP_014063712.1\|2639861_2642351_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014063714.1\|2642798_2644400_-	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	5.9e-45	34.1
WP_014063715.1\|2644413_2645496_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_014063716.1\|2645733_2651694_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	3.8e-12	31.8
WP_014063717.1\|2652090_2653464_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	7.4e-20	27.0
WP_014063718.1\|2653579_2654506_-	homoserine kinase	NA	NA	NA	NA
WP_003871328.1\|2654495_2655551_-	threonine synthase	NA	NA	NA	NA
WP_014063719.1\|2655554_2656811_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_003871326.1\|2656822_2657263_-	ACT domain-containing protein	NA	NA	NA	NA
WP_014063032.1\|2657843_2659103_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	5.1e-52	37.0
WP_014063720.1\|2659583_2661002_+	amino acid permease	NA	NA	NA	NA
WP_003871085.1\|2661038_2661818_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	6.6e-42	40.2
WP_014063721.1\|2662078_2664004_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014063723.1\|2666001_2667315_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_014062373.1\|2667451_2668033_-	hypothetical protein	NA	NA	NA	NA
WP_003871087.1\|2668933_2669197_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_014063724.1\|2669213_2670206_-	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_014063725.1\|2670202_2670700_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_014063726.1\|2671028_2671757_-	peptidase E	NA	NA	NA	NA
WP_014063727.1\|2672091_2673312_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	2.2e-55	34.4
WP_009052108.1\|2679311_2681648_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_009052107.1\|2681662_2682373_-	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_014063728.1\|2682387_2683269_-	type I-B CRISPR-associated protein Cas7/Csh2	NA	NA	NA	NA
WP_041589265.1\|2685421_2685610_+	hypothetical protein	NA	NA	NA	NA
WP_041589266.1\|2685822_2686698_+\|transposase	transposase	NA	NA	NA	NA
WP_014063731.1\|2686946_2687702_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_014063732.1\|2687954_2689226_+	copper amine oxidase	NA	NA	NA	NA
WP_014063733.1\|2689253_2689667_-	SUF system NifU family Fe-S cluster assembly protein	A0A2P1CJL8	Mycobacterium_phage	4.6e-10	32.3
WP_014063734.1\|2689663_2690893_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.7e-108	45.3
WP_014063735.1\|2690889_2691939_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_003871433.1\|2691949_2693353_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_014063736.1\|2693372_2694119_-	Fe-S cluster assembly ATPase SufC	A0A2R8FG22	Brazilian_cedratvirus	7.1e-09	30.2
WP_003868733.1\|2694306_2694591_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	4.6e-09	37.3
WP_014063737.1\|2694683_2695268_-	glutaredoxin	NA	NA	NA	NA
WP_014063738.1\|2695485_2696478_-	deoxyribodipyrimidine photo-lyase	NA	NA	NA	NA
WP_014063739.1\|2696449_2697268_-	hypothetical protein	NA	NA	NA	NA
WP_014063741.1\|2698687_2699179_-	hypothetical protein	NA	NA	NA	NA
WP_014063742.1\|2699193_2700414_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	7.4e-64	35.2
WP_014063743.1\|2700542_2700944_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_003870755.1\|2700934_2701402_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_003870754.1\|2701419_2701587_-	CxxH/CxxC protein	NA	NA	NA	NA
WP_014063744.1\|2701597_2702701_-\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	1.1e-10	29.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015958

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection