CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017935	Mesotoga prima MesG1.Ag.4.2 plasmid pTHEBA.01, complete sequence	0 crisprs	NA	0	0	0	0
NC_017934	Mesotoga prima MesG1.Ag.4.2, complete sequence	10 crisprs	DEDDh,PrimPol,cas3,DinG,RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,csa3,cas3HD,csm3gr7	0	10	0	0

1. NC_017934

CRISPR-Cas detection and classification

Crispr_ID: NC_017934_1

• CRISPR_ID: NC_017934_1
• CRISPR_location: 161283-161397
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017934_1

Consensus_repeat	Method
CTGTGCGCTTAAGAACAAAAAACCGCTGGCCGC	CRISPRCasFinder

spacers of NC_017934_1

>1.1|161316|49|NC_017934|CRISPRCasFinder
AGTAAAGAAACATCCCTCAAGATCGTGGACCCGTCCTTCGAAAGAGCCG

CRISPR arrays and Neighbor proteins around NC_017934_1

CRISPR arrays

The CRISPR arrays of NC_017934_1

>merge|NC_017934|1|161283-161397|CRISPRCasFinder
CTGTGCGCTTAAGAACAAAAAACCGCTGGCCGCAGTAAAGAAACATCCCTCAAGATCGTGGACCCGTCCTTCGAAAGAGCCGCTGTGCGCTTAAGAACAAAAACCCGCTGGCCGC

>NC_017934|1|1|161283-161397|CRISPRCasFinder
CTGTGCGCTTAAGAACAAAAAACCGCTGGCCGC	AGTAAAGAAACATCCCTCAAGATCGTGGACCCGTCCTTCGAAAGAGCCG
CTGTGCGCTTAAGAACAAAAACCCGCTGGCCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_006490371.1|170315_171164_+|hypothetical-protein	unknown	unknown	gnl|CDD|223161
NC_017934.1|WP_014730059.1|157489_158446_+|ribokinase	unknown	unknown	gnl|CDD|224030
NC_017934.1|WP_014730064.1|164461_164773_+|thioredoxin-family-protein	unknown	unknown	gnl|CDD|239245
NC_017934.1|WP_014730065.1|167119_169276_+|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NC_017934.1|WP_014730070.1|177177_179334_+|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NC_017934.1|WP_014730061.1|159901_160747_+|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl|CDD|376459
NC_017934.1|WP_014730069.1|173975_175595_+|cobalamin-B12-binding-domain-containing-protein	unknown	unknown	gnl|CDD|376761
NC_017934.1|WP_014730055.1|153525_154767_+|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270303
NC_017934.1|WP_014730066.1|169272_170319_+|threonine-synthase	unknown	unknown	gnl|CDD|236013
NC_017934.1|WP_014730063.1|163841_164399_-|CoA-pyrophosphatase	unknown	unknown	gnl|CDD|239518
NC_017934.1|WP_014730062.1|162673_163837_-|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|341466
NC_017934.1|WP_014730058.1|156537_157506_+|transcriptional-regulator	unknown	unknown	gnl|CDD|225263
NC_017934.1|WP_014730056.1|154834_155701_+|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_017934.1|WP_014730057.1|155697_156534_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_017934.1|WP_014730053.1|149393_150725_-|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|224157
NC_017934.1|WP_014730060.1|158442_159900_+|pentulose/hexulose-kinase	unknown	unknown	gnl|CDD|198352
NC_017934.1|WP_014730067.1|171187_172612_-|asparagine-synthase	unknown	unknown	gnl|CDD|236513
NC_017934.1|WP_014730068.1|172894_173974_+|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|376763
NC_017934.1|WP_014730054.1|150822_152193_+|sodium:glutamate-symporter	unknown	unknown	gnl|CDD|223857
NC_017934.1|WP_158309293.1|148595_148712_-|hypothetical-protein	unknown	unknown	gnl|CDD|234688

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_006490371.1|170315_171164_+|hypothetical-protein	gnl|CDD|223161	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism].	5.92657e-71
NC_017934.1|WP_014730059.1|157489_158446_+|ribokinase	gnl|CDD|224030	COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism].	1.69509e-54
NC_017934.1|WP_014730064.1|164461_164773_+|thioredoxin-family-protein	gnl|CDD|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.90273e-22
NC_017934.1|WP_014730065.1|167119_169276_+|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	1.24196e-171
NC_017934.1|WP_014730070.1|177177_179334_+|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	1.05552e-170
NC_017934.1|WP_014730061.1|159901_160747_+|class-II-fructose-bisphosphate-aldolase	gnl|CDD|376459	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.	1.04249e-115
NC_017934.1|WP_014730069.1|173975_175595_+|cobalamin-B12-binding-domain-containing-protein	gnl|CDD|376761	pfam02310, B12-binding, B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase, and methylmalonyl-CoA mutase. It contains a conserved DxHxxGx(41)SxVx(26)GG motif, which is important for B12 binding.	1.34261e-07
NC_017934.1|WP_014730055.1|153525_154767_+|sugar-ABC-transporter-substrate-binding-protein	gnl|CDD|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.31817e-93
NC_017934.1|WP_014730066.1|169272_170319_+|threonine-synthase	gnl|CDD|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NC_017934.1|WP_014730063.1|163841_164399_-|CoA-pyrophosphatase	gnl|CDD|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	2.06516e-32
NC_017934.1|WP_014730062.1|162673_163837_-|iron-containing-alcohol-dehydrogenase	gnl|CDD|341466	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction is 50-fold lower than that in the forward direction. The NADH-BDH has higher activity with longer chained aldehydes and is inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. This family also includes E. coli YqhD enzyme, an NADP-dependent dehydrogenase whose activity measurements with several alcohols demonstrate preference for alcohols longer than C3. The active site of YqhD contains a Zn metal, and a modified NADPH cofactor bearing OH groups on the saturated C5 and C6 atoms, possibly due to oxygen stress on the enzyme, which would functionally work under anaerobic conditions.	0
NC_017934.1|WP_014730058.1|156537_157506_+|transcriptional-regulator	gnl|CDD|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.10464e-71
NC_017934.1|WP_014730056.1|154834_155701_+|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.80454e-82
NC_017934.1|WP_014730057.1|155697_156534_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.56965e-78
NC_017934.1|WP_014730053.1|149393_150725_-|MBL-fold-metallo-hydrolase	gnl|CDD|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	4.33592e-72
NC_017934.1|WP_014730060.1|158442_159900_+|pentulose/hexulose-kinase	gnl|CDD|198352	cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases. This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	3.06819e-82
NC_017934.1|WP_014730067.1|171187_172612_-|asparagine-synthase	gnl|CDD|236513	PRK09431, asnB, asparagine synthetase B; Provisional.	1.05371e-145
NC_017934.1|WP_014730068.1|172894_173974_+|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein	gnl|CDD|376763	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain. This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. The Pfam family consists mainly of octopine and nopaline dehydrogenases from Ti plasmids.	4.13612e-62
NC_017934.1|WP_014730054.1|150822_152193_+|sodium:glutamate-symporter	gnl|CDD|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	2.6058e-11
NC_017934.1|WP_158309293.1|148595_148712_-|hypothetical-protein	gnl|CDD|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.28552e-05

Protein sequences

>NC_017934.1|WP_014730061.1|159901_160747_+|class-II-fructose-bisphosphate-aldolase
MPLVPLTEVLKDAQAKKYAVPGFNFHLYEDLVAIVEAAQEARSPVILMAAGTCMKHWGPTLAAALIKEVADSVDIPVVAHLDHASSLELIFKSIHAGFTSVMYDGSMLPVEENIANSKIVVKVARAFDVSVEAELGRVAKGEEGESAVEILTDPSDVVMFCEATDVDALAVAVGTVHGMQKQEAKIHLDLVDAISEVSPVPLVLHGSSGVSDNDLRYIATTGFSKINIGTRLKTVFTEGIREVLQNDPDLNDQLKLLKLAVPRVKDTVKEKIELLGSGNRA
>NC_017934.1|WP_014730060.1|158442_159900_+|pentulose/hexulose-kinase
MNVFLGIDIGTTNIKCLVLGEDGRILEVIHSLTPKNKERGVEFLDLELTRSYVESIIGKVGALHSLAAIAFSSFGETVIPVRQRKALSKPVMWYDRSTYPLWESHRESVDNLAPYRITGVENSYTFSLYKILLQKELFRPEGVENWLPVSSYLAYSLGGVPAWDMSQACRSFMVNIHSRRWNSQLIKYIGESEETMGELRYTGEPVGHTKSGIPLISAGHDHITGLYAARAFARGKEFLFDSMGSASVIAAVVSGTAESLDFAGPFMPGGTVGIAYEDHQYYIESNVRYYGKLLQSLMDLTQTDATKEGYERLNNEIEKLGQLNSRPLFLVNGDLVVGEGLQGITLLEMPIPLNKEQLMQSAYIYLSSISKRIVDNIEKITRKELPIISGGGGSLNSLLMKYKASLLGKEIWVLPTSELTALGGAFAAAHGVGADEVIEKCVNLLEPEEIHPDEHLVEPLKEIYEKNAKEYLAIERNKKLDIQEG
>NC_017934.1|WP_014730059.1|157489_158446_+|ribokinase
MKEDNNIDTCILNLNPCYDHWVILKNPTKIPNVVRGDKVVTLVDGKGLNIARVLSKVLGHSEYFCINILGGQVGTIIEKECDRLGIVTENFWIEDSNRINTALVYEYENKMLMINEPGPLMKPGEIESFMEFFKGHVRPGMNLVISGSAPRGFENGSLLQLVRIAREAGCSLKVDIAGSWLSKIVTVSPELLKINADELKVAFGINKDDFKSMDDFRREYSIRDLIITNGKMGSVWLSESEKLHARSMKVFSDFSVGSGDSFFAGLIYGQEAKMSKREALKIATACGAANTMHYGAAIFEYSDVEKVIGDVVVTEVVL
>NC_017934.1|WP_014730058.1|156537_157506_+|transcriptional-regulator
MISDELLFEVATDYYVKGMLQKDIANKYGVSRVQISKYLKMAQERGIVHIEVEQPSVKTSIRREYEDFFRERYGLKKMFIARGARNEKTVLKALSREVHKYLRTLPEKPMNIGLGWGNTIFTVAESIERLERPDWQLIPLSGGTARLADKRFNINHIVQNFATRLSGKAVPMYLPFIFENARQLENTKQSLEYMNIQKLWNSLDIIICSVGYSIARSPLFRENLLEVSYADELEKNNVVGDVLTHYFDINGKRFEKSILDKCINLSFEQYMNAGERVIVAAGHHKVDGLVGMLRGGFADVLITDEFTAKFVKEYIVYDEGGQ
>NC_017934.1|WP_014730057.1|155697_156534_+|carbohydrate-ABC-transporter-permease
MKRSTKKKVKKSITYSLLIFLSVVIAFPFVWLILTAIKTYPDIYAYPIKYFIFEPTREHFDKIADMNFWSYFKNSVIVGTGTMFFSILIGLFPAYAFARYEFRFKRPLLTGVMVFQMLPVVVFLLPIFKTLNNIGILNTYFGLILSYLPFTTPISIMFMRTFFLSIPKSLEEAARIDGCTFGQAFRKVILPITLPGIAAVGVYAFLFSWSELMYSMSILTSKAKQTIPTFLQLFVGQYQTRWGPLFAGSILATIPPLIIFMILQKFFIAGLVSGSVKE
>NC_017934.1|WP_014730056.1|154834_155701_+|sugar-ABC-transporter-permease
MSKLAREEKTAFKMVLPYLLIIVLLFVYLIGSNIYSSFTTEEGAFTLQNYSSVFTDPVVGRSMINTVVWVIGSVLGQLLLGLLVALLLNESTKGQIIFRSIILILPWATLDIVAGVMWKWMYNDMYGVLNDVLVKMNIINDYIPWLATENMAMISVIIANIWKGFCLSGMFFLAGLQTIPPDLYEAAEIDGANSIRRFWRITIPQLKPVIMTTLMLTVIWTINYFPLIYIMTGGGPGYGTETVVTYIYKLGFRFLEFNKAAALSNILFVAIFAIAFVFLRSIAKEEAR
>NC_017934.1|WP_014730055.1|153525_154767_+|sugar-ABC-transporter-substrate-binding-protein
MRKSTLLVFMMLVVLAFTGVSQVINIWIGGQVAELDETWEMIVGKFEEETGLKVEVQLFGFDIYYDKLLTALQAGQGPDLAFADLGGWVPTFAEKGWLEPMGALLDSWDGTEQIWPNLWPTVLHNGERYGLPWYTDCRLLLYNQTMFDQAGLDRNDPPATWEELVYQAMKLTDASKRVFGYGVSGTKTEHTTLAYIIFLYGAGGQLLTDDYSAAAFNTPEGLRALKFYTDLALTYAVSPNAVTYNEDDYRNMMAQNRVAMAVGGPWSFPLIETANPDIVGNYSVSLHPYGATPASVLGGWALVIPSASKNKDNAWELAKYLTSYETWMTWIEAKGGPMPSRQDVCFDSPVLQDPKWKVIFETFPHAVSRPPIPEYPQVSEQIQIMIQDVLLGKVTPEEAIKTAEANVNAILAK
>NC_017934.1|WP_014730054.1|150822_152193_+|sodium:glutamate-symporter
MEQDWTIVLDIAYLSILMGVASVLKRIITPLSKILIPNAVIAGFLGILFGPEVLKVIPFSYDRLGNLVYHLMAIGFIAIALKKTRRSSTKSSVNTGFLISMSYALQGMVGFVVGIALVGLFFKDLFPPFGLLLALGFAQGPGQAYSLGSQWEALGFTGGGAVGLSVSTLGFLWAAFGGIVMLNAMVYRKRQIGIQIEKPTLKKRIEATIRDFEFSDIDGFTIQILAVGIVYLVTYLFLKWFTGLIGGLGTFGETFAQVLWGFHFVIGVLFAMAFRAIYEKVRKSEKYEIEYMNDFLLQRIGGGVFDFMVAASIAGISFTVIQEYIWPIIILTTIGGFFTAGYTIWFGKRIYEKAPLEHIVTFFGMHTGTLSTGMALLREVDPTFESGTAEDMVFGSGLALFLGIPMLILLNIPILGYRMEQPIYYLYFILGLAAYIGAMYFFWFRKAKIRGKEKKS
>NC_017934.1|WP_014730053.1|149393_150725_-|MBL-fold-metallo-hydrolase
MTLTPLGGGREIGANSYLLSLDGKNILIDAGRHPVKEGYESLPEIDKINDLDVIMISHSHYDHLSSLPYISQRWPNAPILMAQENKGLALRILQNSVEVMKKKNAKDGVEPILYNHGEVNELKRRIYPMEYFQRYSIDDVVDVALYPAGHVMGAASIFLEHRGRRILYSGDISLSQQLTIPPAQLPKKVETLISEGTYGAKENQLLTRYSEIERLSKSVKRVLENGGRILMPVFALGRGQEAIYMLLMLMEKKKIPSVPIYTNGMVASLSSLYMSNYESISEKDRKWFIKSFQNNVTVAPKSIERLLFSREPALFVFSAGMLVEDTLSYIFAKQMLPNSKDAIFFMGYQSPESDGYKILQANKNGDERIQMGDDSIEIGTKNIDIFNFSGHADYQELLDLPRRLQPEKLIYVHGDEAALENLAEELQYEFEIQIPSNLQTVEL
>NC_017934.1|WP_158309293.1|148595_148712_-|hypothetical-protein
MRKQPVARNGQMVVVRINGQEGVIKYFHKRSDTVILTS
>NC_017934.1|WP_014730062.1|162673_163837_-|iron-containing-alcohol-dehydrogenase
MLDFTFHNATKIIFGRNTEKKVGEEISKLGKKVLFHYGGGSIKKTGIYDRVVESLKKAGVEIFELGGVKPNPRLSLVKEGIELCRKNGIDAILAVGGGSVIDSAKAIGIGVPYEGDVWDFYSKGKKVEEMLPLGVVLTIPAAGSESSGGSVITNEDGWYKRSTNSVNMRAKFAIMNPELTFTLPNYQTAVGAVDIMSHVMERYFTNVKNVDFTDRLCEATLRTMIRNTPIALKEPENYDARAEIMWAGTIAHNDLLSTGRIGDWATHGMEHELSAIYDIAHGGGLAIMWAPWMTYVYKHDIERFAQFAYRVWDVEPDFRNPEKAALEGIKGLKEFFASLGIPVTLTDAGIPDDRFDEMAKKATEDGPLGQFVKLYKDDVKKIYELAK
>NC_017934.1|WP_014730063.1|163841_164399_-|CoA-pyrophosphatase
MYSENQRTAVFVPIVKICGDYHLLLTRRSTRISHPGQISFPGGHREENETLLECAVREMKEEIGALPSSLDEIYPLNVSTTVTSGKVITSFLGFIDDLKFRINKNEVEDIVFLSVKSLIMNAPEPIIMPNGKRTIRYRFPGFVVWGATARIIEASIERIIEIIENRGSGKSDYLNDHEVIHIREE
>NC_017934.1|WP_014730064.1|164461_164773_+|thioredoxin-family-protein
MKEITLRELREVTGLVLVDFFSPGCGVCTAIETKLVAVEKDFPSWKFFKINTVENPAVASEYSVFTVPTIVVQTDGREQKRWSRYFSLEDVIEFLHEIDETEG
>NC_017934.1|WP_014730065.1|167119_169276_+|aspartate-kinase
MRIGIAGLGTVGSCVYAILSDKGDEIEKRSGRRCVVSKVITRTHSKYEKLGIPSDLIAEDFEDLIINSDIVVETIGGTEAARKLVKQSLELNRTVVTANKMLISEFGNEFMNSSPIKSLFFEAAVGGGIPIISLLEDYLIFHGIKRIRGILNGTTNFILSEMQKGIDYASALKIAQEKGYAEADPSSDVKGFDAAYKLSVLTGVKTGVFPGISTIETKGIEGIEKSDLERAATAGKKLKLIGTIDFERERASVQPQEVERDDPLWSVDGVENAIEVETDLSGRFLLRGEGAGAQPTATAIISDILRASRYAEKQSNSVVIMKFGGTSVDTPEKIKDVAQRVQRKVLSGVKPVLVVSAMGFETDTLHELAREISDKPNGREMDMLLATGEQKSIALVAMAIQELGMKSISLSGNQARIQTDSNFSNARIVGIDADLINRYLKNGYVPVVAGFQGSTFSGEITTLGRGGSDLTAVVLAKALGSQLCEIYKDVDGVYSADPRIVPNARPIKEISWEEMIELSKQGAQVLQSRASEFVRKYDIKVLVKNAHTNARGTLIWRGSKVEQPIVRAVTSDQDIVKVVLQEVPDRPGIAARVLKTLAEQNVNIDMIIQSMRSGDYNTMAFTIQASDLDKLKQDVLKSRSEAREITVEGAIAKLSIVGVNLTATPAIAATLFETLANEGINIDMISASNSRISVVIDNKKVSLAVNAIHSAFSLEEII
>NC_017934.1|WP_014730066.1|169272_170319_+|threonine-synthase
MKGVIESYEKFLPITPKTPKITLLEGNTPLIYLENISKQYGVKVYVKYEGANPTGSFKDRGMVLAIAKAIEEGSRAVICASTGNTSASAAAYSARTGLKSIILIPEGKIAIGKLAQAMIYGAKVIQIDGNFDNCLELAKKISENYPVTLVNSLNPYRLEGQKTAAFEIIDVLGRAPDYHFIPVGNAGNISAYWMGYREYREKGLSESQPRMMGFQAEGAAPIVYDRVFEHPETIATAIRIGNPASWKKAVAARDESGGVIEALTDEEILHAQKLLASAEGVFCEPASAASFGGFLRKAREGLFEASDIAVCTLTGNGLKDPDAVLKSVDRPLVVENDLEVVLKEAGLK
>NC_017934.1|WP_006490371.1|170315_171164_+|hypothetical-protein
MRLKAPATTANMGSGFDVVGMALKLHNTVQFEKANRFKVHSIGRYGLEIGDAAETFGNAIERFEKLTGKKVPALQIIQECEIPPARGLGSSAAAIASALFISNIMTGGRIPTDALLEIGTEIEGHPDNIVPCMVGGLTVSYYDGSRLDYEKFEMPDHRLTFLVPEFKLSTEAMRKALPDSIPFKDALGNIKNVSQFISKASRGDFAGALKYTKDFIHQSYRIDSDPRMKELVDRTEERNPGYWFVSGSGSSICCDLEDTGGLPYLEAVIRTSPANEPFIVEM
>NC_017934.1|WP_014730067.1|171187_172612_-|asparagine-synthase
MSGIVVTLKPERKMIEGSLSYLRHRGSKTRVLKTQGEASMGAVVSNAFDENMIVFEGTRESVVFDGILRNFPGEVWPRRILELYKENRSGFLNELDGSFAFAIDTDDETFVARDPLGLKPLYYGRCNGGIAFASELKALTPFCSHVQVFPPGHFFSSNEGFSEYSSLEDLLTERQVKSEEEAAKRLRTSLERAVDNRMTAVKSEPIVFLSGGLDSSCIAAVASKLNGSLKTFTVGSEEGKDPAFAKEVSRYLGTDHREYTYDFKEMLEVLPDVIYHLESFDPPLVRSAIPNYIVSKMAAEEDSSFVLMGEGADELFAGYEYMKELPSAESVDEESLRITKNGYLSGFQRNDRMALAFGIEFDVPFMDPNVVDLAFSIPVDWKIHGPEKTEKWILRKAFENDLPESVVWRKKSKFSVGSGSSHIMKEYAEEAISDSEFERERQNNGIRSKEELLYYRIFDEQFPCRGAADTVYRS
>NC_017934.1|WP_014730068.1|172894_173974_+|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein
MKIAVIGAGNGGQALSAVLAMRGHDVSLYNRSQKRISPLLLERKIRVEGESEGKAKLRYVGTDMKKAIEGAEAIMVVVPAFAHAKIAEKLAECIGEGQIVVLNPGRTGGALEFDKIFREKGVREKAVIAEAQTFVFASRISGPGMVRIFRIKNAVPISVLPSKDNESVFPIISEIMPEFTLAKNVLYTSFNNIGAVFHPGAILMNAGWIETKHGDFQFYLEGISPSVARVLEALDEERCEVTRKLGVEAMGAKEWLDYAYDVKGEDLYAAIHSNEGYRGIMAPISIENRYIMEDVPMSLVPMSCFGRELGVDTRVMDSIISIAGAVMGRDFWKEGRNLVSLGVDEMSVEELTRYVEEGT
>NC_017934.1|WP_014730069.1|173975_175595_+|cobalamin-B12-binding-domain-containing-protein
MKILAGAIGSDIHTAGILNFLNLARNEGYETIYIGSVIGIDKLLDSIEEASPDIVAVSYRLGKESCEQLLRELKVSLENRGIEKRLIFGGTVETAEVAEKSGLFEKVFDGSEMPEEVVMFLRGKTDEKGEVDYPQTLLERIASKKPYPLIRHHIGLETVDATEEAVRKLAESGLLDIISLAPDQNCQQWFFQQENMISSEDGAGGAPFRKREDFERMYAASRTGNYPLMRCYSGTRDLLKFSLLLKETLNNAWAAIPITWYSQLDGRSDRELLEAIRDNQAAIAWNGGKGIPVEINEAHQWALRYCHAAVEVATAYLAAMAAKRLGVQVYVAQYMFNTPPGISPKMDLAKALAKKELIESLEGDDFTVVTMVRPGLMSLPADPDMARGQLVSSVYTAMNIDPDIVHVVAYCEATRRATDVEIIESVKMAKQAINEAIKGLPDFRQDKEIHEHKQYLKSECKVIIEAIEKIKTGELTSPETIYTAVKTGILDAPGLSKMSVAKGAVRAAIIDGQSCAVDEEGKKIDENDRLTALSGANKD
>NC_017934.1|WP_014730070.1|177177_179334_+|aspartate-kinase
MRIGIAGLGTVGSCVYAILKDKGDEIEKRSGRKCIVSKVITRTHSKYDKLGIPSDLVAEDFEDLIINSDIVVETIGGSEAARKLVKQSLELNRTVVTANKMLISEFGNEFTNSSPIKSLFFEAAVGGGIPIISLLEDYLIFHGIKRIRGILNGTTNFILSEMQKGMDYASALKIAQEKGYAEADPTSDVKGYDAAYKLSVLTGVKTGVFPGISTIETKGIEGIDKSDLERAATAGKKLKLIGTIDFEREVASVQPQEIERNDPLWSVDGVENAIEVETDLSGRFILRGEGAGAQPTATAIISDILRASRYAEKQSNSVVIMKFGGTSVDSAEKIKDVAERVQKKVLSGVKPVIVVSAMGVETDKLHELAKEISSKPNGREMDMLLATGEQKSIALVAMAIQVLGMKSISLSGNQARIQTDSNFSNARIVGIDADLINRYLSNGYVPVVAGFQGSTYTGEITTLGRGGSDLTAVVLAKALGSQLCEIYKDVDGVYSADPRIVQKARPIKEISWEEMIELSKQGAQVLQSRASEFARKYDIKVLVKNAHSNARGTLIWRGSKVEQPIVRAVTSDDEIVKVVLQEVPDRPGIAARVLKTLAEQNVNIDMIIQSMRSGEFNTMAFTIHGSDLSKLKQDILKTRSEAKEITVESSIAKLSIVGVNLTATPAIAATLFETLANEGINIDMISASNSRISVVIDSNMVHLAVNAIHSAFSLEEIV

Crispr_ID: NC_017934_2

• CRISPR_ID: NC_017934_2
• CRISPR_location: 1713165-1713532
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

Consensus repeat of NC_017934_2

Consensus_repeat	Method
GTTTCCATACCACTATGGTTCTTACGCAAC	CRISPRCasFinder
GTTTCCATACCACTATGGTTCTTACGCAAC	CRT
GTTTCCATACCACTATGGTTCTTACGCAACA	PILER-CR

spacers of NC_017934_2

>2.1|1713195|38|NC_017934|CRISPRCasFinder,CRT
CATGTTGTTCTCCATTTCTATCGATTCGTCTTTGAAAT
>2.2|1713263|37|NC_017934|CRISPRCasFinder,CRT
AACCCCCCCTCATACCTTGACATCATGCTAATTACAT
>2.3|1713330|35|NC_017934|CRISPRCasFinder,CRT
AAGATGAAATGATAGACGGATTGCTGCCACTTAGC
>2.4|1713395|37|NC_017934|CRISPRCasFinder,CRT
GATACCCATGTGTGCGGTACCACATTGATAGGCCCGT
>2.5|1713462|40|NC_017934|CRISPRCasFinder,CRT
ACGCATGCAAGTTCTGTCACCATTCCGCAGTCGTTTACAA
>2.6|1713264|36|NC_017934|PILER-CR
ACCCCCCCTCATACCTTGACATCATGCTAATTACAT
>2.7|1713331|34|NC_017934|PILER-CR
AGATGAAATGATAGACGGATTGCTGCCACTTAGC
>2.8|1713396|36|NC_017934|PILER-CR
ATACCCATGTGTGCGGTACCACATTGATAGGCCCGT

CRISPR arrays and Neighbor proteins around NC_017934_2

CRISPR arrays

The CRISPR arrays of NC_017934_2

>merge|NC_017934|2|1713165-1713532|CRISPRCasFinder,CRT,PILER-CR
CAATTCATACCACTATGGTTATTACGCAACCATGTTGTTCTCCATTTCTATCGATTCGTCTTTGAAATGTTTCCATACCACTATGGTTCTTACGCAACAACCCCCCCTCATACCTTGACATCATGCTAATTACATGTTTCCATACCACTATGGTTCTTACGCAACAAGATGAAATGATAGACGGATTGCTGCCACTTAGCGTTTCCATACCACTATGGTTCTTACGCAACGATACCCATGTGTGCGGTACCACATTGATAGGCCCGTGTTTCCATACCACTATGGTTCTTACGCAACACGCATGCAAGTTCTGTCACCATTCCGCAGTCGTTTACAAGTTTCCATACCACTATGGTTCATACAAGAGC

>NC_017934|2|2|1713165-1713532|CRISPRCasFinder
CAATTCATACCACTATGGTTATTACGCAAC	CATGTTGTTCTCCATTTCTATCGATTCGTCTTTGAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	AACCCCCCCTCATACCTTGACATCATGCTAATTACAT
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGATGAAATGATAGACGGATTGCTGCCACTTAGC
GTTTCCATACCACTATGGTTCTTACGCAAC	GATACCCATGTGTGCGGTACCACATTGATAGGCCCGT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACGCATGCAAGTTCTGTCACCATTCCGCAGTCGTTTACAA
GTTTCCATACCACTATGGTTCATACAAGAGC

>NC_017934|2|1|1713165-1713531|CRT
CAATTCATACCACTATGGTTATTACGCAAC	CATGTTGTTCTCCATTTCTATCGATTCGTCTTTGAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	AACCCCCCCTCATACCTTGACATCATGCTAATTACAT
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGATGAAATGATAGACGGATTGCTGCCACTTAGC
GTTTCCATACCACTATGGTTCTTACGCAAC	GATACCCATGTGTGCGGTACCACATTGATAGGCCCGT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACGCATGCAAGTTCTGTCACCATTCCGCAGTCGTTTACAA
GTTTCCATACCACTATGGTTCATACAAGAG

>NC_017934|2|1|1713233-1713462|PILER-CR
GTTTCCATACCACTATGGTTCTTACGCAACA	ACCCCCCCTCATACCTTGACATCATGCTAATTACAT
GTTTCCATACCACTATGGTTCTTACGCAACA	AGATGAAATGATAGACGGATTGCTGCCACTTAGC
GTTTCCATACCACTATGGTTCTTACGCAACG	ATACCCATGTGTGCGGTACCACATTGATAGGCCCGT
GTTTCCATACCACTATGGTTCTTACGCAACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731170.1|1722758_1725854_-|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223588
NC_017934.1|WP_006489374.1|1698529_1699408_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl|CDD|275209
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|213662
NC_017934.1|WP_014731165.1|1707259_1709578_-|hypothetical-protein	unknown	unknown	gnl|CDD|372045
NC_017934.1|WP_006489376.1|1696649_1697678_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_017934.1|WP_006489375.1|1697693_1698518_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl|CDD|275209
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_006489367.1|1701776_1702052_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl|CDD|198034
NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_014731169.1|1719482_1722710_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_006489366.1|1705019_1706423_+|DUF1254-domain-containing-protein	unknown	unknown	gnl|CDD|227659
NC_017934.1|WP_014731163.1|1695004_1696645_-|DUF4185-domain-containing-protein	unknown	unknown	gnl|CDD|379383
NC_017934.1|WP_006489371.1|1699463_1700708_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270451

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	3.9e-49	161.8	0.0
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2e-89	295.4	0.0
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	9.1e-70	230.2	0.1
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.7e-39	130.6	0.0
NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.4e-29	97.4	0.0
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	9.7e-51	168.1	0.0
NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	1.3e-48	160.1	0.0
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	4.9e-48	158.7	0.1
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.6e-38	126.5	0.0
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.8e-18	60.8	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731170.1|1722758_1725854_-|DEAD/DEAH-box-helicase	gnl|CDD|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	2.60273e-75
NC_017934.1|WP_006489374.1|1698529_1699408_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	9.19581e-81
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.25246e-28
NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase	gnl|CDD|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.44764e-178
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.1734e-41
NC_017934.1|WP_014731165.1|1707259_1709578_-|hypothetical-protein	gnl|CDD|372045	pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding. This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.	0.00143519
NC_017934.1|WP_006489376.1|1696649_1697678_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.56325e-101
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.28536e-17
NC_017934.1|WP_006489375.1|1697693_1698518_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.88431e-85
NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase	gnl|CDD|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.55902e-179
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.35605e-81
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.41289e-68
NC_017934.1|WP_006489367.1|1701776_1702052_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl|CDD|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	8.98854e-06
NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.81609e-25
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.5233e-44
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.73895e-38
NC_017934.1|WP_006489366.1|1705019_1706423_+|DUF1254-domain-containing-protein	gnl|CDD|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	8.07043e-70
NC_017934.1|WP_014731163.1|1695004_1696645_-|DUF4185-domain-containing-protein	gnl|CDD|379383	pfam13810, DUF4185, Domain of unknown function (DUF4185).	3.2743e-72
NC_017934.1|WP_006489371.1|1699463_1700708_-|ABC-transporter-substrate-binding-protein	gnl|CDD|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.54975e-76

Protein sequences

>NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase
MRSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVKAIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVTRQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFIQANGRVEERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLESLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSFTPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLSQLNKALVQWVRNKYKKRRGRTKAGKWLETLARREPRLFVHWTMGIFYTAG
>NC_017934.1|WP_014731165.1|1707259_1709578_-|hypothetical-protein
MKRFMYVVSIVLTIIISLSSCVKPVPPVDTTDLKGVVMTDGEHDGFVRLLSTSDTLIGEESVYRLGGFFYKSDVLLPKSFLIEASITFGEMELDYYYEVSDLGPDEIIYIGPISTLIHKYHLKHPEKSLNDVRGEVLIFLSIDPGHSDYTIAMNRGKFSITNFMNSALAHGGFDSFIDFLVDDLSVGGGPHDFGDYEEDPEASIFESLIGELNENLESSAIDYATGWVFDMIGGGNGDNPEADIEKLLELQLEMLKDIKTELDQIEEELKEAVNEIISAVDKSTYNTAVTVIADEVGTIEAKYQNIVYYAALDPDKKYESDIELLSRQIKDEIPNSFMTIRDVLEGRAGAESLFSLWSRIAFKDASDISEYVAMISSQFSYYFALQLKAINLMVEVYHAEDPANVGMAASCFNDWLNNLRDELDLFNTFNPISELATSTTFPTINTVDDWFAWPDISSMFLVGDRIVVTDGGWVQAPTEDPNIEIYSVDSMTLQDRHKYSQISLSYRATAVDDTNLYLLYHLQNNNYRLYKSEVDASEEDWTYSDFTLEHGCLQMAANSQWIFILGGDRDGFYLNIRDKATLAHHKTVQLTGSSGYSSQSVAMTSDGDYAYFLFSNGNKLLSVDLKTLEILDTINFGSTISDFPNMIVRDDILCVSTAYHDVFFVDTSDKADLNLFKTIEFDPNQADQCSPLNVNFAGNFTYAAGAMPWVIYVVYDNPRNLTGPMFKENMSAQSLLNWQPLLMNGEDELYILGNSNTLQLWKKYVVVDIPLY
>NC_017934.1|WP_006489366.1|1705019_1706423_+|DUF1254-domain-containing-protein
MLCRKHIALLIITLSFLSLLLSSENEFTTDCDEAREIAKQAYIFAYPMLEDFKTMTIQAIGPGLFNKFYNSRKLRGPDYKEVVRPNNDNIYSALWLDLRSEPVVVSVPAVEDRYYSFQMIDMYTHNFAYVGTRATGTGARTFVISGAFWQGSVPTGVDDVFRSEGNFVLCLVRIAVDMEVEGDLDKVLEIQKGHEIQPLSSYLGEEAPPAADPTIFPTYDTTKAESVEFISYFNFLLGQLEVHPSEKELIEQFGKIGIGPNLPFDFNSMPLGIREAVEEGIKGALETIRNPGEMVGISKNGWNLTKRIFGSREEMQGKYEVRAAAAYLGLYGNSLEEAYCPNGLVDGDGDVYDGSKFKYVLSFDSDELPPVEPKGFWSITMYGEDQFLVANEINRYSIGDRTNMKYGEDGSLVIYIQHESPGADKESNWLPAPDGIFSISMRIYLPSEVALNPLYCPPPVMKSGMAN
>NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase
MRSYEIPKKVVLEAFKKVKENRGAEGIDEVSLKEFEADLDNNLYKIWNRMSSGSYFPPPVKAIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVTRQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVEERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLESLKERLEECKLELHPEKTRIVYCKDDKRKDEYPNTSFDFLGYTFRVRSCKARNGRIFYSFTPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLSRLNKALVQWVRNKYKKRRGRTKAGKWLETLARREPRLFVHWTMGIFYTAG
>NC_017934.1|WP_006489367.1|1701776_1702052_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MSTRLLRPTERGQITIPKEARDKLKITPDSRFKVSVEGDKIIYQLVSPFDMIVKEFQKEAEARGYTKEELENELEKVRKKLFKEIYDESDD
>NC_017934.1|WP_006489371.1|1699463_1700708_-|ABC-transporter-substrate-binding-protein
MKKLLLLFLVSAFLVVTALSAEITFWKFTDTYADPTIQRFVDLWNEENPDKKVVFETFPWGDYTGTKLTTAFATGEGPDVFFISPGDFLRYVNTGIALPLSKYLTEDIIADFLPETIEAVTVGGEIYALPLEMEPVAIFYNKAAFEEKGISQPQDWAELKEAAAKLKTADRYGIIVEVAPGYYQNFTWYPFLWTAGGDVVDENWEKSAFESEGAIAALDLWGSFVKEGLAPSSLPAGANDIGMFGNGLADMIVCGFWGVKQLQTQFPEFDFGVFPIPPYEKGGESISVYGGWKMMLNAKGKNTDIAAEFARWLVAEQIDFPLDWCTVTNSKFSPRYSVLEAGNEFYNTPPNDVFLEILKTSKSEPTFTPEMVKAVSDAIQAVMFAGMDPKAAAKGASAAINAYLSRYTGGVPGK
>NC_017934.1|WP_006489374.1|1698529_1699408_-|sugar-ABC-transporter-permease
MNRKTRERLVGYSFIAPDITGLIIFAMVPAIVALVISFFSWNGLSDMLFVGLDNYRTMFQDPQWRNSIFVTLKYSVFFVPMNFLFALLLAMLVQKPGPGIGLFRAIFFAPTAMSMVAVSFVWKYMFQPYGFVNYFLSFFGITRQPLLGSMSQALYCITVVSLYMSVGYYMVIFLAGLNEISNEYYEAAEIDGASGFQKFLYITLPLLKPTTAFVLVMTFLQSFQVFDQIYILTGGGPFYSTSTAAFYIYYNAFQMYQFGYSSAQAFTLFAILLVVSYFMLRALRGGNVSTGS
>NC_017934.1|WP_006489375.1|1697693_1698518_-|carbohydrate-ABC-transporter-permease
MKTRIVKGILRYVLLVALAMFFLFPIYWMFVSSLKSPSEIFAFPPKLIPENPVWSNYSKVFSQVPFARYMLNTFFVASVVTIVALLLHSMAAYSLARLRYPGRNVLFILVISTLMIPFSAILIPLFLIVKNFGWIDSYRGLIIPAIPHAFGIFFLRQFYLGFPRELEEAAIIDGSGLVRVFFKIVLPLSKPVLSALAVFFFLANWNSFMWPLVIINSPEMRTVQLGIAQYGGEYNNPWAIQLAACTVALIPTLIVFVILQKQLMQSIKMTGMKL
>NC_017934.1|WP_006489376.1|1696649_1697678_-|LacI-family-DNA-binding-transcriptional-regulator
MAQRVTIKSIAEELGVSVASVSRALNGKGEVGPALEKRILQKADELGYIANYSARSLKHQKTNLIGVLVPDTFNPFFAHFVTKIEELLYDSGYEILLSTTRESLEKEREYLEIMVSKNVTGILAAPVDRTGNISIYKRVKAMDIPIVFFDRNVEGLDLSRVNVDNRSAVYKIVRYLYRKGHRRIAFVESVPNTSMGEERLAGYREAIKDFGLSEEFSLERFGLFIENDVKSQAAEILSHRPTALITGNLVITKAFLQALKTLRIKIPQELSLVSFDDIEWLEVTSPPITAFRQPIESLAMNAVALLKREMKNNESNSQIVVVEGELIIRDSVYDLSSEKQGG
>NC_017934.1|WP_014731163.1|1695004_1696645_-|DUF4185-domain-containing-protein
MIRVALLLLSVVLISSFLLATSLKDVTELEMVAKLTGPNAINNTLKYDVFGTDLGHSFNDGEITYFVFGDTFGINKTNWRKNVMAFTTDQDPSDGIIFEGFITGDGASTYAFSDNTVRLNVVKGADLWSSVDLAPKLLKSQLPGEWSIETRIESNSAPVGATNLCGLLFFSGVQNWIMWGHLGNRTMEASGIIGGKFVKIAEVASLYPYLRIENRLFSNTYVFSYSQDGENWIEAGTFDDKEGFLNSARYGIGAKEWGTSDYEVIFTDIAENSVNFSARELREAFYWGGPGESSGAAKELIHSTPGDITAIPTNGVAVNSRLYLHYMMVNYWGEPGRWNTSYSGLAVSKNGGRTWDVLDSVKWGSESNFAQVGIAKASQWPKIPDGCDVNSDTLFFFGIPSGRFGGVKLMKVDGEEIEKIDAYRYFSGLDNSGIPQWSSKEEDAEIIIEAPVGECSAMYNHFLGKWIITYLNEQSHDLEIRESPNPWGPWSKPHQLVSSREYSGLYGAFLNPLFVENDGEYIYFTMSLWTPYNVYLMKVRLIKQEV
>NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein
MGRQRRVITNVGGTIWFNLKKMYASPDSELSSSAIVSYLRKMSEDELKKISPEINGLGTFGVNKDDLLIFIATNTDVSKACMEALTELYRSRGINVITRVVEGLTDDSNTAFKKGIADYVDLIIGLFDNGEQWSYDNYFNATSGYRSLIPYTTIVAAVFDSRVFYLYENSPHLLELPPFPINFDFEIMEKHSSFFEKVDNDCVPVEEARKEFGNELFTKIVPQILLEEDGLVYLSNFGKILWGRYTVSNPEIYLSDSAQKVIDKDPVYLEYIKKMLRNEAEAEHQLHEYVGDAQCYKFPAKGVRVFYIRHGEEPLKIATILRNHDEYERYIRTEQHEAGLNYTKTRISI
>NC_017934.1|WP_014731169.1|1719482_1722710_-|hypothetical-protein
MSEKLEKEEKFLLDRTSHEKAIAAFKEEAERKTGIIQWYIMREENEEERVRLEIVPEKTGMRHVWTQTYKKRSSDSKDRIEREYSLDPTEVDLKNLETLPFVVKIRHYLEPKNKGIKEVILDEFLEKWKCDCQYLVEIEMNDGKEDRSIISEEASSWKFLKDLTGLTEEESKKYENKTLAKHHEESSAFKIIQYVENRLKPEQVVVALQGNSFFNKLGNLRNEYEREGFRKEKEYSVLRYKKKYNDDEELSCDLNEVLKNPCSYNDIRFLAAETDSIQHILNTGYSISDVEYIVFPDRPEGFSREDEPAIYGFLKALTENAFSKYGIDVHKRPMYYTGDNIESLSRAFTEIWKILDRIREEYPNKEILIDVTGGQKYPGIMASLYCIFNNLPFFYIFEGEVSLAKFPPVPASWDFGAIDEALAAFNSILIRNTTHSFERNHLKYSEYCSLPETFRNLYTASSNEDYLTSSLPLNVIESKYRKARGLPFGYGEDFLKLLDNDYSCTENYKNYLRKMIREVWSLQWIGDQIPETVEHSQRHSKRLMEFTVNLINTIGEENFLNGIPKQLRNEFYFVLAIAMNVHDLGHTKLTYELGDGRILPLDSLPCVVRDLHHELSYQMLEDDDRFRLFDDKQNSFDTDSCNKNTWDNIKTAVKLVTRYHREYMPITGKPGKLKDIVRMLSMEPEPLDKVVAASFADENWQKLTIMAARWLKFIDGTDVQSDRTVEPNYFKTRVLRTITEIEALAVELESNTEISPFIRNEVSDLVSEVGKLRASFEASEYKSMNRDLAISISNKASELEKNTLYPMIRKRIDECKGTITMPNWLKLLSKISFKAVQFPHFEKHNMVNYVYPRFFMEKSLFGNTDGTLRLSINIERESKNDMNSLIRIIDSVKKDIVKEFVRAGLNQFAIKTIKMEVTPLTEKILLTPLGTSPGVLYTLIKRLNPDRVIVITSQAGKDNIPEICMKAGFDIEKISTYLFNDPFTGFEEVQDIMRRMSSDFPVDIRSRITVNLAGGTSFLQYVTGEFAEVLESKMLDVTRVFAVDRRGIDAQKKEPYVVGDVVELPESKSWADKEE
>NC_017934.1|WP_014731170.1|1722758_1725854_-|DEAD/DEAH-box-helicase
MNELEPLKTLLSSRVKHATTLGAKTIVLKNAKKETLKCISEGEFKTISNDVNLDFKWYQTIKSLKGLLSVADHFSDSPVVITEWLYVVIKKYAPLFESYFGKVVAVDCGERASIDTGENISDELMPLFDIDGQFISVKDFPETETIPLFERITPIEVNTLDQLLNHTAGKKCTGIHLDKNLESFLIEAGVSLVSSSSNHEVIIVSSPAESVQSEVDREVSMLRAIGREVEVIDFTGYCPGEEARSIDLKNELKEHFGFDSFKEYEVYGKTGNYLVSQEELIRYLIDQNYRQDPSDLFFVASTGSGKSLIYQLTAKILKRDLDRLTVVITPLKALMEDQVNGLIERYFENGAAFLNSDLSFDEKSELTQRVRKGEITILYVSPETFVGNSLSSIIGERSIGLLVVDEAHLVTTWGKTFRVDYGYLGEDLRFLRSRLSFPVMATTATAISGGELNTISEISKLLCLKNPKTVMTNVRRDNIKFKIDSFELNQHSKDCRTAQKLSDSIDYAIDLVESGKKSIIYCPFVGQAHNIYNAIADLEECRNKVGRYTGPTETQERRLTQELFRKGIYRTVIATKAFGMGVDIPDIDEVFHHSVPSIMADYVQEIGRAGRDGRPSVASTHFHTKDLSDSLKLSKISVPEQWKMRHIMEHIGTLIRQSKNGEIVLSLDDIRYLLITGKDKYNEETIRDKARVAIFLIQKDLENKTGKQILIRKGETYQYLYFTASNDDAEELMKSFPEISRESAGYSRKGFFHNEEIRSVGAVYKIDISALWARLYRDRNLRKLVWQFMRFPSKILGKPVIPKIAVEMSVIKDMDSIKQQLTRFIEILGEFALDSARKQMDEKSLFDGIISKVKSASLLTGVQDLDIKIRNIVKNNFVSYNGDRFQTGLFKCRGEIGNYIYTVQNIPNITKDRWLNKLEELLEPCEEGICRLYLNGQDEHTEVITSLLNILDILGMANVKFSGGESCAVHLKCTDRNYILNNFKNYYCEITRDIRRRIDREEQIMRDFFTMKLDDSQRWDFIENYFLGRIY
>NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVDPKTIANRTIKNSSLNYDKLFPISKHSMTDTSQLSSLLQILMNRFSYCDRDSVRSLLERRDRIVTSFRKVLDRELQTKKYLMVGSGCPSIFDNGFTLMRNYGVPYIPASAFKGAFSHYVSQELEENSPLKQNFKFLFGTGEGDDNIKGALIFMDVIPKTYSLGIDIINNHFQPYYSDDKNEKAPNDYYDPVPVQYLVIANGSIFRFSVLEKEKIEDNLRKEVSRELINFLGDFGLGAKTSYGYGLFKEV
>NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MPSLNDWAKERVSSILGKCEKVQKSYKSEIKGLGSMLLQNGLYGTIAYYKVRDKDSSKEILADLSSLLSERMEIADVTEMNPINDLDYIKAQTIVLEAVKWLRRYADILIEGEDNG
>NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKLKAFCLYAESQIHAGTGADVGIVDLPIQRERTTGFPVIQGIKGALRASGLIKDDTVFGSKPSKGGEENTDAGKISFSEAKILLFPVRSAEKMFVWVTCPIVLRRFARSTGKKLEVPDVQNGKVILADQNFNEKSLMLEELELQFEKNPEVASIAAFLSSCAPDSYMATKLKRDLVLVSDDLFAKIVKTMTEVQPRIRIDEKTGIVVSGALWYEEYLPQDSVLYFTARETVYSKGSESKLSELDEKTMIIGGKETTGKGFVFVKEVV
>NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLNAVYFTPEDWICFRESTVFQSGGDAKTGLPKIETFLGAIKTALIKKAGENPLNLSSELKEIVGDSENPGSLRIWGPFIFNQVNSEIRHYFPSPNGIYRVEEGGEFKLMMPHCSVETEINGKTLKLTWIPSSVEGIETFDGSLIEMNEVSNLQRKLPFSILQSKEISQKLYQVESKVGIALERERKNAEESMLYTLSYYRFKPGAGFFVFADEYTAKTISGLSNVFIGGKTRAAEVDVNTIETEIFNVSQSSKTAICLVTPSVFSNGSLPSDMKIAGCDIKSANIQRKIAVSGWDLAKNQPKPIKHYVAPGTVYYLEGTLDNIQNISSESQDFGYGKYFTVDWDYIGRD
>NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNWEKKIIALMHDPLFKAMDIRGHESSSAEILKALGISPDKVKEEDWIASAMDRLAIPWEKSNQVRVSLDDTGGFVHSLSSSKLDVLKHLPNLDSARSQFMANLRVISEGNKKENLFHALWWQLPDMMEGSAFLPADTRIPNHSIVDHLDSTSSLAGTIENGKIKASLISVSVGPVQSFIAAARKTMDLWSGSYLLSLITYKGIEYVGQKYGFDCVIFPSLRNIAFVKKSLSEWGVKFTVDSKVPKPSTRVASLPNRFVAIVPTSEVKETLKNVEKAIKDGWKEIYSVSLKAGKPLDETNLQMQLDTFPEVFTTSQELIEIENAKEIISNLYNDSGIKDEIDNLNSLSTQHGAHKPNAGALYSYSYRLLRSRADARKTLRTFSHFTDNSSVNGKTLQGDQFNGDMKAIFKLKDGEKTDHLNAVNAVKRLYASEINEKFPSVDEFAGKNEQKFIEFTGNMPESYKNSYYAILLMDGDRMGKWIGGEYAPQITEVIAEPLRTAIVSSDLPTKMKDYILMRKTVQPAYHRTVSRTLNIFSSLVQLAVEKHGGELVYSGGDDVLAFLPAVSVLECADEIRRMYSGTGDVELDSPAGKLQFKDEMLWIKGKPHSPMMGWKATMSAGIAVVNKKFPLSQALRIARESEHIAKDGLGRDSFVVSIVRRSGQISRNGAKWSTKDGSFNTIKSLREMIKKMDSSGFGSRSLRKLFGDDLILSNDEYVNKYIPYVLKKAGSRKEDDGSFERMFKNYFRKMIDLEKGIEAITEENSDLFEARKRAVDLLLVQDFLLRGDGR
>NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MQKSTFVCKTITPMLSRSMYSKTGKSWRFELRPQSVKGVMRFWFRALVPCVIDPNWLDGSKKPFAALHYLEGLMFGSQEKKSPFSLTVSYGDDIEESVNTLVESSDRFFRNALFGTYELKGDNPSFSYMMPDQSFTIRIRYSSSILPVQKTVTDSLMSLISNYSGFGAKARDGFGSFAISKAKGVEEDSVGEQYSTSKSLLLKMISELDPDERKFRLINEEPNLYPYDFPTLARSREMNSLIKSRSWKDIIGALTGQRTKDGDPVSKYSRLKLNELRKYGQPGDNLEPLRAAYFERTAPSREFVMRTSIMGLPIIYQRFGEYPGTTGKGTATVSNSNNSSGRKASPIFISVHKALNNSYFARILLMASKISPDRDNNDRPVIYAIVKGEPYPILGNENFEELWNLLKGVIE
>NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein
MHFEGRQGETIINTIICTVGASLRKLCNMTSSGITDRLLNLNDPIGNREFGAEINSLASILSQSVLSSRDYLYFLTSDTEEGKKIGDALKLFFDCSKDMSFKNVSVNAISDLDDSRPDDFQNKGLRNLVKRIAEIYKHHMDNLLINATGGYKAQIALSLAFGMGVKIPVYYRFETFDGVIKLPPMPLSLDVELWLENKGLLDTLEMNSVINEKDLEREYDYRINFSSLPAEIKLLIDREQDSVGHMLSLSPMGEVFVQACRLSLGKLDVEASLKDSSVPIENRLKKSSKEAHSNKMISDNQSFIDKLVSIPFIEEVLVRGSSQKFDRNEFVCKQFGEIIKARYSTRGGTLYMEIRTTARNPYELEKAVEEIKRLLK

Crispr_ID: NC_017934_3

• CRISPR_ID: NC_017934_3
• CRISPR_location: 1714650-1717707
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 45 spacers
• Cas_protein_info: RT,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

Consensus repeat of NC_017934_3

Consensus_repeat	Method
GTTTCCATACCACTATGGTTCTTACGCAAC	CRISPRCasFinder
GTTTCCATACCACTATGGTTCTTACGCAAC	CRT
GTTTCCATACCACTATGGTTCTTACGCAAC	PILER-CR

spacers of NC_017934_3

>3.1|1714680|36|NC_017934|CRISPRCasFinder,CRT
CCGTTGAAGAGTTCAAGGCGCAACTTATGGCCTTGT
>3.2|1714746|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGGATTTACTGATCGAGACGGCAAATCTTAAATTGTGG
>3.3|1714814|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGCGTTGCTCCATCTGAATTATTTGGGCCTGAAGAA
>3.4|1714881|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAGATGGAAGAGACAACTATGACTATTAAAAAATTGCA
>3.5|1714949|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAAACTTGTTTAGTGCCATTATAGCAAGAGCATTGCAA
>3.6|1715017|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGTTTTCGTTTCGATAAGTGGAAAAACAGAGCCAGTTT
>3.7|1715086|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGAACGTAATTGTAAAGTCACAACAGATCAAGCA
>3.8|1715151|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTGCAGGGCGCTTTCTTATTCATATATATGCATATACA
>3.9|1715219|41|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTATCCTAAGTATCGACTTCTGATGGAAAGGTTACAGAAAT
>3.10|1715290|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTAATGAATTTTTCGATGCCGTGAAGTCTTAAAGT
>3.11|1715355|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCCCTGCTTCCCTGAAATTCAATTGGGAAAAAGAA
>3.12|1715420|40|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGGAAGGTTGGCTCTAGCGTATATGTACAGTATGCACGC
>3.13|1715490|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
>3.14|1715557|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
>3.15|1715626|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
>3.16|1715692|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
>3.17|1715759|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
>3.18|1715828|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TACATACCTGTTGGCCATCGCAGAAGCCATTGATACAC
>3.19|1715896|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
>3.20|1715962|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
>3.21|1716029|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAAAAGGAAGTCTCACGGCTGGAATTGGCGAAACGAA
>3.22|1716096|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGAAGGACTTCGAGATAATCGTGGCTAAGAATAGAAA
>3.23|1716164|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAAGTACACTCAAAGGCACTACTTTGCCCTGCTTTTACA
>3.24|1716233|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAATTGCTCTGCTAAGGTAGTAAGGGCCAAGTTAAT
>3.25|1716299|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TAACTGCGGGGAGAGTATAAACGCTCGCTATGAACCCGC
>3.26|1716368|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACAGCGATACTTTTCGAAAGCTATCAGCTGTATTCTGT
>3.27|1716436|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTCGTCCAATGATGGGAGAAAGGAATTCCTTAAGTTT
>3.28|1716504|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACTTTATTTGTCGGATATATCTTAGTGGATTGAATT
>3.29|1716570|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCGGTTTAGAATTTCGTAACAATAGGGGGTGCGTGA
>3.30|1716636|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTCTATGAATGGCTAATGGATAATGTAAGATCAAACGG
>3.31|1716704|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAGACTATCGCGAAAGAGATCGGGAAGGGAATGAGTC
>3.32|1716771|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATGATCGAGAAGCAATACGATTCGTGGCGAGGTCTCGG
>3.33|1716839|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTAATCAATGGTTCAGACGAAGAAATGACACTCCCC
>3.34|1716905|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGCAAGAAAAGAACACACTTGCCAAGAATGTGGAGCAA
>3.35|1716973|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGAGAGACGAGAATGGTCACATCGTCGGCGTGAAA
>3.36|1717038|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCGCCCGGGAGTACGGCCTCAAACTCGAAGGACTGTT
>3.37|1717105|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CCAATGTTCACAGAGAACAAGGGTTCATATGCTCAAA
>3.38|1717172|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCACTTCGAGAGCTCATCCGTACCCAACTTCAAGAAC
>3.39|1717239|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAAGAGTACGCGTCCCCGGTAGTGGCCTTCTCGATTC
>3.40|1717306|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGGTCAAAGACGGGATTCTCGACGCTCTCTCGATC
>3.41|1717372|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATGCAGACACGGCCAACACGGTGATAGGTATTCTCAA
>3.42|1717439|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGAATATAGCGGAAAGTGGAAAACAGAAAGTATTGGTT
>3.43|1717507|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAAAACAAATGATTGACAAACCTAAAAGGAGGTTGGTA
>3.44|1717575|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TATGAAGTGTATAGGAGTAGTAGAATCAGGTCACAGCT
>3.45|1717643|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCACCTACCACCCGGACAACTCCATTTTCCCAACT

CRISPR arrays and Neighbor proteins around NC_017934_3

CRISPR arrays

The CRISPR arrays of NC_017934_3

>merge|NC_017934|3|1714650-1717707|CRISPRCasFinder,CRT,PILER-CR
CAATTCATACCACTATGGTTCTCACGCAACCCGTTGAAGAGTTCAAGGCGCAACTTATGGCCTTGTGTTTCCATACCACTATGGTTCTCACGCAACAGGATTTACTGATCGAGACGGCAAATCTTAAATTGTGGGTTTCCATACCACTATGGTTCTTACGCAACTGGCGTTGCTCCATCTGAATTATTTGGGCCTGAAGAAGTTTCCATACCACTATGGTTCTTACGCAACCAGATGGAAGAGACAACTATGACTATTAAAAAATTGCAGTTTCCATACCACTATGGTTCTTACGCAACAAAACTTGTTTAGTGCCATTATAGCAAGAGCATTGCAAGTTTCCATACCACTATGGTTCTTACGCAACGAGTTTTCGTTTCGATAAGTGGAAAAACAGAGCCAGTTTGTTTCCATACCACTATGGTTCTTACGCAACTGGAACGTAATTGTAAAGTCACAACAGATCAAGCAGTTTCCATACCACTATGGTTCTTACGCAACCTGCAGGGCGCTTTCTTATTCATATATATGCATATACAGTTTCCATACCACTATGGTTCTTACGCAACGTATCCTAAGTATCGACTTCTGATGGAAAGGTTACAGAAATGTTTCCATACCACTATGGTTCTTACGCAACGTAATGAATTTTTCGATGCCGTGAAGTCTTAAAGTGTTTCCATACCACTATGGTTCTTACGCAACGCCCTGCTTCCCTGAAATTCAATTGGGAAAAAGAAGTTTCCATACCACTATGGTTCTTACGCAACAAGGAAGGTTGGCTCTAGCGTATATGTACAGTATGCACGCGTTTCCATACCACTATGGTTCTTACGCAACCATGCATCACAAAAATTTGTGCGCCAACACGTAAAACGTTTCCATACCACTATGGTTCTTACGCAACCATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGATGTTTCCATACCACTATGGTTCTTACGCAACATAAATCATAAGTATAAAAAACGATGAATGGAAAATGTTTCCATACCACTATGGTTCTTACGCAACCATGCATCACAAAAATTTGTGCGCCAACACGTAAAACGTTTCCATACCACTATGGTTCTTACGCAACCATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGATGTTTCCATACCACTATGGTTCTTACGCAACTACATACCTGTTGGCCATCGCAGAAGCCATTGATACACGTTTCCATACCACTATGGTTCTTACGCAACATAAATCATAAGTATAAAAAACGATGAATGGAAAATGTTTCCATACCACTATGGTTCTTACGCAACCATGCATCACAAAAATTTGTGCGCCAACACGTAAAACGTTTCCATACCACTATGGTTCTCACGCAACAAAAAGGAAGTCTCACGGCTGGAATTGGCGAAACGAAGTTTCCATACCACTATGGTTCTTACGCAACGAGAAGGACTTCGAGATAATCGTGGCTAAGAATAGAAAGTTTCCATACCACTATGGTTCTTACGCAACAAAGTACACTCAAAGGCACTACTTTGCCCTGCTTTTACAGTTTCCATACCACTATGGTTCTTACGCAACCAATTGCTCTGCTAAGGTAGTAAGGGCCAAGTTAATGTTTCCATACCACTATGGTTCTTACGCAACTAACTGCGGGGAGAGTATAAACGCTCGCTATGAACCCGCGTTTCCATACCACTATGGTTCTTACGCAACACAGCGATACTTTTCGAAAGCTATCAGCTGTATTCTGTGTTTCCATACCACTATGGTTCTTACGCAACGGTCGTCCAATGATGGGAGAAAGGAATTCCTTAAGTTTGTTTCCATACCACTATGGTTCTTACGCAACACTTTATTTGTCGGATATATCTTAGTGGATTGAATTGTTTCCATACCACTATGGTTCTTACGCAACGCGGTTTAGAATTTCGTAACAATAGGGGGTGCGTGAGTTTCCATACCACTATGGTTCTTACGCAACGTCTATGAATGGCTAATGGATAATGTAAGATCAAACGGGTTTCCATACCACTATGGTTCTTACGCAACCAGACTATCGCGAAAGAGATCGGGAAGGGAATGAGTCGTTTCCATACCACTATGGTTCTTACGCAACATGATCGAGAAGCAATACGATTCGTGGCGAGGTCTCGGGTTTCCATACCACTATGGTTCTTACGCAACCTAATCAATGGTTCAGACGAAGAAATGACACTCCCCGTTTCCATACCACTATGGTTCTTACGCAACGGCAAGAAAAGAACACACTTGCCAAGAATGTGGAGCAAGTTTCCATACCACTATGGTTCTTACGCAACTGAGAGACGAGAATGGTCACATCGTCGGCGTGAAAGTTTCCATACCACTATGGTTCTTACGCAACTCGCCCGGGAGTACGGCCTCAAACTCGAAGGACTGTTGTTTCCATACCACTATGGTTCTTACGCAACCCAATGTTCACAGAGAACAAGGGTTCATATGCTCAAAGTTTCCATACCACTATGGTTCTTACGCAACTCACTTCGAGAGCTCATCCGTACCCAACTTCAAGAACGTTTCCATACCACTATGGTTCTTACGCAACGAAGAGTACGCGTCCCCGGTAGTGGCCTTCTCGATTCGTTTCCATACCACTATGGTTCTTACGCAACAAGGTCAAAGACGGGATTCTCGACGCTCTCTCGATCGTTTCCATACCACTATGGTTCTTACGCAACATGCAGACACGGCCAACACGGTGATAGGTATTCTCAAGTTTCCATACCACTATGGTTCTTACGCAACGGAATATAGCGGAAAGTGGAAAACAGAAAGTATTGGTTGTTTCCATACCACTATGGTTCTTACGCAACAAAAACAAATGATTGACAAACCTAAAAGGAGGTTGGTAGTTTCCATACCACTATGGTTCTTACGCAACTATGAAGTGTATAGGAGTAGTAGAATCAGGTCACAGCTGTTTCCATACCACTATGGTTCTTACGCAACTCACCTACCACCCGGACAACTCCATTTTCCCAACTGTTTCCATACCACTATGGTTCTTACGCAAC

>NC_017934|3|3|1714650-1717707|CRISPRCasFinder
CAATTCATACCACTATGGTTCTCACGCAAC	CCGTTGAAGAGTTCAAGGCGCAACTTATGGCCTTGT
GTTTCCATACCACTATGGTTCTCACGCAAC	AGGATTTACTGATCGAGACGGCAAATCTTAAATTGTGG
GTTTCCATACCACTATGGTTCTTACGCAAC	TGGCGTTGCTCCATCTGAATTATTTGGGCCTGAAGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGATGGAAGAGACAACTATGACTATTAAAAAATTGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAACTTGTTTAGTGCCATTATAGCAAGAGCATTGCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGTTTTCGTTTCGATAAGTGGAAAAACAGAGCCAGTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGGAACGTAATTGTAAAGTCACAACAGATCAAGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGGGCGCTTTCTTATTCATATATATGCATATACA
GTTTCCATACCACTATGGTTCTTACGCAAC	GTATCCTAAGTATCGACTTCTGATGGAAAGGTTACAGAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GTAATGAATTTTTCGATGCCGTGAAGTCTTAAAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCCCTGCTTCCCTGAAATTCAATTGGGAAAAAGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGGAAGGTTGGCTCTAGCGTATATGTACAGTATGCACGC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TACATACCTGTTGGCCATCGCAGAAGCCATTGATACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTCACGCAAC	AAAAAGGAAGTCTCACGGCTGGAATTGGCGAAACGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGAAGGACTTCGAGATAATCGTGGCTAAGAATAGAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAGTACACTCAAAGGCACTACTTTGCCCTGCTTTTACA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAATTGCTCTGCTAAGGTAGTAAGGGCCAAGTTAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TAACTGCGGGGAGAGTATAAACGCTCGCTATGAACCCGC
GTTTCCATACCACTATGGTTCTTACGCAAC	ACAGCGATACTTTTCGAAAGCTATCAGCTGTATTCTGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GGTCGTCCAATGATGGGAGAAAGGAATTCCTTAAGTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTTTATTTGTCGGATATATCTTAGTGGATTGAATT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCGGTTTAGAATTTCGTAACAATAGGGGGTGCGTGA
GTTTCCATACCACTATGGTTCTTACGCAAC	GTCTATGAATGGCTAATGGATAATGTAAGATCAAACGG
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGACTATCGCGAAAGAGATCGGGAAGGGAATGAGTC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGATCGAGAAGCAATACGATTCGTGGCGAGGTCTCGG
GTTTCCATACCACTATGGTTCTTACGCAAC	CTAATCAATGGTTCAGACGAAGAAATGACACTCCCC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCAAGAAAAGAACACACTTGCCAAGAATGTGGAGCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGAGACGAGAATGGTCACATCGTCGGCGTGAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCGCCCGGGAGTACGGCCTCAAACTCGAAGGACTGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCAATGTTCACAGAGAACAAGGGTTCATATGCTCAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACTTCGAGAGCTCATCCGTACCCAACTTCAAGAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAAGAGTACGCGTCCCCGGTAGTGGCCTTCTCGATTC
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGGTCAAAGACGGGATTCTCGACGCTCTCTCGATC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGCAGACACGGCCAACACGGTGATAGGTATTCTCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GGAATATAGCGGAAAGTGGAAAACAGAAAGTATTGGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAAACAAATGATTGACAAACCTAAAAGGAGGTTGGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	TATGAAGTGTATAGGAGTAGTAGAATCAGGTCACAGCT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC

>NC_017934|3|2|1714650-1717707|CRT
CAATTCATACCACTATGGTTCTCACGCAAC	CCGTTGAAGAGTTCAAGGCGCAACTTATGGCCTTGT
GTTTCCATACCACTATGGTTCTCACGCAAC	AGGATTTACTGATCGAGACGGCAAATCTTAAATTGTGG
GTTTCCATACCACTATGGTTCTTACGCAAC	TGGCGTTGCTCCATCTGAATTATTTGGGCCTGAAGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGATGGAAGAGACAACTATGACTATTAAAAAATTGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAACTTGTTTAGTGCCATTATAGCAAGAGCATTGCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGTTTTCGTTTCGATAAGTGGAAAAACAGAGCCAGTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGGAACGTAATTGTAAAGTCACAACAGATCAAGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGGGCGCTTTCTTATTCATATATATGCATATACA
GTTTCCATACCACTATGGTTCTTACGCAAC	GTATCCTAAGTATCGACTTCTGATGGAAAGGTTACAGAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GTAATGAATTTTTCGATGCCGTGAAGTCTTAAAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCCCTGCTTCCCTGAAATTCAATTGGGAAAAAGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGGAAGGTTGGCTCTAGCGTATATGTACAGTATGCACGC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TACATACCTGTTGGCCATCGCAGAAGCCATTGATACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTCACGCAAC	AAAAAGGAAGTCTCACGGCTGGAATTGGCGAAACGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGAAGGACTTCGAGATAATCGTGGCTAAGAATAGAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAGTACACTCAAAGGCACTACTTTGCCCTGCTTTTACA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAATTGCTCTGCTAAGGTAGTAAGGGCCAAGTTAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TAACTGCGGGGAGAGTATAAACGCTCGCTATGAACCCGC
GTTTCCATACCACTATGGTTCTTACGCAAC	ACAGCGATACTTTTCGAAAGCTATCAGCTGTATTCTGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GGTCGTCCAATGATGGGAGAAAGGAATTCCTTAAGTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTTTATTTGTCGGATATATCTTAGTGGATTGAATT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCGGTTTAGAATTTCGTAACAATAGGGGGTGCGTGA
GTTTCCATACCACTATGGTTCTTACGCAAC	GTCTATGAATGGCTAATGGATAATGTAAGATCAAACGG
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGACTATCGCGAAAGAGATCGGGAAGGGAATGAGTC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGATCGAGAAGCAATACGATTCGTGGCGAGGTCTCGG
GTTTCCATACCACTATGGTTCTTACGCAAC	CTAATCAATGGTTCAGACGAAGAAATGACACTCCCC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCAAGAAAAGAACACACTTGCCAAGAATGTGGAGCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGAGACGAGAATGGTCACATCGTCGGCGTGAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCGCCCGGGAGTACGGCCTCAAACTCGAAGGACTGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCAATGTTCACAGAGAACAAGGGTTCATATGCTCAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACTTCGAGAGCTCATCCGTACCCAACTTCAAGAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAAGAGTACGCGTCCCCGGTAGTGGCCTTCTCGATTC
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGGTCAAAGACGGGATTCTCGACGCTCTCTCGATC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGCAGACACGGCCAACACGGTGATAGGTATTCTCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GGAATATAGCGGAAAGTGGAAAACAGAAAGTATTGGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAAACAAATGATTGACAAACCTAAAAGGAGGTTGGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	TATGAAGTGTATAGGAGTAGTAGAATCAGGTCACAGCT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC

>NC_017934|3|2|1714716-1717707|PILER-CR
GTTTCCATACCACTATGGTTCTCACGCAAC	AGGATTTACTGATCGAGACGGCAAATCTTAAATTGTGG
GTTTCCATACCACTATGGTTCTTACGCAAC	TGGCGTTGCTCCATCTGAATTATTTGGGCCTGAAGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGATGGAAGAGACAACTATGACTATTAAAAAATTGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAACTTGTTTAGTGCCATTATAGCAAGAGCATTGCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGTTTTCGTTTCGATAAGTGGAAAAACAGAGCCAGTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGGAACGTAATTGTAAAGTCACAACAGATCAAGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGGGCGCTTTCTTATTCATATATATGCATATACA
GTTTCCATACCACTATGGTTCTTACGCAAC	GTATCCTAAGTATCGACTTCTGATGGAAAGGTTACAGAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GTAATGAATTTTTCGATGCCGTGAAGTCTTAAAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCCCTGCTTCCCTGAAATTCAATTGGGAAAAAGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGGAAGGTTGGCTCTAGCGTATATGTACAGTATGCACGC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATTCATGTTGGCGTTTGCGGTATCATACGCCGCGGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TACATACCTGTTGGCCATCGCAGAAGCCATTGATACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATAAATCATAAGTATAAAAAACGATGAATGGAAAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CATGCATCACAAAAATTTGTGCGCCAACACGTAAAAC
GTTTCCATACCACTATGGTTCTCACGCAAC	AAAAAGGAAGTCTCACGGCTGGAATTGGCGAAACGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGAAGGACTTCGAGATAATCGTGGCTAAGAATAGAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAGTACACTCAAAGGCACTACTTTGCCCTGCTTTTACA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAATTGCTCTGCTAAGGTAGTAAGGGCCAAGTTAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TAACTGCGGGGAGAGTATAAACGCTCGCTATGAACCCGC
GTTTCCATACCACTATGGTTCTTACGCAAC	ACAGCGATACTTTTCGAAAGCTATCAGCTGTATTCTGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GGTCGTCCAATGATGGGAGAAAGGAATTCCTTAAGTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTTTATTTGTCGGATATATCTTAGTGGATTGAATT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCGGTTTAGAATTTCGTAACAATAGGGGGTGCGTGA
GTTTCCATACCACTATGGTTCTTACGCAAC	GTCTATGAATGGCTAATGGATAATGTAAGATCAAACGG
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGACTATCGCGAAAGAGATCGGGAAGGGAATGAGTC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGATCGAGAAGCAATACGATTCGTGGCGAGGTCTCGG
GTTTCCATACCACTATGGTTCTTACGCAAC	CTAATCAATGGTTCAGACGAAGAAATGACACTCCCC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCAAGAAAAGAACACACTTGCCAAGAATGTGGAGCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGAGACGAGAATGGTCACATCGTCGGCGTGAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCGCCCGGGAGTACGGCCTCAAACTCGAAGGACTGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCAATGTTCACAGAGAACAAGGGTTCATATGCTCAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACTTCGAGAGCTCATCCGTACCCAACTTCAAGAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAAGAGTACGCGTCCCCGGTAGTGGCCTTCTCGATTC
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGGTCAAAGACGGGATTCTCGACGCTCTCTCGATC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGCAGACACGGCCAACACGGTGATAGGTATTCTCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	GGAATATAGCGGAAAGTGGAAAACAGAAAGTATTGGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAAACAAATGATTGACAAACCTAAAAGGAGGTTGGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	TATGAAGTGTATAGGAGTAGTAGAATCAGGTCACAGCT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731170.1|1722758_1725854_-|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223588
NC_017934.1|WP_006489374.1|1698529_1699408_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl|CDD|275209
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|213662
NC_017934.1|WP_014731165.1|1707259_1709578_-|hypothetical-protein	unknown	unknown	gnl|CDD|372045
NC_017934.1|WP_006489376.1|1696649_1697678_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_017934.1|WP_006489375.1|1697693_1698518_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl|CDD|275209
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_006489367.1|1701776_1702052_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl|CDD|198034
NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_014731169.1|1719482_1722710_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_006489366.1|1705019_1706423_+|DUF1254-domain-containing-protein	unknown	unknown	gnl|CDD|227659
NC_017934.1|WP_014731163.1|1695004_1696645_-|DUF4185-domain-containing-protein	unknown	unknown	gnl|CDD|379383
NC_017934.1|WP_006489371.1|1699463_1700708_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270451

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	3.9e-49	161.8	0.0
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2e-89	295.4	0.0
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	9.1e-70	230.2	0.1
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.7e-39	130.6	0.0
NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.4e-29	97.4	0.0
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	9.7e-51	168.1	0.0
NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	1.3e-48	160.1	0.0
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	4.9e-48	158.7	0.1
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.6e-38	126.5	0.0
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.8e-18	60.8	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731170.1|1722758_1725854_-|DEAD/DEAH-box-helicase	gnl|CDD|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	2.60273e-75
NC_017934.1|WP_006489374.1|1698529_1699408_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	9.19581e-81
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.25246e-28
NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase	gnl|CDD|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.44764e-178
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.1734e-41
NC_017934.1|WP_014731165.1|1707259_1709578_-|hypothetical-protein	gnl|CDD|372045	pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding. This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.	0.00143519
NC_017934.1|WP_006489376.1|1696649_1697678_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.56325e-101
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.28536e-17
NC_017934.1|WP_006489375.1|1697693_1698518_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.88431e-85
NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase	gnl|CDD|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.55902e-179
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.35605e-81
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.41289e-68
NC_017934.1|WP_006489367.1|1701776_1702052_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl|CDD|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	8.98854e-06
NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.81609e-25
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.5233e-44
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.73895e-38
NC_017934.1|WP_006489366.1|1705019_1706423_+|DUF1254-domain-containing-protein	gnl|CDD|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	8.07043e-70
NC_017934.1|WP_014731163.1|1695004_1696645_-|DUF4185-domain-containing-protein	gnl|CDD|379383	pfam13810, DUF4185, Domain of unknown function (DUF4185).	3.2743e-72
NC_017934.1|WP_006489371.1|1699463_1700708_-|ABC-transporter-substrate-binding-protein	gnl|CDD|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.54975e-76

Protein sequences

>NC_017934.1|WP_014731166.1|1710879_1712115_-|group-II-intron-reverse-transcriptase/maturase
MRSYEIPKKVVLEAFKKVKENRGAEGIDEVSLEEFEADLDNNLYKIWNRMTSGSYFPPPVKAIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVTRQRCWRYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFIQANGRVEERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLESLKERMEECKLKLHPEKTRIVYCKDDKRKGEYPNTSFDFLGYTFRVRSCKARNGRIFYSFTPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLSQLNKALVQWVRNKYKKRRGRTKAGKWLETLARREPRLFVHWTMGIFYTAG
>NC_017934.1|WP_014731165.1|1707259_1709578_-|hypothetical-protein
MKRFMYVVSIVLTIIISLSSCVKPVPPVDTTDLKGVVMTDGEHDGFVRLLSTSDTLIGEESVYRLGGFFYKSDVLLPKSFLIEASITFGEMELDYYYEVSDLGPDEIIYIGPISTLIHKYHLKHPEKSLNDVRGEVLIFLSIDPGHSDYTIAMNRGKFSITNFMNSALAHGGFDSFIDFLVDDLSVGGGPHDFGDYEEDPEASIFESLIGELNENLESSAIDYATGWVFDMIGGGNGDNPEADIEKLLELQLEMLKDIKTELDQIEEELKEAVNEIISAVDKSTYNTAVTVIADEVGTIEAKYQNIVYYAALDPDKKYESDIELLSRQIKDEIPNSFMTIRDVLEGRAGAESLFSLWSRIAFKDASDISEYVAMISSQFSYYFALQLKAINLMVEVYHAEDPANVGMAASCFNDWLNNLRDELDLFNTFNPISELATSTTFPTINTVDDWFAWPDISSMFLVGDRIVVTDGGWVQAPTEDPNIEIYSVDSMTLQDRHKYSQISLSYRATAVDDTNLYLLYHLQNNNYRLYKSEVDASEEDWTYSDFTLEHGCLQMAANSQWIFILGGDRDGFYLNIRDKATLAHHKTVQLTGSSGYSSQSVAMTSDGDYAYFLFSNGNKLLSVDLKTLEILDTINFGSTISDFPNMIVRDDILCVSTAYHDVFFVDTSDKADLNLFKTIEFDPNQADQCSPLNVNFAGNFTYAAGAMPWVIYVVYDNPRNLTGPMFKENMSAQSLLNWQPLLMNGEDELYILGNSNTLQLWKKYVVVDIPLY
>NC_017934.1|WP_006489366.1|1705019_1706423_+|DUF1254-domain-containing-protein
MLCRKHIALLIITLSFLSLLLSSENEFTTDCDEAREIAKQAYIFAYPMLEDFKTMTIQAIGPGLFNKFYNSRKLRGPDYKEVVRPNNDNIYSALWLDLRSEPVVVSVPAVEDRYYSFQMIDMYTHNFAYVGTRATGTGARTFVISGAFWQGSVPTGVDDVFRSEGNFVLCLVRIAVDMEVEGDLDKVLEIQKGHEIQPLSSYLGEEAPPAADPTIFPTYDTTKAESVEFISYFNFLLGQLEVHPSEKELIEQFGKIGIGPNLPFDFNSMPLGIREAVEEGIKGALETIRNPGEMVGISKNGWNLTKRIFGSREEMQGKYEVRAAAAYLGLYGNSLEEAYCPNGLVDGDGDVYDGSKFKYVLSFDSDELPPVEPKGFWSITMYGEDQFLVANEINRYSIGDRTNMKYGEDGSLVIYIQHESPGADKESNWLPAPDGIFSISMRIYLPSEVALNPLYCPPPVMKSGMAN
>NC_017934.1|WP_041928449.1|1702956_1704192_-|group-II-intron-reverse-transcriptase/maturase
MRSYEIPKKVVLEAFKKVKENRGAEGIDEVSLKEFEADLDNNLYKIWNRMSSGSYFPPPVKAIEIEKKSGGKRVLGIPTVGDRVAQMVAKIYLNPLVDPYFHKDSYGYREGKSAIDALEVTRQRCWQYDWVLEFDIKGLFDNIDHELLMRAVKKHVKIPWLILYIERWLKAPFMQANGRVEERSKGTPQGGVISPVLANLFMHYAFDKWMERTHPDKPFARYADDGVIHCRTLEEARLLLESLKERLEECKLELHPEKTRIVYCKDDKRKDEYPNTSFDFLGYTFRVRSCKARNGRIFYSFTPAVSEQAKKAMRQKIRRMRLQTKSYLSIEELSERINPVIRGWINYYGHFRRFEMYTVLSRLNKALVQWVRNKYKKRRGRTKAGKWLETLARREPRLFVHWTMGIFYTAG
>NC_017934.1|WP_006489367.1|1701776_1702052_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MSTRLLRPTERGQITIPKEARDKLKITPDSRFKVSVEGDKIIYQLVSPFDMIVKEFQKEAEARGYTKEELENELEKVRKKLFKEIYDESDD
>NC_017934.1|WP_006489371.1|1699463_1700708_-|ABC-transporter-substrate-binding-protein
MKKLLLLFLVSAFLVVTALSAEITFWKFTDTYADPTIQRFVDLWNEENPDKKVVFETFPWGDYTGTKLTTAFATGEGPDVFFISPGDFLRYVNTGIALPLSKYLTEDIIADFLPETIEAVTVGGEIYALPLEMEPVAIFYNKAAFEEKGISQPQDWAELKEAAAKLKTADRYGIIVEVAPGYYQNFTWYPFLWTAGGDVVDENWEKSAFESEGAIAALDLWGSFVKEGLAPSSLPAGANDIGMFGNGLADMIVCGFWGVKQLQTQFPEFDFGVFPIPPYEKGGESISVYGGWKMMLNAKGKNTDIAAEFARWLVAEQIDFPLDWCTVTNSKFSPRYSVLEAGNEFYNTPPNDVFLEILKTSKSEPTFTPEMVKAVSDAIQAVMFAGMDPKAAAKGASAAINAYLSRYTGGVPGK
>NC_017934.1|WP_006489374.1|1698529_1699408_-|sugar-ABC-transporter-permease
MNRKTRERLVGYSFIAPDITGLIIFAMVPAIVALVISFFSWNGLSDMLFVGLDNYRTMFQDPQWRNSIFVTLKYSVFFVPMNFLFALLLAMLVQKPGPGIGLFRAIFFAPTAMSMVAVSFVWKYMFQPYGFVNYFLSFFGITRQPLLGSMSQALYCITVVSLYMSVGYYMVIFLAGLNEISNEYYEAAEIDGASGFQKFLYITLPLLKPTTAFVLVMTFLQSFQVFDQIYILTGGGPFYSTSTAAFYIYYNAFQMYQFGYSSAQAFTLFAILLVVSYFMLRALRGGNVSTGS
>NC_017934.1|WP_006489375.1|1697693_1698518_-|carbohydrate-ABC-transporter-permease
MKTRIVKGILRYVLLVALAMFFLFPIYWMFVSSLKSPSEIFAFPPKLIPENPVWSNYSKVFSQVPFARYMLNTFFVASVVTIVALLLHSMAAYSLARLRYPGRNVLFILVISTLMIPFSAILIPLFLIVKNFGWIDSYRGLIIPAIPHAFGIFFLRQFYLGFPRELEEAAIIDGSGLVRVFFKIVLPLSKPVLSALAVFFFLANWNSFMWPLVIINSPEMRTVQLGIAQYGGEYNNPWAIQLAACTVALIPTLIVFVILQKQLMQSIKMTGMKL
>NC_017934.1|WP_006489376.1|1696649_1697678_-|LacI-family-DNA-binding-transcriptional-regulator
MAQRVTIKSIAEELGVSVASVSRALNGKGEVGPALEKRILQKADELGYIANYSARSLKHQKTNLIGVLVPDTFNPFFAHFVTKIEELLYDSGYEILLSTTRESLEKEREYLEIMVSKNVTGILAAPVDRTGNISIYKRVKAMDIPIVFFDRNVEGLDLSRVNVDNRSAVYKIVRYLYRKGHRRIAFVESVPNTSMGEERLAGYREAIKDFGLSEEFSLERFGLFIENDVKSQAAEILSHRPTALITGNLVITKAFLQALKTLRIKIPQELSLVSFDDIEWLEVTSPPITAFRQPIESLAMNAVALLKREMKNNESNSQIVVVEGELIIRDSVYDLSSEKQGG
>NC_017934.1|WP_014731163.1|1695004_1696645_-|DUF4185-domain-containing-protein
MIRVALLLLSVVLISSFLLATSLKDVTELEMVAKLTGPNAINNTLKYDVFGTDLGHSFNDGEITYFVFGDTFGINKTNWRKNVMAFTTDQDPSDGIIFEGFITGDGASTYAFSDNTVRLNVVKGADLWSSVDLAPKLLKSQLPGEWSIETRIESNSAPVGATNLCGLLFFSGVQNWIMWGHLGNRTMEASGIIGGKFVKIAEVASLYPYLRIENRLFSNTYVFSYSQDGENWIEAGTFDDKEGFLNSARYGIGAKEWGTSDYEVIFTDIAENSVNFSARELREAFYWGGPGESSGAAKELIHSTPGDITAIPTNGVAVNSRLYLHYMMVNYWGEPGRWNTSYSGLAVSKNGGRTWDVLDSVKWGSESNFAQVGIAKASQWPKIPDGCDVNSDTLFFFGIPSGRFGGVKLMKVDGEEIEKIDAYRYFSGLDNSGIPQWSSKEEDAEIIIEAPVGECSAMYNHFLGKWIITYLNEQSHDLEIRESPNPWGPWSKPHQLVSSREYSGLYGAFLNPLFVENDGEYIYFTMSLWTPYNVYLMKVRLIKQEV
>NC_017934.1|WP_014731168.1|1718454_1719504_-|CRISPR-associated-protein
MGRQRRVITNVGGTIWFNLKKMYASPDSELSSSAIVSYLRKMSEDELKKISPEINGLGTFGVNKDDLLIFIATNTDVSKACMEALTELYRSRGINVITRVVEGLTDDSNTAFKKGIADYVDLIIGLFDNGEQWSYDNYFNATSGYRSLIPYTTIVAAVFDSRVFYLYENSPHLLELPPFPINFDFEIMEKHSSFFEKVDNDCVPVEEARKEFGNELFTKIVPQILLEEDGLVYLSNFGKILWGRYTVSNPEIYLSDSAQKVIDKDPVYLEYIKKMLRNEAEAEHQLHEYVGDAQCYKFPAKGVRVFYIRHGEEPLKIATILRNHDEYERYIRTEQHEAGLNYTKTRISI
>NC_017934.1|WP_014731169.1|1719482_1722710_-|hypothetical-protein
MSEKLEKEEKFLLDRTSHEKAIAAFKEEAERKTGIIQWYIMREENEEERVRLEIVPEKTGMRHVWTQTYKKRSSDSKDRIEREYSLDPTEVDLKNLETLPFVVKIRHYLEPKNKGIKEVILDEFLEKWKCDCQYLVEIEMNDGKEDRSIISEEASSWKFLKDLTGLTEEESKKYENKTLAKHHEESSAFKIIQYVENRLKPEQVVVALQGNSFFNKLGNLRNEYEREGFRKEKEYSVLRYKKKYNDDEELSCDLNEVLKNPCSYNDIRFLAAETDSIQHILNTGYSISDVEYIVFPDRPEGFSREDEPAIYGFLKALTENAFSKYGIDVHKRPMYYTGDNIESLSRAFTEIWKILDRIREEYPNKEILIDVTGGQKYPGIMASLYCIFNNLPFFYIFEGEVSLAKFPPVPASWDFGAIDEALAAFNSILIRNTTHSFERNHLKYSEYCSLPETFRNLYTASSNEDYLTSSLPLNVIESKYRKARGLPFGYGEDFLKLLDNDYSCTENYKNYLRKMIREVWSLQWIGDQIPETVEHSQRHSKRLMEFTVNLINTIGEENFLNGIPKQLRNEFYFVLAIAMNVHDLGHTKLTYELGDGRILPLDSLPCVVRDLHHELSYQMLEDDDRFRLFDDKQNSFDTDSCNKNTWDNIKTAVKLVTRYHREYMPITGKPGKLKDIVRMLSMEPEPLDKVVAASFADENWQKLTIMAARWLKFIDGTDVQSDRTVEPNYFKTRVLRTITEIEALAVELESNTEISPFIRNEVSDLVSEVGKLRASFEASEYKSMNRDLAISISNKASELEKNTLYPMIRKRIDECKGTITMPNWLKLLSKISFKAVQFPHFEKHNMVNYVYPRFFMEKSLFGNTDGTLRLSINIERESKNDMNSLIRIIDSVKKDIVKEFVRAGLNQFAIKTIKMEVTPLTEKILLTPLGTSPGVLYTLIKRLNPDRVIVITSQAGKDNIPEICMKAGFDIEKISTYLFNDPFTGFEEVQDIMRRMSSDFPVDIRSRITVNLAGGTSFLQYVTGEFAEVLESKMLDVTRVFAVDRRGIDAQKKEPYVVGDVVELPESKSWADKEE
>NC_017934.1|WP_014731170.1|1722758_1725854_-|DEAD/DEAH-box-helicase
MNELEPLKTLLSSRVKHATTLGAKTIVLKNAKKETLKCISEGEFKTISNDVNLDFKWYQTIKSLKGLLSVADHFSDSPVVITEWLYVVIKKYAPLFESYFGKVVAVDCGERASIDTGENISDELMPLFDIDGQFISVKDFPETETIPLFERITPIEVNTLDQLLNHTAGKKCTGIHLDKNLESFLIEAGVSLVSSSSNHEVIIVSSPAESVQSEVDREVSMLRAIGREVEVIDFTGYCPGEEARSIDLKNELKEHFGFDSFKEYEVYGKTGNYLVSQEELIRYLIDQNYRQDPSDLFFVASTGSGKSLIYQLTAKILKRDLDRLTVVITPLKALMEDQVNGLIERYFENGAAFLNSDLSFDEKSELTQRVRKGEITILYVSPETFVGNSLSSIIGERSIGLLVVDEAHLVTTWGKTFRVDYGYLGEDLRFLRSRLSFPVMATTATAISGGELNTISEISKLLCLKNPKTVMTNVRRDNIKFKIDSFELNQHSKDCRTAQKLSDSIDYAIDLVESGKKSIIYCPFVGQAHNIYNAIADLEECRNKVGRYTGPTETQERRLTQELFRKGIYRTVIATKAFGMGVDIPDIDEVFHHSVPSIMADYVQEIGRAGRDGRPSVASTHFHTKDLSDSLKLSKISVPEQWKMRHIMEHIGTLIRQSKNGEIVLSLDDIRYLLITGKDKYNEETIRDKARVAIFLIQKDLENKTGKQILIRKGETYQYLYFTASNDDAEELMKSFPEISRESAGYSRKGFFHNEEIRSVGAVYKIDISALWARLYRDRNLRKLVWQFMRFPSKILGKPVIPKIAVEMSVIKDMDSIKQQLTRFIEILGEFALDSARKQMDEKSLFDGIISKVKSASLLTGVQDLDIKIRNIVKNNFVSYNGDRFQTGLFKCRGEIGNYIYTVQNIPNITKDRWLNKLEELLEPCEEGICRLYLNGQDEHTEVITSLLNILDILGMANVKFSGGESCAVHLKCTDRNYILNNFKNYYCEITRDIRRRIDREEQIMRDFFTMKLDDSQRWDFIENYFLGRIY
>NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVDPKTIANRTIKNSSLNYDKLFPISKHSMTDTSQLSSLLQILMNRFSYCDRDSVRSLLERRDRIVTSFRKVLDRELQTKKYLMVGSGCPSIFDNGFTLMRNYGVPYIPASAFKGAFSHYVSQELEENSPLKQNFKFLFGTGEGDDNIKGALIFMDVIPKTYSLGIDIINNHFQPYYSDDKNEKAPNDYYDPVPVQYLVIANGSIFRFSVLEKEKIEDNLRKEVSRELINFLGDFGLGAKTSYGYGLFKEV
>NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MPSLNDWAKERVSSILGKCEKVQKSYKSEIKGLGSMLLQNGLYGTIAYYKVRDKDSSKEILADLSSLLSERMEIADVTEMNPINDLDYIKAQTIVLEAVKWLRRYADILIEGEDNG
>NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKLKAFCLYAESQIHAGTGADVGIVDLPIQRERTTGFPVIQGIKGALRASGLIKDDTVFGSKPSKGGEENTDAGKISFSEAKILLFPVRSAEKMFVWVTCPIVLRRFARSTGKKLEVPDVQNGKVILADQNFNEKSLMLEELELQFEKNPEVASIAAFLSSCAPDSYMATKLKRDLVLVSDDLFAKIVKTMTEVQPRIRIDEKTGIVVSGALWYEEYLPQDSVLYFTARETVYSKGSESKLSELDEKTMIIGGKETTGKGFVFVKEVV
>NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLNAVYFTPEDWICFRESTVFQSGGDAKTGLPKIETFLGAIKTALIKKAGENPLNLSSELKEIVGDSENPGSLRIWGPFIFNQVNSEIRHYFPSPNGIYRVEEGGEFKLMMPHCSVETEINGKTLKLTWIPSSVEGIETFDGSLIEMNEVSNLQRKLPFSILQSKEISQKLYQVESKVGIALERERKNAEESMLYTLSYYRFKPGAGFFVFADEYTAKTISGLSNVFIGGKTRAAEVDVNTIETEIFNVSQSSKTAICLVTPSVFSNGSLPSDMKIAGCDIKSANIQRKIAVSGWDLAKNQPKPIKHYVAPGTVYYLEGTLDNIQNISSESQDFGYGKYFTVDWDYIGRD
>NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNWEKKIIALMHDPLFKAMDIRGHESSSAEILKALGISPDKVKEEDWIASAMDRLAIPWEKSNQVRVSLDDTGGFVHSLSSSKLDVLKHLPNLDSARSQFMANLRVISEGNKKENLFHALWWQLPDMMEGSAFLPADTRIPNHSIVDHLDSTSSLAGTIENGKIKASLISVSVGPVQSFIAAARKTMDLWSGSYLLSLITYKGIEYVGQKYGFDCVIFPSLRNIAFVKKSLSEWGVKFTVDSKVPKPSTRVASLPNRFVAIVPTSEVKETLKNVEKAIKDGWKEIYSVSLKAGKPLDETNLQMQLDTFPEVFTTSQELIEIENAKEIISNLYNDSGIKDEIDNLNSLSTQHGAHKPNAGALYSYSYRLLRSRADARKTLRTFSHFTDNSSVNGKTLQGDQFNGDMKAIFKLKDGEKTDHLNAVNAVKRLYASEINEKFPSVDEFAGKNEQKFIEFTGNMPESYKNSYYAILLMDGDRMGKWIGGEYAPQITEVIAEPLRTAIVSSDLPTKMKDYILMRKTVQPAYHRTVSRTLNIFSSLVQLAVEKHGGELVYSGGDDVLAFLPAVSVLECADEIRRMYSGTGDVELDSPAGKLQFKDEMLWIKGKPHSPMMGWKATMSAGIAVVNKKFPLSQALRIARESEHIAKDGLGRDSFVVSIVRRSGQISRNGAKWSTKDGSFNTIKSLREMIKKMDSSGFGSRSLRKLFGDDLILSNDEYVNKYIPYVLKKAGSRKEDDGSFERMFKNYFRKMIDLEKGIEAITEENSDLFEARKRAVDLLLVQDFLLRGDGR
>NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MQKSTFVCKTITPMLSRSMYSKTGKSWRFELRPQSVKGVMRFWFRALVPCVIDPNWLDGSKKPFAALHYLEGLMFGSQEKKSPFSLTVSYGDDIEESVNTLVESSDRFFRNALFGTYELKGDNPSFSYMMPDQSFTIRIRYSSSILPVQKTVTDSLMSLISNYSGFGAKARDGFGSFAISKAKGVEEDSVGEQYSTSKSLLLKMISELDPDERKFRLINEEPNLYPYDFPTLARSREMNSLIKSRSWKDIIGALTGQRTKDGDPVSKYSRLKLNELRKYGQPGDNLEPLRAAYFERTAPSREFVMRTSIMGLPIIYQRFGEYPGTTGKGTATVSNSNNSSGRKASPIFISVHKALNNSYFARILLMASKISPDRDNNDRPVIYAIVKGEPYPILGNENFEELWNLLKGVIE
>NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein
MHFEGRQGETIINTIICTVGASLRKLCNMTSSGITDRLLNLNDPIGNREFGAEINSLASILSQSVLSSRDYLYFLTSDTEEGKKIGDALKLFFDCSKDMSFKNVSVNAISDLDDSRPDDFQNKGLRNLVKRIAEIYKHHMDNLLINATGGYKAQIALSLAFGMGVKIPVYYRFETFDGVIKLPPMPLSLDVELWLENKGLLDTLEMNSVINEKDLEREYDYRINFSSLPAEIKLLIDREQDSVGHMLSLSPMGEVFVQACRLSLGKLDVEASLKDSSVPIENRLKKSSKEAHSNKMISDNQSFIDKLVSIPFIEEVLVRGSSQKFDRNEFVCKQFGEIIKARYSTRGGTLYMEIRTTARNPYELEKAVEEIKRLLK

Crispr_ID: NC_017934_4

• CRISPR_ID: NC_017934_4
• CRISPR_location: 1737305-1737470
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: cas2,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas4,cas3,cas5,cas7,cas8b1

Consensus repeat of NC_017934_4

Consensus_repeat	Method
GTTTCCATACCACTATGGTTCTTACGCAAC	CRISPRCasFinder

spacers of NC_017934_4

>4.1|1737335|38|NC_017934|CRISPRCasFinder
GGTGATGAAATGAAGATCTCCACACGGAAGATGACCTA
>4.2|1737403|37|NC_017934|CRISPRCasFinder
GGGAACAGGTGGCAAAGATGACTCCGGAGCAGATCAA

CRISPR arrays and Neighbor proteins around NC_017934_4

CRISPR arrays

The CRISPR arrays of NC_017934_4

>merge|NC_017934|4|1737305-1737470|CRISPRCasFinder
CAATTCATACCACTATGGTTCTTACGCAACGGTGATGAAATGAAGATCTCCACACGGAAGATGACCTAGTTTCCATACCACTATGGTTCTTACGCAACGGGAACAGGTGGCAAAGATGACTCCGGAGCAGATCAAGTTTCCATACCACTATGGTTCATACAAGAGC

>NC_017934|4|4|1737305-1737470|CRISPRCasFinder
CAATTCATACCACTATGGTTCTTACGCAAC	GGTGATGAAATGAAGATCTCCACACGGAAGATGACCTA
GTTTCCATACCACTATGGTTCTTACGCAAC	GGGAACAGGTGGCAAAGATGACTCCGGAGCAGATCAA
GTTTCCATACCACTATGGTTCATACAAGAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|213662
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	unknown	unknown	gnl|CDD|376386
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	unknown	unknown	gnl|CDD|394873
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	unknown	unknown	gnl|CDD|373093
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1e-117	387.6	1.4
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.7e-39	130.6	0.0
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	6.8e-56	184.3	0.0
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	4.9e-48	158.7	0.1
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	7e-42	138.0	0.2
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.8e-18	60.8	0.1
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2e-89	295.4	0.0
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	9.1e-70	230.2	0.1
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5e-29	95.1	1.3
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	1.1e-153	507.1	2.6
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	9.7e-51	168.1	0.0
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	5.4e-21	69.9	0.0
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.6e-38	126.5	0.0
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	3.8e-72	238.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.86001e-139
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.25246e-28
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	2.31508e-57
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.1734e-41
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.1585e-47
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.28536e-17
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.35605e-81
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.41289e-68
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.20607e-65
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	gnl|CDD|376386	pfam00771, FHIPEP, FHIPEP family.	0.00206316
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.5233e-44
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.0725e-18
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.73895e-38
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	gnl|CDD|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	1.3522e-17
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	gnl|CDD|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	1.96283e-30
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40039e-29

Protein sequences

>NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein
MSLPYKLFIGIIALAGVLGILGLISGTWSGLIIGLLCALFAWTMDQNKKK
>NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein
MVYSIKRRDDGSFVAYMKGVLFSKDGDSWYLPSPEEFKEIGDLEVNGTLVFEKTDEIEDDSPKFSDLCGLPLLSLEEALLSAGLAFETTGNNIAISCKDNHKLEVLSYEDLLLIVFCPECKTGILNFISFLDATGVGNDLFQPDCNYDEVWLPMNEETYQKTVEALSSVINVE
>NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2
MWVIIVYDINEKRVAKVLKYLRRYLNWIQNSVFEGELTYAELKKVKSGLKRLMNTQEDSVIIFSSSLSNDYKKEIIGLDKAKETQIL
>NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein
MHFEGRQGETIINTIICTVGASLRKLCNMTSSGITDRLLNLNDPIGNREFGAEINSLASILSQSVLSSRDYLYFLTSDTEEGKKIGDALKLFFDCSKDMSFKNVSVNAISDLDDSRPDDFQNKGLRNLVKRIAEIYKHHMDNLLINATGGYKAQIALSLAFGMGVKIPVYYRFETFDGVIKLPPMPLSLDVELWLENKGLLDTLEMNSVINEKDLEREYDYRINFSSLPAEIKLLIDREQDSVGHMLSLSPMGEVFVQACRLSLGKLDVEASLKDSSVPIENRLKKSSKEAHSNKMISDNQSFIDKLVSIPFIEEVLVRGSSQKFDRNEFVCKQFGEIIKARYSTRGGTLYMEIRTTARNPYELEKAVEEIKRLLK
>NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MQKSTFVCKTITPMLSRSMYSKTGKSWRFELRPQSVKGVMRFWFRALVPCVIDPNWLDGSKKPFAALHYLEGLMFGSQEKKSPFSLTVSYGDDIEESVNTLVESSDRFFRNALFGTYELKGDNPSFSYMMPDQSFTIRIRYSSSILPVQKTVTDSLMSLISNYSGFGAKARDGFGSFAISKAKGVEEDSVGEQYSTSKSLLLKMISELDPDERKFRLINEEPNLYPYDFPTLARSREMNSLIKSRSWKDIIGALTGQRTKDGDPVSKYSRLKLNELRKYGQPGDNLEPLRAAYFERTAPSREFVMRTSIMGLPIIYQRFGEYPGTTGKGTATVSNSNNSSGRKASPIFISVHKALNNSYFARILLMASKISPDRDNNDRPVIYAIVKGEPYPILGNENFEELWNLLKGVIE
>NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNWEKKIIALMHDPLFKAMDIRGHESSSAEILKALGISPDKVKEEDWIASAMDRLAIPWEKSNQVRVSLDDTGGFVHSLSSSKLDVLKHLPNLDSARSQFMANLRVISEGNKKENLFHALWWQLPDMMEGSAFLPADTRIPNHSIVDHLDSTSSLAGTIENGKIKASLISVSVGPVQSFIAAARKTMDLWSGSYLLSLITYKGIEYVGQKYGFDCVIFPSLRNIAFVKKSLSEWGVKFTVDSKVPKPSTRVASLPNRFVAIVPTSEVKETLKNVEKAIKDGWKEIYSVSLKAGKPLDETNLQMQLDTFPEVFTTSQELIEIENAKEIISNLYNDSGIKDEIDNLNSLSTQHGAHKPNAGALYSYSYRLLRSRADARKTLRTFSHFTDNSSVNGKTLQGDQFNGDMKAIFKLKDGEKTDHLNAVNAVKRLYASEINEKFPSVDEFAGKNEQKFIEFTGNMPESYKNSYYAILLMDGDRMGKWIGGEYAPQITEVIAEPLRTAIVSSDLPTKMKDYILMRKTVQPAYHRTVSRTLNIFSSLVQLAVEKHGGELVYSGGDDVLAFLPAVSVLECADEIRRMYSGTGDVELDSPAGKLQFKDEMLWIKGKPHSPMMGWKATMSAGIAVVNKKFPLSQALRIARESEHIAKDGLGRDSFVVSIVRRSGQISRNGAKWSTKDGSFNTIKSLREMIKKMDSSGFGSRSLRKLFGDDLILSNDEYVNKYIPYVLKKAGSRKEDDGSFERMFKNYFRKMIDLEKGIEAITEENSDLFEARKRAVDLLLVQDFLLRGDGR
>NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLNAVYFTPEDWICFRESTVFQSGGDAKTGLPKIETFLGAIKTALIKKAGENPLNLSSELKEIVGDSENPGSLRIWGPFIFNQVNSEIRHYFPSPNGIYRVEEGGEFKLMMPHCSVETEINGKTLKLTWIPSSVEGIETFDGSLIEMNEVSNLQRKLPFSILQSKEISQKLYQVESKVGIALERERKNAEESMLYTLSYYRFKPGAGFFVFADEYTAKTISGLSNVFIGGKTRAAEVDVNTIETEIFNVSQSSKTAICLVTPSVFSNGSLPSDMKIAGCDIKSANIQRKIAVSGWDLAKNQPKPIKHYVAPGTVYYLEGTLDNIQNISSESQDFGYGKYFTVDWDYIGRD
>NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKLKAFCLYAESQIHAGTGADVGIVDLPIQRERTTGFPVIQGIKGALRASGLIKDDTVFGSKPSKGGEENTDAGKISFSEAKILLFPVRSAEKMFVWVTCPIVLRRFARSTGKKLEVPDVQNGKVILADQNFNEKSLMLEELELQFEKNPEVASIAAFLSSCAPDSYMATKLKRDLVLVSDDLFAKIVKTMTEVQPRIRIDEKTGIVVSGALWYEEYLPQDSVLYFTARETVYSKGSESKLSELDEKTMIIGGKETTGKGFVFVKEVV
>NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MPSLNDWAKERVSSILGKCEKVQKSYKSEIKGLGSMLLQNGLYGTIAYYKVRDKDSSKEILADLSSLLSERMEIADVTEMNPINDLDYIKAQTIVLEAVKWLRRYADILIEGEDNG
>NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVDPKTIANRTIKNSSLNYDKLFPISKHSMTDTSQLSSLLQILMNRFSYCDRDSVRSLLERRDRIVTSFRKVLDRELQTKKYLMVGSGCPSIFDNGFTLMRNYGVPYIPASAFKGAFSHYVSQELEENSPLKQNFKFLFGTGEGDDNIKGALIFMDVIPKTYSLGIDIINNHFQPYYSDDKNEKAPNDYYDPVPVQYLVIANGSIFRFSVLEKEKIEDNLRKEVSRELINFLGDFGLGAKTSYGYGLFKEV
>NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKNFYLFASGQLSRKDNTLLLEREGRRKFIPIEKIESISTFGEIDLNTHLLSFLSKKEVALHVFSHNGWYSGSFVPRKQKVSGKLLVEQIKTFLDPIKRLKLSREFIDGAMHNMLRVLQRSSSKIPGYKDKIEGLKNTRERLQNTTGVNSVMAVEGAFRQYYYPILAGLTGQEFVTRIRQPPLGILNCMISFGNSLLYTRTLSKIYQTQLDPTVSFLHEPCEMRFSLCLDISEVFKPVIVDRLIMTLLNKAIITEDDFDKEMNSTLLTNEGMKKYVEHFEKFMEETVFHPTLKRKVSYNTLLLTECYKLIRSILSEEDYKALHMWW
>NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4
MEITERQPRIGGNAINYLHYCKTQLWFFLHNISMESTSESVQLGKLLQEEYSQGEDKDIVIDEISLDILRNTREIVEIKYGKEVREGHIYQVKYYLYYLKHKLGLHEFTARLTYPRAKKMIMLSLTEEDEEQIRRDLDEIKTIFNLDNAPLPLFKEGCKGCSYFDLCFS
>NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3
MSLAKPGVSLVEHTERVLDYAHSYLDQNKIALKNTNLDPKQISEAILTACAFHDIGKGCVEFSFDKKGFSHSLASAQIAMASLKESPIKNYILQSILGHHGSRFKDSFSSLEFQRQQATPNLELVNEFKEIKDYAKGHFRIELPDLDLQIPSPRELLKRLCNFFFGAPRDRRLYFLIQGILNLADWSASAKKSLSSASIKLDSRPLRTFQAEASTGKDTIILAPTGRGKSLAALVWTKSTGREKSTLFLPTVTTVEAMYKRYTEEVSDKTGLVHGNIAYYLYSNEGYSEDTRDRIFWMKAFDNPINVATLDQLLLMSLNWGRWEPKIVNIVNSAVIFDEIHASQPYTFGILLESIKMLNAMGTPVCVMSATLPSYMIQKLKEVLDYPVIVRDYEGESLRRITISHLEDVDPVEETKRQHKKGKKAILCFNTVKKATEAFKTLSDKIPDKEIILYHGRFNLEDRERILSRITGDSPPRIIVATQTIEISLDISYDVLITEAAPIDSLTQRFGRVNREGTTPIGEVMIFPQNENSYSVYNKNLVAKSLGLLKAHQTPSGLELREMMEDLLSEIENIEEEISAGKASWQFVREMNFQIYSMSIDQRLADDLIRRIPYKTIEVIPAEFRNDNSGKMQKLGKLVKVPVRDVIGRLEKDDDGFIYAPIIYDPSFGYLGPKEDEGSIVEGF
>NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5
MLVLQISIKGYTASFRSPASMNYQESLPFPPPTTITGIIGAATGREYFEAQNYCRDLSFGVHIQENEGIAKDAWAIKKVKDGGRSIGKAVVIREVLYQPNIRLLIVGPETKLKEIKKAISDPCFPLSLGRDDEFITFIQSELETAERVERSVIHNTVVKGDLQGKINITALNEGSIPHFKTYWLNSEFDRDKRNPKARRPKNRSPYTYISEPVEYSGEAVDVSDTVFPLWR
>NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MHPHRMEVKRLQIKCLSWGSISKVTMGNPNAGFTEGNIQTAKKIVAPDGSAFNYVSGQCQRHGLRERFAEIGEALSTPVDGEVETTLGDPLNYIDDDLFGFMIAVTGDNRKRTSPVRIAPLVSLFPYRGDRDLLTKTRKASDKGGNMVETEVYSAYLRGGGLIELDRVGKFDPSEIKETTLEIQKEERLRRLNLFLDSMMTLWTGGKQTNILSDISPKFIAFAFQTVKLPFLLESVSCDTKGKINAETLIDSITNYSSIIDRVIIGTTKVLDASALDAGVPETVEVLPMTDAFSRVKEILSTI
>NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein
MRVHIRSFWQMAGAVAIKRYTADCTITGNLFETQTPKKTIFENALKDMLNKNGKPWAPNLRPFLKQYTVLDKVSKILEENKIGSKVCSLCGSRVSTLEKLSMLGDPLSVKAENFQSFFSFGSGSGEVCLNCQFLGMMAGLALFYTSYKDGQDYVITYLFPESDTLESTYNTFLWMKDLHEPGSWRNLKVKARFYPQEPYETLLLSLHTLFEKTRFIPRSSFKVMQVSNTGRNNSFLNFDSFERVEELTTFFENVETLGGDFSKFMDSLVIPGSPSADVSRREEISRMILSFKPLEERLQMIIFDFDYPVHSIYEVIVASNTMKGVNGLDQMTIDLSKKAGEVIGNAVFEAQSFGDLYSLRNSRSLEDLLLTLADLEFKYAKEDWKIRIPEEFIRILNEESWKKPKALLVIFAVNKYLSRHYASSQNGGEKIAD
>NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein
MEDERDFYEDDCLDEDEGFGLEGSACATCWCKGVFCDCCGCTIQEGRNVCENCEDNS
>NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein
MKPNELGAPRNPTNIAQAIMLVVKVGLEVFDAACHIAVQYKKTKEELSK
>NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein
MITVYKKSVFAAFEEENVPVIANTVNTEGVMGAGLALEFKLRFPSYFDNYRERCSHEGPLPGSAWIFRGDIFPRIISLFVKEDWKMPSKISWIRSSLKRAEEIITESNFERVALPLAGAGKGGIDPQTSENITREVFESSKAEILLCLDKSPSKNEESMIKQLRAMSEYELKCLTLRPSIIKRLLDKREDVTRFREILDIRGIGIKTYSILFNALISREPGHDNQLNLF
>NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein
MVTSSNPLQAFGVKHLYYLSPVKNIPSILEHGVMSKMAVETLEIPYDDYSDQTVQTIRERKSLHEYVPLFFNTRNAMTFRYQKENRDFAILRLNSDLVTHYDCLVSDRIAACSDAEIYTLSEPALKKINIEVVLSTRNFYDNWLLKKRLGAEILVKIDMIEPEWIECIILDRTAEKIKGISIRQLRDSGYTYYFEG

Crispr_ID: NC_017934_5

• CRISPR_ID: NC_017934_5
• CRISPR_location: 1738012-1738379
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: cas2,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas4,cas3,cas5,cas7,cas8b1

Consensus repeat of NC_017934_5

Consensus_repeat	Method
GTTTCCATACCACTATGGTTCTTACGCAAC	CRISPRCasFinder
GTTTCCATACCACTATGGTTCTTACGCAAC	CRT
GTTTCCATACCACTATGGTTCTTACGCAAC	PILER-CR

spacers of NC_017934_5

>5.1|1738042|37|NC_017934|CRISPRCasFinder,CRT
ATCTTCTGGTTCGATATTCCTAGTATTACTTCTGCTG
>5.2|1738109|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTTTGGAGAGCAAACATTCATAAGGTTGAGAATCTCCT
>5.3|1738177|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCACTACAAGAAATGGTTAAAGTATTGTGATCTACCAA
>5.4|1738245|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCCAGAGCTGCAAACGAAAATGTAAGCAGAATAATCTC
>5.5|1738313|36|NC_017934|CRISPRCasFinder,CRT
CCGCACGGCGATGACTCAAGAGGTTGTCGGGGATAT

CRISPR arrays and Neighbor proteins around NC_017934_5

CRISPR arrays

The CRISPR arrays of NC_017934_5

>merge|NC_017934|5|1738012-1738379|CRISPRCasFinder,CRT,PILER-CR
CAATTCATACCACTATGGTTCTTACGCAACATCTTCTGGTTCGATATTCCTAGTATTACTTCTGCTGGTTTCCATACCACTATGGTTCTTACGCAACGTTTGGAGAGCAAACATTCATAAGGTTGAGAATCTCCTGTTTCCATACCACTATGGTTCTTACGCAACTCACTACAAGAAATGGTTAAAGTATTGTGATCTACCAAGTTTCCATACCACTATGGTTCTTACGCAACTCCAGAGCTGCAAACGAAAATGTAAGCAGAATAATCTCGTTTCCATACCACTATGGTTCTCACGCAACCCGCACGGCGATGACTCAAGAGGTTGTCGGGGATATGTTTCCATACCACTATGGTTCATATAAGAGC

>NC_017934|5|5|1738012-1738379|CRISPRCasFinder
CAATTCATACCACTATGGTTCTTACGCAAC	ATCTTCTGGTTCGATATTCCTAGTATTACTTCTGCTG
GTTTCCATACCACTATGGTTCTTACGCAAC	GTTTGGAGAGCAAACATTCATAAGGTTGAGAATCTCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACTACAAGAAATGGTTAAAGTATTGTGATCTACCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCCAGAGCTGCAAACGAAAATGTAAGCAGAATAATCTC
GTTTCCATACCACTATGGTTCTCACGCAAC	CCGCACGGCGATGACTCAAGAGGTTGTCGGGGATAT
GTTTCCATACCACTATGGTTCATATAAGAGC

>NC_017934|5|3|1738012-1738378|CRT
CAATTCATACCACTATGGTTCTTACGCAAC	ATCTTCTGGTTCGATATTCCTAGTATTACTTCTGCTG
GTTTCCATACCACTATGGTTCTTACGCAAC	GTTTGGAGAGCAAACATTCATAAGGTTGAGAATCTCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACTACAAGAAATGGTTAAAGTATTGTGATCTACCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCCAGAGCTGCAAACGAAAATGTAAGCAGAATAATCTC
GTTTCCATACCACTATGGTTCTCACGCAAC	CCGCACGGCGATGACTCAAGAGGTTGTCGGGGATAT
GTTTCCATACCACTATGGTTCATATAAGAG

>NC_017934|5|3|1738079-1738312|PILER-CR
GTTTCCATACCACTATGGTTCTTACGCAAC	GTTTGGAGAGCAAACATTCATAAGGTTGAGAATCTCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACTACAAGAAATGGTTAAAGTATTGTGATCTACCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCCAGAGCTGCAAACGAAAATGTAAGCAGAATAATCTC
GTTTCCATACCACTATGGTTCTCACGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|213662
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	unknown	unknown	gnl|CDD|376386
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	unknown	unknown	gnl|CDD|394873
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	unknown	unknown	gnl|CDD|373093
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1e-117	387.6	1.4
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.7e-39	130.6	0.0
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	6.8e-56	184.3	0.0
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	4.9e-48	158.7	0.1
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	7e-42	138.0	0.2
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.8e-18	60.8	0.1
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2e-89	295.4	0.0
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	9.1e-70	230.2	0.1
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5e-29	95.1	1.3
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	1.1e-153	507.1	2.6
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	9.7e-51	168.1	0.0
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	5.4e-21	69.9	0.0
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.6e-38	126.5	0.0
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	3.8e-72	238.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.86001e-139
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.25246e-28
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	2.31508e-57
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.1734e-41
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.1585e-47
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.28536e-17
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.35605e-81
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.41289e-68
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.20607e-65
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	gnl|CDD|376386	pfam00771, FHIPEP, FHIPEP family.	0.00206316
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.5233e-44
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.0725e-18
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.73895e-38
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	gnl|CDD|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	1.3522e-17
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	gnl|CDD|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	1.96283e-30
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40039e-29

Protein sequences

>NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein
MSLPYKLFIGIIALAGVLGILGLISGTWSGLIIGLLCALFAWTMDQNKKK
>NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein
MVYSIKRRDDGSFVAYMKGVLFSKDGDSWYLPSPEEFKEIGDLEVNGTLVFEKTDEIEDDSPKFSDLCGLPLLSLEEALLSAGLAFETTGNNIAISCKDNHKLEVLSYEDLLLIVFCPECKTGILNFISFLDATGVGNDLFQPDCNYDEVWLPMNEETYQKTVEALSSVINVE
>NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2
MWVIIVYDINEKRVAKVLKYLRRYLNWIQNSVFEGELTYAELKKVKSGLKRLMNTQEDSVIIFSSSLSNDYKKEIIGLDKAKETQIL
>NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein
MHFEGRQGETIINTIICTVGASLRKLCNMTSSGITDRLLNLNDPIGNREFGAEINSLASILSQSVLSSRDYLYFLTSDTEEGKKIGDALKLFFDCSKDMSFKNVSVNAISDLDDSRPDDFQNKGLRNLVKRIAEIYKHHMDNLLINATGGYKAQIALSLAFGMGVKIPVYYRFETFDGVIKLPPMPLSLDVELWLENKGLLDTLEMNSVINEKDLEREYDYRINFSSLPAEIKLLIDREQDSVGHMLSLSPMGEVFVQACRLSLGKLDVEASLKDSSVPIENRLKKSSKEAHSNKMISDNQSFIDKLVSIPFIEEVLVRGSSQKFDRNEFVCKQFGEIIKARYSTRGGTLYMEIRTTARNPYELEKAVEEIKRLLK
>NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MQKSTFVCKTITPMLSRSMYSKTGKSWRFELRPQSVKGVMRFWFRALVPCVIDPNWLDGSKKPFAALHYLEGLMFGSQEKKSPFSLTVSYGDDIEESVNTLVESSDRFFRNALFGTYELKGDNPSFSYMMPDQSFTIRIRYSSSILPVQKTVTDSLMSLISNYSGFGAKARDGFGSFAISKAKGVEEDSVGEQYSTSKSLLLKMISELDPDERKFRLINEEPNLYPYDFPTLARSREMNSLIKSRSWKDIIGALTGQRTKDGDPVSKYSRLKLNELRKYGQPGDNLEPLRAAYFERTAPSREFVMRTSIMGLPIIYQRFGEYPGTTGKGTATVSNSNNSSGRKASPIFISVHKALNNSYFARILLMASKISPDRDNNDRPVIYAIVKGEPYPILGNENFEELWNLLKGVIE
>NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNWEKKIIALMHDPLFKAMDIRGHESSSAEILKALGISPDKVKEEDWIASAMDRLAIPWEKSNQVRVSLDDTGGFVHSLSSSKLDVLKHLPNLDSARSQFMANLRVISEGNKKENLFHALWWQLPDMMEGSAFLPADTRIPNHSIVDHLDSTSSLAGTIENGKIKASLISVSVGPVQSFIAAARKTMDLWSGSYLLSLITYKGIEYVGQKYGFDCVIFPSLRNIAFVKKSLSEWGVKFTVDSKVPKPSTRVASLPNRFVAIVPTSEVKETLKNVEKAIKDGWKEIYSVSLKAGKPLDETNLQMQLDTFPEVFTTSQELIEIENAKEIISNLYNDSGIKDEIDNLNSLSTQHGAHKPNAGALYSYSYRLLRSRADARKTLRTFSHFTDNSSVNGKTLQGDQFNGDMKAIFKLKDGEKTDHLNAVNAVKRLYASEINEKFPSVDEFAGKNEQKFIEFTGNMPESYKNSYYAILLMDGDRMGKWIGGEYAPQITEVIAEPLRTAIVSSDLPTKMKDYILMRKTVQPAYHRTVSRTLNIFSSLVQLAVEKHGGELVYSGGDDVLAFLPAVSVLECADEIRRMYSGTGDVELDSPAGKLQFKDEMLWIKGKPHSPMMGWKATMSAGIAVVNKKFPLSQALRIARESEHIAKDGLGRDSFVVSIVRRSGQISRNGAKWSTKDGSFNTIKSLREMIKKMDSSGFGSRSLRKLFGDDLILSNDEYVNKYIPYVLKKAGSRKEDDGSFERMFKNYFRKMIDLEKGIEAITEENSDLFEARKRAVDLLLVQDFLLRGDGR
>NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLNAVYFTPEDWICFRESTVFQSGGDAKTGLPKIETFLGAIKTALIKKAGENPLNLSSELKEIVGDSENPGSLRIWGPFIFNQVNSEIRHYFPSPNGIYRVEEGGEFKLMMPHCSVETEINGKTLKLTWIPSSVEGIETFDGSLIEMNEVSNLQRKLPFSILQSKEISQKLYQVESKVGIALERERKNAEESMLYTLSYYRFKPGAGFFVFADEYTAKTISGLSNVFIGGKTRAAEVDVNTIETEIFNVSQSSKTAICLVTPSVFSNGSLPSDMKIAGCDIKSANIQRKIAVSGWDLAKNQPKPIKHYVAPGTVYYLEGTLDNIQNISSESQDFGYGKYFTVDWDYIGRD
>NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKLKAFCLYAESQIHAGTGADVGIVDLPIQRERTTGFPVIQGIKGALRASGLIKDDTVFGSKPSKGGEENTDAGKISFSEAKILLFPVRSAEKMFVWVTCPIVLRRFARSTGKKLEVPDVQNGKVILADQNFNEKSLMLEELELQFEKNPEVASIAAFLSSCAPDSYMATKLKRDLVLVSDDLFAKIVKTMTEVQPRIRIDEKTGIVVSGALWYEEYLPQDSVLYFTARETVYSKGSESKLSELDEKTMIIGGKETTGKGFVFVKEVV
>NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MPSLNDWAKERVSSILGKCEKVQKSYKSEIKGLGSMLLQNGLYGTIAYYKVRDKDSSKEILADLSSLLSERMEIADVTEMNPINDLDYIKAQTIVLEAVKWLRRYADILIEGEDNG
>NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVDPKTIANRTIKNSSLNYDKLFPISKHSMTDTSQLSSLLQILMNRFSYCDRDSVRSLLERRDRIVTSFRKVLDRELQTKKYLMVGSGCPSIFDNGFTLMRNYGVPYIPASAFKGAFSHYVSQELEENSPLKQNFKFLFGTGEGDDNIKGALIFMDVIPKTYSLGIDIINNHFQPYYSDDKNEKAPNDYYDPVPVQYLVIANGSIFRFSVLEKEKIEDNLRKEVSRELINFLGDFGLGAKTSYGYGLFKEV
>NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKNFYLFASGQLSRKDNTLLLEREGRRKFIPIEKIESISTFGEIDLNTHLLSFLSKKEVALHVFSHNGWYSGSFVPRKQKVSGKLLVEQIKTFLDPIKRLKLSREFIDGAMHNMLRVLQRSSSKIPGYKDKIEGLKNTRERLQNTTGVNSVMAVEGAFRQYYYPILAGLTGQEFVTRIRQPPLGILNCMISFGNSLLYTRTLSKIYQTQLDPTVSFLHEPCEMRFSLCLDISEVFKPVIVDRLIMTLLNKAIITEDDFDKEMNSTLLTNEGMKKYVEHFEKFMEETVFHPTLKRKVSYNTLLLTECYKLIRSILSEEDYKALHMWW
>NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4
MEITERQPRIGGNAINYLHYCKTQLWFFLHNISMESTSESVQLGKLLQEEYSQGEDKDIVIDEISLDILRNTREIVEIKYGKEVREGHIYQVKYYLYYLKHKLGLHEFTARLTYPRAKKMIMLSLTEEDEEQIRRDLDEIKTIFNLDNAPLPLFKEGCKGCSYFDLCFS
>NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3
MSLAKPGVSLVEHTERVLDYAHSYLDQNKIALKNTNLDPKQISEAILTACAFHDIGKGCVEFSFDKKGFSHSLASAQIAMASLKESPIKNYILQSILGHHGSRFKDSFSSLEFQRQQATPNLELVNEFKEIKDYAKGHFRIELPDLDLQIPSPRELLKRLCNFFFGAPRDRRLYFLIQGILNLADWSASAKKSLSSASIKLDSRPLRTFQAEASTGKDTIILAPTGRGKSLAALVWTKSTGREKSTLFLPTVTTVEAMYKRYTEEVSDKTGLVHGNIAYYLYSNEGYSEDTRDRIFWMKAFDNPINVATLDQLLLMSLNWGRWEPKIVNIVNSAVIFDEIHASQPYTFGILLESIKMLNAMGTPVCVMSATLPSYMIQKLKEVLDYPVIVRDYEGESLRRITISHLEDVDPVEETKRQHKKGKKAILCFNTVKKATEAFKTLSDKIPDKEIILYHGRFNLEDRERILSRITGDSPPRIIVATQTIEISLDISYDVLITEAAPIDSLTQRFGRVNREGTTPIGEVMIFPQNENSYSVYNKNLVAKSLGLLKAHQTPSGLELREMMEDLLSEIENIEEEISAGKASWQFVREMNFQIYSMSIDQRLADDLIRRIPYKTIEVIPAEFRNDNSGKMQKLGKLVKVPVRDVIGRLEKDDDGFIYAPIIYDPSFGYLGPKEDEGSIVEGF
>NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5
MLVLQISIKGYTASFRSPASMNYQESLPFPPPTTITGIIGAATGREYFEAQNYCRDLSFGVHIQENEGIAKDAWAIKKVKDGGRSIGKAVVIREVLYQPNIRLLIVGPETKLKEIKKAISDPCFPLSLGRDDEFITFIQSELETAERVERSVIHNTVVKGDLQGKINITALNEGSIPHFKTYWLNSEFDRDKRNPKARRPKNRSPYTYISEPVEYSGEAVDVSDTVFPLWR
>NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MHPHRMEVKRLQIKCLSWGSISKVTMGNPNAGFTEGNIQTAKKIVAPDGSAFNYVSGQCQRHGLRERFAEIGEALSTPVDGEVETTLGDPLNYIDDDLFGFMIAVTGDNRKRTSPVRIAPLVSLFPYRGDRDLLTKTRKASDKGGNMVETEVYSAYLRGGGLIELDRVGKFDPSEIKETTLEIQKEERLRRLNLFLDSMMTLWTGGKQTNILSDISPKFIAFAFQTVKLPFLLESVSCDTKGKINAETLIDSITNYSSIIDRVIIGTTKVLDASALDAGVPETVEVLPMTDAFSRVKEILSTI
>NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein
MRVHIRSFWQMAGAVAIKRYTADCTITGNLFETQTPKKTIFENALKDMLNKNGKPWAPNLRPFLKQYTVLDKVSKILEENKIGSKVCSLCGSRVSTLEKLSMLGDPLSVKAENFQSFFSFGSGSGEVCLNCQFLGMMAGLALFYTSYKDGQDYVITYLFPESDTLESTYNTFLWMKDLHEPGSWRNLKVKARFYPQEPYETLLLSLHTLFEKTRFIPRSSFKVMQVSNTGRNNSFLNFDSFERVEELTTFFENVETLGGDFSKFMDSLVIPGSPSADVSRREEISRMILSFKPLEERLQMIIFDFDYPVHSIYEVIVASNTMKGVNGLDQMTIDLSKKAGEVIGNAVFEAQSFGDLYSLRNSRSLEDLLLTLADLEFKYAKEDWKIRIPEEFIRILNEESWKKPKALLVIFAVNKYLSRHYASSQNGGEKIAD
>NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein
MEDERDFYEDDCLDEDEGFGLEGSACATCWCKGVFCDCCGCTIQEGRNVCENCEDNS
>NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein
MKPNELGAPRNPTNIAQAIMLVVKVGLEVFDAACHIAVQYKKTKEELSK
>NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein
MITVYKKSVFAAFEEENVPVIANTVNTEGVMGAGLALEFKLRFPSYFDNYRERCSHEGPLPGSAWIFRGDIFPRIISLFVKEDWKMPSKISWIRSSLKRAEEIITESNFERVALPLAGAGKGGIDPQTSENITREVFESSKAEILLCLDKSPSKNEESMIKQLRAMSEYELKCLTLRPSIIKRLLDKREDVTRFREILDIRGIGIKTYSILFNALISREPGHDNQLNLF
>NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein
MVTSSNPLQAFGVKHLYYLSPVKNIPSILEHGVMSKMAVETLEIPYDDYSDQTVQTIRERKSLHEYVPLFFNTRNAMTFRYQKENRDFAILRLNSDLVTHYDCLVSDRIAACSDAEIYTLSEPALKKINIEVVLSTRNFYDNWLLKKRLGAEILVKIDMIEPEWIECIILDRTAEKIKGISIRQLRDSGYTYYFEG

Crispr_ID: NC_017934_6

• CRISPR_ID: NC_017934_6
• CRISPR_location: 1738636-1739133
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: cas2,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas4,cas3,cas5,cas7,cas8b1

Consensus repeat of NC_017934_6

Consensus_repeat	Method
GTTTCCATACCACTATGGTTCTTACGCAAC	CRISPRCasFinder
GTTTCCATACCACTATGGTTCT	CRT
GTTTCCATACCACTATGGTTCTCACGCAAC	PILER-CR

spacers of NC_017934_6

>6.1|1738666|37|NC_017934|CRISPRCasFinder
GCCGGGCAGTTCTCTCATAGAAGGATTGCGGCTCAAT
>6.2|1738733|38|NC_017934|CRISPRCasFinder,PILER-CR
CTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACAC
>6.3|1738801|35|NC_017934|CRISPRCasFinder,PILER-CR
TATCCCATCTTTCAGGCGAAGCATACCTATTTTCA
>6.4|1738866|36|NC_017934|CRISPRCasFinder,PILER-CR
TTCTTTTTGCTTATTATGTGTATGGATTCGTTACTT
>6.5|1738932|38|NC_017934|CRISPRCasFinder,PILER-CR
CTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACA
>6.6|1739000|34|NC_017934|CRISPRCasFinder,PILER-CR
GGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAA
>6.7|1739064|39|NC_017934|CRISPRCasFinder
TGAGATTGATCCGGAGGATGTTCTGGATGGTGATGATCT
>6.8|1738658|45|NC_017934|CRT
TACGCAACGCCGGGCAGTTCTCTCATAGAAGGATTGCGGCTCAAT
>6.9|1738725|46|NC_017934|CRT
TACGCAACCTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACAC
>6.10|1738793|43|NC_017934|CRT
TACGCAACTATCCCATCTTTCAGGCGAAGCATACCTATTTTCA
>6.11|1738858|44|NC_017934|CRT
CACGCAACTTCTTTTTGCTTATTATGTGTATGGATTCGTTACTT
>6.12|1738924|46|NC_017934|CRT
CACGCAACCTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACA
>6.13|1738992|42|NC_017934|CRT
CACGCAACGGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAA
>6.14|1739056|47|NC_017934|CRT
CACGCAACTGAGATTGATCCGGAGGATGTTCTGGATGGTGATGATCT

CRISPR arrays and Neighbor proteins around NC_017934_6

CRISPR arrays

The CRISPR arrays of NC_017934_6

>merge|NC_017934|6|1738636-1739133|CRISPRCasFinder,CRT,PILER-CR
CAATTCATACCACTATGGTTCTTACGCAACGCCGGGCAGTTCTCTCATAGAAGGATTGCGGCTCAATGTTTCCATACCACTATGGTTCTTACGCAACCTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACACGTTTCCATACCACTATGGTTCTTACGCAACTATCCCATCTTTCAGGCGAAGCATACCTATTTTCAGTTTCCATACCACTATGGTTCTCACGCAACTTCTTTTTGCTTATTATGTGTATGGATTCGTTACTTGTTTCCATACCACTATGGTTCTCACGCAACCTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACAGTTTCCATACCACTATGGTTCTCACGCAACGGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAAGTTTCCATACCACTATGGTTCTCACGCAACTGAGATTGATCCGGAGGATGTTCTGGATGGTGATGATCTGTTTCCATACCACTATGGTTCATACAAAAGC

>NC_017934|6|6|1738636-1739133|CRISPRCasFinder
CAATTCATACCACTATGGTTCTTACGCAAC	GCCGGGCAGTTCTCTCATAGAAGGATTGCGGCTCAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	TATCCCATCTTTCAGGCGAAGCATACCTATTTTCA
GTTTCCATACCACTATGGTTCTCACGCAAC	TTCTTTTTGCTTATTATGTGTATGGATTCGTTACTT
GTTTCCATACCACTATGGTTCTCACGCAAC	CTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACA
GTTTCCATACCACTATGGTTCTCACGCAAC	GGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAA
GTTTCCATACCACTATGGTTCTCACGCAAC	TGAGATTGATCCGGAGGATGTTCTGGATGGTGATGATCT
GTTTCCATACCACTATGGTTCATACAAAAGC

>NC_017934|6|4|1738636-1739124|CRT
CAATTCATACCACTATGGTTCT	TACGCAACGCCGGGCAGTTCTCTCATAGAAGGATTGCGGCTCAAT
GTTTCCATACCACTATGGTTCT	TACGCAACCTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACAC
GTTTCCATACCACTATGGTTCT	TACGCAACTATCCCATCTTTCAGGCGAAGCATACCTATTTTCA
GTTTCCATACCACTATGGTTCT	CACGCAACTTCTTTTTGCTTATTATGTGTATGGATTCGTTACTT
GTTTCCATACCACTATGGTTCT	CACGCAACCTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACA
GTTTCCATACCACTATGGTTCT	CACGCAACGGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAA
GTTTCCATACCACTATGGTTCT	CACGCAACTGAGATTGATCCGGAGGATGTTCTGGATGGTGATGATCT
GTTTCCATACCACTATGGTTCA

>NC_017934|6|4|1738703-1739063|PILER-CR
GTTTCCATACCACTATGGTTCTTACGCAAC	CTACAGCGGGAAGTCGCTTCTATTGCAGCACAAGACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	TATCCCATCTTTCAGGCGAAGCATACCTATTTTCA
GTTTCCATACCACTATGGTTCTCACGCAAC	TTCTTTTTGCTTATTATGTGTATGGATTCGTTACTT
GTTTCCATACCACTATGGTTCTCACGCAAC	CTAAGCGTTCCGCACCGTTTTTTCTTCCATGCTTAACA
GTTTCCATACCACTATGGTTCTCACGCAAC	GGTGTAGATTGGTCGCTTCCTGCGGTATCGTCAA
GTTTCCATACCACTATGGTTCTCACGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|213662
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	unknown	unknown	gnl|CDD|376386
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	unknown	unknown	gnl|CDD|394873
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	unknown	unknown	gnl|CDD|373093
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1e-117	387.6	1.4
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.7e-39	130.6	0.0
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	6.8e-56	184.3	0.0
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	4.9e-48	158.7	0.1
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	7e-42	138.0	0.2
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.8e-18	60.8	0.1
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2e-89	295.4	0.0
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	9.1e-70	230.2	0.1
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5e-29	95.1	1.3
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	1.1e-153	507.1	2.6
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	9.7e-51	168.1	0.0
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	5.4e-21	69.9	0.0
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.6e-38	126.5	0.0
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	3.8e-72	238.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.86001e-139
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.25246e-28
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	2.31508e-57
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.1734e-41
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.1585e-47
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.28536e-17
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.35605e-81
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.41289e-68
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.20607e-65
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	gnl|CDD|376386	pfam00771, FHIPEP, FHIPEP family.	0.00206316
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.5233e-44
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.0725e-18
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.73895e-38
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	gnl|CDD|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	1.3522e-17
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	gnl|CDD|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	1.96283e-30
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40039e-29

Protein sequences

>NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein
MSLPYKLFIGIIALAGVLGILGLISGTWSGLIIGLLCALFAWTMDQNKKK
>NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein
MVYSIKRRDDGSFVAYMKGVLFSKDGDSWYLPSPEEFKEIGDLEVNGTLVFEKTDEIEDDSPKFSDLCGLPLLSLEEALLSAGLAFETTGNNIAISCKDNHKLEVLSYEDLLLIVFCPECKTGILNFISFLDATGVGNDLFQPDCNYDEVWLPMNEETYQKTVEALSSVINVE
>NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2
MWVIIVYDINEKRVAKVLKYLRRYLNWIQNSVFEGELTYAELKKVKSGLKRLMNTQEDSVIIFSSSLSNDYKKEIIGLDKAKETQIL
>NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein
MHFEGRQGETIINTIICTVGASLRKLCNMTSSGITDRLLNLNDPIGNREFGAEINSLASILSQSVLSSRDYLYFLTSDTEEGKKIGDALKLFFDCSKDMSFKNVSVNAISDLDDSRPDDFQNKGLRNLVKRIAEIYKHHMDNLLINATGGYKAQIALSLAFGMGVKIPVYYRFETFDGVIKLPPMPLSLDVELWLENKGLLDTLEMNSVINEKDLEREYDYRINFSSLPAEIKLLIDREQDSVGHMLSLSPMGEVFVQACRLSLGKLDVEASLKDSSVPIENRLKKSSKEAHSNKMISDNQSFIDKLVSIPFIEEVLVRGSSQKFDRNEFVCKQFGEIIKARYSTRGGTLYMEIRTTARNPYELEKAVEEIKRLLK
>NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MQKSTFVCKTITPMLSRSMYSKTGKSWRFELRPQSVKGVMRFWFRALVPCVIDPNWLDGSKKPFAALHYLEGLMFGSQEKKSPFSLTVSYGDDIEESVNTLVESSDRFFRNALFGTYELKGDNPSFSYMMPDQSFTIRIRYSSSILPVQKTVTDSLMSLISNYSGFGAKARDGFGSFAISKAKGVEEDSVGEQYSTSKSLLLKMISELDPDERKFRLINEEPNLYPYDFPTLARSREMNSLIKSRSWKDIIGALTGQRTKDGDPVSKYSRLKLNELRKYGQPGDNLEPLRAAYFERTAPSREFVMRTSIMGLPIIYQRFGEYPGTTGKGTATVSNSNNSSGRKASPIFISVHKALNNSYFARILLMASKISPDRDNNDRPVIYAIVKGEPYPILGNENFEELWNLLKGVIE
>NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNWEKKIIALMHDPLFKAMDIRGHESSSAEILKALGISPDKVKEEDWIASAMDRLAIPWEKSNQVRVSLDDTGGFVHSLSSSKLDVLKHLPNLDSARSQFMANLRVISEGNKKENLFHALWWQLPDMMEGSAFLPADTRIPNHSIVDHLDSTSSLAGTIENGKIKASLISVSVGPVQSFIAAARKTMDLWSGSYLLSLITYKGIEYVGQKYGFDCVIFPSLRNIAFVKKSLSEWGVKFTVDSKVPKPSTRVASLPNRFVAIVPTSEVKETLKNVEKAIKDGWKEIYSVSLKAGKPLDETNLQMQLDTFPEVFTTSQELIEIENAKEIISNLYNDSGIKDEIDNLNSLSTQHGAHKPNAGALYSYSYRLLRSRADARKTLRTFSHFTDNSSVNGKTLQGDQFNGDMKAIFKLKDGEKTDHLNAVNAVKRLYASEINEKFPSVDEFAGKNEQKFIEFTGNMPESYKNSYYAILLMDGDRMGKWIGGEYAPQITEVIAEPLRTAIVSSDLPTKMKDYILMRKTVQPAYHRTVSRTLNIFSSLVQLAVEKHGGELVYSGGDDVLAFLPAVSVLECADEIRRMYSGTGDVELDSPAGKLQFKDEMLWIKGKPHSPMMGWKATMSAGIAVVNKKFPLSQALRIARESEHIAKDGLGRDSFVVSIVRRSGQISRNGAKWSTKDGSFNTIKSLREMIKKMDSSGFGSRSLRKLFGDDLILSNDEYVNKYIPYVLKKAGSRKEDDGSFERMFKNYFRKMIDLEKGIEAITEENSDLFEARKRAVDLLLVQDFLLRGDGR
>NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLNAVYFTPEDWICFRESTVFQSGGDAKTGLPKIETFLGAIKTALIKKAGENPLNLSSELKEIVGDSENPGSLRIWGPFIFNQVNSEIRHYFPSPNGIYRVEEGGEFKLMMPHCSVETEINGKTLKLTWIPSSVEGIETFDGSLIEMNEVSNLQRKLPFSILQSKEISQKLYQVESKVGIALERERKNAEESMLYTLSYYRFKPGAGFFVFADEYTAKTISGLSNVFIGGKTRAAEVDVNTIETEIFNVSQSSKTAICLVTPSVFSNGSLPSDMKIAGCDIKSANIQRKIAVSGWDLAKNQPKPIKHYVAPGTVYYLEGTLDNIQNISSESQDFGYGKYFTVDWDYIGRD
>NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKLKAFCLYAESQIHAGTGADVGIVDLPIQRERTTGFPVIQGIKGALRASGLIKDDTVFGSKPSKGGEENTDAGKISFSEAKILLFPVRSAEKMFVWVTCPIVLRRFARSTGKKLEVPDVQNGKVILADQNFNEKSLMLEELELQFEKNPEVASIAAFLSSCAPDSYMATKLKRDLVLVSDDLFAKIVKTMTEVQPRIRIDEKTGIVVSGALWYEEYLPQDSVLYFTARETVYSKGSESKLSELDEKTMIIGGKETTGKGFVFVKEVV
>NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MPSLNDWAKERVSSILGKCEKVQKSYKSEIKGLGSMLLQNGLYGTIAYYKVRDKDSSKEILADLSSLLSERMEIADVTEMNPINDLDYIKAQTIVLEAVKWLRRYADILIEGEDNG
>NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVDPKTIANRTIKNSSLNYDKLFPISKHSMTDTSQLSSLLQILMNRFSYCDRDSVRSLLERRDRIVTSFRKVLDRELQTKKYLMVGSGCPSIFDNGFTLMRNYGVPYIPASAFKGAFSHYVSQELEENSPLKQNFKFLFGTGEGDDNIKGALIFMDVIPKTYSLGIDIINNHFQPYYSDDKNEKAPNDYYDPVPVQYLVIANGSIFRFSVLEKEKIEDNLRKEVSRELINFLGDFGLGAKTSYGYGLFKEV
>NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKNFYLFASGQLSRKDNTLLLEREGRRKFIPIEKIESISTFGEIDLNTHLLSFLSKKEVALHVFSHNGWYSGSFVPRKQKVSGKLLVEQIKTFLDPIKRLKLSREFIDGAMHNMLRVLQRSSSKIPGYKDKIEGLKNTRERLQNTTGVNSVMAVEGAFRQYYYPILAGLTGQEFVTRIRQPPLGILNCMISFGNSLLYTRTLSKIYQTQLDPTVSFLHEPCEMRFSLCLDISEVFKPVIVDRLIMTLLNKAIITEDDFDKEMNSTLLTNEGMKKYVEHFEKFMEETVFHPTLKRKVSYNTLLLTECYKLIRSILSEEDYKALHMWW
>NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4
MEITERQPRIGGNAINYLHYCKTQLWFFLHNISMESTSESVQLGKLLQEEYSQGEDKDIVIDEISLDILRNTREIVEIKYGKEVREGHIYQVKYYLYYLKHKLGLHEFTARLTYPRAKKMIMLSLTEEDEEQIRRDLDEIKTIFNLDNAPLPLFKEGCKGCSYFDLCFS
>NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3
MSLAKPGVSLVEHTERVLDYAHSYLDQNKIALKNTNLDPKQISEAILTACAFHDIGKGCVEFSFDKKGFSHSLASAQIAMASLKESPIKNYILQSILGHHGSRFKDSFSSLEFQRQQATPNLELVNEFKEIKDYAKGHFRIELPDLDLQIPSPRELLKRLCNFFFGAPRDRRLYFLIQGILNLADWSASAKKSLSSASIKLDSRPLRTFQAEASTGKDTIILAPTGRGKSLAALVWTKSTGREKSTLFLPTVTTVEAMYKRYTEEVSDKTGLVHGNIAYYLYSNEGYSEDTRDRIFWMKAFDNPINVATLDQLLLMSLNWGRWEPKIVNIVNSAVIFDEIHASQPYTFGILLESIKMLNAMGTPVCVMSATLPSYMIQKLKEVLDYPVIVRDYEGESLRRITISHLEDVDPVEETKRQHKKGKKAILCFNTVKKATEAFKTLSDKIPDKEIILYHGRFNLEDRERILSRITGDSPPRIIVATQTIEISLDISYDVLITEAAPIDSLTQRFGRVNREGTTPIGEVMIFPQNENSYSVYNKNLVAKSLGLLKAHQTPSGLELREMMEDLLSEIENIEEEISAGKASWQFVREMNFQIYSMSIDQRLADDLIRRIPYKTIEVIPAEFRNDNSGKMQKLGKLVKVPVRDVIGRLEKDDDGFIYAPIIYDPSFGYLGPKEDEGSIVEGF
>NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5
MLVLQISIKGYTASFRSPASMNYQESLPFPPPTTITGIIGAATGREYFEAQNYCRDLSFGVHIQENEGIAKDAWAIKKVKDGGRSIGKAVVIREVLYQPNIRLLIVGPETKLKEIKKAISDPCFPLSLGRDDEFITFIQSELETAERVERSVIHNTVVKGDLQGKINITALNEGSIPHFKTYWLNSEFDRDKRNPKARRPKNRSPYTYISEPVEYSGEAVDVSDTVFPLWR
>NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MHPHRMEVKRLQIKCLSWGSISKVTMGNPNAGFTEGNIQTAKKIVAPDGSAFNYVSGQCQRHGLRERFAEIGEALSTPVDGEVETTLGDPLNYIDDDLFGFMIAVTGDNRKRTSPVRIAPLVSLFPYRGDRDLLTKTRKASDKGGNMVETEVYSAYLRGGGLIELDRVGKFDPSEIKETTLEIQKEERLRRLNLFLDSMMTLWTGGKQTNILSDISPKFIAFAFQTVKLPFLLESVSCDTKGKINAETLIDSITNYSSIIDRVIIGTTKVLDASALDAGVPETVEVLPMTDAFSRVKEILSTI
>NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein
MRVHIRSFWQMAGAVAIKRYTADCTITGNLFETQTPKKTIFENALKDMLNKNGKPWAPNLRPFLKQYTVLDKVSKILEENKIGSKVCSLCGSRVSTLEKLSMLGDPLSVKAENFQSFFSFGSGSGEVCLNCQFLGMMAGLALFYTSYKDGQDYVITYLFPESDTLESTYNTFLWMKDLHEPGSWRNLKVKARFYPQEPYETLLLSLHTLFEKTRFIPRSSFKVMQVSNTGRNNSFLNFDSFERVEELTTFFENVETLGGDFSKFMDSLVIPGSPSADVSRREEISRMILSFKPLEERLQMIIFDFDYPVHSIYEVIVASNTMKGVNGLDQMTIDLSKKAGEVIGNAVFEAQSFGDLYSLRNSRSLEDLLLTLADLEFKYAKEDWKIRIPEEFIRILNEESWKKPKALLVIFAVNKYLSRHYASSQNGGEKIAD
>NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein
MEDERDFYEDDCLDEDEGFGLEGSACATCWCKGVFCDCCGCTIQEGRNVCENCEDNS
>NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein
MKPNELGAPRNPTNIAQAIMLVVKVGLEVFDAACHIAVQYKKTKEELSK
>NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein
MITVYKKSVFAAFEEENVPVIANTVNTEGVMGAGLALEFKLRFPSYFDNYRERCSHEGPLPGSAWIFRGDIFPRIISLFVKEDWKMPSKISWIRSSLKRAEEIITESNFERVALPLAGAGKGGIDPQTSENITREVFESSKAEILLCLDKSPSKNEESMIKQLRAMSEYELKCLTLRPSIIKRLLDKREDVTRFREILDIRGIGIKTYSILFNALISREPGHDNQLNLF
>NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein
MVTSSNPLQAFGVKHLYYLSPVKNIPSILEHGVMSKMAVETLEIPYDDYSDQTVQTIRERKSLHEYVPLFFNTRNAMTFRYQKENRDFAILRLNSDLVTHYDCLVSDRIAACSDAEIYTLSEPALKKINIEVVLSTRNFYDNWLLKKRLGAEILVKIDMIEPEWIECIILDRTAEKIKGISIRQLRDSGYTYYFEG

Crispr_ID: NC_017934_7

• CRISPR_ID: NC_017934_7
• CRISPR_location: 1739718-1744360
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 69 spacers
• Cas_protein_info: cas2,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas4,cas3,cas5,cas7,cas8b1

Consensus repeat of NC_017934_7

Consensus_repeat	Method
GTTTCCATACCACTATGGTTCTTACGCAAC	CRISPRCasFinder
GTTTCCATACCACTATGGTTCT	CRT
GTTTCCATACCACTATGGTTCTTACGCAAC	PILER-CR

spacers of NC_017934_7

>7.1|1739748|38|NC_017934|CRISPRCasFinder
GTTATATAAAAAAGGAGGAAAAATATGAATAAGCTAAT
>7.2|1739816|37|NC_017934|CRISPRCasFinder
TGTCCCTGGCCGCAGGGTAAACTCTGTCGGCAAATAT
>7.3|1739883|36|NC_017934|CRISPRCasFinder
CTATCAGCTGTATTCTATAGAAGACGTCAGTATTGC
>7.4|1739949|35|NC_017934|CRISPRCasFinder,PILER-CR
ATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAAC
>7.5|1740014|37|NC_017934|CRISPRCasFinder,PILER-CR
CAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTT
>7.6|1740081|37|NC_017934|CRISPRCasFinder,PILER-CR
CGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACA
>7.7|1740148|35|NC_017934|CRISPRCasFinder,PILER-CR
GCACACGAACTTGGGAAGGAAAGGCATAGGAGGTG
>7.8|1740213|38|NC_017934|CRISPRCasFinder,PILER-CR
CTTCGGTATTCTTACGATGGAAGCTACCACAGTAACAT
>7.9|1740281|37|NC_017934|CRISPRCasFinder,PILER-CR
GCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAA
>7.10|1740348|36|NC_017934|CRISPRCasFinder,PILER-CR
CTGCACCGGGCATGAATGAAGCCTCGGTAAGCATAT
>7.11|1740414|35|NC_017934|CRISPRCasFinder,PILER-CR
CCGACCGTGACGGTGCAGTTCGCGGTACTGTCCAC
>7.12|1740479|38|NC_017934|CRISPRCasFinder,PILER-CR
TCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACA
>7.13|1740547|36|NC_017934|CRISPRCasFinder,PILER-CR
AGGATAACAAGGCAAGGAAACGCCACGGATATAAAG
>7.14|1740613|38|NC_017934|CRISPRCasFinder,PILER-CR
TCAATCGCCAACTACAGTGAACGCTATTGCCCCCACAC
>7.15|1740681|38|NC_017934|CRISPRCasFinder,PILER-CR
CTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGC
>7.16|1740749|38|NC_017934|CRISPRCasFinder,PILER-CR
CATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTG
>7.17|1740817|37|NC_017934|CRISPRCasFinder,PILER-CR
ACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCT
>7.18|1740884|37|NC_017934|CRISPRCasFinder,PILER-CR
ATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGAT
>7.19|1740951|38|NC_017934|CRISPRCasFinder,PILER-CR
ATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGT
>7.20|1741019|38|NC_017934|CRISPRCasFinder,PILER-CR
CTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTA
>7.21|1741087|38|NC_017934|CRISPRCasFinder,PILER-CR
CAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCAT
>7.22|1741155|36|NC_017934|CRISPRCasFinder,PILER-CR
TGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTC
>7.23|1741221|38|NC_017934|CRISPRCasFinder,PILER-CR
GGTATAATCATACCAACCCTATAATAAAAATGCAATAC
>7.24|1741289|38|NC_017934|CRISPRCasFinder,PILER-CR
TATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAA
>7.25|1741357|38|NC_017934|CRISPRCasFinder,PILER-CR
AAGCCTATATCGACGTTGTTTATATGGGCTTATTTCAT
>7.26|1741425|39|NC_017934|CRISPRCasFinder,PILER-CR
TCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTT
>7.27|1741494|36|NC_017934|CRISPRCasFinder,PILER-CR
TCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTA
>7.28|1741560|35|NC_017934|CRISPRCasFinder,PILER-CR
CGGGAATTTATCGATGAGATAGAGGGGCGATTGTA
>7.29|1741625|37|NC_017934|CRISPRCasFinder,PILER-CR
TCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATA
>7.30|1741692|35|NC_017934|CRISPRCasFinder,PILER-CR
AAAAGGTCATCCATCGATCTCAGTCCTCACTTTCG
>7.31|1741757|36|NC_017934|CRISPRCasFinder,PILER-CR
GGCACGGATACAAACTCATCAGTAAAGACCCAATAC
>7.32|1741823|37|NC_017934|CRISPRCasFinder,PILER-CR
GAACCTGCCGGAAGAGATGATAGAAGACATGTATAAG
>7.33|1741890|36|NC_017934|CRISPRCasFinder,PILER-CR
GCACAAGTACGCTGCGGATTACACTGGTCCTTTCAC
>7.34|1741956|37|NC_017934|CRISPRCasFinder,PILER-CR
AGGCTTGCGACAATGCCTCTCTATTGAATCTTTATAC
>7.35|1742023|37|NC_017934|CRISPRCasFinder,PILER-CR
AATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGA
>7.36|1742090|37|NC_017934|CRISPRCasFinder,PILER-CR
CCTGGAACTACCTTCAGAAGACGCTAGGAATATCATC
>7.37|1742157|38|NC_017934|CRISPRCasFinder,PILER-CR
ACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCA
>7.38|1742225|37|NC_017934|CRISPRCasFinder,PILER-CR
TCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGG
>7.39|1742292|34|NC_017934|CRISPRCasFinder,PILER-CR
TAAGGTCATTCAAGGAGACTTTGTCTGTTACAAT
>7.40|1742356|40|NC_017934|CRISPRCasFinder,PILER-CR
GCGATTGGTTACATGATGCGATATATGGGAAAGGATTATC
>7.41|1742426|38|NC_017934|CRISPRCasFinder,PILER-CR
GGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAA
>7.42|1742494|38|NC_017934|CRISPRCasFinder,PILER-CR
CCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGT
>7.43|1742562|35|NC_017934|CRISPRCasFinder,PILER-CR
AGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAG
>7.44|1742627|35|NC_017934|CRISPRCasFinder,PILER-CR
AGCGATCTCGTATAGCTTCTCATACACTTCTTTAT
>7.45|1742692|36|NC_017934|CRISPRCasFinder,PILER-CR
CTTTCATGCTTAACAAGACTGATTCCGTATTTTCCT
>7.46|1742758|36|NC_017934|CRISPRCasFinder,PILER-CR
CCCAGATACACGCACCCAGAGAAGCCCCCATATTTT
>7.47|1742824|37|NC_017934|CRISPRCasFinder,PILER-CR
GCACCATTACTTCTCATAAATATATCCAATTCCCTAA
>7.48|1742891|38|NC_017934|CRISPRCasFinder,PILER-CR
ACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCC
>7.49|1742959|37|NC_017934|CRISPRCasFinder,PILER-CR
TTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAG
>7.50|1743026|36|NC_017934|CRISPRCasFinder,PILER-CR
TTCTTTTCCGCAATACTTAGCAAAGTATCCAATCAC
>7.51|1743092|35|NC_017934|CRISPRCasFinder,PILER-CR
AAAACAGAAAGTATTGGTTTGATGAGTCAGGATAT
>7.52|1743157|39|NC_017934|CRISPRCasFinder,PILER-CR
AGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGA
>7.53|1743226|37|NC_017934|CRISPRCasFinder,PILER-CR
TAATGATACTGCTAGCTTCGTGTATACGAAGAAATGA
>7.54|1743293|36|NC_017934|CRISPRCasFinder,PILER-CR
TTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTAT
>7.55|1743359|39|NC_017934|CRISPRCasFinder,PILER-CR
CGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTT
>7.56|1743428|37|NC_017934|CRISPRCasFinder,PILER-CR
GAAGTTTGCAGAAAGATATTGTAATGCTCACTATACT
>7.57|1743495|37|NC_017934|CRISPRCasFinder,PILER-CR
ACCATGCCAAGGAGACCATCACGCAACACCCGTTAAC
>7.58|1743562|35|NC_017934|CRISPRCasFinder,PILER-CR
GAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAA
>7.59|1743627|37|NC_017934|CRISPRCasFinder,PILER-CR
CTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATT
>7.60|1743694|37|NC_017934|CRISPRCasFinder,PILER-CR
CGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGAT
>7.61|1743761|38|NC_017934|CRISPRCasFinder,PILER-CR
GAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGA
>7.62|1743829|37|NC_017934|CRISPRCasFinder,PILER-CR
AATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATC
>7.63|1743896|38|NC_017934|CRISPRCasFinder,PILER-CR
CAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGT
>7.64|1743964|38|NC_017934|CRISPRCasFinder,PILER-CR
GGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAA
>7.65|1744032|38|NC_017934|CRISPRCasFinder,PILER-CR
CAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTC
>7.66|1744100|36|NC_017934|CRISPRCasFinder,PILER-CR
ATCACCTACCACCCGGACAACTCCATTTTCCCAACT
>7.67|1744166|36|NC_017934|CRISPRCasFinder,PILER-CR
TGAGTTATAGATATGATACGGTGCGAATTGATTTAG
>7.68|1744232|34|NC_017934|CRISPRCasFinder,PILER-CR
AGGAACGGGGTTTTTATCTATAACATTGATTCTT
>7.69|1744296|35|NC_017934|CRISPRCasFinder,PILER-CR
TCACCTACCACCCGGACAACTCCATTTTCCCAACT
>7.70|1739740|46|NC_017934|CRT
CACGCAACGTTATATAAAAAAGGAGGAAAAATATGAATAAGCTAAT
>7.71|1739808|45|NC_017934|CRT
CACGCAACTGTCCCTGGCCGCAGGGTAAACTCTGTCGGCAAATAT
>7.72|1739875|44|NC_017934|CRT
TACGCAACCTATCAGCTGTATTCTATAGAAGACGTCAGTATTGC
>7.73|1739941|43|NC_017934|CRT
TACGCAACATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAAC
>7.74|1740006|45|NC_017934|CRT
TACGCAACCAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTT
>7.75|1740073|45|NC_017934|CRT
TACGCAACCGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACA
>7.76|1740140|43|NC_017934|CRT
TACGCAACGCACACGAACTTGGGAAGGAAAGGCATAGGAGGTG
>7.77|1740205|46|NC_017934|CRT
TACGCAACCTTCGGTATTCTTACGATGGAAGCTACCACAGTAACAT
>7.78|1740273|45|NC_017934|CRT
TACGCAACGCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAA
>7.79|1740340|44|NC_017934|CRT
TACGCAACCTGCACCGGGCATGAATGAAGCCTCGGTAAGCATAT
>7.80|1740406|43|NC_017934|CRT
TACGCAACCCGACCGTGACGGTGCAGTTCGCGGTACTGTCCAC
>7.81|1740471|46|NC_017934|CRT
TACGCAACTCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACA
>7.82|1740539|44|NC_017934|CRT
TACGCAACAGGATAACAAGGCAAGGAAACGCCACGGATATAAAG
>7.83|1740605|46|NC_017934|CRT
TACGCAACTCAATCGCCAACTACAGTGAACGCTATTGCCCCCACAC
>7.84|1740673|46|NC_017934|CRT
TACGCAACCTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGC
>7.85|1740741|46|NC_017934|CRT
TACGCAACCATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTG
>7.86|1740809|45|NC_017934|CRT
TACGCAACACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCT
>7.87|1740876|45|NC_017934|CRT
TACGCAACATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGAT
>7.88|1740943|46|NC_017934|CRT
TACGCAACATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGT
>7.89|1741011|46|NC_017934|CRT
TACGCAACCTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTA
>7.90|1741079|46|NC_017934|CRT
TACGCAACCAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCAT
>7.91|1741147|44|NC_017934|CRT
TACGCAACTGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTC
>7.92|1741213|46|NC_017934|CRT
TACGCAACGGTATAATCATACCAACCCTATAATAAAAATGCAATAC
>7.93|1741281|46|NC_017934|CRT
TACGCAACTATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAA
>7.94|1741349|46|NC_017934|CRT
TACGCAACAAGCCTATATCGACGTTGTTTATATGGGCTTATTTCAT
>7.95|1741417|47|NC_017934|CRT
TACGCAACTCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTT
>7.96|1741486|44|NC_017934|CRT
TACGCAACTCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTA
>7.97|1741552|43|NC_017934|CRT
TACGCAACCGGGAATTTATCGATGAGATAGAGGGGCGATTGTA
>7.98|1741617|45|NC_017934|CRT
TACGCAACTCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATA
>7.99|1741684|43|NC_017934|CRT
TACGCAACAAAAGGTCATCCATCGATCTCAGTCCTCACTTTCG
>7.100|1741749|44|NC_017934|CRT
TACGCAACGGCACGGATACAAACTCATCAGTAAAGACCCAATAC
>7.101|1741815|45|NC_017934|CRT
TACGCAACGAACCTGCCGGAAGAGATGATAGAAGACATGTATAAG
>7.102|1741882|44|NC_017934|CRT
TACGCAACGCACAAGTACGCTGCGGATTACACTGGTCCTTTCAC
>7.103|1741948|45|NC_017934|CRT
TACGCAACAGGCTTGCGACAATGCCTCTCTATTGAATCTTTATAC
>7.104|1742015|45|NC_017934|CRT
TACGCAACAATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGA
>7.105|1742082|45|NC_017934|CRT
TACGCAACCCTGGAACTACCTTCAGAAGACGCTAGGAATATCATC
>7.106|1742149|46|NC_017934|CRT
TACGCAACACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCA
>7.107|1742217|45|NC_017934|CRT
TACGCAACTCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGG
>7.108|1742284|42|NC_017934|CRT
TACGCAACTAAGGTCATTCAAGGAGACTTTGTCTGTTACAAT
>7.109|1742348|48|NC_017934|CRT
TACGCAACGCGATTGGTTACATGATGCGATATATGGGAAAGGATTATC
>7.110|1742418|46|NC_017934|CRT
TACGCAACGGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAA
>7.111|1742486|46|NC_017934|CRT
TACGCAACCCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGT
>7.112|1742554|43|NC_017934|CRT
TACGCAACAGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAG
>7.113|1742619|43|NC_017934|CRT
TACGCAACAGCGATCTCGTATAGCTTCTCATACACTTCTTTAT
>7.114|1742684|44|NC_017934|CRT
TACGCAACCTTTCATGCTTAACAAGACTGATTCCGTATTTTCCT
>7.115|1742750|44|NC_017934|CRT
TACGCAACCCCAGATACACGCACCCAGAGAAGCCCCCATATTTT
>7.116|1742816|45|NC_017934|CRT
TACGCAACGCACCATTACTTCTCATAAATATATCCAATTCCCTAA
>7.117|1742883|46|NC_017934|CRT
TACGCAACACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCC
>7.118|1742951|45|NC_017934|CRT
TACGCAACTTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAG
>7.119|1743018|44|NC_017934|CRT
TACGCAACTTCTTTTCCGCAATACTTAGCAAAGTATCCAATCAC
>7.120|1743084|43|NC_017934|CRT
TACGCAACAAAACAGAAAGTATTGGTTTGATGAGTCAGGATAT
>7.121|1743149|47|NC_017934|CRT
TACGCAACAGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGA
>7.122|1743218|45|NC_017934|CRT
TACGCAACTAATGATACTGCTAGCTTCGTGTATACGAAGAAATGA
>7.123|1743285|44|NC_017934|CRT
TACGCAACTTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTAT
>7.124|1743351|47|NC_017934|CRT
TACGCAACCGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTT
>7.125|1743420|45|NC_017934|CRT
TACGCAACGAAGTTTGCAGAAAGATATTGTAATGCTCACTATACT
>7.126|1743487|45|NC_017934|CRT
TACGCAACACCATGCCAAGGAGACCATCACGCAACACCCGTTAAC
>7.127|1743554|43|NC_017934|CRT
TACGCAACGAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAA
>7.128|1743619|45|NC_017934|CRT
TACGCAACCTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATT
>7.129|1743686|45|NC_017934|CRT
TACGCAACCGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGAT
>7.130|1743753|46|NC_017934|CRT
TACGCAACGAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGA
>7.131|1743821|45|NC_017934|CRT
TACGCAACAATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATC
>7.132|1743888|46|NC_017934|CRT
TACGCAACCAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGT
>7.133|1743956|46|NC_017934|CRT
TACGCAACGGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAA
>7.134|1744024|46|NC_017934|CRT
TACGCAACCAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTC
>7.135|1744092|44|NC_017934|CRT
TACGCAACATCACCTACCACCCGGACAACTCCATTTTCCCAACT
>7.136|1744158|44|NC_017934|CRT
TACGCAACTGAGTTATAGATATGATACGGTGCGAATTGATTTAG
>7.137|1744224|42|NC_017934|CRT
TACGCAACAGGAACGGGGTTTTTATCTATAACATTGATTCTT
>7.138|1744288|43|NC_017934|CRT
TACGCAACTCACCTACCACCCGGACAACTCCATTTTCCCAACT

CRISPR arrays and Neighbor proteins around NC_017934_7

CRISPR arrays

The CRISPR arrays of NC_017934_7

>merge|NC_017934|7|1739718-1744360|CRISPRCasFinder,CRT,PILER-CR
CAATTCATACCACTATGGTTCTCACGCAACGTTATATAAAAAAGGAGGAAAAATATGAATAAGCTAATGTTTCCATACCACTATGGTTCTCACGCAACTGTCCCTGGCCGCAGGGTAAACTCTGTCGGCAAATATGTTTCCATACCACTATGGTTCTTACGCAACCTATCAGCTGTATTCTATAGAAGACGTCAGTATTGCGTTTCCATACCACTATGGTTCTTACGCAACATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAACGTTTCCATACCACTATGGTTCTTACGCAACCAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTTGTTTCCATACCGCTATGGTTCTTACGCAACCGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACAGTTTCCATACCACTATGGTTCTTACGCAACGCACACGAACTTGGGAAGGAAAGGCATAGGAGGTGGTTTCCATACCACTATGGTTCTTACGCAACCTTCGGTATTCTTACGATGGAAGCTACCACAGTAACATGTTTCCATACCACTATGGTTCTTACGCAACGCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAAGTTTCCATACCACTATGGTTCTTACGCAACCTGCACCGGGCATGAATGAAGCCTCGGTAAGCATATGTTTCCATACCACTATGGTTCTTACGCAACCCGACCGTGACGGTGCAGTTCGCGGTACTGTCCACGTTTCCATACCACTATGGTTCTTACGCAACTCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACAGTTTCCATACCACTATGGTTCTTACGCAACAGGATAACAAGGCAAGGAAACGCCACGGATATAAAGGTTTCCATACCACTATGGTTCTTACGCAACTCAATCGCCAACTACAGTGAACGCTATTGCCCCCACACGTTTCCATACCACTATGGTTCTTACGCAACCTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGCGTTTCCATACCACTATGGTTCTTACGCAACCATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTGGTTTCCATACCACTATGGTTCTTACGCAACACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCTGTTTCCATACCACTATGGTTCTTACGCAACATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGATGTTTCCATACCACTATGGTTCTTACGCAACATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGTGTTTCCATACCACTATGGTTCTTACGCAACCTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTAGTTTCCATACCACTATGGTTCTTACGCAACCAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCATGTTTCCATACCACTATGGTTCTTACGCAACTGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTCGTTTCCATACCACTATGGTTCTTACGCAACGGTATAATCATACCAACCCTATAATAAAAATGCAATACGTTTCCATACCACTATGGTTCTTACGCAACTATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAAGTTTCCATACCACTATGGTTCTTACGCAACAAGCCTATATCGACGTTGTTTATATGGGCTTATTTCATGTTTCCATACCACTATGGTTCTTACGCAACTCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTTGTTTCCATACCACTATGGTTCTTACGCAACTCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTAGTTTCCATACCACTATGGTTCTTACGCAACCGGGAATTTATCGATGAGATAGAGGGGCGATTGTAGTTTCCATACCACTATGGTTCTTACGCAACTCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATAGTTTCCATACCACTATGGTTCTTACGCAACAAAAGGTCATCCATCGATCTCAGTCCTCACTTTCGGTTTCCATACCACTATGGTTCTTACGCAACGGCACGGATACAAACTCATCAGTAAAGACCCAATACGTTTCCATACCACTATGGTTCTTACGCAACGAACCTGCCGGAAGAGATGATAGAAGACATGTATAAGGTTTCCATACCACTATGGTTCTTACGCAACGCACAAGTACGCTGCGGATTACACTGGTCCTTTCACGTTTCCATACCACTATGGTTCTTACGCAACAGGCTTGCGACAATGCCTCTCTATTGAATCTTTATACGTTTCCATACCACTATGGTTCTTACGCAACAATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGAGTTTCCATACCACTATGGTTCTTACGCAACCCTGGAACTACCTTCAGAAGACGCTAGGAATATCATCGTTTCCATACCACTATGGTTCTTACGCAACACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCAGTTTCCATACCACTATGGTTCTTACGCAACTCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGGGTTTCCATACCACTATGGTTCTTACGCAACTAAGGTCATTCAAGGAGACTTTGTCTGTTACAATGTTTCCATACCACTATGGTTCTTACGCAACGCGATTGGTTACATGATGCGATATATGGGAAAGGATTATCGTTTCCATACCACTATGGTTCTTACGCAACGGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAAGTTTCCATACCACTATGGTTCTTACGCAACCCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGTGTTTCCATACCACTATGGTTCTTACGCAACAGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAGGTTTCCATACCACTATGGTTCTTACGCAACAGCGATCTCGTATAGCTTCTCATACACTTCTTTATGTTTCCATACCACTATGGTTCTTACGCAACCTTTCATGCTTAACAAGACTGATTCCGTATTTTCCTGTTTCCATACCACTATGGTTCTTACGCAACCCCAGATACACGCACCCAGAGAAGCCCCCATATTTTGTTTCCATACCACTATGGTTCTTACGCAACGCACCATTACTTCTCATAAATATATCCAATTCCCTAAGTTTCCATACCACTATGGTTCTTACGCAACACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCCGTTTCCATACCACTATGGTTCTTACGCAACTTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAGGTTTCCATACCACTATGGTTCTTACGCAACTTCTTTTCCGCAATACTTAGCAAAGTATCCAATCACGTTTCCATACCACTATGGTTCTTACGCAACAAAACAGAAAGTATTGGTTTGATGAGTCAGGATATGTTTCCATACCACTATGGTTCTTACGCAACAGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGAGTTTCCATACCACTATGGTTCTTACGCAACTAATGATACTGCTAGCTTCGTGTATACGAAGAAATGAGTTTCCATACCACTATGGTTCTTACGCAACTTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTATGTTTCCATACCACTATGGTTCTTACGCAACCGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTTGTTTCCATACCACTATGGTTCTTACGCAACGAAGTTTGCAGAAAGATATTGTAATGCTCACTATACTGTTTCCATACCACTATGGTTCTTACGCAACACCATGCCAAGGAGACCATCACGCAACACCCGTTAACGTTTCCATACCACTATGGTTCTTACGCAACGAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAAGTTTCCATACCACTATGGTTCTTACGCAACCTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATTGTTTCCATACCACTATGGTTCTTACGCAACCGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGATGTTTCCATACCACTATGGTTCTTACGCAACGAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGAGTTTCCATACCACTATGGTTCTTACGCAACAATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATCGTTTCCATACCACTATGGTTCTTACGCAACCAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGTGTTTCCATACCACTATGGTTCTTACGCAACGGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAAGTTTCCATACCACTATGGTTCTTACGCAACCAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTCGTTTCCATACCACTATGGTTCTTACGCAACATCACCTACCACCCGGACAACTCCATTTTCCCAACTGTTTCCATACCACTATGGTTCTTACGCAACTGAGTTATAGATATGATACGGTGCGAATTGATTTAGGTTTCCATACCACTATGGTTCTTACGCAACAGGAACGGGGTTTTTATCTATAACATTGATTCTTGTTTCCATACCACTATGGTTCTTACGCAACTCACCTACCACCCGGACAACTCCATTTTCCCAACTGTTTCCATACCACTATGGTTCTTACGCAAC

>NC_017934|7|7|1739718-1744360|CRISPRCasFinder
CAATTCATACCACTATGGTTCTCACGCAAC	GTTATATAAAAAAGGAGGAAAAATATGAATAAGCTAAT
GTTTCCATACCACTATGGTTCTCACGCAAC	TGTCCCTGGCCGCAGGGTAAACTCTGTCGGCAAATAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CTATCAGCTGTATTCTATAGAAGACGTCAGTATTGC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTT
GTTTCCATACCGCTATGGTTCTTACGCAAC	CGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACA
GTTTCCATACCACTATGGTTCTTACGCAAC	GCACACGAACTTGGGAAGGAAAGGCATAGGAGGTG
GTTTCCATACCACTATGGTTCTTACGCAAC	CTTCGGTATTCTTACGATGGAAGCTACCACAGTAACAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCACCGGGCATGAATGAAGCCTCGGTAAGCATAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCGACCGTGACGGTGCAGTTCGCGGTACTGTCCAC
GTTTCCATACCACTATGGTTCTTACGCAAC	TCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACA
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGATAACAAGGCAAGGAAACGCCACGGATATAAAG
GTTTCCATACCACTATGGTTCTTACGCAAC	TCAATCGCCAACTACAGTGAACGCTATTGCCCCCACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTG
GTTTCCATACCACTATGGTTCTTACGCAAC	ACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGTATAATCATACCAACCCTATAATAAAAATGCAATAC
GTTTCCATACCACTATGGTTCTTACGCAAC	TATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGCCTATATCGACGTTGTTTATATGGGCTTATTTCAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	CGGGAATTTATCGATGAGATAGAGGGGCGATTGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAAGGTCATCCATCGATCTCAGTCCTCACTTTCG
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCACGGATACAAACTCATCAGTAAAGACCCAATAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAACCTGCCGGAAGAGATGATAGAAGACATGTATAAG
GTTTCCATACCACTATGGTTCTTACGCAAC	GCACAAGTACGCTGCGGATTACACTGGTCCTTTCAC
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGCTTGCGACAATGCCTCTCTATTGAATCTTTATAC
GTTTCCATACCACTATGGTTCTTACGCAAC	AATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGA
GTTTCCATACCACTATGGTTCTTACGCAAC	CCTGGAACTACCTTCAGAAGACGCTAGGAATATCATC
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGG
GTTTCCATACCACTATGGTTCTTACGCAAC	TAAGGTCATTCAAGGAGACTTTGTCTGTTACAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCGATTGGTTACATGATGCGATATATGGGAAAGGATTATC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAG
GTTTCCATACCACTATGGTTCTTACGCAAC	AGCGATCTCGTATAGCTTCTCATACACTTCTTTAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CTTTCATGCTTAACAAGACTGATTCCGTATTTTCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCCAGATACACGCACCCAGAGAAGCCCCCATATTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCACCATTACTTCTCATAAATATATCCAATTCCCTAA
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCC
GTTTCCATACCACTATGGTTCTTACGCAAC	TTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAG
GTTTCCATACCACTATGGTTCTTACGCAAC	TTCTTTTCCGCAATACTTAGCAAAGTATCCAATCAC
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAACAGAAAGTATTGGTTTGATGAGTCAGGATAT
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGA
GTTTCCATACCACTATGGTTCTTACGCAAC	TAATGATACTGCTAGCTTCGTGTATACGAAGAAATGA
GTTTCCATACCACTATGGTTCTTACGCAAC	TTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTT
GTTTCCATACCACTATGGTTCTTACGCAAC	GAAGTTTGCAGAAAGATATTGTAATGCTCACTATACT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACCATGCCAAGGAGACCATCACGCAACACCCGTTAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATT
GTTTCCATACCACTATGGTTCTTACGCAAC	CGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGA
GTTTCCATACCACTATGGTTCTTACGCAAC	AATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATC
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGTTATAGATATGATACGGTGCGAATTGATTTAG
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGAACGGGGTTTTTATCTATAACATTGATTCTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC

>NC_017934|7|5|1739718-1744352|CRT
CAATTCATACCACTATGGTTCT	CACGCAACGTTATATAAAAAAGGAGGAAAAATATGAATAAGCTAAT
GTTTCCATACCACTATGGTTCT	CACGCAACTGTCCCTGGCCGCAGGGTAAACTCTGTCGGCAAATAT
GTTTCCATACCACTATGGTTCT	TACGCAACCTATCAGCTGTATTCTATAGAAGACGTCAGTATTGC
GTTTCCATACCACTATGGTTCT	TACGCAACATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAAC
GTTTCCATACCACTATGGTTCT	TACGCAACCAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTT
GTTTCCATACCGCTATGGTTCT	TACGCAACCGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACA
GTTTCCATACCACTATGGTTCT	TACGCAACGCACACGAACTTGGGAAGGAAAGGCATAGGAGGTG
GTTTCCATACCACTATGGTTCT	TACGCAACCTTCGGTATTCTTACGATGGAAGCTACCACAGTAACAT
GTTTCCATACCACTATGGTTCT	TACGCAACGCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAA
GTTTCCATACCACTATGGTTCT	TACGCAACCTGCACCGGGCATGAATGAAGCCTCGGTAAGCATAT
GTTTCCATACCACTATGGTTCT	TACGCAACCCGACCGTGACGGTGCAGTTCGCGGTACTGTCCAC
GTTTCCATACCACTATGGTTCT	TACGCAACTCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACA
GTTTCCATACCACTATGGTTCT	TACGCAACAGGATAACAAGGCAAGGAAACGCCACGGATATAAAG
GTTTCCATACCACTATGGTTCT	TACGCAACTCAATCGCCAACTACAGTGAACGCTATTGCCCCCACAC
GTTTCCATACCACTATGGTTCT	TACGCAACCTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGC
GTTTCCATACCACTATGGTTCT	TACGCAACCATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTG
GTTTCCATACCACTATGGTTCT	TACGCAACACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCT
GTTTCCATACCACTATGGTTCT	TACGCAACATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGAT
GTTTCCATACCACTATGGTTCT	TACGCAACATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGT
GTTTCCATACCACTATGGTTCT	TACGCAACCTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTA
GTTTCCATACCACTATGGTTCT	TACGCAACCAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCAT
GTTTCCATACCACTATGGTTCT	TACGCAACTGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTC
GTTTCCATACCACTATGGTTCT	TACGCAACGGTATAATCATACCAACCCTATAATAAAAATGCAATAC
GTTTCCATACCACTATGGTTCT	TACGCAACTATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAA
GTTTCCATACCACTATGGTTCT	TACGCAACAAGCCTATATCGACGTTGTTTATATGGGCTTATTTCAT
GTTTCCATACCACTATGGTTCT	TACGCAACTCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTT
GTTTCCATACCACTATGGTTCT	TACGCAACTCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTA
GTTTCCATACCACTATGGTTCT	TACGCAACCGGGAATTTATCGATGAGATAGAGGGGCGATTGTA
GTTTCCATACCACTATGGTTCT	TACGCAACTCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATA
GTTTCCATACCACTATGGTTCT	TACGCAACAAAAGGTCATCCATCGATCTCAGTCCTCACTTTCG
GTTTCCATACCACTATGGTTCT	TACGCAACGGCACGGATACAAACTCATCAGTAAAGACCCAATAC
GTTTCCATACCACTATGGTTCT	TACGCAACGAACCTGCCGGAAGAGATGATAGAAGACATGTATAAG
GTTTCCATACCACTATGGTTCT	TACGCAACGCACAAGTACGCTGCGGATTACACTGGTCCTTTCAC
GTTTCCATACCACTATGGTTCT	TACGCAACAGGCTTGCGACAATGCCTCTCTATTGAATCTTTATAC
GTTTCCATACCACTATGGTTCT	TACGCAACAATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGA
GTTTCCATACCACTATGGTTCT	TACGCAACCCTGGAACTACCTTCAGAAGACGCTAGGAATATCATC
GTTTCCATACCACTATGGTTCT	TACGCAACACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCA
GTTTCCATACCACTATGGTTCT	TACGCAACTCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGG
GTTTCCATACCACTATGGTTCT	TACGCAACTAAGGTCATTCAAGGAGACTTTGTCTGTTACAAT
GTTTCCATACCACTATGGTTCT	TACGCAACGCGATTGGTTACATGATGCGATATATGGGAAAGGATTATC
GTTTCCATACCACTATGGTTCT	TACGCAACGGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAA
GTTTCCATACCACTATGGTTCT	TACGCAACCCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGT
GTTTCCATACCACTATGGTTCT	TACGCAACAGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAG
GTTTCCATACCACTATGGTTCT	TACGCAACAGCGATCTCGTATAGCTTCTCATACACTTCTTTAT
GTTTCCATACCACTATGGTTCT	TACGCAACCTTTCATGCTTAACAAGACTGATTCCGTATTTTCCT
GTTTCCATACCACTATGGTTCT	TACGCAACCCCAGATACACGCACCCAGAGAAGCCCCCATATTTT
GTTTCCATACCACTATGGTTCT	TACGCAACGCACCATTACTTCTCATAAATATATCCAATTCCCTAA
GTTTCCATACCACTATGGTTCT	TACGCAACACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCC
GTTTCCATACCACTATGGTTCT	TACGCAACTTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAG
GTTTCCATACCACTATGGTTCT	TACGCAACTTCTTTTCCGCAATACTTAGCAAAGTATCCAATCAC
GTTTCCATACCACTATGGTTCT	TACGCAACAAAACAGAAAGTATTGGTTTGATGAGTCAGGATAT
GTTTCCATACCACTATGGTTCT	TACGCAACAGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGA
GTTTCCATACCACTATGGTTCT	TACGCAACTAATGATACTGCTAGCTTCGTGTATACGAAGAAATGA
GTTTCCATACCACTATGGTTCT	TACGCAACTTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTAT
GTTTCCATACCACTATGGTTCT	TACGCAACCGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTT
GTTTCCATACCACTATGGTTCT	TACGCAACGAAGTTTGCAGAAAGATATTGTAATGCTCACTATACT
GTTTCCATACCACTATGGTTCT	TACGCAACACCATGCCAAGGAGACCATCACGCAACACCCGTTAAC
GTTTCCATACCACTATGGTTCT	TACGCAACGAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAA
GTTTCCATACCACTATGGTTCT	TACGCAACCTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATT
GTTTCCATACCACTATGGTTCT	TACGCAACCGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGAT
GTTTCCATACCACTATGGTTCT	TACGCAACGAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGA
GTTTCCATACCACTATGGTTCT	TACGCAACAATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATC
GTTTCCATACCACTATGGTTCT	TACGCAACCAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGT
GTTTCCATACCACTATGGTTCT	TACGCAACGGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAA
GTTTCCATACCACTATGGTTCT	TACGCAACCAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTC
GTTTCCATACCACTATGGTTCT	TACGCAACATCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCT	TACGCAACTGAGTTATAGATATGATACGGTGCGAATTGATTTAG
GTTTCCATACCACTATGGTTCT	TACGCAACAGGAACGGGGTTTTTATCTATAACATTGATTCTT
GTTTCCATACCACTATGGTTCT	TACGCAACTCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCT

>NC_017934|7|5|1739919-1744360|PILER-CR
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGACAAAGGAAAGCTTGAGAAGTTTGTGTATAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGGTGACGAAAGCACAGCTGTTTGAGTTCCTCGCTT
GTTTCCATACCGCTATGGTTCTTACGCAAC	CGGAATCCGTAAGGTAACCCCCTATACGTCCTGGACA
GTTTCCATACCACTATGGTTCTTACGCAAC	GCACACGAACTTGGGAAGGAAAGGCATAGGAGGTG
GTTTCCATACCACTATGGTTCTTACGCAAC	CTTCGGTATTCTTACGATGGAAGCTACCACAGTAACAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCAGAATCGAGAGTTTGACACTCAGTGCGTTTTCCAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCACCGGGCATGAATGAAGCCTCGGTAAGCATAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCGACCGTGACGGTGCAGTTCGCGGTACTGTCCAC
GTTTCCATACCACTATGGTTCTTACGCAAC	TCAGGAAGAGGATCGAAACGAACACAAAAGTATTCACA
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGATAACAAGGCAAGGAAACGCCACGGATATAAAG
GTTTCCATACCACTATGGTTCTTACGCAAC	TCAATCGCCAACTACAGTGAACGCTATTGCCCCCACAC
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGGTGGCAGCGATGCTAGGCATGGGTACTCAACTTGC
GTTTCCATACCACTATGGTTCTTACGCAAC	CATACTGAAAATGGTTCACTATGCCAATCGGCTAAGTG
GTTTCCATACCACTATGGTTCTTACGCAAC	ACATGGAAGAAGCAAGGAGGTTTTATGACTTCTGCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGTCATAATAGTCGGTTATAAAACCGCTCTGTGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	ATGTATGGGTGATTTTAGCTCCAAGATGCGCGCTCAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGTTTAGGAGGGCGTACAGGCTGAAGATGCAGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGGAGGGCTTCGTAGTCAACGGATAACTCCCGGGCAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGGAAGCAAATTTCTCAAATTCAGAGCGAAACTC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGTATAATCATACCAACCCTATAATAAAAATGCAATAC
GTTTCCATACCACTATGGTTCTTACGCAAC	TATCTGTGCCTTTTATTATGTGTTTAATTATATTAAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAGCCTATATCGACGTTGTTTATATGGGCTTATTTCAT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCTTGCTGATACTAGCATATGGAAAAAACTGTTTTGGTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCAGTTTTACAAAAAGGCTTATAAGAAGCATATGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	CGGGAATTTATCGATGAGATAGAGGGGCGATTGTA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCCTGGTGCAGTTGGTTCTCTTGCTGATACTAGCATA
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAAGGTCATCCATCGATCTCAGTCCTCACTTTCG
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCACGGATACAAACTCATCAGTAAAGACCCAATAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAACCTGCCGGAAGAGATGATAGAAGACATGTATAAG
GTTTCCATACCACTATGGTTCTTACGCAAC	GCACAAGTACGCTGCGGATTACACTGGTCCTTTCAC
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGCTTGCGACAATGCCTCTCTATTGAATCTTTATAC
GTTTCCATACCACTATGGTTCTTACGCAAC	AATTGGCGTTTATACCTCGTTGAAGATCATCAGAAGA
GTTTCCATACCACTATGGTTCTTACGCAAC	CCTGGAACTACCTTCAGAAGACGCTAGGAATATCATC
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTTCTCCGCAAGCTCATTAAACTTACTCATCTCAGCA
GTTTCCATACCACTATGGTTCTTACGCAAC	TCTATCACCTCCGCCACGAGAGCAGCCACTCTCAAGG
GTTTCCATACCACTATGGTTCTTACGCAAC	TAAGGTCATTCAAGGAGACTTTGTCTGTTACAAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCGATTGGTTACATGATGCGATATATGGGAAAGGATTATC
GTTTCCATACCACTATGGTTCTTACGCAAC	GGCTGTTCTGTACCAGTCCGAGGGAAGGGATCCAGGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CCTGCGAATGTTCGGGGCGATCTTGACCGAACATGAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGAGGGTTGCGATGGTAAAGGATGGGGGTTATAG
GTTTCCATACCACTATGGTTCTTACGCAAC	AGCGATCTCGTATAGCTTCTCATACACTTCTTTAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CTTTCATGCTTAACAAGACTGATTCCGTATTTTCCT
GTTTCCATACCACTATGGTTCTTACGCAAC	CCCAGATACACGCACCCAGAGAAGCCCCCATATTTT
GTTTCCATACCACTATGGTTCTTACGCAAC	GCACCATTACTTCTCATAAATATATCCAATTCCCTAA
GTTTCCATACCACTATGGTTCTTACGCAAC	ACTCTTTCAATCGTTGGCATTGCTACCCCTCCGATTCC
GTTTCCATACCACTATGGTTCTTACGCAAC	TTAACCAGGTATCCGATTCCGCCCCCCGTACTTTCAG
GTTTCCATACCACTATGGTTCTTACGCAAC	TTCTTTTCCGCAATACTTAGCAAAGTATCCAATCAC
GTTTCCATACCACTATGGTTCTTACGCAAC	AAAACAGAAAGTATTGGTTTGATGAGTCAGGATAT
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGTTATGTTCGGGGTATTGTTCCTGGTATGCGTAAGGA
GTTTCCATACCACTATGGTTCTTACGCAAC	TAATGATACTGCTAGCTTCGTGTATACGAAGAAATGA
GTTTCCATACCACTATGGTTCTTACGCAAC	TTAAGACAAGCCCGCGGATCTTTATCTAAAAAGTAT
GTTTCCATACCACTATGGTTCTTACGCAAC	CGAGAGATGACAGGATTGTCCCTGTCCCCGAAGAAATTT
GTTTCCATACCACTATGGTTCTTACGCAAC	GAAGTTTGCAGAAAGATATTGTAATGCTCACTATACT
GTTTCCATACCACTATGGTTCTTACGCAAC	ACCATGCCAAGGAGACCATCACGCAACACCCGTTAAC
GTTTCCATACCACTATGGTTCTTACGCAAC	GAGAGAATAGTCTCTGCTAAGAACGGTCTGCCAAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CTGCAGATCATGAAGGTACTGATCTTGAGGCTGTATT
GTTTCCATACCACTATGGTTCTTACGCAAC	CGGAAATCCCCGAAGGTTGTTTGTGCTAATTGAGGAT
GTTTCCATACCACTATGGTTCTTACGCAAC	GAATCTGTAAGGTGGCTTGTTTACTATGTTCTACACGA
GTTTCCATACCACTATGGTTCTTACGCAAC	AATGTTGAGGCAGGAATTTCCTTTCCTCAACAAAATC
GTTTCCATACCACTATGGTTCTTACGCAAC	CAGTTAATACCTCGAACTACTTTATTAGCCACGTGAGT
GTTTCCATACCACTATGGTTCTTACGCAAC	GGATACAACGAAAACGGTTTCTGGATTCGCTGCTTGAA
GTTTCCATACCACTATGGTTCTTACGCAAC	CAAGCAAGGAAGTTATAGAGGGTTTGGAAACTTGCCTC
GTTTCCATACCACTATGGTTCTTACGCAAC	ATCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC	TGAGTTATAGATATGATACGGTGCGAATTGATTTAG
GTTTCCATACCACTATGGTTCTTACGCAAC	AGGAACGGGGTTTTTATCTATAACATTGATTCTT
GTTTCCATACCACTATGGTTCTTACGCAAC	TCACCTACCACCCGGACAACTCCATTTTCCCAACT
GTTTCCATACCACTATGGTTCTTACGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|213662
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	unknown	unknown	gnl|CDD|376386
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	unknown	unknown	gnl|CDD|394873
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	unknown	unknown	gnl|CDD|373093
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1e-117	387.6	1.4
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.7e-39	130.6	0.0
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	6.8e-56	184.3	0.0
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	4.9e-48	158.7	0.1
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	7e-42	138.0	0.2
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.8e-18	60.8	0.1
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2e-89	295.4	0.0
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	9.1e-70	230.2	0.1
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5e-29	95.1	1.3
NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	1.1e-153	507.1	2.6
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	9.7e-51	168.1	0.0
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	5.4e-21	69.9	0.0
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.6e-38	126.5	0.0
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	3.8e-72	238.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.86001e-139
NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.25246e-28
NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	2.31508e-57
NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.1734e-41
NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.1585e-47
NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.28536e-17
NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.35605e-81
NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.41289e-68
NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.20607e-65
NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein	gnl|CDD|376386	pfam00771, FHIPEP, FHIPEP family.	0.00206316
NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.5233e-44
NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.0725e-18
NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.73895e-38
NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein	gnl|CDD|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	1.3522e-17
NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein	gnl|CDD|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	1.96283e-30
NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40039e-29

Protein sequences

>NC_017934.1|WP_014731180.1|1735151_1735304_-|hypothetical-protein
MSLPYKLFIGIIALAGVLGILGLISGTWSGLIIGLLCALFAWTMDQNKKK
>NC_017934.1|WP_014731179.1|1734409_1734931_-|hypothetical-protein
MVYSIKRRDDGSFVAYMKGVLFSKDGDSWYLPSPEEFKEIGDLEVNGTLVFEKTDEIEDDSPKFSDLCGLPLLSLEEALLSAGLAFETTGNNIAISCKDNHKLEVLSYEDLLLIVFCPECKTGILNFISFLDATGVGNDLFQPDCNYDEVWLPMNEETYQKTVEALSSVINVE
>NC_017934.1|WP_014731178.1|1734051_1734315_-|CRISPR-associated-endonuclease-Cas2
MWVIIVYDINEKRVAKVLKYLRRYLNWIQNSVFEGELTYAELKKVKSGLKRLMNTQEDSVIIFSSSLSNDYKKEIIGLDKAKETQIL
>NC_017934.1|WP_081484622.1|1732823_1733954_-|CRISPR-associated-protein
MHFEGRQGETIINTIICTVGASLRKLCNMTSSGITDRLLNLNDPIGNREFGAEINSLASILSQSVLSSRDYLYFLTSDTEEGKKIGDALKLFFDCSKDMSFKNVSVNAISDLDDSRPDDFQNKGLRNLVKRIAEIYKHHMDNLLINATGGYKAQIALSLAFGMGVKIPVYYRFETFDGVIKLPPMPLSLDVELWLENKGLLDTLEMNSVINEKDLEREYDYRINFSSLPAEIKLLIDREQDSVGHMLSLSPMGEVFVQACRLSLGKLDVEASLKDSSVPIENRLKKSSKEAHSNKMISDNQSFIDKLVSIPFIEEVLVRGSSQKFDRNEFVCKQFGEIIKARYSTRGGTLYMEIRTTARNPYELEKAVEEIKRLLK
>NC_017934.1|WP_014731176.1|1731572_1732808_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MQKSTFVCKTITPMLSRSMYSKTGKSWRFELRPQSVKGVMRFWFRALVPCVIDPNWLDGSKKPFAALHYLEGLMFGSQEKKSPFSLTVSYGDDIEESVNTLVESSDRFFRNALFGTYELKGDNPSFSYMMPDQSFTIRIRYSSSILPVQKTVTDSLMSLISNYSGFGAKARDGFGSFAISKAKGVEEDSVGEQYSTSKSLLLKMISELDPDERKFRLINEEPNLYPYDFPTLARSREMNSLIKSRSWKDIIGALTGQRTKDGDPVSKYSRLKLNELRKYGQPGDNLEPLRAAYFERTAPSREFVMRTSIMGLPIIYQRFGEYPGTTGKGTATVSNSNNSSGRKASPIFISVHKALNNSYFARILLMASKISPDRDNNDRPVIYAIVKGEPYPILGNENFEELWNLLKGVIE
>NC_017934.1|WP_014731175.1|1729203_1731576_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNWEKKIIALMHDPLFKAMDIRGHESSSAEILKALGISPDKVKEEDWIASAMDRLAIPWEKSNQVRVSLDDTGGFVHSLSSSKLDVLKHLPNLDSARSQFMANLRVISEGNKKENLFHALWWQLPDMMEGSAFLPADTRIPNHSIVDHLDSTSSLAGTIENGKIKASLISVSVGPVQSFIAAARKTMDLWSGSYLLSLITYKGIEYVGQKYGFDCVIFPSLRNIAFVKKSLSEWGVKFTVDSKVPKPSTRVASLPNRFVAIVPTSEVKETLKNVEKAIKDGWKEIYSVSLKAGKPLDETNLQMQLDTFPEVFTTSQELIEIENAKEIISNLYNDSGIKDEIDNLNSLSTQHGAHKPNAGALYSYSYRLLRSRADARKTLRTFSHFTDNSSVNGKTLQGDQFNGDMKAIFKLKDGEKTDHLNAVNAVKRLYASEINEKFPSVDEFAGKNEQKFIEFTGNMPESYKNSYYAILLMDGDRMGKWIGGEYAPQITEVIAEPLRTAIVSSDLPTKMKDYILMRKTVQPAYHRTVSRTLNIFSSLVQLAVEKHGGELVYSGGDDVLAFLPAVSVLECADEIRRMYSGTGDVELDSPAGKLQFKDEMLWIKGKPHSPMMGWKATMSAGIAVVNKKFPLSQALRIARESEHIAKDGLGRDSFVVSIVRRSGQISRNGAKWSTKDGSFNTIKSLREMIKKMDSSGFGSRSLRKLFGDDLILSNDEYVNKYIPYVLKKAGSRKEDDGSFERMFKNYFRKMIDLEKGIEAITEENSDLFEARKRAVDLLLVQDFLLRGDGR
>NC_017934.1|WP_014731174.1|1728151_1729207_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLNAVYFTPEDWICFRESTVFQSGGDAKTGLPKIETFLGAIKTALIKKAGENPLNLSSELKEIVGDSENPGSLRIWGPFIFNQVNSEIRHYFPSPNGIYRVEEGGEFKLMMPHCSVETEINGKTLKLTWIPSSVEGIETFDGSLIEMNEVSNLQRKLPFSILQSKEISQKLYQVESKVGIALERERKNAEESMLYTLSYYRFKPGAGFFVFADEYTAKTISGLSNVFIGGKTRAAEVDVNTIETEIFNVSQSSKTAICLVTPSVFSNGSLPSDMKIAGCDIKSANIQRKIAVSGWDLAKNQPKPIKHYVAPGTVYYLEGTLDNIQNISSESQDFGYGKYFTVDWDYIGRD
>NC_017934.1|WP_041928153.1|1727348_1728155_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKLKAFCLYAESQIHAGTGADVGIVDLPIQRERTTGFPVIQGIKGALRASGLIKDDTVFGSKPSKGGEENTDAGKISFSEAKILLFPVRSAEKMFVWVTCPIVLRRFARSTGKKLEVPDVQNGKVILADQNFNEKSLMLEELELQFEKNPEVASIAAFLSSCAPDSYMATKLKRDLVLVSDDLFAKIVKTMTEVQPRIRIDEKTGIVVSGALWYEEYLPQDSVLYFTARETVYSKGSESKLSELDEKTMIIGGKETTGKGFVFVKEVV
>NC_017934.1|WP_049794053.1|1726998_1727349_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MPSLNDWAKERVSSILGKCEKVQKSYKSEIKGLGSMLLQNGLYGTIAYYKVRDKDSSKEILADLSSLLSERMEIADVTEMNPINDLDYIKAQTIVLEAVKWLRRYADILIEGEDNG
>NC_017934.1|WP_014731171.1|1726250_1727006_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVDPKTIANRTIKNSSLNYDKLFPISKHSMTDTSQLSSLLQILMNRFSYCDRDSVRSLLERRDRIVTSFRKVLDRELQTKKYLMVGSGCPSIFDNGFTLMRNYGVPYIPASAFKGAFSHYVSQELEENSPLKQNFKFLFGTGEGDDNIKGALIFMDVIPKTYSLGIDIINNHFQPYYSDDKNEKAPNDYYDPVPVQYLVIANGSIFRFSVLEKEKIEDNLRKEVSRELINFLGDFGLGAKTSYGYGLFKEV
>NC_017934.1|WP_014731181.1|1745048_1746032_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKNFYLFASGQLSRKDNTLLLEREGRRKFIPIEKIESISTFGEIDLNTHLLSFLSKKEVALHVFSHNGWYSGSFVPRKQKVSGKLLVEQIKTFLDPIKRLKLSREFIDGAMHNMLRVLQRSSSKIPGYKDKIEGLKNTRERLQNTTGVNSVMAVEGAFRQYYYPILAGLTGQEFVTRIRQPPLGILNCMISFGNSLLYTRTLSKIYQTQLDPTVSFLHEPCEMRFSLCLDISEVFKPVIVDRLIMTLLNKAIITEDDFDKEMNSTLLTNEGMKKYVEHFEKFMEETVFHPTLKRKVSYNTLLLTECYKLIRSILSEEDYKALHMWW
>NC_017934.1|WP_014731182.1|1746043_1746553_-|CRISPR-associated-protein-Cas4
MEITERQPRIGGNAINYLHYCKTQLWFFLHNISMESTSESVQLGKLLQEEYSQGEDKDIVIDEISLDILRNTREIVEIKYGKEVREGHIYQVKYYLYYLKHKLGLHEFTARLTYPRAKKMIMLSLTEEDEEQIRRDLDEIKTIFNLDNAPLPLFKEGCKGCSYFDLCFS
>NC_017934.1|WP_014731183.1|1746552_1748607_-|CRISPR-associated-helicase/endonuclease-Cas3
MSLAKPGVSLVEHTERVLDYAHSYLDQNKIALKNTNLDPKQISEAILTACAFHDIGKGCVEFSFDKKGFSHSLASAQIAMASLKESPIKNYILQSILGHHGSRFKDSFSSLEFQRQQATPNLELVNEFKEIKDYAKGHFRIELPDLDLQIPSPRELLKRLCNFFFGAPRDRRLYFLIQGILNLADWSASAKKSLSSASIKLDSRPLRTFQAEASTGKDTIILAPTGRGKSLAALVWTKSTGREKSTLFLPTVTTVEAMYKRYTEEVSDKTGLVHGNIAYYLYSNEGYSEDTRDRIFWMKAFDNPINVATLDQLLLMSLNWGRWEPKIVNIVNSAVIFDEIHASQPYTFGILLESIKMLNAMGTPVCVMSATLPSYMIQKLKEVLDYPVIVRDYEGESLRRITISHLEDVDPVEETKRQHKKGKKAILCFNTVKKATEAFKTLSDKIPDKEIILYHGRFNLEDRERILSRITGDSPPRIIVATQTIEISLDISYDVLITEAAPIDSLTQRFGRVNREGTTPIGEVMIFPQNENSYSVYNKNLVAKSLGLLKAHQTPSGLELREMMEDLLSEIENIEEEISAGKASWQFVREMNFQIYSMSIDQRLADDLIRRIPYKTIEVIPAEFRNDNSGKMQKLGKLVKVPVRDVIGRLEKDDDGFIYAPIIYDPSFGYLGPKEDEGSIVEGF
>NC_017934.1|WP_014731184.1|1748611_1749307_-|CRISPR-associated-protein-Cas5
MLVLQISIKGYTASFRSPASMNYQESLPFPPPTTITGIIGAATGREYFEAQNYCRDLSFGVHIQENEGIAKDAWAIKKVKDGGRSIGKAVVIREVLYQPNIRLLIVGPETKLKEIKKAISDPCFPLSLGRDDEFITFIQSELETAERVERSVIHNTVVKGDLQGKINITALNEGSIPHFKTYWLNSEFDRDKRNPKARRPKNRSPYTYISEPVEYSGEAVDVSDTVFPLWR
>NC_017934.1|WP_041928157.1|1749352_1750264_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MHPHRMEVKRLQIKCLSWGSISKVTMGNPNAGFTEGNIQTAKKIVAPDGSAFNYVSGQCQRHGLRERFAEIGEALSTPVDGEVETTLGDPLNYIDDDLFGFMIAVTGDNRKRTSPVRIAPLVSLFPYRGDRDLLTKTRKASDKGGNMVETEVYSAYLRGGGLIELDRVGKFDPSEIKETTLEIQKEERLRRLNLFLDSMMTLWTGGKQTNILSDISPKFIAFAFQTVKLPFLLESVSCDTKGKINAETLIDSITNYSSIIDRVIIGTTKVLDASALDAGVPETVEVLPMTDAFSRVKEILSTI
>NC_017934.1|WP_014731186.1|1750223_1751525_-|hypothetical-protein
MRVHIRSFWQMAGAVAIKRYTADCTITGNLFETQTPKKTIFENALKDMLNKNGKPWAPNLRPFLKQYTVLDKVSKILEENKIGSKVCSLCGSRVSTLEKLSMLGDPLSVKAENFQSFFSFGSGSGEVCLNCQFLGMMAGLALFYTSYKDGQDYVITYLFPESDTLESTYNTFLWMKDLHEPGSWRNLKVKARFYPQEPYETLLLSLHTLFEKTRFIPRSSFKVMQVSNTGRNNSFLNFDSFERVEELTTFFENVETLGGDFSKFMDSLVIPGSPSADVSRREEISRMILSFKPLEERLQMIIFDFDYPVHSIYEVIVASNTMKGVNGLDQMTIDLSKKAGEVIGNAVFEAQSFGDLYSLRNSRSLEDLLLTLADLEFKYAKEDWKIRIPEEFIRILNEESWKKPKALLVIFAVNKYLSRHYASSQNGGEKIAD
>NC_017934.1|WP_014731187.1|1751541_1751715_-|hypothetical-protein
MEDERDFYEDDCLDEDEGFGLEGSACATCWCKGVFCDCCGCTIQEGRNVCENCEDNS
>NC_017934.1|WP_014731188.1|1752367_1752517_-|hypothetical-protein
MKPNELGAPRNPTNIAQAIMLVVKVGLEVFDAACHIAVQYKKTKEELSK
>NC_017934.1|WP_014731189.1|1752600_1753290_-|macro-domain-containing-protein
MITVYKKSVFAAFEEENVPVIANTVNTEGVMGAGLALEFKLRFPSYFDNYRERCSHEGPLPGSAWIFRGDIFPRIISLFVKEDWKMPSKISWIRSSLKRAEEIITESNFERVALPLAGAGKGGIDPQTSENITREVFESSKAEILLCLDKSPSKNEESMIKQLRAMSEYELKCLTLRPSIIKRLLDKREDVTRFREILDIRGIGIKTYSILFNALISREPGHDNQLNLF
>NC_017934.1|WP_014731190.1|1753294_1753885_-|DUF4433-domain-containing-protein
MVTSSNPLQAFGVKHLYYLSPVKNIPSILEHGVMSKMAVETLEIPYDDYSDQTVQTIRERKSLHEYVPLFFNTRNAMTFRYQKENRDFAILRLNSDLVTHYDCLVSDRIAACSDAEIYTLSEPALKKINIEVVLSTRNFYDNWLLKKRLGAEILVKIDMIEPEWIECIILDRTAEKIKGISIRQLRDSGYTYYFEG

Crispr_ID: NC_017934_8

• CRISPR_ID: NC_017934_8
• CRISPR_location: 2055189-2055273
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017934_8

Consensus_repeat	Method
ACGAACAATGAGTAAACAAGCACCGA	CRISPRCasFinder

spacers of NC_017934_8

>8.1|2055215|33|NC_017934|CRISPRCasFinder
AGAGATCTTACCAGAAGAACACTGAACGGAATC

CRISPR arrays and Neighbor proteins around NC_017934_8

CRISPR arrays

The CRISPR arrays of NC_017934_8

>merge|NC_017934|8|2055189-2055273|CRISPRCasFinder
ACGAACAATGAGTAAACAAGCACCGAAGAGATCTTACCAGAAGAACACTGAACGGAATCACGAACAATGAGTAGACAAGCACCGA

>NC_017934|8|8|2055189-2055273|CRISPRCasFinder
ACGAACAATGAGTAAACAAGCACCGA	AGAGATCTTACCAGAAGAACACTGAACGGAATC
ACGAACAATGAGTAGACAAGCACCGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_148270023.1|2063024_2063222_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_173362784.1|2042972_2043851_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_017934.1|WP_014731359.1|2046471_2047797_+|hypothetical-protein	unknown	unknown	gnl|CDD|379779
NC_017934.1|WP_014731361.1|2050866_2052339_-|Rne/Rng-family-ribonuclease	unknown	unknown	gnl|CDD|273254
NC_017934.1|WP_014731364.1|2053619_2055131_+|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl|CDD|223679
NC_017934.1|WP_014731366.1|2055832_2056036_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|224393
NC_017934.1|WP_014731355.1|2042157_2042976_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_017934.1|WP_014731369.1|2057565_2058807_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_041928195.1|2060052_2061009_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|173926
NC_017934.1|WP_014731357.1|2043869_2045120_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270451
NC_017934.1|WP_148270021.1|2047842_2050170_+|hypothetical-protein	unknown	unknown	gnl|CDD|238362
NC_017934.1|WP_014731373.1|2062437_2062788_+|DUF3147-family-protein	unknown	unknown	gnl|CDD|181745
NC_017934.1|WP_014731358.1|2045137_2046115_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_017934.1|WP_014731370.1|2059112_2060006_-|MORN-repeat-protein	unknown	unknown	unknown
NC_017934.1|WP_014731363.1|2053069_2053531_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240030
NC_017934.1|WP_014731372.1|2061148_2062327_+|MFS-transporter	unknown	unknown	gnl|CDD|340883
NC_017934.1|WP_014731367.1|2056237_2056540_+|hypothetical-protein	unknown	unknown	gnl|CDD|223609
NC_017934.1|WP_014731374.1|2063693_2064464_-|metallophosphoesterase-family-protein	unknown	unknown	gnl|CDD|378975
NC_017934.1|WP_014731368.1|2056988_2057459_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731362.1|2052440_2052974_-|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl|CDD|379821

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_173362784.1|2042972_2043851_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.22794e-60
NC_017934.1|WP_014731359.1|2046471_2047797_+|hypothetical-protein	gnl|CDD|379779	pfam16153, DUF4861, Domain of unknown function (DUF4861). This family consists of uncharacterized proteins around 400 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown. However, in many instances the domain lies upstream of a glycosyl hydrolase family, usually family 88, so it might be involved in carbohydrate binding.	0.000213826
NC_017934.1|WP_014731361.1|2050866_2052339_-|Rne/Rng-family-ribonuclease	gnl|CDD|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	4.4545e-130
NC_017934.1|WP_014731364.1|2053619_2055131_+|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl|CDD|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NC_017934.1|WP_014731366.1|2055832_2056036_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	1.34132e-21
NC_017934.1|WP_014731355.1|2042157_2042976_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.42746e-75
NC_017934.1|WP_014731372.1|2061148_2062327_+|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.45237e-33
NC_017934.1|WP_041928195.1|2060052_2061009_+|GNAT-family-N-acetyltransferase	gnl|CDD|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	7.358e-07
NC_017934.1|WP_014731357.1|2043869_2045120_-|extracellular-solute-binding-protein	gnl|CDD|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.15666e-57
NC_017934.1|WP_148270021.1|2047842_2050170_+|hypothetical-protein	gnl|CDD|238362	cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system.	0.00102092
NC_017934.1|WP_014731373.1|2062437_2062788_+|DUF3147-family-protein	gnl|CDD|181745	PRK09272, PRK09272, hypothetical protein; Provisional.	8.0769e-28
NC_017934.1|WP_014731358.1|2045137_2046115_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.06167e-78
NC_017934.1|WP_014731363.1|2053069_2053531_-|NUDIX-domain-containing-protein	gnl|CDD|240030	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.65336e-17
NC_017934.1|WP_014731367.1|2056237_2056540_+|hypothetical-protein	gnl|CDD|223609	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only].	0.000121174
NC_017934.1|WP_014731374.1|2063693_2064464_-|metallophosphoesterase-family-protein	gnl|CDD|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	3.33102e-25
NC_017934.1|WP_014731362.1|2052440_2052974_-|ribosome-associated-translation-inhibitor-RaiA	gnl|CDD|379821	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus. This domain often occurs at the C-terminus of proteins containing pfam02482.	9.00072e-25

Protein sequences

>NC_017934.1|WP_014731364.1|2053619_2055131_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MRYSRVRTVTTVGLKVLDVLVELDIDSRAVIQEMDIVGLGDTVIKESKKRVKSAVKNSGIELPNGRITVNLAPSDVKKEGSYLDLPIAVGLLKATSKINADLSDFVFFGELGLDGSLRRVRGVLPILLSLSRRAKGMKIVLPAPNRQEASIVDNLTIFTADNLNDLVGFLNGYIEKSPIAYSQPELGNVSGPDMSEIKGQEFAKRASEVAAAGGHNISLRGSPGCGKTMLARRIPSILPPLTMEEAIETTMIYSVAGLLGEKGLIKERPFRSPHHTASTTSIVGGGNDAKPGEISLAHNGVLFMDEFPEFRRDVIEALRQPLEDGVITVARAKLTATYPARFMMVAAQNPCPCGWYGDKTRECTCSWYDIQRYNRKISGPMEDRIDIFVDMPRLDFDKYMENSTTESSDEIRKRVIAARKRQSERYEGMSIFSNSQLGHALLKEYVPLDTASRSLLSAAMDKMKLTARAIDRVLKVALTVADLEESKVEARHIAEALQYRRKT
>NC_017934.1|WP_014731363.1|2053069_2053531_-|NUDIX-domain-containing-protein
MKNTHRIKVRALIVKDESVLLVRHEHHDRPPFWCFPGGFVESDEDLFSAIKREIREETEVVVSPRSVIALQEFKRESLLEVIFSCDYVSGKLKLGSDPDNPGIPTLVDAKWVRIDELDRFKILPVQLASLFKNSWDNLCSVELFQIETMREVP
>NC_017934.1|WP_014731362.1|2052440_2052974_-|ribosome-associated-translation-inhibitor-RaiA
MDYNIYSKDVTVTDSMKDYIDKRFSKVSKVVNEEKLISMDLRLSKERAFYKIEATAHLPGVMVRVEEKGSDFYTVVDSSSDAFERRIKRFKERTRYKHKNGFKENLDSIPSKFEEDHSTMITRRKKFTIKPMTEEEAVLQMEMLGHTFFVYRNIDTDEVNVLYTRKNGSIGIIEMTE
>NC_017934.1|WP_014731361.1|2050866_2052339_-|Rne/Rng-family-ribonuclease
MARIQNNRTQTIVFSRIEDEVRIASLDGDQLEEIFFEDMDSESVTGNIYLGKVENVVPSLEAAFVNIGIGRNAFLRFKDASGQPKLEKNNKVLVQVSKDPIGSKGPQITLKVSIPGRSLVYTPFSKHIGISKKITDQQERQRLTAVAKSTLENKEGVIFRTAAFGVGDETIKEELESLRTNWNQICETFRRSRKPKILYEEPSFVEYILRERLTENTKEIVVDSEELWHDVVAGISKFKSGFKPVVRYVEGDAFASEEVYEKMKILYTRMVSLPGGGNIYIDRTEAMTVIDVNSASNVSGNDVSETSLNTNLEAASEIARQLKLRNIGGIVVIDFIDMKSDEDRQKIISSLTGEFKKDKARTMIMGFTRLGLLEMTRKRSSAAIGSKLYSSCPICKGTGRIESPRAVYQRLLKDLARGFEDETISSATVQVYQNMSGILTPENQKNLAKSLKREVSVGFTWPIPTSYEIKFAKKQDKPKRTRRKTKKESS
>NC_017934.1|WP_148270021.1|2047842_2050170_+|hypothetical-protein
MEVLMKRALIILVLLISLMLLGIEVQINLDHLEFLRDHFVVEGESVIGYWIYADRLPDGNYRHADAQGEGVTCVDDVARAAVLYLRLFEISGMEQHYDRAKEALEFVLSMQDSDGDFYNFVFEDGSINRNGPTSRKGGNWWAARALYALAKGARVSQNLDPEFSMRLADAAQRCFRKIIGFERDGLIQGYTDLSSVVLLGAAELYSMSNDVLLGGFIKRCAAALQSKVIQNEDSIFNGLVDESSPSEPRYFWHGWGSRQLEALAVAGEILGDDSLLEISTESFKQSSLLLINAGPLYSISSYLQLFPQIAYAAESAISAGFRLYHLTGDRDIAAITALLGSWFLGVNKLNQSMVGKNGEGFDGLEFSHVNKNAGAESTISMLLSLERIKRLPEEYGDLFSAAIEVLTPVVVLEAESMRAGLSESEIIQSTGVSGSAVTKISGAFSLRQPVTLVEASYSVFAAINEARTNEVVFTLRLGESKSEKTVKIEEKTVQKLGVLKGNGKETTLTVGGKLSEGSFDIDQIILVPDIVAVYLVEDDVSIVFNFKGCSEFDEGVSVIDGRVFEREKSVLQVPVLPVSLIEMNGFVHLDLLKYFDNNGIATSDERKTANFDNPQGLFGASYISSELEKAIDSGSLAVEDTEFMVNVDGNDNFRLTGQALTFSAEMFDKICILGAANHGDYTGEALLIYEDDSQQVIPLSFSDWCGGPSTGEKIAFEFSGRYDNTGNTERIKCMLYYRCVDLLEKPLKGIVLPQMPNVHVFAISLSRAEPGSQEE
>NC_017934.1|WP_014731359.1|2046471_2047797_+|hypothetical-protein
MKRFLVLFFIVFSVFSVAETVRVPVSVSSFTGEPIAVTISMSEILDLVGVDFDANWDSLRVVQDGEELPYQIDDTDLNGKLSSGDVMAFLITGPAEITVTDDFDILPPEFDAVGKVVEEEGQWLIEIGEITAVANSKGLVKVTGFGDVEGTIVDELGIVRMSGYVGSTYYVDGEYGRHEEKTSGDFIVKEATVLPAGPVGITVVSTLEAQPFLGITQKIITTLFSNGDIISHNTFEFATYAELMKLQIMATRVLTDAAEDTVHTLPVFRRLLWADQLNITPLEYWLDRNAIMFSGNKPYIVFPAVDSMRPLWWGATYIFASQESWRANYSQSLKTGVAEINPEVPVVVADYEEWMGGLTWVYESREFRDGYFEWMPGEIDIFESTKDYVSSNWEDYVKHFVAGDVVSFKRVYSIYSADSIEDSIEFVEMKKSEIQSLKIGE
>NC_017934.1|WP_014731358.1|2045137_2046115_-|LacI-family-DNA-binding-transcriptional-regulator
MSAKLSDVAKLAEVSTATVSRVLNKSGYVSKKSREKVMLAVEELEYKPSKVASFLASRKLAFNIGIVAGKRLFRVLSDQSDQFYTIVLKGIEEFFAGNNMRGSLVPSNNFSEDYDGYLLIGGEITEEDIKKAKETKKPVVLIDQYLAGVKVDCVVSDGYDGAIYGMKKLISKGLKKIVNIHGPLSHFGFKDRFDGYISAMEGAGYLPKAYEYDEDNDNMSAIIDLLLSRYGLPDAVFGCNDTAAIRAMEELQARGIKIPEEVSILGFDDIVNSSATTPSLTTFKIFKHEMGVVGSRRLQSLLIGNEPRPTKISLFTEFVQRESTL
>NC_017934.1|WP_014731357.1|2043869_2045120_-|extracellular-solute-binding-protein
MKRLILLTLFSCLFVGLFAVELVFWTAPNPLQESFWKEVVAEWNENNPDIQIKWSTIPAAGTSEEAILTSIASGRMPDICTNIFSGFAAQLIEADILIPLNSFPDFWELMEQRKMTSIVENWKFGDNYYVLPIYSNPIMMWWRSDILKELGYDRPPRTYSEIYEISEKYSVPYEKYGALVVMGRNWYDRWYDFITYYYAASEGAPYLDVEKARALFNNETGEKVVTFMDTMFRNNWTAVDLGSNPFYFGVVLGGIFGPWEINQARNLFPDVFDHITIVPPPVPDDYPEDKPIYTFADTKGLVMFATTKHREAAWKFIKWVYSDIEKDRKWMEFTNLPPAREDLLTNPIFQEYMEDNPKFAAYASHVAYAVPPALTTKTVEVQEILTTFLIEQIMYGKSTPLDALKDSATRVRRELF
>NC_017934.1|WP_173362784.1|2042972_2043851_-|sugar-ABC-transporter-permease
MRKRLKTIDAIKGWSLSGGYLVYTAIFWGYPFVWLVILALSKWNYFTPRKFIWFDNFIELFQDEMFWRVFFNTFNFMLYFIPMVLGLSLLFALGLKRVKLFRTFFILAFLVANVSSGVAYSIIFQKLFAINGPLNGLTRAIFGITVPWFSSPQLATLSIAIMVTWKFIGYYGLILFSGLQAIPESLYEAAELDGAGKMTKFFRITLPLINPSIVMVLVLSLTLTFGIFTEPFLITGGGPMRTTYTFQMLIYTTAFQKINPGYASTLAIVVALLSYGCVLLTRKLIEREVEIV
>NC_017934.1|WP_014731355.1|2042157_2042976_-|carbohydrate-ABC-transporter-permease
MKKVPTIILYVFLFAASILWIYPYVWMLLSSFKPTNEIYSGFLPSQFTLDNYRFILEAADKMERPFIQALGNSIFISVTVTLGVLVSSALVGFALSRLNFKGRNAVFNFIIFQMIFPGFLFIVPLYVLIKNLGLIDTRTALILPSLVSAWGVFMFTQSFRAVPNEYLEAARMDGANDLWIITKVLVPLTSSTVSIVGLFTFIGIWDNFMWPLIVVSDYSKMPLSVLLASFNMQYGSYLGPVLAGSVLQTMPMVVIFLVFRKYFLQGISMSLK
>NC_017934.1|WP_014731366.1|2055832_2056036_-|helix-turn-helix-transcriptional-regulator
MKNRMKEFRFKNGEMTQDNIARMAGVSRQTIIAVEKGKFKPSVKLALKLANILHCTVEELFELEEGD
>NC_017934.1|WP_014731367.1|2056237_2056540_+|hypothetical-protein
MKSGILEKIDLAFKSVNPRLSKVFLPWTVRNPRYIRGSAKLLEAFKESESLRDSLLKEGLVVPPIMILGITNRCNLKCKGCFASALGNSGREGLPTVKGL
>NC_017934.1|WP_014731368.1|2056988_2057459_-|hypothetical-protein
MVKPEKQKGYLVRLKVLKDETDLLRVDIELYKTSTHPVIRDSLFDASIIRASKLVRNSGFTMKTFREYIRQGCPKHFRRELYRIMDDFDREEALLAERIKKLKNRRDRVIVHMDPRFAFHPEREDENRVDLEDIEAICSHLERQVAFFSGKRLDGK
>NC_017934.1|WP_014731369.1|2057565_2058807_-|hypothetical-protein
MRLKRVSIVIVAALVAMLMISSCIPKDPVVAATRKFIQFIEEEGEPEGPFTGLYLGEVDQDDIIGSESAGGQELQYQLQGINESGYFFYLDEAPGAFYDHPGKLVVVSKTNEIIFEEDTEGWPTINGNIVSPLSDRNLYAKAVIWDKWKYVREIITGTVVDWTQVFFRIKGAVITSGLTPTQNLYAEARDVRDLMSNAFKTIMGTDRVRDVKYVSGAAAPNWIAVLAAMDELLTTEKVNYMTLYFIAHGNTNLMNLGGTTFFANQLRTYILEHSGVKFCIIIESCHSGSWLEGLKSAGVIPPNVEIIITTTTATKGAYPDWDSAGGAADYNPSDMYVEWSGDFLQKLSSFTGTGWSEVTSYASSKSIDTLPALLYKCYTAIKGGSPSTTSWTLTERFVAGPVQQPMIYTKWTP
>NC_017934.1|WP_014731370.1|2059112_2060006_-|MORN-repeat-protein
MKRISLFLVLLVFSVIALGQSEFMIPMSTEDFGLRGPVKSAKILYPENEMDLGVDEELVLSGYSVLFFNENGSLVSQIEYDKDGNEQSAILFNYDSNGKLLSVSGRENGVEENVDEIKVENGRIAGIVVEDSEGDSNLIMEYDEAGRLIAQKISGMSEGQKIEMTISMKYDDNGNLIEESFGMMGMVMTKTVFEYNAKNQSIRELEYMYMFAEPGSEPEPIESILEYNEMGDVVLRISDSAFGEEKEAVVYEYEYDSMGNYMHKVGYYVMNAADLEKETWKETATVEEEETREIEYY
>NC_017934.1|WP_041928195.1|2060052_2061009_+|GNAT-family-N-acetyltransferase
MKTVSFISPIGGIMMKDFYVDKPSFEESRRIMEKMYHSIPESSNGRYSLSELRPIEEVYFDFFKRGDKLLVLRGQGEIIGHIHFGPQRDERFSSNLSGHIYDLYVKKGYRGEGAGRTLLRSALEEVKPIFQTITANTYRFGAGWHMLKSEGFNEKRITFSTDKRLSHSRINAFEIFRGLPDDLGKVFVEISSSPTIVKRQLQMTPSELFFNLNEIMDSGGRILICRQDEETAGVLIYSVFEDLMTYSLLGFIEFVFVSERFRRMGIGRNLLSFLSEYLLIRGVEESFFECVFESDYHFWSRAIGMKEFSVLLEKKVES
>NC_017934.1|WP_014731372.1|2061148_2062327_+|MFS-transporter
MHNKRLPLLLTSLLVFFVMFGFGLLLQLKLRELGASLLMVGLLTTVRGAVETFGSPAWGAISDGLKKRKLLMILLVLTPAFLYFAYSVIETPIVFILFSSLIAFFTAGFEPIAMALSTEHSRDSVRNTSRELSILNTANSIGMLTGRIMLSILLVFFTVSQAINWYAFVALIAVIPVLFLKEEKHLVSRRKGFLNRLFPLKEDSTPLWENGLWAVYAGTFLRQLGTAGATSIIAIYMTERIGLSGAATAIITSINPFMQIFSHIFFGRVISKTGPRKSTLIGIGLTVFTMVFFAVAKNWVLIAIGYFCLGIAFGAFINGAGTMVSLCSPPGRRAEFLGLLRSARAIGFMVGPLLAGTVAEYSYFGMFIMMASLIATGGLIVIAFTKEQFVTG
>NC_017934.1|WP_014731373.1|2062437_2062788_+|DUF3147-family-protein
MLRYIVKILVSSVIIALVSEVSKKSGYIGGLIASLPLTSMLALFWLYNDTKNSSKVAELSTGILVFVLPSLIFFVAMPLFLRRGINFYVALALSSGVMMAGYAFFSLILSKFGVRL
>NC_017934.1|WP_148270023.1|2063024_2063222_-|hypothetical-protein
MSFRNKVKDLGNEPQEKIKSKGLLGALILGSLFALTFCPVLAVLFFGSVIPLAINEQSRLLIPAI
>NC_017934.1|WP_014731374.1|2063693_2064464_-|metallophosphoesterase-family-protein
MRIVFFSDIHGNLEALEAVLKDIESQNIERIYCLGDLVGYGPQPQEVVQRIRDLKIPTIMGNYDDAIGYEKKSCGCAYNPGRETEVGDESLNWSITNTSAAAKEFLRSLPHTLEFEEEGVKFLLVHGSPVDHLLEYIRPDTSSERLQKVLERVKADVVVNGHTHLPMVRWAMGKLVFNDGSVGRPKDGNPKACYLIIDVVQQSISYEFRRVEYDVKSTVEKITEVGLPAELGLVLVLGKGYEMGQSKSKNTIDFKI

Crispr_ID: NC_017934_9

• CRISPR_ID: NC_017934_9
• CRISPR_location: 2471273-2476498
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 79 spacers
• Cas_protein_info: cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,csm3gr7,cas6,cas2,cas1,cas4

Consensus repeat of NC_017934_9

Consensus_repeat	Method
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CRISPRCasFinder
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CRT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	PILER-CR

spacers of NC_017934_9

>9.1|2471303|34|NC_017934|CRISPRCasFinder,CRT
AGCAACTATACCTTGAGAATATTCTTAGACGGTA
>9.2|2471367|36|NC_017934|CRISPRCasFinder,CRT
ATGTTCTCTGGTGGAAGGGAGAAGATGGATTCTTTG
>9.3|2471433|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGCAACTATACCTTGAGAATATTCTTAGACGGTA
>9.4|2471497|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGCAACTATACCTTGAGAATATTCTTAGACGGTA
>9.5|2471561|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
>9.6|2471629|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTGCTGCCATGACAATCGGAGGTATCAGTGCTGA
>9.7|2471693|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
>9.8|2471761|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGGCCCTCACGCAAGACGCCCTTATGGCGATATCCG
>9.9|2471827|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CCGCAAACACAAGATATTTCATTAGCACAATAGAAAGA
>9.10|2471895|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TACACGTAACGCAAACACCCCCGATGTAACGCCGTG
>9.11|2471961|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATAAACTTTATTGGCCTCTCCGTTTGCGCCCTTGA
>9.12|2472026|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTAAGTAGAACCTTAGCACCGTCAACGTCTATAACA
>9.13|2472092|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTTAGACGGCGTCACTTCTAGCTTCGTCTCTTTCTGA
>9.14|2472159|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCTAGCCGCCCATAAGGGCGGTTAGCTTTGGAGGCA
>9.15|2472225|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATGTGTGTTTACTCTAAAGGCCTAAGGCGAGAGGT
>9.16|2472290|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAAAAACGAAATTCAACCCACGAATTTTCGGACGC
>9.17|2472355|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAACCTCCGAAGTTTCTGAAGAACCAGAGGTGAAGC
>9.18|2472421|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATTATTCGGAGAACTGGTTCGAGATAGATGCTTACGC
>9.19|2472489|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTGTTTAAGGTTTTTGACTGGCAGACGAAGCAAA
>9.20|2472553|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGAAATCCGGATTCTCACCGCATGGAGATTCACA
>9.21|2472618|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCGGTCCTATGTGCATATCCCCTAACGCCATATCAG
>9.22|2472684|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CCTCCCCACTTGCTTGAAGAAACATGCCTCCATC
>9.23|2472748|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGAAGGTGTCACATCGAGCTTCGTCTCTTTCTGA
>9.24|2472812|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTGAAGGGCAGTTCGAGAGAAAACTCGCCTGTGAAGGGA
>9.25|2472881|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTGGTAATGCCTATGAACATTAGAAGCGCTCCAA
>9.26|2472945|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACCATCATCTGGCCCATATGAGGTATTCTCGCTTAC
>9.27|2473011|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACTGAAACCCCCCAATCTTTTCGTTGAGGTGAGAGA
>9.28|2473077|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGGCCTCAAACTCTACATCTGCAAAAGCATCTACA
>9.29|2473142|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGTCGATTCTGTAATAGATTCTCTTCGAAGCACCGTCA
>9.30|2473210|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGCGGTTTGCATATAATGCTGATACTCGTGTCGGA
>9.31|2473275|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGCATTGTATTGATATGATTCCACAGAACCAATAG
>9.32|2473340|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCCGAGGGCGAGGCTCAATATGAACCCTCAATTCTGA
>9.33|2473407|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGTGATTTTAGAAGCGGGTTAGAGGTTGTTGGCGGAG
>9.34|2473475|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAAAAGGCTGGTGGAGTGGGCCTATGAGAAAGAAAA
>9.35|2473541|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTTTACCACAGACTCAACAAACATAGAGATTCCTT
>9.36|2473606|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTACTACCCTCGTCAACCTGTTAGGTTCATACGG
>9.37|2473671|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATTATCTTCGATTCAAAGATGTTGACTACATCA
>9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGGCTCTCTTCGGAGAGCCTTTCTTTATTTGGAG
>9.39|2473800|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TAAATGGTTAAGTACGTGATAGTGGTAAAAGACA
>9.40|2473864|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCGAAAAGATGTTGAAACCCTTTTCATCGCACAAGA
>9.41|2473930|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGCTTCGGGCTTCCATCTCTGAATAGTCCTCTCGG
>9.42|2473995|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTCAATAGACTGTTGACGAGATCCCCGATGAGAC
>9.43|2474059|43|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGCTGAGCCTCCTAAGGAAGAGGTGGTGAAGGATGAGAAGATA
>9.44|2474132|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGAAAAGCACTGGCCTAAAGTGAAGAGATACAGAGACA
>9.45|2474200|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGGATCTCTCAGCTCCGCTTCCTTGAAGACAGGC
>9.46|2474264|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAAAAAGGTGTTGGCAATCACCCGTGCCCAAAACCAT
>9.47|2474331|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACGAAAGATATTGATGTTGTCAGGCCGTGGAAGGT
>9.48|2474396|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGAGCCACCGTTCATATTCTGTGTGACTTTCTCTTT
>9.49|2474462|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TACATGATGGAACTTGACGAAAAGTATTGCGATG
>9.50|2474526|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGGAATCGTGGAGGAAGGAAAGAAACAGTACAAGCTCAA
>9.51|2474595|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTCCCTGAGCTGACTCTGTAATTGCGAGAAAGTG
>9.52|2474660|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGAATGTGGGTCGATGGCATATTTGCCGATCTTGAAG
>9.53|2474727|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCGAGAACGAGAAGCAATATCCACAACGTGAAAAG
>9.54|2474792|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAGTTCAAGTTTGTGGTTCACTCGACTTCTTCTA
>9.55|2474856|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAAAATGACCCAAAACCCGAATTGGTTGCAAGTGCAGA
>9.56|2474924|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CATTGCGAAGCAGAGAAACGGCTCGACAGGCTCGA
>9.57|2474989|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAGATGATCGAGCAGGCAGATCTCTTGATTCTTGA
>9.58|2475054|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTCAGAAAGGCGCTGCCTCTGGCATTGAAACTTTGG
>9.59|2475121|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTTCATCCGTGCCCAACTTCAAGAACTGGGGACGTA
>9.60|2475187|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCCTCTTGACGAAAACAGGCACACTCTTTATCAGA
>9.61|2475252|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTAGTGCCACCATCTAATGTAAGGAAAGTCAACACA
>9.62|2475318|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGACGACTCAGTTTCATCCCCTGCCTAGGTTAGGTA
>9.63|2475384|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTTCTTCTGGAAATATGAAGCAGAGGATCTGGCA
>9.64|2475449|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGGTATTCAAACCACAGCCTCATAGAACGAAAGA
>9.65|2475514|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATAGAGGTCGAATTTGACGAGACCTGGTCGAACA
>9.66|2475579|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACGGCTTCGGTGGTGGCAGAAAAAGCGGTAGTGCCG
>9.67|2475645|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCCGTATCTGGTGGATATTACCATTCTTTAGGAA
>9.68|2475709|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAAAGAGTTAGAAATAGGCTTCAATCCTGATTATC
>9.69|2475774|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCCATTCCCACGTTTTGAGTCTATTCAACGTTCAC
>9.70|2475839|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAAGTACAAGTGCTCTATATAGTATATTCCCATATTG
>9.71|2475906|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACCGTTAGCAATTCAAGCAACGGCTCTATTTTCTC
>9.72|2475971|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATTAGCAGCTTTGCGCTTTGAAGGCATTGACGGTG
>9.73|2476037|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATGCACTTCATAGCCTTTTCTGAGACGATATACCG
>9.74|2476102|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTGATATAGTGTTTATCCTATTCCTGCTCGGTTATCCGC
>9.75|2476171|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TAGCGTAATTTTCTGTGCGCCCTCACTCGCCAAAGTG
>9.76|2476238|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGCTGTATCTTCTGGATATTACCATTCTCTAGCAA
>9.77|2476303|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGGAATGAACCTCACAGTCTTTGACGAGTGGTCTA
>9.78|2476368|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATACCGACTGCAGGTGGTTCGACGAACATGAGCGG
>9.79|2476433|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGGTCTCAAGCTCGTCTTCGCCAATCTCGAAGTCGA

CRISPR arrays and Neighbor proteins around NC_017934_9

CRISPR arrays

The CRISPR arrays of NC_017934_9

>merge|NC_017934|9|2471273-2476498|CRISPRCasFinder,CRT,PILER-CR
GTTTCAATTCCTCATAGGTAGTCTGGAAGCAGCAACTATACCTTGAGAATATTCTTAGACGGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCATGTTCTCTGGTGGAAGGGAGAAGATGGATTCTTTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGCAACTATACCTTGAGAATATTCTTAGACGGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGCAACTATACCTTGAGAATATTCTTAGACGGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTGCTGCCATGACAATCGGAGGTATCAGTGCTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGGCCCTCACGCAAGACGCCCTTATGGCGATATCCGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCCGCAAACACAAGATATTTCATTAGCACAATAGAAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTACACGTAACGCAAACACCCCCGATGTAACGCCGTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCATAAACTTTATTGGCCTCTCCGTTTGCGCCCTTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTAAGTAGAACCTTAGCACCGTCAACGTCTATAACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTTAGACGGCGTCACTTCTAGCTTCGTCTCTTTCTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCTAGCCGCCCATAAGGGCGGTTAGCTTTGGAGGCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCATGTGTGTTTACTCTAAAGGCCTAAGGCGAGAGGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAAAAACGAAATTCAACCCACGAATTTTCGGACGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAACCTCCGAAGTTTCTGAAGAACCAGAGGTGAAGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATTATTCGGAGAACTGGTTCGAGATAGATGCTTACGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTGTTTAAGGTTTTTGACTGGCAGACGAAGCAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGAAATCCGGATTCTCACCGCATGGAGATTCACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCGGTCCTATGTGCATATCCCCTAACGCCATATCAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCCTCCCCACTTGCTTGAAGAAACATGCCTCCATCGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGAAGGTGTCACATCGAGCTTCGTCTCTTTCTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTGAAGGGCAGTTCGAGAGAAAACTCGCCTGTGAAGGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTGGTAATGCCTATGAACATTAGAAGCGCTCCAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCACCATCATCTGGCCCATATGAGGTATTCTCGCTTACGTTTCAATTCCTCATAGGTAGTCTGGAAGCACTGAAACCCCCCAATCTTTTCGTTGAGGTGAGAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGGCCTCAAACTCTACATCTGCAAAAGCATCTACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGTCGATTCTGTAATAGATTCTCTTCGAAGCACCGTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGCGGTTTGCATATAATGCTGATACTCGTGTCGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGCATTGTATTGATATGATTCCACAGAACCAATAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCCGAGGGCGAGGCTCAATATGAACCCTCAATTCTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGTGATTTTAGAAGCGGGTTAGAGGTTGTTGGCGGAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAAAAGGCTGGTGGAGTGGGCCTATGAGAAAGAAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTTTACCACAGACTCAACAAACATAGAGATTCCTTGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGTACTACCCTCGTCAACCTGTTAGGTTCATACGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATTATCTTCGATTCAAAGATGTTGACTACATCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAGGCTCTCTTCGGAGAGCCTTTCTTTATTTGGAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTAAATGGTTAAGTACGTGATAGTGGTAAAAGACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGAAAAGATGTTGAAACCCTTTTCATCGCACAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGCTTCGGGCTTCCATCTCTGAATAGTCCTCTCGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTCAATAGACTGTTGACGAGATCCCCGATGAGACGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGCTGAGCCTCCTAAGGAAGAGGTGGTGAAGGATGAGAAGATAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGAAAAGCACTGGCCTAAAGTGAAGAGATACAGAGACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGGATCTCTCAGCTCCGCTTCCTTGAAGACAGGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAAAAAGGTGTTGGCAATCACCCGTGCCCAAAACCATGTTTCAATTCCTCATAGGTAGTCTGGAAGCACGAAAGATATTGATGTTGTCAGGCCGTGGAAGGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGAGCCACCGTTCATATTCTGTGTGACTTTCTCTTTGTTTCAATTCCTCATAGGTAGTCTGGAAGCTACATGATGGAACTTGACGAAAAGTATTGCGATGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGGAATCGTGGAGGAAGGAAAGAAACAGTACAAGCTCAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGTCCCTGAGCTGACTCTGTAATTGCGAGAAAGTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGAATGTGGGTCGATGGCATATTTGCCGATCTTGAAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGAGAACGAGAAGCAATATCCACAACGTGAAAAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAGTTCAAGTTTGTGGTTCACTCGACTTCTTCTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAAAATGACCCAAAACCCGAATTGGTTGCAAGTGCAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCATTGCGAAGCAGAGAAACGGCTCGACAGGCTCGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAGATGATCGAGCAGGCAGATCTCTTGATTCTTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGTCAGAAAGGCGCTGCCTCTGGCATTGAAACTTTGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTTCATCCGTGCCCAACTTCAAGAACTGGGGACGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCCTCTTGACGAAAACAGGCACACTCTTTATCAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTAGTGCCACCATCTAATGTAAGGAAAGTCAACACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGACGACTCAGTTTCATCCCCTGCCTAGGTTAGGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGTTCTTCTGGAAATATGAAGCAGAGGATCTGGCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAGGTATTCAAACCACAGCCTCATAGAACGAAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATAGAGGTCGAATTTGACGAGACCTGGTCGAACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCACGGCTTCGGTGGTGGCAGAAAAAGCGGTAGTGCCGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCCGTATCTGGTGGATATTACCATTCTTTAGGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAAAGAGTTAGAAATAGGCTTCAATCCTGATTATCGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCCATTCCCACGTTTTGAGTCTATTCAACGTTCACGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAAGTACAAGTGCTCTATATAGTATATTCCCATATTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCACCGTTAGCAATTCAAGCAACGGCTCTATTTTCTCGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATTAGCAGCTTTGCGCTTTGAAGGCATTGACGGTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCATGCACTTCATAGCCTTTTCTGAGACGATATACCGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTGATATAGTGTTTATCCTATTCCTGCTCGGTTATCCGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCTAGCGTAATTTTCTGTGCGCCCTCACTCGCCAAAGTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGCTGTATCTTCTGGATATTACCATTCTCTAGCAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGGAATGAACCTCACAGTCTTTGACGAGTGGTCTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCATACCGACTGCAGGTGGTTCGACGAACATGAGCGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGGTCTCAAGCTCGTCTTCGCCAATCTCGAAGTCGAGTTTCAATTCCTCATAGGTAGTCTGGAAGC

>NC_017934|9|9|2471273-2476498|CRISPRCasFinder
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTTCTCTGGTGGAAGGGAGAAGATGGATTCTTTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCTGCCATGACAATCGGAGGTATCAGTGCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCCCTCACGCAAGACGCCCTTATGGCGATATCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGCAAACACAAGATATTTCATTAGCACAATAGAAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACACGTAACGCAAACACCCCCGATGTAACGCCGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAACTTTATTGGCCTCTCCGTTTGCGCCCTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAAGTAGAACCTTAGCACCGTCAACGTCTATAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTTAGACGGCGTCACTTCTAGCTTCGTCTCTTTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTAGCCGCCCATAAGGGCGGTTAGCTTTGGAGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTGTGTTTACTCTAAAGGCCTAAGGCGAGAGGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAAAAACGAAATTCAACCCACGAATTTTCGGACGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAACCTCCGAAGTTTCTGAAGAACCAGAGGTGAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTATTCGGAGAACTGGTTCGAGATAGATGCTTACGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGTTTAAGGTTTTTGACTGGCAGACGAAGCAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAATCCGGATTCTCACCGCATGGAGATTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGGTCCTATGTGCATATCCCCTAACGCCATATCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTCCCCACTTGCTTGAAGAAACATGCCTCCATC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAAGGTGTCACATCGAGCTTCGTCTCTTTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGAAGGGCAGTTCGAGAGAAAACTCGCCTGTGAAGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGTAATGCCTATGAACATTAGAAGCGCTCCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACCATCATCTGGCCCATATGAGGTATTCTCGCTTAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTGAAACCCCCCAATCTTTTCGTTGAGGTGAGAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCCTCAAACTCTACATCTGCAAAAGCATCTACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTCGATTCTGTAATAGATTCTCTTCGAAGCACCGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGCGGTTTGCATATAATGCTGATACTCGTGTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCATTGTATTGATATGATTCCACAGAACCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCGAGGGCGAGGCTCAATATGAACCCTCAATTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGTGATTTTAGAAGCGGGTTAGAGGTTGTTGGCGGAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAAAGGCTGGTGGAGTGGGCCTATGAGAAAGAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTACCACAGACTCAACAAACATAGAGATTCCTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACTACCCTCGTCAACCTGTTAGGTTCATACGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTATCTTCGATTCAAAGATGTTGACTACATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGGCTCTCTTCGGAGAGCCTTTCTTTATTTGGAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAATGGTTAAGTACGTGATAGTGGTAAAAGACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGAAAAGATGTTGAAACCCTTTTCATCGCACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCTTCGGGCTTCCATCTCTGAATAGTCCTCTCGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTCAATAGACTGTTGACGAGATCCCCGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGCTGAGCCTCCTAAGGAAGAGGTGGTGAAGGATGAGAAGATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAAAGCACTGGCCTAAAGTGAAGAGATACAGAGACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGATCTCTCAGCTCCGCTTCCTTGAAGACAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAAAGGTGTTGGCAATCACCCGTGCCCAAAACCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGAAAGATATTGATGTTGTCAGGCCGTGGAAGGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAGCCACCGTTCATATTCTGTGTGACTTTCTCTTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACATGATGGAACTTGACGAAAAGTATTGCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGAATCGTGGAGGAAGGAAAGAAACAGTACAAGCTCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTCCCTGAGCTGACTCTGTAATTGCGAGAAAGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAATGTGGGTCGATGGCATATTTGCCGATCTTGAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGAGAACGAGAAGCAATATCCACAACGTGAAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAGTTCAAGTTTGTGGTTCACTCGACTTCTTCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAATGACCCAAAACCCGAATTGGTTGCAAGTGCAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CATTGCGAAGCAGAGAAACGGCTCGACAGGCTCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAGATGATCGAGCAGGCAGATCTCTTGATTCTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTCAGAAAGGCGCTGCCTCTGGCATTGAAACTTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTCATCCGTGCCCAACTTCAAGAACTGGGGACGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCTCTTGACGAAAACAGGCACACTCTTTATCAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGTGCCACCATCTAATGTAAGGAAAGTCAACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGACGACTCAGTTTCATCCCCTGCCTAGGTTAGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTTCTTCTGGAAATATGAAGCAGAGGATCTGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGGTATTCAAACCACAGCCTCATAGAACGAAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAGGTCGAATTTGACGAGACCTGGTCGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGGCTTCGGTGGTGGCAGAAAAAGCGGTAGTGCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAGAGTTAGAAATAGGCTTCAATCCTGATTATC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCATTCCCACGTTTTGAGTCTATTCAACGTTCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGTACAAGTGCTCTATATAGTATATTCCCATATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACCGTTAGCAATTCAAGCAACGGCTCTATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTAGCAGCTTTGCGCTTTGAAGGCATTGACGGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGCACTTCATAGCCTTTTCTGAGACGATATACCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGATATAGTGTTTATCCTATTCCTGCTCGGTTATCCGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAGCGTAATTTTCTGTGCGCCCTCACTCGCCAAAGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCTGTATCTTCTGGATATTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAATGAACCTCACAGTCTTTGACGAGTGGTCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATACCGACTGCAGGTGGTTCGACGAACATGAGCGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGTCTCAAGCTCGTCTTCGCCAATCTCGAAGTCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC

>NC_017934|9|6|2471273-2476498|CRT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTTCTCTGGTGGAAGGGAGAAGATGGATTCTTTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCTGCCATGACAATCGGAGGTATCAGTGCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCCCTCACGCAAGACGCCCTTATGGCGATATCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGCAAACACAAGATATTTCATTAGCACAATAGAAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACACGTAACGCAAACACCCCCGATGTAACGCCGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAACTTTATTGGCCTCTCCGTTTGCGCCCTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAAGTAGAACCTTAGCACCGTCAACGTCTATAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTTAGACGGCGTCACTTCTAGCTTCGTCTCTTTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTAGCCGCCCATAAGGGCGGTTAGCTTTGGAGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTGTGTTTACTCTAAAGGCCTAAGGCGAGAGGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAAAAACGAAATTCAACCCACGAATTTTCGGACGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAACCTCCGAAGTTTCTGAAGAACCAGAGGTGAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTATTCGGAGAACTGGTTCGAGATAGATGCTTACGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGTTTAAGGTTTTTGACTGGCAGACGAAGCAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAATCCGGATTCTCACCGCATGGAGATTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGGTCCTATGTGCATATCCCCTAACGCCATATCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTCCCCACTTGCTTGAAGAAACATGCCTCCATC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAAGGTGTCACATCGAGCTTCGTCTCTTTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGAAGGGCAGTTCGAGAGAAAACTCGCCTGTGAAGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGTAATGCCTATGAACATTAGAAGCGCTCCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACCATCATCTGGCCCATATGAGGTATTCTCGCTTAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTGAAACCCCCCAATCTTTTCGTTGAGGTGAGAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCCTCAAACTCTACATCTGCAAAAGCATCTACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTCGATTCTGTAATAGATTCTCTTCGAAGCACCGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGCGGTTTGCATATAATGCTGATACTCGTGTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCATTGTATTGATATGATTCCACAGAACCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCGAGGGCGAGGCTCAATATGAACCCTCAATTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGTGATTTTAGAAGCGGGTTAGAGGTTGTTGGCGGAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAAAGGCTGGTGGAGTGGGCCTATGAGAAAGAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTACCACAGACTCAACAAACATAGAGATTCCTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACTACCCTCGTCAACCTGTTAGGTTCATACGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTATCTTCGATTCAAAGATGTTGACTACATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGGCTCTCTTCGGAGAGCCTTTCTTTATTTGGAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAATGGTTAAGTACGTGATAGTGGTAAAAGACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGAAAAGATGTTGAAACCCTTTTCATCGCACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCTTCGGGCTTCCATCTCTGAATAGTCCTCTCGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTCAATAGACTGTTGACGAGATCCCCGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGCTGAGCCTCCTAAGGAAGAGGTGGTGAAGGATGAGAAGATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAAAGCACTGGCCTAAAGTGAAGAGATACAGAGACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGATCTCTCAGCTCCGCTTCCTTGAAGACAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAAAGGTGTTGGCAATCACCCGTGCCCAAAACCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGAAAGATATTGATGTTGTCAGGCCGTGGAAGGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAGCCACCGTTCATATTCTGTGTGACTTTCTCTTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACATGATGGAACTTGACGAAAAGTATTGCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGAATCGTGGAGGAAGGAAAGAAACAGTACAAGCTCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTCCCTGAGCTGACTCTGTAATTGCGAGAAAGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAATGTGGGTCGATGGCATATTTGCCGATCTTGAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGAGAACGAGAAGCAATATCCACAACGTGAAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAGTTCAAGTTTGTGGTTCACTCGACTTCTTCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAATGACCCAAAACCCGAATTGGTTGCAAGTGCAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CATTGCGAAGCAGAGAAACGGCTCGACAGGCTCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAGATGATCGAGCAGGCAGATCTCTTGATTCTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTCAGAAAGGCGCTGCCTCTGGCATTGAAACTTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTCATCCGTGCCCAACTTCAAGAACTGGGGACGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCTCTTGACGAAAACAGGCACACTCTTTATCAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGTGCCACCATCTAATGTAAGGAAAGTCAACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGACGACTCAGTTTCATCCCCTGCCTAGGTTAGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTTCTTCTGGAAATATGAAGCAGAGGATCTGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGGTATTCAAACCACAGCCTCATAGAACGAAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAGGTCGAATTTGACGAGACCTGGTCGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGGCTTCGGTGGTGGCAGAAAAAGCGGTAGTGCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAGAGTTAGAAATAGGCTTCAATCCTGATTATC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCATTCCCACGTTTTGAGTCTATTCAACGTTCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGTACAAGTGCTCTATATAGTATATTCCCATATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACCGTTAGCAATTCAAGCAACGGCTCTATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTAGCAGCTTTGCGCTTTGAAGGCATTGACGGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGCACTTCATAGCCTTTTCTGAGACGATATACCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGATATAGTGTTTATCCTATTCCTGCTCGGTTATCCGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAGCGTAATTTTCTGTGCGCCCTCACTCGCCAAAGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCTGTATCTTCTGGATATTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAATGAACCTCACAGTCTTTGACGAGTGGTCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATACCGACTGCAGGTGGTTCGACGAACATGAGCGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGTCTCAAGCTCGTCTTCGCCAATCTCGAAGTCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC

>NC_017934|9|6|2471403-2476498|PILER-CR
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCAACTATACCTTGAGAATATTCTTAGACGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCTGCCATGACAATCGGAGGTATCAGTGCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTACCGTGCCCGAAGCAAAGAGGATTGCAAAAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCCCTCACGCAAGACGCCCTTATGGCGATATCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGCAAACACAAGATATTTCATTAGCACAATAGAAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACACGTAACGCAAACACCCCCGATGTAACGCCGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAACTTTATTGGCCTCTCCGTTTGCGCCCTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAAGTAGAACCTTAGCACCGTCAACGTCTATAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTTAGACGGCGTCACTTCTAGCTTCGTCTCTTTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTAGCCGCCCATAAGGGCGGTTAGCTTTGGAGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTGTGTTTACTCTAAAGGCCTAAGGCGAGAGGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAAAAACGAAATTCAACCCACGAATTTTCGGACGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAACCTCCGAAGTTTCTGAAGAACCAGAGGTGAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTATTCGGAGAACTGGTTCGAGATAGATGCTTACGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGTTTAAGGTTTTTGACTGGCAGACGAAGCAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAATCCGGATTCTCACCGCATGGAGATTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGGTCCTATGTGCATATCCCCTAACGCCATATCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTCCCCACTTGCTTGAAGAAACATGCCTCCATC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAAGGTGTCACATCGAGCTTCGTCTCTTTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGAAGGGCAGTTCGAGAGAAAACTCGCCTGTGAAGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGTAATGCCTATGAACATTAGAAGCGCTCCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACCATCATCTGGCCCATATGAGGTATTCTCGCTTAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTGAAACCCCCCAATCTTTTCGTTGAGGTGAGAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCCTCAAACTCTACATCTGCAAAAGCATCTACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTCGATTCTGTAATAGATTCTCTTCGAAGCACCGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGCGGTTTGCATATAATGCTGATACTCGTGTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCATTGTATTGATATGATTCCACAGAACCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCGAGGGCGAGGCTCAATATGAACCCTCAATTCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGTGATTTTAGAAGCGGGTTAGAGGTTGTTGGCGGAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAAAGGCTGGTGGAGTGGGCCTATGAGAAAGAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTACCACAGACTCAACAAACATAGAGATTCCTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACTACCCTCGTCAACCTGTTAGGTTCATACGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTATCTTCGATTCAAAGATGTTGACTACATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGGCTCTCTTCGGAGAGCCTTTCTTTATTTGGAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAATGGTTAAGTACGTGATAGTGGTAAAAGACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGAAAAGATGTTGAAACCCTTTTCATCGCACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCTTCGGGCTTCCATCTCTGAATAGTCCTCTCGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTCAATAGACTGTTGACGAGATCCCCGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGCTGAGCCTCCTAAGGAAGAGGTGGTGAAGGATGAGAAGATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAAAGCACTGGCCTAAAGTGAAGAGATACAGAGACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGATCTCTCAGCTCCGCTTCCTTGAAGACAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAAAGGTGTTGGCAATCACCCGTGCCCAAAACCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGAAAGATATTGATGTTGTCAGGCCGTGGAAGGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAGCCACCGTTCATATTCTGTGTGACTTTCTCTTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACATGATGGAACTTGACGAAAAGTATTGCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGAATCGTGGAGGAAGGAAAGAAACAGTACAAGCTCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTCCCTGAGCTGACTCTGTAATTGCGAGAAAGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGAATGTGGGTCGATGGCATATTTGCCGATCTTGAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGAGAACGAGAAGCAATATCCACAACGTGAAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAGTTCAAGTTTGTGGTTCACTCGACTTCTTCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAATGACCCAAAACCCGAATTGGTTGCAAGTGCAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CATTGCGAAGCAGAGAAACGGCTCGACAGGCTCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAGATGATCGAGCAGGCAGATCTCTTGATTCTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTCAGAAAGGCGCTGCCTCTGGCATTGAAACTTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTCATCCGTGCCCAACTTCAAGAACTGGGGACGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCTCTTGACGAAAACAGGCACACTCTTTATCAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGTGCCACCATCTAATGTAAGGAAAGTCAACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGACGACTCAGTTTCATCCCCTGCCTAGGTTAGGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTTCTTCTGGAAATATGAAGCAGAGGATCTGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGGTATTCAAACCACAGCCTCATAGAACGAAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAGGTCGAATTTGACGAGACCTGGTCGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGGCTTCGGTGGTGGCAGAAAAAGCGGTAGTGCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAAGAGTTAGAAATAGGCTTCAATCCTGATTATC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCATTCCCACGTTTTGAGTCTATTCAACGTTCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGTACAAGTGCTCTATATAGTATATTCCCATATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACCGTTAGCAATTCAAGCAACGGCTCTATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTAGCAGCTTTGCGCTTTGAAGGCATTGACGGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGCACTTCATAGCCTTTTCTGAGACGATATACCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGATATAGTGTTTATCCTATTCCTGCTCGGTTATCCGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAGCGTAATTTTCTGTGCGCCCTCACTCGCCAAAGTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCTGTATCTTCTGGATATTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAATGAACCTCACAGTCTTTGACGAGTGGTCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATACCGACTGCAGGTGGTTCGACGAACATGAGCGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGTCTCAAGCTCGTCTTCGCCAATCTCGAAGTCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731669.1|2457584_2458430_-|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl|CDD|224315
NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl|CDD|376642
NC_017934.1|WP_014731681.1|2477496_2477895_-|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	unknown
NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl|CDD|213662
NC_017934.1|WP_014731673.1|2462432_2463392_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|119321
NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|273859
NC_017934.1|WP_014731676.1|2465044_2467144_-|beta-galactosidase	unknown	unknown	gnl|CDD|366567
NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	gnl|CDD|187832
NC_017934.1|WP_014731674.1|2463411_2464140_-|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224053
NC_017934.1|WP_014731678.1|2469362_2470730_+|ATP-binding-protein	unknown	unknown	gnl|CDD|224586
NC_017934.1|WP_014731675.1|2464192_2465026_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	gnl|CDD|377130
NC_017934.1|WP_014731677.1|2467190_2468333_-|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NC_017934.1|WP_014731670.1|2458455_2459613_-|MFS-transporter	unknown	unknown	gnl|CDD|340891
NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017934.1|WP_014731671.1|2459982_2461143_-|substrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|380539
NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_017934.1|WP_014731672.1|2461175_2462408_-|alanine-racemase	unknown	unknown	gnl|CDD|143486

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-31	103.6	0.3
NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	2.5e-22	74.6	0.0
NC_017934.1|WP_014731681.1|2477496_2477895_-|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	2.2e-36	119.7	3.0
NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	2.7e-78	257.7	0.5
NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	2.7e-27	91.0	2.3
NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.4e-132	436.4	2.7
NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	5.6e-84	276.6	0.0
NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	3.6e-45	148.7	4.0
NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	5.4e-46	152.1	0.0
NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	1.4e-173	574.1	28.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_014731669.1|2457584_2458430_-|ADP-ribosylglycohydrolase-family-protein	gnl|CDD|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	2.24383e-57
NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|376642	pfam01881, Cas_Cas6, CRISPR associated protein Cas6. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers.	1.32175e-18
NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	4.70058e-14
NC_017934.1|WP_014731673.1|2462432_2463392_-|ABC-transporter-permease	gnl|CDD|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	1.06931e-67
NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|273859	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.	1.43372e-19
NC_017934.1|WP_014731676.1|2465044_2467144_-|beta-galactosidase	gnl|CDD|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	5.28372e-40
NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.97496e-44
NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein	gnl|CDD|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	1.55756e-145
NC_017934.1|WP_014731674.1|2463411_2464140_-|sugar-ABC-transporter-ATP-binding-protein	gnl|CDD|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.18504e-96
NC_017934.1|WP_014731678.1|2469362_2470730_+|ATP-binding-protein	gnl|CDD|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.41143e-36
NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.19575e-33
NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein	gnl|CDD|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	9.66759e-11
NC_017934.1|WP_014731677.1|2467190_2468333_-|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.93724e-49
NC_017934.1|WP_014731670.1|2458455_2459613_-|MFS-transporter	gnl|CDD|340891	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins. This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.03486e-35
NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.46371e-53
NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.3404e-159
NC_017934.1|WP_014731671.1|2459982_2461143_-|substrate-binding-domain-containing-protein	gnl|CDD|380539	cd06316, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	4.16581e-38
NC_017934.1|WP_014731672.1|2461175_2462408_-|alanine-racemase	gnl|CDD|143486	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	2.17947e-160

Protein sequences

>NC_017934.1|WP_014731678.1|2469362_2470730_+|ATP-binding-protein
MFVGRKRELAYLEERFKTGKPELIILYGRRRVGKTELTKEFLRKKRGIYYLAEKLPENLQLKKLSEKVIEFFDEDIITEFSNWEMLFKYLASKHDRYILVIDEFPYLIEREPGIISSFQKGWDEYLSNSNVFLILTGSSVSVMENSVLGYKSPLYGRRTGQLLLKQFPFNEIGEFFEKKYGFDDLLKIWGTLGGVPFYLEQFDSDLDYYGNVMEKIYNQNEVLFAEAEFLLNDELREPRNYFAILRAISLGKRKLGEIINETGIDKSSIMKYISILNLLGIVEKEVPVGEDPLKSKKGLYRIADNFFRFYFRYVFYYKDLILTDQRERLLSILKDTENQFFALTYEDFARSAVMWISGSNYFEIGRWWDRNAEIDLVGMNREEKRILLGEVKWSERPVTTDIFAALREKAYLPRWDEFKEKEYAIFSRSGFTKALVDEAKSDRSLMLFHGDKRVV
>NC_017934.1|WP_014731677.1|2467190_2468333_-|ROK-family-protein
MRNLHFTERERVILARIRNEGPIARVRIAKKENISKPVVTLGVRKLLSVGAVREVGKDVKRSSKGGKQATLLGFVADFRLTLAVDIGRTKIVAAMIDLDGNIGASHTVSLRENMSKEEFMSLLFEAIGGVIEVGPKEKIIGIGVGIPGVIGSNNGVADFIPVLSLRNVPIKSWIEEQFGIETFCENDAALQALSESWKGVAEGKKNVVVINLGAGIGSGVIIDGRLYTGSTGRAGELGYLISNWDNTYYRESFFGELEEKLSGVCLERKLDEFGYHGFTATDLFERDIDDERLRDLIYQGCKSLALALCNLISILNPDIVVMTGGIGYNQFELLTKYTIPLIKNILPNEFVGSVDFARSKFPSEGVLIGAGYLVQKKTFL
>NC_017934.1|WP_014731676.1|2465044_2467144_-|beta-galactosidase
MATVKIEDQKFKVDGKEISMYSGSVHYWRSKPEAWSGILDKVKDMGFNAITTYIPWEIHELQRGVFDFGEVEPSRDIDRFLTLCEEKGLYFAVRPGPQINSELTWFGFPERILEDPKLQARNAKGGKVVLTQVPRPIPALAYHSEEFLAEVDLWYDAIFSILEKHQPPKGNLVAVQVDNEMGFFFNVNPYSTDYSDSSKALYRSFLKEKYNTVSELNKMYSSNYSGFDEIDPPGRFEGTRKEELRYYLDWIEYREFYLITSMENLGNRMKSRGIHVPLFHNYPHPLGPGGAKGAPTTPFNLPALEEKLGFVGFDIYSRKELYDHVKTIASYVSGCSRFPYIPEFIMGVWPWYIKPGDVTDEVFVTKEALMHGIKEFNRYMLVDRNKWLGSPINRKGVVKEDSYAAHKKVGTNLMKIRWNDFAKCDDVLLVVNRDYDRLEAATTLLPVVGDFLEPVFGFSEYPSSVIVSDENLGFRRPIQQHKSTWFDAFYRALTEGGVVFSLGDTAQSVEALKKHKVLVISAFDYIGKKTADKLAEYIETGGTVVLGPEVPKLDDTFSSESALSKLVSSTTGKPVLNSNGMEIGKKFACGKGSLIQIFELESVSSGLIEILDSVKVFRIDKGKSVADLVLYKGKTSDEYILFVANPSDKKIEIDIPLPSVSESITDIWEEKKEQISAGRLVTEVCAHDIRIFSWKAINA
>NC_017934.1|WP_014731675.1|2464192_2465026_-|hypothetical-protein
MLDKNPLMIDIDVKQWANLHHVVLKGLREKRRIVVIHENGKVQNISHSHEVEVVNPIRKVTDPEMDAKKLFETNEKNVDLVMVLERSHVENYYNEVQSSWKVDEDLDEYMYRMYSLLDCYYPGIVAYPGPASRQFGLQWLLPGKVGYLQFKSVLESFADRGTAVVIAVFENKTELWTSLVLGVDEKGKVSLITSVKQGIVKKDWREEYQDINRWVDENYWKSGLAIYMDKKDFLEISSSKAPSYLFKGLCDKGSIIIDPSTESLKAFIAKYRLHELS
>NC_017934.1|WP_014731674.1|2463411_2464140_-|sugar-ABC-transporter-ATP-binding-protein
MDDVVLECRNIVKHYGNVEALNGVSFELRKNEILGLVGDNGAGKSTLLKIIRGAVQPTSGEILINGKKVEFSSPMDAAEEGIQCVYQDLALVDQMTIVDNFFLGRELREKKLGFIPVLRKKKMENETEQALKQMEFSMDVNKKVSDLSGGQRQAIAVARAVFADPKIVLLDEPTSALSEIAKHEVFKLLKGLKEEHSLIFVTHDLNNTLQLCDRIIILKHGVIEYEGEVTKDLSLEELLSMM
>NC_017934.1|WP_014731673.1|2462432_2463392_-|ABC-transporter-permease
MNYKNLLKRSTANIELFVLLLAAVVLIVVFSILEPRFFSVNNFRILLETMSILGILSLGVNFLLIAGEMDISFTSVLELSAAVVAISSTAHMNTFVSIAFGVLAATAVGLINAFFAVKLKIPSFLVTLGTQVAIGGLVMILCDYRTIIIRDKSFINMFFGRPFANIASAVYWMIGIAIVIWFVLTRTRFGKWVYATGGNPSSARLMGIPTDRVKISLFVTSAILAGIAGFILGSRATSARPAMGTSYLMPAISAPILAGAALTGGQGSAFKTLLAAFVLTIITNGVTLIGLEPAYRDIFMGVILISALSVRYLQNMNRD
>NC_017934.1|WP_014731672.1|2461175_2462408_-|alanine-racemase
MDFLDTIVRRNPSLIQTAVSMHQRNELPANSVVVDLDMVEENAVKILDAAAGRGIHLYFMTKQFGRNPEICRTLNNVGIDKAVAVDLEDGICLQKNGIRVGHIGHLVQIPKASIRYVLSSMAPEVITVFSYEKALQISEVAKDLGIVQNLLIRVVGKGDFFYPFQFGGIEEEDLLETVGKICELPSVKVVGVVSFPCFRFDVKARKTMPMPNLFTLKRTAETLEKELGLRITQINAPGDSSAQMMDQFRELGVTHVEPGNAFTGTTPWHAFEDLPEKPAWLYLSEISHVNGDNAYAIGGGLMSGDSPMGIWSTLYHNHRLNALSGNNSDSILQRKILAERSGYIDYYGTLYGNREVEFSVGDSVIYGLRNQVFVSRANVAIVKGIQSHKPVLLGIFDRLGNPIETSFFGR
>NC_017934.1|WP_014731671.1|2459982_2461143_-|substrate-binding-domain-containing-protein
MLRKSLAIVLLVAFLIVAGSAALAAEKFREVPLELIQLMEKQFHQVWTPAGPSGEEVRGAGDLELTAEEIEKAKSLDLGQYYFMGASLDMTETLNRFGMNKVLASIGKPEISFMGSNSIADQIDQVTTLAGKADEIGFVVAQAWEAVTLGPSFVELAKAGVPQLHNWTTPAGLENEEYYVGLVDADGYGQGAAAAEILAYAMGYKGEVGLIYFALEQWTNVMRLKGAEDTFAKYPDIKVVGKAGFTDPSQSFDLAIGLLQKYPEIDAMWGTWMMGVATGAAEAVLSLGRLGEVVVAAPDLGGKAGAQYIADPENPIIGAAEADCIEMGENSVNAAIKWYLGNTDIAQGYFVSRVYPVVKANLVDVYNKTNLEAIGELPQDVLDLLD
>NC_017934.1|WP_014731670.1|2458455_2459613_-|MFS-transporter
MFSLLLVIIYIAFISLGLPDSLLGSAWPVMKDSFNVPLSFAGIVSMIISGGTIAASLMSDRVTRKLGTGLVTSISVAMTAMALLGFSLSRSFVVICLFAVPYGLGAGAIDAALNNYVALHYASRHMSWLHSFWGVGASISPYIMSFSLGTKLGWRGGYATVSVIQIVLTIILFATLQKWKNGKMDFGDSGKTSSKPLTITQAVKIKGVPSVLIAFFGYCALETTTGLWASTYLVEYRGVDVETEAIFSSLFNPGITVGRFLNGFIVDRFGDKREIRYGISTLTVGAILVGIPFKSEIFALAGLIVIGLSCANLSVIHATPSNFGRENLQAIIGIQKVSTYVGTTFMPPLFGLIANGVNIGLYPIYLAVLAVLMPTITETLNLSIG
>NC_017934.1|WP_014731669.1|2457584_2458430_-|ADP-ribosylglycohydrolase-family-protein
MLGAITGDVVGSRFEFNNHRDKNFELFTEDCFATDDSIMTLAVAKAIMETEKSINKSGIKSRADSDYLSLLRMLAIKYMQEIGRDYPNCGYGGMFGRWVFSDCPEPYNSFGNGAAMRISPVGFVAESEEEAVSLSGAVTSVTHNHREGIKGAEATVMAIFLARHGLSKREIRSRISKDYYPLNFKIDEIRDTYEFSETCQETVPQAIECFLESVSFEDTVRTAVSLGGDSDTIAAITGAIAQAYYGVPDWIRLKTLSYLDRRLRFIYDEWEAFLDRLGIVF
>NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein
MSWELHRVSLKLLSPMHIGWRKIGNLQQTRYYVPGRTLWGALTARLARDYGDFDYSKTGIDVDKSLRFSYFYPSDNEEKIDLLPWERKDEFEWKYIGSTVNTALDLGARIADEGSLHETEYIAPKTRDGKQVYLIGNIFEHKDCALNWEDALSKLQIGGERTYGWGRVETDESKGCVQVAQIDLDGYDIELNEEFPVIKLSRSHSAISHVLADNQIDSSALSGNIEPLIGLETTREERFGAEISAAQICWTPGTKFSKDHTFLIGEKGIWKSKS
>NC_017934.1|WP_014731681.1|2477496_2477895_-|hypothetical-protein
MKNLDYFAAKSGQKILAALESMDKKELEKLINDILLVLHGNGVYACILYLYAREKKKTETAEKLAKEMLGSVRESLGIDFEDLNEKMNNPEDVLRVVNEKICNNTGSLFLVKDLWERTLVYARYGAKAKVKN
>NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MSNELYSEEKFIFMTLDPIHIGTGGTNLGIVDNTIIREAGSNIPIIPGTSLSGAAKMYAAMLMGDLDAAGSKKPKSTENPVSYTFGYINSSGSKQTSKAGVVSFSDARIVLFPVCSSEGTIWVTTRAMLNEIGFDMKDLGPDEEKAYHLGGTDENSKIKIGWLFIDVENITIEKPKLGGLAEKDEWKVVEQKIYIVSDKLFTQIVNDNLETRTSVAINPETGAAEDQALFTYEAIPRATWLISAVIQDDYKIEGFSDSMKEDKYKENGKINCWKSPMDVVRAGFKIIEFMGIGGMTTRGFGRMKIISGGDNQ
>NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein
MTKSLKILKDNRDNLLKIELAGWLHDMYKCSDEHVDKQSVEPVLSMNVGKAFYFGLMNDFDISFKGSLKESVRVTELIEKGRPGKTTMEDKNLSLLVKYLGRCHGAAHIEKEESKTSLESAELKELMKNKNDSKRKLKNVQRSLSDKEKNADSVLRKHGFVNPELVAKIEEDKAKIKLISNELQDIENMINLVSKKQKVDSVKQNRHDTFISSIFGYESRIVSNLTARFKEILDNSKPPEYGDVGAISRVFSEALGDTRRPANEITLEDWSFIVATLFKSAVAGALLETENGREPVSADKLRWRFLSVRISGEQALGNSTSISDLLARKNWINEGLSRVKKLLEEEYPLGNEVYRDENGSIFVVPDIEDILEYVLDDTTETLEKRIRVKLDFRGEITPEIAISEPWWGQKPILPSGISPEAWQEGDKIPPIGTIISKQPFSPADPEEISTYWSQNQRNQICRISWLRPEEDKTRHVSEFWASEIKGRAETWLKEKNTTIWIDEIADSNSKIALVSAKLAISNWIGEEPGKLSLIRTLNYETPPVSKHFEKCAKTPSFARVRRVWETTSKFWDEALAEIKEVIDPITERLVLKVRTNNLSLPTNNAYEAKVNETKFNETKFTETKFTVFYENKNPKGADGLENFVIIENLELLAKKLPVEIKTDSRKDLVDALLEGLKGKNIDFFNSNDPSVVLASSRIDGIEIESCNYTPVIEITKDPERFMVLVPADKALEAAKKIKEKYEREMGKVRNRLPMNLGIVYAGYHTALPAIMDAGRRMMQIDNEEKTWILMKQPEELSDYFELTFQGNQFWKIPSKMGDCSEDVWYPYFYVLNAEAKPEKRLLSFKGPSGNWLVHVSELKEGDIVQVTPSYFDFEYLSSASQRFEISYTNDCRRRSNDRKQRPYYLDDLDEIERVWAIISTKLSNSQIKKLNTLVEEKRRDWALSTENEDDTFNSYVENVVENLKWKQPLSKHEKEKLVDFCVNGKFVDVLEIHMSIMKDKSEVAE
>NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein
MILDCNSNTLFEIKKDSIISELTDELQKNKPNENVLSKILRKLGDSELLITFKYLEAIGYSDGENCVKQVYVRRRKNADYGCSFAKETFNKIDATALDILPLYSFIIEFDFTLKKPYISKDDENFTIIENSIKRERILGCPYIPGSTWKGCLRSALWHEGMKEDDEQITRIFGNERQNKESFRQGRLHFFPSFFDKVDYEIVNPHDRKTRTGTVPILIESIPSGSNSKFSLLYVPFDLAGKEKEESAKQMLEDLKVIAKGIEAMFTVYGFGAKTSSGYGIAKINDGFISINAKDNKVKIEPELPKSFSLNEAKTNLRSTLKNHLNSSPERGFIEKRFDTLMSFKESVGKAIEVLI
>NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MESGPITFRVKTLTPLWTGGSDGKMDRVHETGIIGSIRWWYEVIARGLGYYVCDPTSDNRCKLSGKENDGEERISKLCPACYLFGTTGWKRMFSLSVTVDGKQPVRGNEPFSQATTNNINKNWLSKIFEKNLYDRDFFGSLELRVFPRCDRNQIEKQLKAVLSIMSNFGSLGAKPQFGYGLFELTDDAEETKESLRIINRFLKENCFVKKSGDEKGFSLKNYWKIETEVGKSLPPANLEYLGSEVKNSYIPMSFDVRYMLRKEYFGKCGSKKATAEIFGRTKGDKSASKVFVSSFYKEDQKNEKYKLRIWGFTARAVSEIIREAIERDYQTNSDGEIFSFGEMLSEVTEIDS
>NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6
MTADGRKKTYFYNPAEKDFAIQIQENLNRKASALGNSGRARESFSFKLVSRPAQRIVKYKDFTQIAWDFRFELNADPVLISTAYDWGLGSKNAQGFGMIKINVGDS
>NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2
MFILLVYDIGEKRVNKALKICRQYLDWVQNSVFEGELTKAGLETLKKRLGKIMNKEEDSVRIYKLRSEDYLTMEILGIDKKQVADDGIL
>NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRMLYLFTSGKLLRMNNTLVFEKEDGKKVHLPVEQTDSICAFGEIDLNKRVLEFLTQKQIPLHFFNRYDYYSGTYYPREHLNSGFLILQQANFYNDGKKRTDLAKRFVRGSMQNMLSVLSYYNRRGKDLEREIEGLNALKERLEDTGTIDEAMAIEGNFRDLYYKCFDTIIDDSSFEFVSRTRQPPLNRLNALISFGNTMLYTTVLGEIYRTHLDPRIGYLHTTNFRSFSLNLDVAEVFKPILVDRLIFAMINKKQIQAKHFAKHLEGIYMNDSGKEIFVRAYDEKLKTTIKHPGLKRSVSYRYLIRLELYKIEKQITGERGYIPWKE
>NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4
MIDINGSLVLSYTNCRREAWLMAHRIIPEQDNTSMSLGRLIHEASYENRGEKDVSIDNIKLDMVEEKKGKTIVSEIKKSKYSLEGARDQLLFYLLRLKEMGVQAEGQLLVPKEKKKITITLTEEEEERIKKLCEEIQKLVEGPIPEIERAQNKCKNCAYYTYCWV

Crispr_ID: NC_017934_10

• CRISPR_ID: NC_017934_10
• CRISPR_location: 2484839-2491949
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 107 spacers
• Cas_protein_info: cas6,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1

Consensus repeat of NC_017934_10

Consensus_repeat	Method
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	PILER-CR
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CRISPRCasFinder
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CRT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	PILER-CR

spacers of NC_017934_10

>10.1|2484869|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TTCATTTTATATTTGACTGATGGTAGTGTAAGCAC
>10.2|2484934|34|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TTAGCTGGGCAACACTTAGAACTATAGATGATTT
>10.3|2484998|36|NC_017934|PILER-CR,CRISPRCasFinder,CRT
CTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCA
>10.4|2485064|38|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTG
>10.5|2485132|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TATGGCGCAGAAATCTTTCTCATGTACTTCGTTGA
>10.6|2485197|34|NC_017934|PILER-CR,CRISPRCasFinder,CRT
CTTAAAGTCACGATCGAAGGAGCAGATGAGCTCA
>10.7|2485261|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT
GCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCA
>10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TGAAACAGAAGAACATCAAGGGCGTGAAGTATG
>10.9|2485389|38|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TTATCACGTGCGATTATATGATTGTTGCATATAACGAA
>10.10|2485457|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT
GCTATCAACGTTGAAAATTACAATTATAGTATGTA
>10.11|2485522|38|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGA
>10.12|2485590|40|NC_017934|PILER-CR,CRISPRCasFinder,CRT
TGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGAT
>10.13|2485660|38|NC_017934|PILER-CR,CRISPRCasFinder,CRT
AAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCA
>10.14|2485728|36|NC_017934|PILER-CR,CRISPRCasFinder,CRT
GGGAAGTAATCCGGGGAATAATCTGGGGAACATTAA
>10.15|2485794|35|NC_017934|CRISPRCasFinder,CRT
GCGGCGTATTACGAAGGCCGTCAACAGCTACTAAA
>10.16|2485859|32|NC_017934|CRISPRCasFinder,CRT
TGGAAGCAGCTTGAAATCTCTAAGATTCCTGC
>10.17|2485921|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAA
>10.18|2485989|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAAATCTTAGTAACATCAGGACCAGAGGAAATTG
>10.19|2486053|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATAGAAGGAGACGACGGACCAGTAGTATCAAGCGT
>10.20|2486119|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CCGAAGACATACGAGACACATTGCTCGACTGGATGAGAC
>10.21|2486188|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGCTAAATGTGAGAACTGCCAACGATATTTCTTCA
>10.22|2486254|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGA
>10.23|2486320|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTC
>10.24|2486386|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACTTTCTTGACTTTCACTTACTGAAAGTTGTACAA
>10.25|2486451|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACT
>10.26|2486516|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAG
>10.27|2486585|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ACGCAATGTGTGACACATTCAATCTTGGTTTTGACGA
>10.28|2486652|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CCTTCTTCGATTCATCCTTCATCATTTCTTTCAGAT
>10.29|2486718|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCAT
>10.30|2486785|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCGAATACGACACAGAATGGACAAGGCATGATTACGA
>10.31|2486852|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAG
>10.32|2486920|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTTGAGAATCGTGGGAAGAATCTATGGAAACAAGA
>10.33|2486985|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGA
>10.34|2487050|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCA
>10.35|2487117|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAA
>10.36|2487186|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTA
>10.37|2487253|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGA
>10.38|2487319|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACA
>10.39|2487384|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCTTCGGTTATCTCTCCGAACTCCACACCCCAGT
>10.40|2487448|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTGATGTTACTACTACCCATATCACCAATGTTACACA
>10.41|2487515|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTAACTTCAAAAAGTGCCTCGCATCGCACGAGGC
>10.42|2487579|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCA
>10.43|2487645|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGAGATATATGACTTGTTGAAAGGAGAGATAGAC
>10.44|2487710|40|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGG
>10.45|2487780|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATAAAAGGTCATTGACATACGAATAGCGGCAACAGAA
>10.46|2487847|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGTGTTGCTTCAAAAAAACACAGCAAAACAAATAG
>10.47|2487912|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TACTATACCAGGATAGACTAACCCATACTATCACAC
>10.48|2487978|41|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAA
>10.49|2488049|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAG
>10.50|2488116|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAA
>10.51|2488182|41|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCT
>10.52|2488253|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGA
>10.53|2488320|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAA
>10.54|2488386|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAA
>10.55|2488453|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGC
>10.56|2488519|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGAT
>10.57|2488586|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGA
>10.58|2488651|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CGGCAAGAGATACCCTTATGTTCGGAGGTTGGATAC
>10.59|2488717|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGATGAGCGAAATAGACCGGCTCTTGCCACAAGC
>10.60|2488782|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCGTAGCTTGCTCCCATTGAAATATGAAATCGAAA
>10.61|2488847|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTA
>10.62|2488913|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTG
>10.63|2488980|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGA
>10.64|2489046|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCA
>10.65|2489112|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGT
>10.66|2489178|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGA
>10.67|2489242|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAA
>10.68|2489308|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AATGACCCAAGCGGGGTGGATACCTTGTATGATTC
>10.69|2489373|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGA
>10.70|2489440|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTG
>10.71|2489509|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGA
>10.72|2489576|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATTGATGAAAGGCTGGATAGAGTCGAAGAGAACA
>10.73|2489641|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGAGACTCTTTGGCATTTCTATTCCTTCTGGCATAT
>10.74|2489707|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCA
>10.75|2489773|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTGGCCAATCGTACTCCGTTACATACAAGGAAAG
>10.76|2489837|40|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCA
>10.77|2489907|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TTGGCAGGATTGATCGACTCTGACGGCACCGTCAATA
>10.78|2489974|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTA
>10.79|2490042|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAAGATAGACGAACTCTTCGGCATTACGCAGCGCA
>10.80|2490107|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTG
>10.81|2490172|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTGATAGGAAATTCAGGACTTCAAATCTATATGCT
>10.82|2490237|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCA
>10.83|2490303|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AAGTGCTACTGGATTCCCAGATGTACCATTTCGTA
>10.84|2490368|40|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCA
>10.85|2490438|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTCATTTTCATGCACTCGAAGATCTGGTATTCGGA
>10.86|2490503|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATGAACTTGGGGTGCATGCTATGCCCCTGAACAGT
>10.87|2490568|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAA
>10.88|2490635|39|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAG
>10.89|2490704|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTCAGAATCGGGCCTTGATATACGTGTCAGTGGA
>10.90|2490768|34|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GAGATATCATTCATCAGCAGCGACCCCTCCGATG
>10.91|2490832|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCG
>10.92|2490898|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TATCGTATGTATGTTGCCATCTTCGAGATTGCAGG
>10.93|2490963|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCTTTTGTGGCAACAATATAATTCCAAGGCTTACG
>10.94|2491028|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATTGCCATCAGTACAAATGCCATATCGAGCCTCCT
>10.95|2491093|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GGTAGTAGAAACGTGACATATATCACGCCATGAACA
>10.96|2491159|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TCAACTGTTTGAATACGAGTGACTGATAGATTAGA
>10.97|2491224|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AGCCGTATCTGGTGGATATTACCATTCTTTAGGAA
>10.98|2491289|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATT
>10.99|2491355|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGA
>10.100|2491422|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGCTTTACATGCGCATTGAAACCACCAAACGCTG
>10.101|2491487|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CCAGAAGCCACTGCATCTTAGAACTGCAATCGATGT
>10.102|2491553|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
ATAGGCTGTTGGAAAGAATCACATTCCCATATTCTG
>10.103|2491619|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
AATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAA
>10.104|2491685|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CAACGCCCATATTCTCGGCAAATCTGAGCAGCAGG
>10.105|2491750|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
CTTTGGTGATCTCTACAAAATTGCATCTGTTAATAA
>10.106|2491816|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR
TGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTC
>10.107|2491882|38|NC_017934|CRISPRCasFinder,CRT,PILER-CR
GTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGA

CRISPR arrays and Neighbor proteins around NC_017934_10

CRISPR arrays

The CRISPR arrays of NC_017934_10

>merge|NC_017934|10|2484839-2491949|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTCAATTCCTCATAGGTAGTCTGGAAGCTTCATTTTATATTTGACTGATGGTAGTGTAAGCACGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTAGCTGGGCAACACTTAGAACTATAGATGATTTGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTGGGTTCAATTCCTCATAGGTAGTCTGGAAGCTATGGCGCAGAAATCTTTCTCATGTACTTCGTTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTTAAAGTCACGATCGAAGGAGCAGATGAGCTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGAAACAGAAGAACATCAAGGGCGTGAAGTATGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTATCACGTGCGATTATATGATTGTTGCATATAACGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCTATCAACGTTGAAAATTACAATTATAGTATGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGATGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGGAAGTAATCCGGGGAATAATCTGGGGAACATTAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGGCGTATTACGAAGGCCGTCAACAGCTACTAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGAAGCAGCTTGAAATCTCTAAGATTCCTGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAAATCTTAGTAACATCAGGACCAGAGGAAATTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATAGAAGGAGACGACGGACCAGTAGTATCAAGCGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCCCGAAGACATACGAGACACATTGCTCGACTGGATGAGACGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGCTAAATGTGAGAACTGCCAACGATATTTCTTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTCGTTTCAATTCCTCATAGGTAGTCTGGAAGCACTTTCTTGACTTTCACTTACTGAAAGTTGTACAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACTGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCACGCAATGTGTGACACATTCAATCTTGGTTTTGACGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCCTTCTTCGATTCATCCTTCATCATTTCTTTCAGATGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCATGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCGAATACGACACAGAATGGACAAGGCATGATTACGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTTGAGAATCGTGGGAAGAATCTATGGAAACAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCTTCGGTTATCTCTCCGAACTCCACACCCCAGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTGATGTTACTACTACCCATATCACCAATGTTACACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTAACTTCAAAAAGTGCCTCGCATCGCACGAGGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGAGATATATGACTTGTTGAAAGGAGAGATAGACGTTTCAATTCCTCATAGGTAGTCTGGAAGCAATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCATAAAAGGTCATTGACATACGAATAGCGGCAACAGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGTGTTGCTTCAAAAAAACACAGCAAAACAAATAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTACTATACCAGGATAGACTAACCCATACTATCACACGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCTGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCCACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGATGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCGGCAAGAGATACCCTTATGTTCGGAGGTTGGATACGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGATGAGCGAAATAGACCGGCTCTTGCCACAAGCGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGTAGCTTGCTCCCATTGAAATATGAAATCGAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAATGACCCAAGCGGGGTGGATACCTTGTATGATTCGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATTGATGAAAGGCTGGATAGAGTCGAAGAGAACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGAGACTCTTTGGCATTTCTATTCCTTCTGGCATATGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTGGCCAATCGTACTCCGTTACATACAAGGAAAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTTGGCAGGATTGATCGACTCTGACGGCACCGTCAATAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAAGATAGACGAACTCTTCGGCATTACGCAGCGCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTGATAGGAAATTCAGGACTTCAAATCTATATGCTGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAAGTGCTACTGGATTCCCAGATGTACCATTTCGTAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTCATTTTCATGCACTCGAAGATCTGGTATTCGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCATGAACTTGGGGTGCATGCTATGCCCCTGAACAGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTCAGAATCGGGCCTTGATATACGTGTCAGTGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCGAGATATCATTCATCAGCAGCGACCCCTCCGATGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTATCGTATGTATGTTGCCATCTTCGAGATTGCAGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCTTTTGTGGCAACAATATAATTCCAAGGCTTACGGTTTCAATTCCTCATAGGTAGTCTGGAAGCATTGCCATCAGTACAAATGCCATATCGAGCCTCCTGTTTCAATTCCTCATAGGTAGTCTGGAAGCGGTAGTAGAAACGTGACATATATCACGCCATGAACAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTCAACTGTTTGAATACGAGTGACTGATAGATTAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCAGCCGTATCTGGTGGATATTACCATTCTTTAGGAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATTGTTTCAATTCCTCATAGGTAGTCTGGAAGCATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGCTTTACATGCGCATTGAAACCACCAAACGCTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCCAGAAGCCACTGCATCTTAGAACTGCAATCGATGTGTTTCAATTCCTCATAGGTAGTCTGGAAGCATAGGCTGTTGGAAAGAATCACATTCCCATATTCTGGTTTCAATTCCTCATAGGTAGTCTGGAAGCAATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCCAACGCCCATATTCTCGGCAAATCTGAGCAGCAGGGTTTCAATTCCTCATAGGTAGTCTGGAAGCCTTTGGTGATCTCTACAAAATTGCATCTGTTAATAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTCGTTTCAATTCCTCATAGGTAGTCTGGAAGCGTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGAGTTTCAATTCCTCATAGGTAGTCTGGAAGC

>NC_017934|10|7|2484839-2485793|PILER-CR
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTCATTTTATATTTGACTGATGGTAGTGTAAGCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTAGCTGGGCAACACTTAGAACTATAGATGATTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTG
GGTTCAATTCCTCATAGGTAGTCTGGAAGC	TATGGCGCAGAAATCTTTCTCATGTACTTCGTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTAAAGTCACGATCGAAGGAGCAGATGAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGAAGAACATCAAGGGCGTGAAGTATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTATCACGTGCGATTATATGATTGTTGCATATAACGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCTATCAACGTTGAAAATTACAATTATAGTATGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAAGTAATCCGGGGAATAATCTGGGGAACATTAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGGCGTATTACGAAGGCCGTCAACAGCTACTAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGAAGCAGCTTGAAATCTCTAAGATTCCTGCGTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAATCTTAGTAACATCAGGACCAGAGGAAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAAGGAGACGACGGACCAGTAGTATCAAGCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGAAGACATACGAGACACATTGCTCGACTGGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTAAATGTGAGAACTGCCAACGATATTTCTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTTTCTTGACTTTCACTTACTGAAAGTTGTACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGCAATGTGTGACACATTCAATCTTGGTTTTGACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTTCTTCGATTCATCCTTCATCATTTCTTTCAGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGAATACGACACAGAATGGACAAGGCATGATTACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTGAGAATCGTGGGAAGAATCTATGGAAACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTCGGTTATCTCTCCGAACTCCACACCCCAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGATGTTACTACTACCCATATCACCAATGTTACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTAACTTCAAAAAGTGCCTCGCATCGCACGAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGATATATGACTTGTTGAAAGGAGAGATAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAAAGGTCATTGACATACGAATAGCGGCAACAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTGTTGCTTCAAAAAAACACAGCAAAACAAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACTATACCAGGATAGACTAACCCATACTATCACAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCAAGAGATACCCTTATGTTCGGAGGTTGGATAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATGAGCGAAATAGACCGGCTCTTGCCACAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGTAGCTTGCTCCCATTGAAATATGAAATCGAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATGACCCAAGCGGGGTGGATACCTTGTATGATTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTGATGAAAGGCTGGATAGAGTCGAAGAGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACTCTTTGGCATTTCTATTCCTTCTGGCATAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGCCAATCGTACTCCGTTACATACAAGGAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGCAGGATTGATCGACTCTGACGGCACCGTCAATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGATAGACGAACTCTTCGGCATTACGCAGCGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGATAGGAAATTCAGGACTTCAAATCTATATGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTGCTACTGGATTCCCAGATGTACCATTTCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCATTTTCATGCACTCGAAGATCTGGTATTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGAACTTGGGGTGCATGCTATGCCCCTGAACAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGAATCGGGCCTTGATATACGTGTCAGTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATATCATTCATCAGCAGCGACCCCTCCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TATCGTATGTATGTTGCCATCTTCGAGATTGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTTTGTGGCAACAATATAATTCCAAGGCTTACG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATTGCCATCAGTACAAATGCCATATCGAGCCTCCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTAGTAGAAACGTGACATATATCACGCCATGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCAACTGTTTGAATACGAGTGACTGATAGATTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTTTACATGCGCATTGAAACCACCAAACGCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCAGAAGCCACTGCATCTTAGAACTGCAATCGATGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAGGCTGTTGGAAAGAATCACATTCCCATATTCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAACGCCCATATTCTCGGCAAATCTGAGCAGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGGTGATCTCTACAAAATTGCATCTGTTAATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGA


>NC_017934|10|10|2484839-2491949|CRISPRCasFinder
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTCATTTTATATTTGACTGATGGTAGTGTAAGCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTAGCTGGGCAACACTTAGAACTATAGATGATTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTG
GGTTCAATTCCTCATAGGTAGTCTGGAAGC	TATGGCGCAGAAATCTTTCTCATGTACTTCGTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTAAAGTCACGATCGAAGGAGCAGATGAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGAAGAACATCAAGGGCGTGAAGTATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTATCACGTGCGATTATATGATTGTTGCATATAACGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCTATCAACGTTGAAAATTACAATTATAGTATGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAAGTAATCCGGGGAATAATCTGGGGAACATTAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGGCGTATTACGAAGGCCGTCAACAGCTACTAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGAAGCAGCTTGAAATCTCTAAGATTCCTGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAATCTTAGTAACATCAGGACCAGAGGAAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAAGGAGACGACGGACCAGTAGTATCAAGCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGAAGACATACGAGACACATTGCTCGACTGGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTAAATGTGAGAACTGCCAACGATATTTCTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTTTCTTGACTTTCACTTACTGAAAGTTGTACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGCAATGTGTGACACATTCAATCTTGGTTTTGACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTTCTTCGATTCATCCTTCATCATTTCTTTCAGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGAATACGACACAGAATGGACAAGGCATGATTACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTGAGAATCGTGGGAAGAATCTATGGAAACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTCGGTTATCTCTCCGAACTCCACACCCCAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGATGTTACTACTACCCATATCACCAATGTTACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTAACTTCAAAAAGTGCCTCGCATCGCACGAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGATATATGACTTGTTGAAAGGAGAGATAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAAAGGTCATTGACATACGAATAGCGGCAACAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTGTTGCTTCAAAAAAACACAGCAAAACAAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACTATACCAGGATAGACTAACCCATACTATCACAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCAAGAGATACCCTTATGTTCGGAGGTTGGATAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATGAGCGAAATAGACCGGCTCTTGCCACAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGTAGCTTGCTCCCATTGAAATATGAAATCGAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATGACCCAAGCGGGGTGGATACCTTGTATGATTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTGATGAAAGGCTGGATAGAGTCGAAGAGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACTCTTTGGCATTTCTATTCCTTCTGGCATAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGCCAATCGTACTCCGTTACATACAAGGAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGCAGGATTGATCGACTCTGACGGCACCGTCAATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGATAGACGAACTCTTCGGCATTACGCAGCGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGATAGGAAATTCAGGACTTCAAATCTATATGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTGCTACTGGATTCCCAGATGTACCATTTCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCATTTTCATGCACTCGAAGATCTGGTATTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGAACTTGGGGTGCATGCTATGCCCCTGAACAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGAATCGGGCCTTGATATACGTGTCAGTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATATCATTCATCAGCAGCGACCCCTCCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TATCGTATGTATGTTGCCATCTTCGAGATTGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTTTGTGGCAACAATATAATTCCAAGGCTTACG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATTGCCATCAGTACAAATGCCATATCGAGCCTCCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTAGTAGAAACGTGACATATATCACGCCATGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCAACTGTTTGAATACGAGTGACTGATAGATTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTTTACATGCGCATTGAAACCACCAAACGCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCAGAAGCCACTGCATCTTAGAACTGCAATCGATGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAGGCTGTTGGAAAGAATCACATTCCCATATTCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAACGCCCATATTCTCGGCAAATCTGAGCAGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGGTGATCTCTACAAAATTGCATCTGTTAATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC

>NC_017934|10|7|2484839-2491949|CRT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTCATTTTATATTTGACTGATGGTAGTGTAAGCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTAGCTGGGCAACACTTAGAACTATAGATGATTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTG
GGTTCAATTCCTCATAGGTAGTCTGGAAGC	TATGGCGCAGAAATCTTTCTCATGTACTTCGTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTAAAGTCACGATCGAAGGAGCAGATGAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGAAGAACATCAAGGGCGTGAAGTATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTATCACGTGCGATTATATGATTGTTGCATATAACGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCTATCAACGTTGAAAATTACAATTATAGTATGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAAGTAATCCGGGGAATAATCTGGGGAACATTAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGGCGTATTACGAAGGCCGTCAACAGCTACTAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGAAGCAGCTTGAAATCTCTAAGATTCCTGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAATCTTAGTAACATCAGGACCAGAGGAAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAAGGAGACGACGGACCAGTAGTATCAAGCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGAAGACATACGAGACACATTGCTCGACTGGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTAAATGTGAGAACTGCCAACGATATTTCTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTTTCTTGACTTTCACTTACTGAAAGTTGTACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGCAATGTGTGACACATTCAATCTTGGTTTTGACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTTCTTCGATTCATCCTTCATCATTTCTTTCAGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGAATACGACACAGAATGGACAAGGCATGATTACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTGAGAATCGTGGGAAGAATCTATGGAAACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTCGGTTATCTCTCCGAACTCCACACCCCAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGATGTTACTACTACCCATATCACCAATGTTACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTAACTTCAAAAAGTGCCTCGCATCGCACGAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGATATATGACTTGTTGAAAGGAGAGATAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAAAGGTCATTGACATACGAATAGCGGCAACAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTGTTGCTTCAAAAAAACACAGCAAAACAAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACTATACCAGGATAGACTAACCCATACTATCACAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCAAGAGATACCCTTATGTTCGGAGGTTGGATAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATGAGCGAAATAGACCGGCTCTTGCCACAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGTAGCTTGCTCCCATTGAAATATGAAATCGAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATGACCCAAGCGGGGTGGATACCTTGTATGATTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTGATGAAAGGCTGGATAGAGTCGAAGAGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACTCTTTGGCATTTCTATTCCTTCTGGCATAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGCCAATCGTACTCCGTTACATACAAGGAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGCAGGATTGATCGACTCTGACGGCACCGTCAATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGATAGACGAACTCTTCGGCATTACGCAGCGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGATAGGAAATTCAGGACTTCAAATCTATATGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTGCTACTGGATTCCCAGATGTACCATTTCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCATTTTCATGCACTCGAAGATCTGGTATTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGAACTTGGGGTGCATGCTATGCCCCTGAACAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGAATCGGGCCTTGATATACGTGTCAGTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATATCATTCATCAGCAGCGACCCCTCCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TATCGTATGTATGTTGCCATCTTCGAGATTGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTTTGTGGCAACAATATAATTCCAAGGCTTACG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATTGCCATCAGTACAAATGCCATATCGAGCCTCCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTAGTAGAAACGTGACATATATCACGCCATGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCAACTGTTTGAATACGAGTGACTGATAGATTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTTTACATGCGCATTGAAACCACCAAACGCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCAGAAGCCACTGCATCTTAGAACTGCAATCGATGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAGGCTGTTGGAAAGAATCACATTCCCATATTCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAACGCCCATATTCTCGGCAAATCTGAGCAGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGGTGATCTCTACAAAATTGCATCTGTTAATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC

>NC_017934|10|8|2485891-2491949|PILER-CR
	TTCATTTTATATTTGACTGATGGTAGTGTAAGCAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTAGCTGGGCAACACTTAGAACTATAGATGATTT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTATCTTGAGTCTTAAAAGCGATGAACAAAGAAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGATCAGAATGTACATTGTTCTCAGTGTCACTCGTG
GGTTCAATTCCTCATAGGTAGTCTGGAAGC	TATGGCGCAGAAATCTTTCTCATGTACTTCGTTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTAAAGTCACGATCGAAGGAGCAGATGAGCTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCACGTTCATTGCAAAGCTCTGCTGCTGCATGGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGAAGAACATCAAGGGCGTGAAGTATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTATCACGTGCGATTATATGATTGTTGCATATAACGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCTATCAACGTTGAAAATTACAATTATAGTATGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTAGTACCATCCGAAACATTATCAACGGTAGTGCCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGGAGAAACTAAATTCAGAATCTATTGTCCAGAAGCGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTAGTCGGTGGAGTAAGAGATCTTGTCACGTTCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGGAAGTAATCCGGGGAATAATCTGGGGAACATTAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGCGCGGCGTATTACGAAGGCCGTCAACAGCTACTAAAGTTTCAATTCCTCATAGGTAGTCTGGAAGCTGGAAGCAGCTTGAAATCTCTAAGATTCCTGCGTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGGAATTTTGGAGATCTGGAATTGGTTCCAAAGGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAATCTTAGTAACATCAGGACCAGAGGAAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATAGAAGGAGACGACGGACCAGTAGTATCAAGCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCGAAGACATACGAGACACATTGCTCGACTGGATGAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTAAATGTGAGAACTGCCAACGATATTTCTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGATCTCGCTTCGCAAATTGATCGAGTTCGTTTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCCGCCATTACCTTCGATGCACCGTCAGCCCCCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACTTTCTTGACTTTCACTTACTGAAAGTTGTACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTCCAGAGCCAAAAGGTTGTGGAGAGATTGAACT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGACATAGACTGTTGTGCCAGACTTTGTTTCAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ACGCAATGTGTGACACATTCAATCTTGGTTTTGACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCTTCTTCGATTCATCCTTCATCATTTCTTTCAGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAACAGGCCGGAATGGTTAATCTTCTCTATCTCAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGAATACGACACAGAATGGACAAGGCATGATTACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGAGTTTCGGCAGTTCTAACAGCACCAGCAAATACAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTTGAGAATCGTGGGAAGAATCTATGGAAACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTAGAAGAGAACCTTTCCCCTGTCTCCTGCAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGGGGGCCTCCCTCTCCAGGGAGTTGTTCAGTTTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATTCTTTCGGCACTGAAACCCCACCTGGGCTCAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGGTGGAGGAAACATGGCAGGCTGGCATCAGCCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACGCTAAAGAGCACGGAATAGAGGTGGTAGTATGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCTCCCTTTGAGCACCTGGTGTTTACCTTTCACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTCGGTTATCTCTCCGAACTCCACACCCCAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGATGTTACTACTACCCATATCACCAATGTTACACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTAACTTCAAAAAGTGCCTCGCATCGCACGAGGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGTCAATCCGGAGTTAAACCAGTCAACCTCATCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGATATATGACTTGTTGAAAGGAGAGATAGAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATATCTTCAAGGATTACCTGAGTTATCTCTGGTCCTTGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAAAAGGTCATTGACATACGAATAGCGGCAACAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGTGTTGCTTCAAAAAAACACAGCAAAACAAATAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TACTATACCAGGATAGACTAACCCATACTATCACAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGGTAGCTGTAGCTTGTGGGGGTTACCATTCTCTAGCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACGGGCCTCCTCCAGGGCCGCTTCTACTGTAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCCCTCTCCAAAACCCCAAGGTTGGTTCGTATATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TAAAGATGATGCCGAGAAAGAAAACATTGGTAAAGGAGGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGCAGTTATGGAAGCGCCCTTTGAAATGCTGCACGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCAAGAACTGTTCAAGCGAAAGTAGTGTCTGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGCAGAACTGCATATTGAGGAGTTCAATACAGAGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCGATCATTTCGAAGTCTTGCATGGTTTTGAGTGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CACTAACTTCTTCTGCTTTCCTTTCTTCTTCACGGAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGAAATCTCTCTTTCCTTGCCTGTATCGTTCCTGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CGGCAAGAGATACCCTTATGTTCGGAGGTTGGATAC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATGAGCGAAATAGACCGGCTCTTGCCACAAGC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGTAGCTTGCTCCCATTGAAATATGAAATCGAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCCAGATCGCTGCATCTTCCATAGGCCTCTATCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGTTCTAGTTGAGAAGGGTCTTTATCTCGAAGAATTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCGTTGTAACTGCCTGTCATGATTCGATTCCGGGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATCAAGAGCGAACCGAAGAAGCAATCTCAAAAGCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAAGGCCACGAGTGAGAAGGAAGCGGAAACGATCGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAGAGTAGTTTGAAGAGTACCGAGCTTTGCGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGGATTACAGGAAGAAGAGATTGCGGGAGGCAAAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATGACCCAAGCGGGGTGGATACCTTGTATGATTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCACCTGCCAGTTCCAGTTCCCTGGCAATCCTACGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GACCCGGCCGCGTTAGCGGTCTCTTCCAGTCTGTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGCGATAGCGAGGGAATAGCATGGAACCGCTGAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTGATGAAAGGCTGGATAGAGTCGAAGAGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGAGACTCTTTGGCATTTCTATTCCTTCTGGCATAT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTTCCAATGGTAAGTCTTTTGAAAACGATACCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTGGCCAATCGTACTCCGTTACATACAAGGAAAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GATTCTGAAAAGGAGTTGGGCCATTTTCAGGCCCTCCCCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TTGGCAGGATTGATCGACTCTGACGGCACCGTCAATA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GCGATAAGTGATCTCAAGTCTCGAAACATGATCACCTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAAGATAGACGAACTCTTCGGCATTACGCAGCGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCACATCGCACCTCCTCTCAGTCTTTTCTTCCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTGATAGGAAATTCAGGACTTCAAATCTATATGCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGCCAACGGCTCAAATCATGGCTCGCCTGTGAGTCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AAGTGCTACTGGATTCCCAGATGTACCATTTCGTA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGAAGCTGGAGAAAGAGTCCGCGACTCTTTTCGACAGCA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCATTTTCATGCACTCGAAGATCTGGTATTCGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGAACTTGGGGTGCATGCTATGCCCCTGAACAGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGCTTCTTGAATTGGCGGGTTTGTCTCACACCAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTACAGCGTCATCGAGAGAGACAGAAAGCACTAGCCAG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTCAGAATCGGGCCTTGATATACGTGTCAGTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GAGATATCATTCATCAGCAGCGACCCCTCCGATG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTCTGTTGGCTGTATCACCTAGACCTAGTTGTCCG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TATCGTATGTATGTTGCCATCTTCGAGATTGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCTTTTGTGGCAACAATATAATTCCAAGGCTTACG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATTGCCATCAGTACAAATGCCATATCGAGCCTCCT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GGTAGTAGAAACGTGACATATATCACGCCATGAACA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TCAACTGTTTGAATACGAGTGACTGATAGATTAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AGCCGTATCTGGTGGATATTACCATTCTTTAGGAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGATCTTCCCATTCTTTAGCAATGAAGGAGTGATT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATGTTGATTACCTTTGCGTTCATGTCGTCTGACAAGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCTTTACATGCGCATTGAAACCACCAAACGCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CCAGAAGCCACTGCATCTTAGAACTGCAATCGATGT
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	ATAGGCTGTTGGAAAGAATCACATTCCCATATTCTG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	AATTCACCGCCGGTCTTCCGAGTTGGAGATGAACAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CAACGCCCATATTCTCGGCAAATCTGAGCAGCAGG
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	CTTTGGTGATCTCTACAAAATTGCATCTGTTAATAA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	TGGCCAAGGCTTCACCGGTAAGGCCGAGATTTTCTC
GTTTCAATTCCTCATAGGTAGTCTGGAAGC	GTAGAAATCTCACACGAGTCGGCACCGGTAGAGCTGGA
GTTTCAATTCCTCATAGGTAGTCTGGAAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017934.1|WP_014731695.1|2501171_2501414_-|hypothetical-protein	unknown	unknown	unknown
NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl|CDD|376642
NC_017934.1|WP_014731681.1|2477496_2477895_-|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	unknown
NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl|CDD|213662
NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|273859
NC_017934.1|WP_014731676.1|2465044_2467144_-|beta-galactosidase	unknown	unknown	gnl|CDD|366567
NC_017934.1|WP_014731689.1|2493877_2496223_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_017934.1|WP_014731691.1|2496956_2497907_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl|CDD|187821
NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|224255
NC_017934.1|WP_014731690.1|2496219_2496945_-|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl|CDD|131641
NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	gnl|CDD|187832
NC_017934.1|WP_014731678.1|2469362_2470730_+|ATP-binding-protein	unknown	unknown	gnl|CDD|224586
NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	gnl|CDD|377130
NC_017934.1|WP_014731677.1|2467190_2468333_-|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017934.1|WP_014731692.1|2497927_2499682_-|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl|CDD|378190
NC_017934.1|WP_014731693.1|2499686_2500421_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|273848
NC_017934.1|WP_014731694.1|2500811_2500952_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	2.5e-22	74.6	0.0
NC_017934.1|WP_014731681.1|2477496_2477895_-|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	2.2e-36	119.7	3.0
NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	2.7e-78	257.7	0.5
NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	2.7e-27	91.0	2.3
NC_017934.1|WP_014731691.1|2496956_2497907_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	1.6e-88	291.4	0.1
NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	5.4e-46	152.1	0.0
NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	1.4e-173	574.1	28.2
NC_017934.1|WP_014731690.1|2496219_2496945_-|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	2.7e-43	143.0	0.3
NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-31	103.6	0.3
NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	5.6e-84	276.6	0.0
NC_017934.1|WP_014731689.1|2493877_2496223_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	2e-47	156.6	0.3
NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.4e-132	436.4	2.7
NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	3.6e-45	148.7	4.0
NC_017934.1|WP_014731692.1|2497927_2499682_-|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	6.4e-64	211.3	6.9
NC_017934.1|WP_014731693.1|2499686_2500421_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	2.9e-45	149.8	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|376642	pfam01881, Cas_Cas6, CRISPR associated protein Cas6. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers.	1.32175e-18
NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein	gnl|CDD|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	4.70058e-14
NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|273859	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.	1.43372e-19
NC_017934.1|WP_014731676.1|2465044_2467144_-|beta-galactosidase	gnl|CDD|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	5.28372e-40
NC_017934.1|WP_014731689.1|2493877_2496223_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.12349e-36
NC_017934.1|WP_014731691.1|2496956_2497907_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl|CDD|187821	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csh2 family.	1.81051e-86
NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.97496e-44
NC_017934.1|WP_014731690.1|2496219_2496945_-|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	3.27444e-35
NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein	gnl|CDD|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	1.55756e-145
NC_017934.1|WP_014731678.1|2469362_2470730_+|ATP-binding-protein	gnl|CDD|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.41143e-36
NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.19575e-33
NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein	gnl|CDD|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	9.66759e-11
NC_017934.1|WP_014731677.1|2467190_2468333_-|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.93724e-49
NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.46371e-53
NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.3404e-159
NC_017934.1|WP_014731692.1|2497927_2499682_-|TIGR02556-family-CRISPR-associated-protein	gnl|CDD|378190	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This minor cas protein is found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	1.36421e-131
NC_017934.1|WP_014731693.1|2499686_2500421_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.43394e-36

Protein sequences

>NC_017934.1|WP_049794063.1|2484115_2484436_-|CRISPR-associated-endoribonuclease-Cas6
MTADGRKKTYFYNPAEKDFAIQIQENLNRKASALGNSGRARESFSFKLVSRPAQRIVKYKDFTQIAWDFRFELNADPVLISTAYDWGLGSKNAQGFGMIKINVGDS
>NC_017934.1|WP_014731685.1|2482897_2483956_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MESGPITFRVKTLTPLWTGGSDGKMDRVHETGIIGSIRWWYEVIARGLGYYVCDPTSDNRCKLSGKENDGEERISKLCPACYLFGTTGWKRMFSLSVTVDGKQPVRGNEPFSQATTNNINKNWLSKIFEKNLYDRDFFGSLELRVFPRCDRNQIEKQLKAVLSIMSNFGSLGAKPQFGYGLFELTDDAEETKESLRIINRFLKENCFVKKSGDEKGFSLKNYWKIETEVGKSLPPANLEYLGSEVKNSYIPMSFDVRYMLRKEYFGKCGSKKATAEIFGRTKGDKSASKVFVSSFYKEDQKNEKYKLRIWGFTARAVSEIIREAIERDYQTNSDGEIFSFGEMLSEVTEIDS
>NC_017934.1|WP_014731684.1|2481840_2482908_-|hypothetical-protein
MILDCNSNTLFEIKKDSIISELTDELQKNKPNENVLSKILRKLGDSELLITFKYLEAIGYSDGENCVKQVYVRRRKNADYGCSFAKETFNKIDATALDILPLYSFIIEFDFTLKKPYISKDDENFTIIENSIKRERILGCPYIPGSTWKGCLRSALWHEGMKEDDEQITRIFGNERQNKESFRQGRLHFFPSFFDKVDYEIVNPHDRKTRTGTVPILIESIPSGSNSKFSLLYVPFDLAGKEKEESAKQMLEDLKVIAKGIEAMFTVYGFGAKTSSGYGIAKINDGFISINAKDNKVKIEPELPKSFSLNEAKTNLRSTLKNHLNSSPERGFIEKRFDTLMSFKESVGKAIEVLI
>NC_017934.1|WP_014731683.1|2478826_2481844_-|hypothetical-protein
MTKSLKILKDNRDNLLKIELAGWLHDMYKCSDEHVDKQSVEPVLSMNVGKAFYFGLMNDFDISFKGSLKESVRVTELIEKGRPGKTTMEDKNLSLLVKYLGRCHGAAHIEKEESKTSLESAELKELMKNKNDSKRKLKNVQRSLSDKEKNADSVLRKHGFVNPELVAKIEEDKAKIKLISNELQDIENMINLVSKKQKVDSVKQNRHDTFISSIFGYESRIVSNLTARFKEILDNSKPPEYGDVGAISRVFSEALGDTRRPANEITLEDWSFIVATLFKSAVAGALLETENGREPVSADKLRWRFLSVRISGEQALGNSTSISDLLARKNWINEGLSRVKKLLEEEYPLGNEVYRDENGSIFVVPDIEDILEYVLDDTTETLEKRIRVKLDFRGEITPEIAISEPWWGQKPILPSGISPEAWQEGDKIPPIGTIISKQPFSPADPEEISTYWSQNQRNQICRISWLRPEEDKTRHVSEFWASEIKGRAETWLKEKNTTIWIDEIADSNSKIALVSAKLAISNWIGEEPGKLSLIRTLNYETPPVSKHFEKCAKTPSFARVRRVWETTSKFWDEALAEIKEVIDPITERLVLKVRTNNLSLPTNNAYEAKVNETKFNETKFTETKFTVFYENKNPKGADGLENFVIIENLELLAKKLPVEIKTDSRKDLVDALLEGLKGKNIDFFNSNDPSVVLASSRIDGIEIESCNYTPVIEITKDPERFMVLVPADKALEAAKKIKEKYEREMGKVRNRLPMNLGIVYAGYHTALPAIMDAGRRMMQIDNEEKTWILMKQPEELSDYFELTFQGNQFWKIPSKMGDCSEDVWYPYFYVLNAEAKPEKRLLSFKGPSGNWLVHVSELKEGDIVQVTPSYFDFEYLSSASQRFEISYTNDCRRRSNDRKQRPYYLDDLDEIERVWAIISTKLSNSQIKKLNTLVEEKRRDWALSTENEDDTFNSYVENVVENLKWKQPLSKHEKEKLVDFCVNGKFVDVLEIHMSIMKDKSEVAE
>NC_017934.1|WP_014731682.1|2477891_2478830_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MSNELYSEEKFIFMTLDPIHIGTGGTNLGIVDNTIIREAGSNIPIIPGTSLSGAAKMYAAMLMGDLDAAGSKKPKSTENPVSYTFGYINSSGSKQTSKAGVVSFSDARIVLFPVCSSEGTIWVTTRAMLNEIGFDMKDLGPDEEKAYHLGGTDENSKIKIGWLFIDVENITIEKPKLGGLAEKDEWKVVEQKIYIVSDKLFTQIVNDNLETRTSVAINPETGAAEDQALFTYEAIPRATWLISAVIQDDYKIEGFSDSMKEDKYKENGKINCWKSPMDVVRAGFKIIEFMGIGGMTTRGFGRMKIISGGDNQ
>NC_017934.1|WP_014731681.1|2477496_2477895_-|hypothetical-protein
MKNLDYFAAKSGQKILAALESMDKKELEKLINDILLVLHGNGVYACILYLYAREKKKTETAEKLAKEMLGSVRESLGIDFEDLNEKMNNPEDVLRVVNEKICNNTGSLFLVKDLWERTLVYARYGAKAKVKN
>NC_017934.1|WP_014731680.1|2476672_2477497_-|CRISPR-associated-protein
MSWELHRVSLKLLSPMHIGWRKIGNLQQTRYYVPGRTLWGALTARLARDYGDFDYSKTGIDVDKSLRFSYFYPSDNEEKIDLLPWERKDEFEWKYIGSTVNTALDLGARIADEGSLHETEYIAPKTRDGKQVYLIGNIFEHKDCALNWEDALSKLQIGGERTYGWGRVETDESKGCVQVAQIDLDGYDIELNEEFPVIKLSRSHSAISHVLADNQIDSSALSGNIEPLIGLETTREERFGAEISAAQICWTPGTKFSKDHTFLIGEKGIWKSKS
>NC_017934.1|WP_014731678.1|2469362_2470730_+|ATP-binding-protein
MFVGRKRELAYLEERFKTGKPELIILYGRRRVGKTELTKEFLRKKRGIYYLAEKLPENLQLKKLSEKVIEFFDEDIITEFSNWEMLFKYLASKHDRYILVIDEFPYLIEREPGIISSFQKGWDEYLSNSNVFLILTGSSVSVMENSVLGYKSPLYGRRTGQLLLKQFPFNEIGEFFEKKYGFDDLLKIWGTLGGVPFYLEQFDSDLDYYGNVMEKIYNQNEVLFAEAEFLLNDELREPRNYFAILRAISLGKRKLGEIINETGIDKSSIMKYISILNLLGIVEKEVPVGEDPLKSKKGLYRIADNFFRFYFRYVFYYKDLILTDQRERLLSILKDTENQFFALTYEDFARSAVMWISGSNYFEIGRWWDRNAEIDLVGMNREEKRILLGEVKWSERPVTTDIFAALREKAYLPRWDEFKEKEYAIFSRSGFTKALVDEAKSDRSLMLFHGDKRVV
>NC_017934.1|WP_014731677.1|2467190_2468333_-|ROK-family-protein
MRNLHFTERERVILARIRNEGPIARVRIAKKENISKPVVTLGVRKLLSVGAVREVGKDVKRSSKGGKQATLLGFVADFRLTLAVDIGRTKIVAAMIDLDGNIGASHTVSLRENMSKEEFMSLLFEAIGGVIEVGPKEKIIGIGVGIPGVIGSNNGVADFIPVLSLRNVPIKSWIEEQFGIETFCENDAALQALSESWKGVAEGKKNVVVINLGAGIGSGVIIDGRLYTGSTGRAGELGYLISNWDNTYYRESFFGELEEKLSGVCLERKLDEFGYHGFTATDLFERDIDDERLRDLIYQGCKSLALALCNLISILNPDIVVMTGGIGYNQFELLTKYTIPLIKNILPNEFVGSVDFARSKFPSEGVLIGAGYLVQKKTFL
>NC_017934.1|WP_014731676.1|2465044_2467144_-|beta-galactosidase
MATVKIEDQKFKVDGKEISMYSGSVHYWRSKPEAWSGILDKVKDMGFNAITTYIPWEIHELQRGVFDFGEVEPSRDIDRFLTLCEEKGLYFAVRPGPQINSELTWFGFPERILEDPKLQARNAKGGKVVLTQVPRPIPALAYHSEEFLAEVDLWYDAIFSILEKHQPPKGNLVAVQVDNEMGFFFNVNPYSTDYSDSSKALYRSFLKEKYNTVSELNKMYSSNYSGFDEIDPPGRFEGTRKEELRYYLDWIEYREFYLITSMENLGNRMKSRGIHVPLFHNYPHPLGPGGAKGAPTTPFNLPALEEKLGFVGFDIYSRKELYDHVKTIASYVSGCSRFPYIPEFIMGVWPWYIKPGDVTDEVFVTKEALMHGIKEFNRYMLVDRNKWLGSPINRKGVVKEDSYAAHKKVGTNLMKIRWNDFAKCDDVLLVVNRDYDRLEAATTLLPVVGDFLEPVFGFSEYPSSVIVSDENLGFRRPIQQHKSTWFDAFYRALTEGGVVFSLGDTAQSVEALKKHKVLVISAFDYIGKKTADKLAEYIETGGTVVLGPEVPKLDDTFSSESALSKLVSSTTGKPVLNSNGMEIGKKFACGKGSLIQIFELESVSSGLIEILDSVKVFRIDKGKSVADLVLYKGKTSDEYILFVANPSDKKIEIDIPLPSVSESITDIWEEKKEQISAGRLVTEVCAHDIRIFSWKAINA
>NC_017934.1|WP_014731686.1|2492116_2492386_-|CRISPR-associated-endonuclease-Cas2
MFILLVYDIGEKRVNKALKICRQYLDWVQNSVFEGELTKAGLETLKKRLGKIMNKEEDSVRIYKLRSEDYLTMEILGIDKKQVADDGIL
>NC_017934.1|WP_014731687.1|2492389_2493379_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRMLYLFTSGKLLRMNNTLVFEKEDGKKVHLPVEQTDSICAFGEIDLNKRVLEFLTQKQIPLHFFNRYDYYSGTYYPREHLNSGFLILQQANFYNDGKKRTDLAKRFVRGSMQNMLSVLSYYNRRGKDLEREIEGLNALKERLEDTGTIDEAMAIEGNFRDLYYKCFDTIIDDSSFEFVSRTRQPPLNRLNALISFGNTMLYTTVLGEIYRTHLDPRIGYLHTTNFRSFSLNLDVAEVFKPILVDRLIFAMINKKQIQAKHFAKHLEGIYMNDSGKEIFVRAYDEKLKTTIKHPGLKRSVSYRYLIRLELYKIEKQITGERGYIPWKE
>NC_017934.1|WP_014731688.1|2493383_2493881_-|CRISPR-associated-protein-Cas4
MIDINGSLVLSYTNCRREAWLMAHRIIPEQDNTSMSLGRLIHEASYENRGEKDVSIDNIKLDMVEEKKGKTIVSEIKKSKYSLEGARDQLLFYLLRLKEMGVQAEGQLLVPKEKKKITITLTEEEEERIKKLCEEIQKLVEGPIPEIERAQNKCKNCAYYTYCWV
>NC_017934.1|WP_014731689.1|2493877_2496223_-|CRISPR-associated-helicase/endonuclease-Cas3
MSHVRSHPDRLLEKHTVGVWSLMTEEIENIGKFIDCENLFGISQSELSVLVKGIAIFHDLGKASEYFQSHLSGARVDSELSQHAAVGSLSVGHYLDGKIPDKSGAAILIAMAVIKYHHGSARDPKLILDSFDENQKFLEKIVRKLDENYLSWMEDLLDETVDLDLPSLIPRILSWERNYRKHREESGIKYYVLFQYLFSLLTWADRVDAAFRGDYKSERQTFSPDIVDIFRTTAGFDEPKTDMNLLRNNFYREAISNLDFTVGSMKGRTGIGKTLATLSLASKKREIIAEEQNYLPRIVYCLPFLSIIDQTFATIRDVLETSKIKVTSDILIQQHHLTELSYIKRKDGDENENYDAYLADILLNSWDSEIVITTFVSLFHSILTDRRNTRFFRLPGSVIILDEVQAIPPKYWKVISEVLEHLSKWGGTKIIFSSATIPQPFFVSSFPLIKGEYNLDRYDVRYLGKMGIEEFKYGLLEESVNTAMEEDKSLMIVLNTINCCKELFEHLQDSGSFTDENLHCLSSSLPPAVRREIIKNIKKKKGFQVLLTTQLIEAGVDISFDYCIRDLGPLDSVLQVAGRVNRSCEGNRGEMTVVDLLKEDSGRPFSWIYNDTIIWTTREILSSLKGSISEPALYELGDQYFSRLMNKGLENESLELLEALVKLDFERIAEFSLIEQLKGAVSFPVFLEIDDEAKRFWENYCEVLSTKPPIEAKFEYIAKRKQAVRNLAPYVVNVRLFLYPGAKKYTLPDIQHGFCYVSSDELEYYYDTKTGLKSDEESLFL
>NC_017934.1|WP_014731690.1|2496219_2496945_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLAFDISSDYAHFRQPYSTTSSLTYAIPPRTAALGIIGAIVGIESGGFGRSEHVAILEKANTKVGIRLMNKIEKTRFNMNYSYTKADVTTKNVLHIQVPVEMVRNPVYRLFVTADSELFEKLEGMVINSECYYTPYLGISEFVAKVKYVKTYEALIVETADEIWTAIEMLKKTSLSFSSGQKIFTETHAASMNSQRHVTRYVEVAYEAEGSSLKLQSVDPDSLLAKISTDAGDEVVMLW
>NC_017934.1|WP_014731691.1|2496956_2497907_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MSIKNRHEIVFIYDVKDGNPNGDPMDSNKPRMDVATGVNIVSDVRLKRTIRDHLAEMGEELFVSGDPITSEKRASLLITDLTDETYNKKAVEEALKLHKREGASKLLLEKCIDLRLFGGTVPLTGLNMSITGPVQFRFGRSLHVVDPVFTQGTAAFVSQEGKEQRSFREEWTLNYSCIAFYGVVNQNTAKHTLMSDEDLSKMLNAIWDGTKDLITRSKMEQLPRLLIDVVYLEEANFHIGELDKGIKLQSNMMEEKIRGISDFRLEISDLKKLLTQYKNKIQEIRYRIDPRLNIVENGTLFDLDTLLEGKMKRLPE
>NC_017934.1|WP_014731692.1|2497927_2499682_-|TIGR02556-family-CRISPR-associated-protein
MLKSTYEIGRIVSRGKDETQMYTTDIGETYIHELTIVLENNGETIRYSGCDKREKTRRNYLFREKKGNIKVPMSLTLRDAGKGSKAIIEKFINFGTQNKTPFAEKVAAALVESEEIISATLDEMAENLPKKEGRFYTVVIKQGDRELYPGDLDEFRQIFLRNVVSAASNTFGTCFVCQEEKPIGMKASDIFKFSSFDKPGFAHEMNDKNYYVNMPLCQDCFSKIALGKKVLDEELSMNFYASRVYIIPRFHSSESALIEGAVDQIRDIKRISNLKDTVHKANRFKGFETHMLCEISEGLYSSLNFIFYTVNNQEMKINLSVLDVPPSRLRNMSQKISDIEEELRTVFGNEEYLPSVLFGSMYDVFKDNRLRTFFDYIEALFKDQPVSLTPLKRGTLEFIGSRKLRGEPYATRAKQLITVAFFIDRLQKNAEGGVPLMGKDREDRIEEFFNKYPAFFRTDEEKFLFIVGQVHSRISRFQREKNIASTVDLRLKAYNMRPLDFMNHFKDLKWKTTQYSKEMDPVRVRGPIMNLLQIADKYLIPSGYEWKASIEDLNYAFLAGELATGVFRRESDPFEAEIVQEAEQ
>NC_017934.1|WP_014731693.1|2499686_2500421_-|CRISPR-associated-endoribonuclease-Cas6
MRIKVSLKSEKPISLPISYSHPLQSAIYKILSDVIPESHDFGLTVNKRTLRPFTFSRLFGHKQSINEGSISLTSPICLHFSSPLEDYVQAFANGLMKNGGIKLLGATLDLRSIEVEPTLPETKYIAAKTISPITVYSTLMTADGRKKTYFYNPAEKDFTIQIQENLNRKASALGNSVRARESFSFKLASRPVQRIVKYKDFTQIAWDFRFELNADPELISIAYSWGLGSKNAQGFGMIEISERR
>NC_017934.1|WP_014731694.1|2500811_2500952_-|hypothetical-protein
MRRTNFFLLLVLSTLVLGLEPITLRIGDTSATYYREGSLSIFSVAV
>NC_017934.1|WP_014731695.1|2501171_2501414_-|hypothetical-protein
MSWIKELLSLITVFASYVESPGNGPEKKEKVKQMIKDALPDEQWKIDPEFFDFILDVLIDLVVMFLNKGLWKTAMKVLVK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017934_9	9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2473735-2473769	35	MG969411	UNVERIFIED: Salmonella phage GE_vB_MG, complete genome	60613-60647	5	0.857
NC_017934_9	9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2473735-2473769	35	KR296694	Salmonella phage 40, complete genome	19788-19822	5	0.857
NC_017934_9	9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2473735-2473769	35	GU070616	Salmonella phage PVP-SE1, complete genome	25888-25922	5	0.857
NC_017934_9	9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2473735-2473769	35	JX181824	Salmonella phage SSE-121, complete genome	41413-41447	5	0.857
NC_017934_9	9.79|2476433|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2476433-2476468	36	NC_003064	Agrobacterium fabrum str. C58 plasmid At, complete sequence	341305-341340	6	0.833
NC_017934_9	9.52|2474660|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2474660-2474696	37	NZ_AP022320	Burkholderia sp. THE68 plasmid BTHE68_p2, complete sequence	16878-16914	7	0.811
NC_017934_9	9.30|2473210|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2473210-2473244	35	AP014249	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C17, *** SEQUENCING IN PROGRESS ***	9693-9727	8	0.771
NC_017934_10	10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2485326-2485358	33	NC_010898	Escherichia coli plasmid pIGRW12, complete sequence	2451-2483	8	0.758
NC_017934_10	10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2485326-2485358	33	NZ_CP052875	Enterobacter cloacae strain 3849 plasmid p3849II, complete sequence	4431-4463	8	0.758
NC_017934_10	10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2485326-2485358	33	NC_011404	Enterobacter cloacae plasmid pEC01, complete sequence	2577-2609	8	0.758
NC_017934_7	7.39|1742292|34|NC_017934|CRISPRCasFinder,PILER-CR	1742292-1742325	34	NZ_CP017663	Cronobacter sp. JZ38 plasmid unnamed1, complete sequence	50254-50287	9	0.735
NC_017934_9	9.14|2472159|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2472159-2472194	36	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	387854-387889	9	0.75
NC_017934_9	9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR	2473735-2473769	35	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	318271-318305	10	0.714
NC_017934_10	10.5|2485132|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2485132-2485166	35	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	90985-91019	10	0.714
NC_017934_10	10.5|2485132|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2485132-2485166	35	NZ_CP047445	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8	10497-10531	10	0.714
NC_017934_7	7.29|1741625|37|NC_017934|CRISPRCasFinder,PILER-CR	1741625-1741661	37	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	75853-75889	11	0.703
NC_017934_10	10.2|2484934|34|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2484934-2484967	34	MN693190	Marine virus AFVG_25M52, complete genome	17771-17804	11	0.676
NC_017934_10	10.2|2484934|34|NC_017934|PILER-CR,CRISPRCasFinder,CRT	2484934-2484967	34	MN693247	Marine virus AFVG_25M51, complete genome	17848-17881	11	0.676

1. spacer 9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to MG969411 (UNVERIFIED: Salmonella phage GE_vB_MG, complete genome) position: , mismatch: 5, identity: 0.857

aaggctctcttcggagagcctttctttatttggag---	CRISPR spacer
aaggctgtcttcggacagcctttcttta---ggaggtt	Protospacer
****** ******** ************   ****   

2. spacer 9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to KR296694 (Salmonella phage 40, complete genome) position: , mismatch: 5, identity: 0.857

aaggctctcttcggagagcctttctttatttggag--	CRISPR spacer
aaggctgtcttcggacagcctttctt--ttaggaggt	Protospacer
****** ******** **********  ** ****  

3. spacer 9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to GU070616 (Salmonella phage PVP-SE1, complete genome) position: , mismatch: 5, identity: 0.857

aaggctctcttcggagagcctttctttatttggag--	CRISPR spacer
aaggctgtcttcggacagcctttctt--ttaggaggt	Protospacer
****** ******** **********  ** ****  

4. spacer 9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to JX181824 (Salmonella phage SSE-121, complete genome) position: , mismatch: 5, identity: 0.857

aaggctctcttcggagagcctttctttatttggag--	CRISPR spacer
aaggctgtcttcggacagcctttctt--ttaggaggt	Protospacer
****** ******** **********  ** ****  

5. spacer 9.79|2476433|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 6, identity: 0.833

cggtctcaagctcgtcttcgccaatctcg-aagtcga	CRISPR spacer
ctttctcaaggtcatcttcgccaatctcgtaaatcg-	Protospacer
*  ******* **.*************** **.*** 

6. spacer 9.52|2474660|37|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022320 (Burkholderia sp. THE68 plasmid BTHE68_p2, complete sequence) position: , mismatch: 7, identity: 0.811

cgaatgtgg-gtcgatggcatatttgccgatcttgaag	CRISPR spacer
-caacgtgacgtcgacggcatatttgacgatcttgaac	Protospacer
  **.***. *****.********** ********** 

7. spacer 9.30|2473210|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to AP014249 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C17, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.771

-tgcggtttgcatataatgctgatactcgtgtcgga	CRISPR spacer
gtgctg-ctgcatataatgctggtactggtgtcatg	Protospacer
 *** * .**************.**** *****. .

8. spacer 10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to NC_010898 (Escherichia coli plasmid pIGRW12, complete sequence) position: , mismatch: 8, identity: 0.758

tgaaacagaagaacatcaagggcgtgaagtatg	CRISPR spacer
ggatccagaagaaaatcaagggcatgaaggtta	Protospacer
 **  ******** *********.*****  *.

9. spacer 10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052875 (Enterobacter cloacae strain 3849 plasmid p3849II, complete sequence) position: , mismatch: 8, identity: 0.758

tgaaacagaagaacatcaagggcgtgaagtatg	CRISPR spacer
ggatccagaagaaaatcaagggcatgaaggtta	Protospacer
 **  ******** *********.*****  *.

10. spacer 10.8|2485326|33|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to NC_011404 (Enterobacter cloacae plasmid pEC01, complete sequence) position: , mismatch: 8, identity: 0.758

tgaaacagaagaacatcaagggcgtgaagtatg	CRISPR spacer
ggatccagaagaaaatcaagggcatgaaggtta	Protospacer
 **  ******** *********.*****  *.

11. spacer 7.39|1742292|34|NC_017934|CRISPRCasFinder,PILER-CR matches to NZ_CP017663 (Cronobacter sp. JZ38 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

taaggtcattcaaggagactttgtctgttacaat	CRISPR spacer
taggtcgattcaatgagactttgtctgtgacttc	Protospacer
**.* . ****** ************** **  .

12. spacer 9.14|2472159|36|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

tctagccgcccataagggcggttagctttggaggca	CRISPR spacer
gctagccgcccctaagggcgggtagcttctgcctga	Protospacer
 ********** ********* ******. *    *

13. spacer 9.38|2473735|35|NC_017934|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

aaggctctcttcggagagcctttcttt---atttggag	CRISPR spacer
ccggctctcttcggggagcccttctttcgcactcc---	Protospacer
  ************.*****.******   *.*.    

14. spacer 10.5|2485132|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 10, identity: 0.714

tatggcgcag------aaatctttctcatgtacttcgttga	CRISPR spacer
------gtaaactattaattctttctcatgtacttggttga	Protospacer
      *.*.      ** **************** *****

15. spacer 10.5|2485132|35|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047445 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8) position: , mismatch: 10, identity: 0.714

tatggcgcag------aaatctttctcatgtacttcgttga	CRISPR spacer
------gtaaactattaattctttctcatgtacttggttga	Protospacer
      *.*.      ** **************** *****

16. spacer 7.29|1741625|37|NC_017934|CRISPRCasFinder,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 11, identity: 0.703

tcctggtgcagttggttctcttgctgatactagcata	CRISPR spacer
ccaagactcagttaattctcttgctgatactagctcc	Protospacer
.*  *.. *****..******************* . 

17. spacer 10.2|2484934|34|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to MN693190 (Marine virus AFVG_25M52, complete genome) position: , mismatch: 11, identity: 0.676

ttagctgggcaacacttagaactatagatgattt	CRISPR spacer
agattcatgcaacacttagaagaatagatgatga	Protospacer
  * ... *************  *********  

18. spacer 10.2|2484934|34|NC_017934|PILER-CR,CRISPRCasFinder,CRT matches to MN693247 (Marine virus AFVG_25M51, complete genome) position: , mismatch: 11, identity: 0.676

ttagctgggcaacacttagaactatagatgattt	CRISPR spacer
agattcatgcaacacttagaagaatagatgatga	Protospacer
  * ... *************  *********