CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	3 crisprs	RT,csa3	3	1
NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	1 crisprs	csa3,DEDDh,RT	1	4
NC_017322	Sinorhizobium meliloti BL225C, complete sequence	3 crisprs	csa3,WYL,RT,cas3,DEDDh	0	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017323_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017323_1

233276-233393

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017323_1

>merge|NC_017323|1|233276-233393|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGACACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGACGCCGCCGCC

>NC_017323|1|1|233276-233393|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGA	CACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGC
TGCTTCCGGCGCCGCCGACGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017323.1\|WP_014527142.1\|246101_247265_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_017323.1\|WP_010975842.1\|219913_220537_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_017323.1\|WP_014527132.1\|221507_223733_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_017323.1\|WP_010975822.1\|250354_251629_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_017323.1\|WP_014527138.1\|237996_239148_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_017323.1\|WP_014527145.1\|251656_252853_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_017323.1\|WP_010975843.1\|218823_219714_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_017323.1\|WP_014527144.1\|248900_250358_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_017323.1\|WP_014527135.1\|227504_228092_-\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_014527140.1\|240530_243869_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_017323.1\|WP_010975829.1\|240006_240405_-\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_013850619.1\|229776_230688_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_017323.1\|WP_014527141.1\|244053_246096_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_017323.1\|WP_014527134.1\|226833_227343_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_017323.1\|WP_014527143.1\|247354_248377_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_017323.1\|WP_014527136.1\|228455_229670_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_017323.1\|WP_014527133.1\|226091_226679_+\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_014527139.1\|239135_239918_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_017323.1\|WP_010975839.1\|223813_225595_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625
NC_017323.1\|WP_010975841.1\|220533_221511_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238

Protein	Function_ID	Function_description	E-value
NC_017323.1\|WP_014527142.1\|246101_247265_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_010975842.1\|219913_220537_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_017323.1\|WP_014527132.1\|221507_223733_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_017323.1\|WP_014527138.1\|237996_239148_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NC_017323.1\|WP_014527145.1\|251656_252853_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_017323.1\|WP_010975843.1\|218823_219714_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_017323.1\|WP_014527144.1\|248900_250358_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_017323.1\|WP_014527134.1\|226833_227343_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.19311e-15
NC_017323.1\|WP_014527143.1\|247354_248377_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_013850619.1\|229776_230688_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_017323.1\|WP_014527141.1\|244053_246096_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_014527140.1\|240530_243869_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.91903e-24
NC_017323.1\|WP_014527136.1\|228455_229670_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.75428e-64
NC_017323.1\|WP_010975822.1\|250354_251629_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_017323.1\|WP_014527139.1\|239135_239918_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NC_017323.1\|WP_010975839.1\|223813_225595_-\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NC_017323.1\|WP_010975841.1\|220533_221511_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90

>NC_017323.1|WP_013850619.1|229776_230688_-|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_017323.1|WP_014527136.1|228455_229670_-|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_017323.1|WP_014527135.1|227504_228092_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEACQDRALEVTSEFKLSGR
>NC_017323.1|WP_014527134.1|226833_227343_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYKGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NC_017323.1|WP_014527133.1|226091_226679_+|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIEHADGRRLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLDRVNHAEASARARAKNGAAI
>NC_017323.1|WP_010975839.1|223813_225595_-|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_017323.1|WP_014527132.1|221507_223733_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_017323.1|WP_010975841.1|220533_221511_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_017323.1|WP_010975842.1|219913_220537_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_017323.1|WP_010975843.1|218823_219714_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_017323.1|WP_014527138.1|237996_239148_+|histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NC_017323.1|WP_014527139.1|239135_239918_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_017323.1|WP_010975829.1|240006_240405_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_017323.1|WP_014527140.1|240530_243869_-|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGADIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_017323.1|WP_014527141.1|244053_246096_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_017323.1|WP_014527142.1|246101_247265_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_017323.1|WP_014527143.1|247354_248377_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_017323.1|WP_014527144.1|248900_250358_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_017323.1|WP_010975822.1|250354_251629_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NC_017323.1|WP_014527145.1|251656_252853_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA

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Crispr_ID: NC_017323_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017323_2

233483-233582

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017323_2

>merge|NC_017323|2|233483-233582|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGAAGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGTCGCCGCCCTGCCCGCCACCGCCGCCGAT

>NC_017323|2|2|233483-233582|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGA	AGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGT
CGCCGCCCTGCCCGCCACCGCCGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017323.1\|WP_014527142.1\|246101_247265_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_017323.1\|WP_010975842.1\|219913_220537_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_017323.1\|WP_014527132.1\|221507_223733_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_017323.1\|WP_010975822.1\|250354_251629_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_017323.1\|WP_014527138.1\|237996_239148_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_017323.1\|WP_014527145.1\|251656_252853_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_017323.1\|WP_010975843.1\|218823_219714_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_017323.1\|WP_014527144.1\|248900_250358_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_017323.1\|WP_014527135.1\|227504_228092_-\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_014527140.1\|240530_243869_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_017323.1\|WP_010975829.1\|240006_240405_-\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_013850619.1\|229776_230688_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_017323.1\|WP_014527141.1\|244053_246096_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_017323.1\|WP_014527134.1\|226833_227343_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_017323.1\|WP_014527143.1\|247354_248377_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_017323.1\|WP_014527136.1\|228455_229670_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_017323.1\|WP_014527133.1\|226091_226679_+\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_014527139.1\|239135_239918_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_017323.1\|WP_010975839.1\|223813_225595_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625
NC_017323.1\|WP_010975841.1\|220533_221511_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238

Protein	Function_ID	Function_description	E-value
NC_017323.1\|WP_014527142.1\|246101_247265_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_010975842.1\|219913_220537_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_017323.1\|WP_014527132.1\|221507_223733_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_017323.1\|WP_014527138.1\|237996_239148_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NC_017323.1\|WP_014527145.1\|251656_252853_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_017323.1\|WP_010975843.1\|218823_219714_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_017323.1\|WP_014527144.1\|248900_250358_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_017323.1\|WP_014527134.1\|226833_227343_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.19311e-15
NC_017323.1\|WP_014527143.1\|247354_248377_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_013850619.1\|229776_230688_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_017323.1\|WP_014527141.1\|244053_246096_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_014527140.1\|240530_243869_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.91903e-24
NC_017323.1\|WP_014527136.1\|228455_229670_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.75428e-64
NC_017323.1\|WP_010975822.1\|250354_251629_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_017323.1\|WP_014527139.1\|239135_239918_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NC_017323.1\|WP_010975839.1\|223813_225595_-\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NC_017323.1\|WP_010975841.1\|220533_221511_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90

>NC_017323.1|WP_013850619.1|229776_230688_-|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_017323.1|WP_014527136.1|228455_229670_-|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_017323.1|WP_014527135.1|227504_228092_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEACQDRALEVTSEFKLSGR
>NC_017323.1|WP_014527134.1|226833_227343_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYKGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NC_017323.1|WP_014527133.1|226091_226679_+|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIEHADGRRLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLDRVNHAEASARARAKNGAAI
>NC_017323.1|WP_010975839.1|223813_225595_-|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_017323.1|WP_014527132.1|221507_223733_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_017323.1|WP_010975841.1|220533_221511_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_017323.1|WP_010975842.1|219913_220537_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_017323.1|WP_010975843.1|218823_219714_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_017323.1|WP_014527138.1|237996_239148_+|histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NC_017323.1|WP_014527139.1|239135_239918_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_017323.1|WP_010975829.1|240006_240405_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_017323.1|WP_014527140.1|240530_243869_-|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGADIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_017323.1|WP_014527141.1|244053_246096_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_017323.1|WP_014527142.1|246101_247265_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_017323.1|WP_014527143.1|247354_248377_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_017323.1|WP_014527144.1|248900_250358_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_017323.1|WP_010975822.1|250354_251629_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NC_017323.1|WP_014527145.1|251656_252853_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA

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Crispr_ID: NC_017323_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017323_3

233657-233776

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017323_3

>merge|NC_017323|3|233657-233776|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCGCACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGGTGCCGCCCGCACCGCCGCCGCCGCCGA

>NC_017323|3|3|233657-233776|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCG	CACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGG
TGCCGCCCGCACCGCCGCCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017323.1\|WP_014527142.1\|246101_247265_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_017323.1\|WP_010975842.1\|219913_220537_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_017323.1\|WP_014527132.1\|221507_223733_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_017323.1\|WP_010975822.1\|250354_251629_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_017323.1\|WP_014527138.1\|237996_239148_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_017323.1\|WP_014527145.1\|251656_252853_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_017323.1\|WP_010975843.1\|218823_219714_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_017323.1\|WP_014527144.1\|248900_250358_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_017323.1\|WP_014527135.1\|227504_228092_-\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_014527140.1\|240530_243869_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_017323.1\|WP_010975829.1\|240006_240405_-\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_013850619.1\|229776_230688_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_017323.1\|WP_014527141.1\|244053_246096_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_017323.1\|WP_014527134.1\|226833_227343_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_017323.1\|WP_014527143.1\|247354_248377_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_017323.1\|WP_014527136.1\|228455_229670_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_017323.1\|WP_014527133.1\|226091_226679_+\|hypothetical-protein	unknown	unknown	unknown
NC_017323.1\|WP_014527139.1\|239135_239918_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_017323.1\|WP_010975839.1\|223813_225595_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625
NC_017323.1\|WP_010975841.1\|220533_221511_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238

Protein	Function_ID	Function_description	E-value
NC_017323.1\|WP_014527142.1\|246101_247265_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_010975842.1\|219913_220537_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_017323.1\|WP_014527132.1\|221507_223733_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_017323.1\|WP_014527138.1\|237996_239148_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171
NC_017323.1\|WP_014527145.1\|251656_252853_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_017323.1\|WP_010975843.1\|218823_219714_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_017323.1\|WP_014527144.1\|248900_250358_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_017323.1\|WP_014527134.1\|226833_227343_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.19311e-15
NC_017323.1\|WP_014527143.1\|247354_248377_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_013850619.1\|229776_230688_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_017323.1\|WP_014527141.1\|244053_246096_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017323.1\|WP_014527140.1\|240530_243869_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.91903e-24
NC_017323.1\|WP_014527136.1\|228455_229670_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.75428e-64
NC_017323.1\|WP_010975822.1\|250354_251629_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_017323.1\|WP_014527139.1\|239135_239918_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NC_017323.1\|WP_010975839.1\|223813_225595_-\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NC_017323.1\|WP_010975841.1\|220533_221511_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90

>NC_017323.1|WP_013850619.1|229776_230688_-|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_017323.1|WP_014527136.1|228455_229670_-|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_017323.1|WP_014527135.1|227504_228092_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEACQDRALEVTSEFKLSGR
>NC_017323.1|WP_014527134.1|226833_227343_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYKGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NC_017323.1|WP_014527133.1|226091_226679_+|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIEHADGRRLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLDRVNHAEASARARAKNGAAI
>NC_017323.1|WP_010975839.1|223813_225595_-|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_017323.1|WP_014527132.1|221507_223733_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_017323.1|WP_010975841.1|220533_221511_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_017323.1|WP_010975842.1|219913_220537_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_017323.1|WP_010975843.1|218823_219714_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_017323.1|WP_014527138.1|237996_239148_+|histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NC_017323.1|WP_014527139.1|239135_239918_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_017323.1|WP_010975829.1|240006_240405_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_017323.1|WP_014527140.1|240530_243869_-|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGADIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_017323.1|WP_014527141.1|244053_246096_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_017323.1|WP_014527142.1|246101_247265_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_017323.1|WP_014527143.1|247354_248377_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_017323.1|WP_014527144.1|248900_250358_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_017323.1|WP_010975822.1|250354_251629_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NC_017323.1|WP_014527145.1|251656_252853_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054144	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656057	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772938	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292395	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225897	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998580	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651469-651513	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636463-636507	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233510-233554	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644528-644572	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558514-558558	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658142-658186	0	1.0
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085318	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151540	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373310	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085323	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634337-634381	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302265-1302309	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895761-895805	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423128-1423172	1	0.978
NC_017323_2	2.1\|233510\|45\|NC_017323\|CRISPRCasFinder	233510-233554	45	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795069-795113	1	0.978
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651262-651324	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085463-1085525	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636256-636318	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151685-1151747	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233303-233365	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644321-644383	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634130-634192	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302058-1302120	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895554-895616	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773083-773145	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558307-558369	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292540-292602	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422921-1422983	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373455-373517	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794862-794924	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657935-657997	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226042-1226104	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998725-998787	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085468-1085530	3	0.952
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054289-1054351	4	0.937
NC_017323_1	1.1\|233303\|63\|NC_017323\|CRISPRCasFinder	233303-233365	63	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656199-656261	4	0.937
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651643-651708	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085144	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053970	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636637-636702	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151366	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233684-233749	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644702-644767	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634511-634576	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655883	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302439-1302504	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895935-896000	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772764	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558688-558753	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292221	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423302-1423367	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373136	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795243-795308	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658316-658381	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225723	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998406	6	0.909
NC_017323_3	3.1\|233684\|66\|NC_017323\|CRISPRCasFinder	233684-233749	66	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085149	6	0.909

1. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

2. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

3. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

4. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

5. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

6. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

7. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

8. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

9. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

10. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

11. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

12. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

13. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

14. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

15. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

16. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

17. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

18. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

19. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

20. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

21. spacer 2.1|233510|45|NC_017323|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

22. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

23. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

24. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

25. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

26. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

27. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

28. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

29. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

30. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

31. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

32. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

33. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

34. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

35. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

36. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

37. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

38. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

39. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

40. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

41. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

42. spacer 1.1|233303|63|NC_017323|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

43. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

44. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

45. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

46. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

47. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

48. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

49. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

50. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

51. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

52. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

53. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

54. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

55. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

56. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

57. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

58. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

59. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

60. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

61. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

62. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

63. spacer 3.1|233684|66|NC_017323|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1653864 : 1662060

Sinorhizobium_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014527882.1\|1653864_1654443_+	GIY-YIG nuclease family protein	A0A0F6SJ48	Sinorhizobium_phage	2.8e-13	26.5
WP_014527883.1\|1654456_1654636_+	hypothetical protein	NA	NA	NA	NA
WP_014527884.1\|1654661_1655126_+	lysozyme	A0A1L2BWX1	Bacteriophage	1.5e-25	47.9
WP_014527885.1\|1655122_1655539_+	hypothetical protein	A0A0F6YQP1	Sinorhizobium_phage	1.0e-41	60.7
WP_014527886.1\|1655842_1656292_-	hypothetical protein	NA	NA	NA	NA
WP_014527887.1\|1656444_1656942_-	hypothetical protein	A0A1Y0SVH3	Sinorhizobium_phage	1.8e-32	42.9
WP_014527888.1\|1656941_1658933_-	hypothetical protein	A0A0F6TGS7	Sinorhizobium_phage	1.4e-96	48.0
WP_014527889.1\|1658954_1661168_-	hypothetical protein	NA	NA	NA	NA
WP_014527890.1\|1661187_1662060_-	hypothetical protein	M4SPQ3	Rhodobacter_phage	3.1e-16	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017324

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017324_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017324_1

709915-710024

Orphan

Consensus_repeat	Method
TCATCCCGGCGGTCCCGCCGCGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017324_1

>merge|NC_017324|1|709915-710024|CRISPRCasFinder
TCATCCCGGCGGTCCCGCCGCGCGGCGATCAGGTCCATGAGCCGCTCGCGCCGGTCGCCGCGGTCGCCGATCAGTTCCATCAGGTCATCGCGGCGGTCCCGCCGCGCGGC

>NC_017324|1|1|709915-710024|CRISPRCasFinder
TCATCCCGGCGGTCCCGCCGCGCGGC	GATCAGGTCCATGAGCCGCTCGCGCCGGTCGCCGCGGTCGCCGATCAGTTCCATCAGG
TCATCGCGGCGGTCCCGCCGCGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017324.1\|WP_014528412.1\|710900_712661_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227903
NC_017324.1\|WP_017267560.1\|715696_717781_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|306677
NC_017324.1\|WP_014528404.1\|702818_703643_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017324.1\|WP_014528408.1\|706561_707278_-\|hypothetical-protein	unknown	unknown	unknown
NC_017324.1\|WP_014528402.1\|699624_700260_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NC_017324.1\|WP_014528407.1\|705321_706512_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NC_017324.1\|WP_170849873.1\|728616_728712_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378642
NC_017324.1\|WP_014528401.1\|699240_699621_-\|response-regulator	unknown	unknown	gnl\|CDD\|381092
NC_017324.1\|WP_017268105.1\|703754_704672_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
NC_017324.1\|WP_014528417.1\|726041_726494_+\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544
NC_017324.1\|WP_017267559.1\|715078_715435_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NC_017324.1\|WP_041867811.1\|728208_728595_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223052
NC_017324.1\|WP_074853769.1\|708994_709144_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288799
NC_017324.1\|WP_017268104.1\|700264_702313_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_017324.1\|WP_026029634.1\|721251_721437_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NC_017324.1\|WP_014528410.1\|709184_709532_-\|hypothetical-protein	unknown	unknown	unknown
NC_017324.1\|WP_014528301.1\|722194_723394_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017324.1\|WP_014528409.1\|707526_708516_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176233
NC_017324.1\|WP_013844811.1\|724081_725416_-\|ISNCY-like-element-ISRm17-family-transposase	unknown	unknown	gnl\|CDD\|225581
NC_017324.1\|WP_014528416.1\|720485_720833_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017324.1\|WP_014528412.1\|710900_712661_-\|hypothetical-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	4.45532e-31
NC_017324.1\|WP_014528417.1\|726041_726494_+\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	1.39673e-15
NC_017324.1\|WP_014528401.1\|699240_699621_-\|response-regulator	gnl\|CDD\|381092	cd17537, REC_FixJ, phosphoacceptor receiver (REC) domain of FixJ family response regulators. FixJ family response regulators contain an N-terminal receiver domain (REC) and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. The Sinorhizobium meliloti two-component system FixL/FixJ regulates nitrogen fixation in response to oxygen during symbiosis. Under microaerobic conditions, the kinase FixL phosphorylates the response regulator FixJ resulting in the regulation of nitrogen fixation genes such as nifA and fixK. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.62241e-27
NC_017324.1\|WP_014528404.1\|702818_703643_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.42603e-43
NC_017324.1\|WP_014528402.1\|699624_700260_-\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	1.33135e-85
NC_017324.1\|WP_014528407.1\|705321_706512_-\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	1.57309e-128
NC_017324.1\|WP_170849873.1\|728616_728712_-\|hypothetical-protein	gnl\|CDD\|378642	pfam11339, DUF3141, Protein of unknown function (DUF3141). This family of proteins with unknown function appears to be restricted to Proteobacteria.	5.68436e-07
NC_017324.1\|WP_017267560.1\|715696_717781_-\|HAMP-domain-containing-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	5.79868e-72
NC_017324.1\|WP_017268105.1\|703754_704672_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	9.27708e-50
NC_017324.1\|WP_041867811.1\|728208_728595_-\|hypothetical-protein	gnl\|CDD\|223052	PHA03346, PHA03346, US22 family homolog; Provisional.	0.00883676
NC_017324.1\|WP_074853769.1\|708994_709144_+\|hypothetical-protein	gnl\|CDD\|288799	pfam11972, HTH_13, HTH DNA binding domain. This is a helix-turn-helix DNA binding domain.	0.00072557
NC_017324.1\|WP_017268104.1\|700264_702313_-\|PAS-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.11549e-34
NC_017324.1\|WP_026029634.1\|721251_721437_-\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.08833e-05
NC_017324.1\|WP_017267559.1\|715078_715435_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	1.70794e-08
NC_017324.1\|WP_014528301.1\|722194_723394_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.52536e-141
NC_017324.1\|WP_014528409.1\|707526_708516_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.59654e-173
NC_017324.1\|WP_013844811.1\|724081_725416_-\|ISNCY-like-element-ISRm17-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.54829e-41

>NC_017324.1|WP_014528410.1|709184_709532_-|hypothetical-protein
MNKFLLMTAGLLLMPLPALSQSAPDSGSRDPGSMQDREIEDLLRSITDEVSGGSGGPRRGAAFLLRSGDATVAVRCDPRESMKDCVDLTTSLLEKARSAMPTGGGAPGTAPPPRP
>NC_017324.1|WP_074853769.1|708994_709144_+|hypothetical-protein
MVAKTLDVTPQAERGIVLELRLREIALVTVDDAASQVLRIVNTLQECFR
>NC_017324.1|WP_014528409.1|707526_708516_+|zinc-dependent-alcohol-dehydrogenase-family-protein
MPTMRAAVVEAANGPFRVSDLEHPVPKSGEVLVRIKASGVNPLDTKIRAGAAAHARHQLPAVLGLDLAGIVEDVGGGVTRFSPGDEVYGMTGGVGGHQGSLAQYAAVDERLLAIRPSNLSMREAAALPLIFITAWEGLVDRVNARAGQTVLVLGAGGGVGHIAVQIAIALGADVYGVDSTSKGDYLRSLGATAIDYSSEEVESYVARHSGSKGFDVVYDTVGGAGLDTAFKAVARFGHVVSCLGWGTHALAPLSFKSATYSGVFTLIPLLTGEGREHHGDIMREATKLVEAGKVSPRLDPRTFTLETAANAHELIEHRKANGKLVIDVD
>NC_017324.1|WP_014528408.1|706561_707278_-|hypothetical-protein
MNKLLDKVMVAHGSPSRWNDHQVVRAAALIAGDLCGNGVSGTTRQITVYPHLARALVEPSGSPSCRSDLVANRLSIIREDGTVISEIEDVRTMPMNYDPKARTDKVFGAFLACCTVRTLLTTPFLLAMKGVEVNELIPWNEDGDRWRVLRAEFPPGFDTAARVHDFFFGGDFLLRRHDYHVDGDTGITITELVSDYVDNHGIRMPRKLRGYRRCSDLNPDLARVLISIDISTLEFSAT
>NC_017324.1|WP_014528407.1|705321_706512_-|PLP-dependent-transferase
MKDLTRCVVTPKVDTEGFVALGAGVYRASTIVFENAEAYANRGKRGPDGYSYGLYGTPTTRTLEAKLTVLEQGVRTFLLPSGQAANAIAMLPFLRAGDGVLLADSVYPPVRDFANTDLARFGVEVGYYDPADPSDLEARLNDRTKIVWCESPGSTTMEVQDLPRIADIAHRYGALLGCDNTWATPLNYKPLSLGADIVTEGLTKYISGHSDVLLGSLTVRDEQLTAPIRSTLGRLGICVSPDDASLVLRGLETLGVRMRHASEGALQLISRIQAADIVDRVLHPALPTSPGHSIWKRDFLGSSGVFGIVFKEGLSRHVAPSLDVLKTFAIGASWGGTRSLIAPMPVKAYRSVTQWDGDDLILRLSVGLEDHQDLVEDVDALLKEISARRSAWTIPR
>NC_017324.1|WP_017268105.1|703754_704672_+|MBL-fold-metallo-hydrolase
MAASTFAVSGGWLSPRQVFAKAQGIVDMIRDEAAKAPIKVHQARGGVAILEGSGGNIAVLTGEDGKVLVDGGITASRHRILDALAGLGKQPVRHLINTHWHFDHTDGNEWLNGEGAAILAHENTKKHLMTVQKVDDWDFEFPRPPLAAVPSETVGDETSLKLNKSTLMLKHHPNAHTDGDISVTFSEANIVHTGDLYWNGIYPFIDYSTGGGIDGKIKAVEEILSRVTDETIVIPGHGQPLSKKADLSDYRTMLVDIRGNVARLKAEGKPIDEVIAAKPTEQFDAKWGQFVIGPEFFTRLVYHGV
>NC_017324.1|WP_014528404.1|702818_703643_+|alpha/beta-hydrolase
MGTITTKDGTQIFYKDWGKGQPVVFHHGWPLSADDWDNQMLFFLGKGYRVIAHDRRGHGRSTQTATGNDMDTYAADVAELADALDLRDAIHVGHSTGGGEVTRYVAQYGKGRVAKAVIISAIPPVMLKSDSNPGGLPIEVFDDLRAQLAANRAQFYLDVPTGPFYGFNRKDAKVSPGLIQNWWRQGMIGGAIAHYECIKVFSETDFTEDLKKIDVPVLVMHGDDDQIVPIADAALLSIKLLKHGTLKVYNGLPHGMCSTHPDIINPDLLAFFQA
>NC_017324.1|WP_017268104.1|700264_702313_-|PAS-domain-containing-protein
MLIKRRHLAVAAALLLIAVCALIVFVQASGSAGLTRPAAFLLSALAIVWLADLWRRRIDTDEHLNNAKLIVESMPGLGWATDAMGKFVYVNPSVVEYVGKRTDEFNETGRTGLEAVHPDDAERVTEAWLTSMRTGTSFQSIHRIRRADGEYRWFQAYGRPHFDAQGDILGWFGTTIDVDEKKRAEQRLAESERQLRTLIDTMPVMIWCGSPSGEPIYQNPKTLEYLGATFEEIKENNFGVVHPDDAEGFQSAWADCVERKTSLSLICRLRYKDGTHRWNRIDAAPLLGEDGEIIEWYGTNVDIEELHQTQEELRSNAERLRLMLDTLPAFVWCASPEGQPTYFNEPLMKYSGVTLEELRGVDGSGFAPMISSLVHPADAPFLRDRFEQSFKSGEPIALKYRHRLADGNYHLVDCRARVLRDRQSRLFQWYGVIVDVEDEAQAQAQLQKAQHQLELATRAASLSELSASIAHELNQPLVAVTTNSSATAQWLSATPPNIDRAKSSAKKAADAASDAAEVISRIKALFRQSGGAKYPGDINEVILEACTLLRERIAGSKCDLQTHLEPNLPNATFDKGLILQVVVNLIQNAMDAMATLNGAVRLLDIRSRFVNGKILVDVRDSGVGLQDAEKIFEPFYTTKHNGMGIGLSICRSIVGAHAGTLWASPSEPSGTVFTFALPLSGG
>NC_017324.1|WP_014528402.1|699624_700260_-|response-regulator-transcription-factor
MSHGDHAVFVIDDDKRVRDGLSELLESRGIGVTTFASAREYLKAPKPENPSCLVLDVRLPDIDGFELQARLANEPHPPIVFITGHGDIPMTVRAMKLGAVDFLAKPFRDHELLAAIQTALERDREARRDRSVLNELQGRLNRLSARERDVLPLVVSGLMNKQGAAELGISEITFQIHRGNLMRKMHADSLADLVRIATKLGIPITHSRHGN
>NC_017324.1|WP_014528401.1|699240_699621_-|response-regulator
MLAQDSHTFAIVDDDKRVLDGLRELLESVGYVVRTYRSPRSFLSTEDLSTCHCVITDIRMPSMDGFELEQAVRSREPAMPMILMTGRNDIDDLGFPGADDRRVFMRKPLNSQVLLQAITRLLAFRR
>NC_017324.1|WP_014528412.1|710900_712661_-|hypothetical-protein
MVHADQQGVRVDPATALPTEAEVLAQLDRIRFSTEFDAPERARQFLAYVVGETIAGRADRIKAYSIATEVFGRDSSFDAQTDPAVRIEAARIRRALERYYLVEGHNDPLVINMPKGAYVPTFERRIKVHTEPDPGLFVSVRRNSPFGSSRQPWAWVAIAALAFALGSLAANALLRSITPAESEDMAGFRPNIPKLAVMPFEDLTGTPHSAMITRGFTDEVVDKIARFKEIIVVSREKLDGSPDQADAPAYALEGRVRLDGEKLRLAIRLVQRSDGSVVWANNYDESLATHKIIALQEKAAAAVATAVAQPYGVVFQANAVRFTRSVPDDWEAYACTLAYYGYRSNLSPLTHSSVQECLQQATRQFPNYATAWALLSMTYIDELRFQYRLERSSPISLEHAVAAAARAVELDSQDVRALQAEMLTLFFRGEVDAALAVGARAFAINPNDTELAGEYGFRRALSGQWRSGCELVSQTVERNPGPVAYFEAALAICSYIESDYVAAERWARLADLRANPIYRVILLAILGKLGKEEQAKEEQNWLETNVPGFLENIRKEIALRIRRPEDQQHFIEGLREAGVTIPEDGA
>NC_017324.1|WP_017267559.1|715078_715435_+|BA14K-family-protein
MSPARAQTCIGICNGGTGGSTNHNLFIEREYRDFLQQRYPNYGSRYRGMRPDISIGPGATVGGFRPGVRQQFRLRQRRVIDANKHLRWCQERYLSYRLADDTFQPFEGARRPCNSPYN
>NC_017324.1|WP_017267560.1|715696_717781_-|HAMP-domain-containing-protein
MAVKLFTILVLLGAIAVLVTGVLGYFRARDALEKAVFDQLTAARQTKTRQVEDYFRTIDAELRLLASSKMAVDATREFRIVVDQLDRAGAPPELRQKVGTWYTENFIPGITRVLGRKPVLADYLPVGAAPYYLQYHYIVANPHPAERRKLLDDAGDGSEYSRLHAMYHPMMRAAAATLGFFDFMIADPKSGRLIYTVEKEVDFTTSLQAGPYRHSNAAAAAARCAASPDRSAVCLEDFAPYAPSGGAPIAFMGAPVIDRGVVIGVLIAQLSNEEIDNVVTGGRRWRQEGFGDTGEAYLVGPDYLVRSGPRAFYENRENYFAELKSVGAPGEEIAAIERYGTPVQHQRINTKATQAALAGVEGTGEIVGYRGVPTLASWGPLAIPGIKWGLVAKIDSAEAFAPIERLRQDLLVVGGLALLVVAATGAWLSRALLGPLRELTAGVRRFAAGDYRASVPVRTHDEIGQLCSAFNGMVEDLHQKNVVIENKNRENEQLLLNVLPAPIANRLRGGEEAIADGFAEVTVAFADLVGFTELTSEMPPHDVVTLLNELFTRFDAAAHDLGIEKIKTVGDAYMAVCGLPEPVANHAERMVRMAIRMVHITREHGMEHNASMKLRVGINTGPVVAGVIGTSKYIYDLWGDTVNLASRMESGGIPDSIQVTRSVYEKLKGQFAFEPRGAIEVKGKGKVEAWVLRL
>NC_017324.1|WP_014528416.1|720485_720833_-|hypothetical-protein
MKRPAFSTAVSLSLLALVSSRVNLSHAAEPTFAILQGMCRNTKDPLQQGYCTGFIEAIAIRIARDGKNCAFLQDYIDHANADLALSDLIADLNPAEYSEKAFDAVEKFFYNKGCS
>NC_017324.1|WP_026029634.1|721251_721437_-|ISL3-family-transposase
MVDLEHHSVVDVLEDRSVESAKAWLQARPTIAVVSRGRCGLYAQAAREGAPQAPRWLIVFI
>NC_017324.1|WP_014528301.1|722194_723394_-|IS256-family-transposase
MTNDMMNVRSLVEKSADADLLREMIGFAAERLMELEVGGATGAGFGEKSPMRLAQRNGYRDRDWETRAGTVELRIPKLRKGSYFPSFLEPRRMAEKALTAVIQEAYIQGISTRSVDDLVKAMGMSGISKSQVSRLCEEIDVKVKAFLDRPIEGDWPYIWIDATYLKVRRGGRIVSVAVIIAVGVNSDGRREVLGMEVGTSEAEPIWTEFLRRLTRRGLRGVKLVVSDAHEGLKAAVTKVLSATWQRCRVHFMRNVLAHAGKSGRRVVSAFIATAFAQETPEAASAQWRSVADQIRPKVPKLATIMDNAEEDVLAYMTFPKEHRAKLHSTNPIERLNGEIKRRTEVVGIFPNDEAIVRLVGALLLEQNDEWAVQRARYLTLETMAQMSDDPQISLPAVAR
>NC_017324.1|WP_013844811.1|724081_725416_-|ISNCY-like-element-ISRm17-family-transposase
MRQERTVQGSIFDLFAEHEIGRELEAMSQWLDAHRDLLNLVTSDLRRQGVTETGRQGLPSEAVLRCALLKQYRQLSYEELAFHLEDSASFRAFARLPWGWSPKKSVLHKTISAIRADTWEAVNKMLLASARQERLESGRVVRVDSTVTAALIHEPSDSSLLWDCVRVMVRLLQQADSVGSTIPWHDHCRAAKKRARVIEYTRGRPKRVQHYRALLRIARNTLDYLQQAAAQLPLAAGPAGKLWQAQVRHYQPLITQIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKSGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVVAYNLALFARLRPT
>NC_017324.1|WP_014528417.1|726041_726494_+|DUF2721-domain-containing-protein
MNTPPIVTDLASVVQTSLAPVFLLAGTAGFVSIYTIRLGRVSDRLNEVADKGNQGKLFRMQLAYLRRRALALEVAVVLGVIAGICTGGAILNLLAGALAIGLRQENLFWFFGGAIVSLIGSLVAFLFELLIAGRNMLRQIRMDQIPTGQD
>NC_017324.1|WP_041867811.1|728208_728595_-|hypothetical-protein
MGMPVQDQVGSEMIIYVAEISGRGIAAFDAANDIEAQAQLANRGLLRDLIVLQNEGRALWDGVAEIHVRTATPEETEIWQTSRAAAVQSGEDSDDEGRHVFLVPVIDPSHDKFDDDDNPHDDDDRDGD
>NC_017324.1|WP_170849873.1|728616_728712_-|hypothetical-protein
MIGNRQAGWAPMSLASLRPELFCPFVVRPNE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	709941-709998	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	618048-618105	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	534472-534529	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	320258-320315	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	295298-295355	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1180665-1180722	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1086301-1086358	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1186250-1186307	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	275823-275880	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	7342-7399	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	819905-819962	0	1.0
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	347456-347513	1	0.983
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	403311-403368	1	0.983
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	347117-347174	1	0.983
NC_017324_1	1.1\|709941\|58\|NC_017324\|CRISPRCasFinder	709941-709998	58	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	373772-373829	1	0.983

1. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

2. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

3. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

4. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

5. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

6. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

7. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

8. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

9. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

10. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

11. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

12. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***************************************

13. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

14. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***************************************

15. spacer 1.1|709941|58|NC_017324|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

151381 : 158327

Sinorhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014528032.1\|151381_151975_-	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	1.9e-09	35.3
WP_014528033.1\|152451_152655_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_014528034.1\|153414_153600_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_014528035.1\|153690_153867_+	hypothetical protein	NA	NA	NA	NA
WP_014528036.1\|154025_154547_+	hypothetical protein	NA	NA	NA	NA
WP_013845271.1\|154935_155175_-	hypothetical protein	J7F8X5	Agrobacterium_phage	8.6e-17	61.8
WP_026029965.1\|155295_155547_-	hypothetical protein	A0A291AUV5	Sinorhizobium_phage	3.8e-31	80.7
WP_014531029.1\|156445_156667_+	hypothetical protein	NA	NA	NA	NA
WP_003532546.1\|157721_157874_+	hypothetical protein	A0A076GD42	Sinorhizobium_phage	1.3e-07	60.5
WP_003532548.1\|158003_158327_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	3.6e-18	47.5

DBSCAN-SWA_2

721251 : 792436

Acidithiobacillus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026029634.1\|721251_721437_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_014528301.1\|722194_723394_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	5.7e-93	47.9
WP_013844811.1\|724081_725416_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_014528417.1\|726041_726494_+	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_041867811.1\|728208_728595_-	hypothetical protein	NA	NA	NA	NA
WP_170849873.1\|728616_728712_-	hypothetical protein	NA	NA	NA	NA
WP_014528419.1\|729654_730302_+	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_014528420.1\|730781_731261_+	hypothetical protein	NA	NA	NA	NA
WP_014528421.1\|731316_731952_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014528422.1\|732066_732336_-	hypothetical protein	NA	NA	NA	NA
WP_014528423.1\|732475_734227_+	hypothetical protein	NA	NA	NA	NA
WP_014528424.1\|734275_735421_-	AI-2E family transporter	NA	NA	NA	NA
WP_014528425.1\|735922_736411_+	hypothetical protein	NA	NA	NA	NA
WP_014528426.1\|736414_737644_+	HlyD family secretion protein	NA	NA	NA	NA
WP_014528427.1\|737754_738609_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_014528428.1\|738763_739441_-	VIT1/CCC1 transporter family protein	NA	NA	NA	NA
WP_014528429.1\|739437_740583_-	calcium/proton exchanger	NA	NA	NA	NA
WP_014528430.1\|740790_741732_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014528431.1\|741761_743120_-	putrescine-ornithine antiporter	NA	NA	NA	NA
WP_014528432.1\|743147_745511_-	ornithine decarboxylase	NA	NA	NA	NA
WP_014528433.1\|745497_747768_-	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA
WP_014528434.1\|747973_748900_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_014528435.1\|749046_750372_-	amino acid permease	NA	NA	NA	NA
WP_014528436.1\|750885_751392_-	hypothetical protein	NA	NA	NA	NA
WP_014528437.1\|751582_752533_-	DUF2950 domain-containing protein	NA	NA	NA	NA
WP_014528438.1\|752553_753954_-	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_014528440.1\|754805_756035_+	arginine deiminase	NA	NA	NA	NA
WP_010967360.1\|756070_757075_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_014528441.1\|757077_758052_+	carbamate kinase	NA	NA	NA	NA
WP_014528442.1\|758270_758741_+	hypothetical protein	NA	NA	NA	NA
WP_017264323.1\|759121_759556_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_014528444.1\|760034_760976_-	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA
WP_015242477.1\|761060_761990_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014528446.1\|761986_763156_+	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	2.2e-28	28.4
WP_014528447.1\|763188_764454_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014528448.1\|764536_765442_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_003532212.1\|765453_766284_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_014528449.1\|766285_767374_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.3e-23	32.0
WP_014528450.1\|767375_768356_+	NAD(P)-dependent oxidoreductase	A0A2H4UUK0	Bodo_saltans_virus	1.4e-12	25.9
WP_014528451.1\|768334_770044_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_014528452.1\|770053_770821_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014528453.1\|772310_773789_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_014528454.1\|773778_774585_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_014528455.1\|774909_776007_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014528456.1\|776037_776928_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_014528457.1\|776924_777707_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_187292984.1\|777746_778289_+\|transposase	transposase	A0A0N9STL0	Staphylococcus_phage	3.2e-11	38.1
WP_187292985.1\|778375_778642_+	hypothetical protein	NA	NA	NA	NA
WP_014528458.1\|780061_780820_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_014528459.1\|780816_781704_+	GHMP kinase	NA	NA	NA	NA
WP_127624305.1\|781815_782484_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_014528461.1\|782795_784523_+	asparagine synthase C-terminal domain-containing protein	NA	NA	NA	NA
WP_014528462.1\|785542_786280_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_080561062.1\|786292_787822_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.6e-119	44.0
WP_011971015.1\|788507_790073_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.6
WP_011971016.1\|790144_790492_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.0e-26	54.9
WP_011971017.1\|790488_790872_-	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	1.5e-07	40.8
WP_014528465.1\|791989_792436_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	5.0e-18	47.2

DBSCAN-SWA_3

819380 : 884397

Pseudomonas_phage(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844811.1\|819380_820715_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_003537730.1\|820910_821345_+	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_010967235.1\|821656_822064_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_014332761.1\|822063_822318_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014528484.1\|824970_825300_-	hypothetical protein	NA	NA	NA	NA
WP_014528485.1\|825427_827038_-	tyrosinase family protein	NA	NA	NA	NA
WP_014528486.1\|827101_827494_-	hypothetical protein	NA	NA	NA	NA
WP_041867814.1\|831196_831790_-	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	4.3e-09	34.5
WP_014528033.1\|832272_832476_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_164832489.1\|832756_832948_+	hypothetical protein	NA	NA	NA	NA
WP_014528489.1\|835267_835513_+	hypothetical protein	NA	NA	NA	NA
WP_013844811.1\|838394_839729_+\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_014528493.1\|840645_842064_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_127529204.1\|842678_842969_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_014528496.1\|843592_844042_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.3e-17	47.5
WP_014528497.1\|844891_845617_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014528498.1\|846614_846905_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	1.5e-07	40.8
WP_014528499.1\|846972_848628_-	alpha-keto acid decarboxylase family protein	M4QSI1	Ostreococcus_lucimarinus_virus	1.1e-14	21.9
WP_014528500.1\|848647_849594_-\|transposase	IS630-like element ISRm10 family transposase	A0A2P0VP61	Tetraselmis_virus	1.3e-12	23.3
WP_014528501.1\|849712_850537_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_017267876.1\|850716_851742_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_014528503.1\|852118_853057_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_014528504.1\|853095_853575_-	hypothetical protein	NA	NA	NA	NA
WP_014528505.1\|853571_854684_-	ferritin-like protein	NA	NA	NA	NA
WP_014528506.1\|854777_856649_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_014528507.1\|856743_858186_-	glucoamylase	NA	NA	NA	NA
WP_012881237.1\|860387_860681_+	hypothetical protein	NA	NA	NA	NA
WP_014528508.1\|861127_862006_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.6e-20	26.6
WP_014528509.1\|862153_863392_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_014528510.1\|863396_864458_+	stachydrine N-demethylase reductase subunit Stc4	NA	NA	NA	NA
WP_014528512.1\|864755_865448_+	flavin reductase family protein	NA	NA	NA	NA
WP_014528513.1\|866309_866993_-	B3/4 domain-containing protein	NA	NA	NA	NA
WP_014528514.1\|867037_867661_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_014528515.1\|867736_869194_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_017268174.1\|869525_869708_-	hypothetical protein	NA	NA	NA	NA
WP_157717016.1\|871015_871543_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_170849885.1\|871908_872067_-	hypothetical protein	NA	NA	NA	NA
WP_014528517.1\|872275_872983_+	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
WP_014528518.1\|872996_873359_+	pilin major subunit VirB2	NA	NA	NA	NA
WP_003537077.1\|873355_873682_+	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_014528519.1\|873681_876051_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_014528520.1\|876064_876748_+	pilin minor subunit VirB5	NA	NA	NA	NA
WP_014528521.1\|876828_877716_+	type IV secretion system protein	NA	NA	NA	NA
WP_011970875.1\|877748_877916_+	type IV secretion system lipoprotein VirB7	NA	NA	NA	NA
WP_014528522.1\|877902_878616_+	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_014528523.1\|878612_879494_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_014528524.1\|879490_880609_+	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_014528525.1\|880648_881689_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_011971017.1\|882032_882416_+	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	1.5e-07	40.8
WP_011971016.1\|882412_882760_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.0e-26	54.9
WP_011971015.1\|882831_884397_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.6

DBSCAN-SWA_4

891526 : 958575

Corynebacterium_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014528547.1\|891526_892726_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.4e-93	47.9
WP_014528531.1\|893241_893697_+\|transposase	transposase	NA	NA	NA	NA
WP_014528532.1\|893946_894546_+	hypothetical protein	NA	NA	NA	NA
WP_013845291.1\|894785_895043_-	WGR domain-containing protein	NA	NA	NA	NA
WP_014528533.1\|895451_895937_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_026029811.1\|896807_897089_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	8.0e-14	40.9
WP_014528535.1\|898661_899354_+	flavin reductase family protein	NA	NA	NA	NA
WP_074853794.1\|900003_900351_+	transcriptional regulator	NA	NA	NA	NA
WP_014528537.1\|900430_901066_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014528539.1\|901826_903446_+	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA
WP_014528540.1\|903457_904189_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA
WP_014528541.1\|904200_904353_+	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA
WP_014528542.1\|904356_905220_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA
WP_014528543.1\|906542_907094_+	nodulation acetyltransferase NodL	NA	NA	NA	NA
WP_003534891.1\|907290_907506_+	hypothetical protein	NA	NA	NA	NA
WP_014528544.1\|907483_908914_+	nodulation protein NoeA	NA	NA	NA	NA
WP_014528545.1\|908920_910582_+	nodulation protein NoeB	NA	NA	NA	NA
WP_014528546.1\|911717_912413_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014528547.1\|912796_913996_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.4e-93	47.9
WP_014528548.1\|914259_914862_+	amino acid synthesis family protein	NA	NA	NA	NA
WP_014528549.1\|914880_915714_+	alpha/beta fold hydrolase	A0A1D8EVD1	Mycobacterium_phage	2.5e-07	37.4
WP_014528550.1\|915710_916646_+	flavin reductase family protein	NA	NA	NA	NA
WP_014528551.1\|916642_917683_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_010967420.1\|917688_919152_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003536940.1\|919157_919484_+	NIPSNAP family protein	NA	NA	NA	NA
WP_014528552.1\|919521_920532_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014528553.1\|920624_921500_+	ABC transporter permease	NA	NA	NA	NA
WP_014528554.1\|921501_922302_+	ABC transporter permease	NA	NA	NA	NA
WP_013845764.1\|922298_923378_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-30	39.3
WP_013845763.1\|923459_924932_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013845762.1\|925291_925747_+\|transposase	transposase	NA	NA	NA	NA
WP_014528555.1\|925989_926631_+	hypothetical protein	NA	NA	NA	NA
WP_014528557.1\|927458_928661_+\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_014528559.1\|929806_929986_+	hypothetical protein	NA	NA	NA	NA
WP_003532756.1\|933797_934004_-	putative nitrogen fixation protein NifT	NA	NA	NA	NA
WP_010967429.1\|934191_934386_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_014528561.1\|934417_935890_-	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA
WP_014528562.1\|936106_937732_-	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_013845758.1\|937953_938250_-	ferredoxin family protein	NA	NA	NA	NA
WP_013845757.1\|938262_939570_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_014528563.1\|939581_940694_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_014528564.1\|940674_941562_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_003532770.1\|943762_944656_+	nitrogenase iron protein	NA	NA	NA	NA
WP_003532774.1\|944755_946258_+	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_014528566.1\|946348_947890_+	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_014528567.1\|947943_949374_+	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA
WP_014528568.1\|949800_950298_+	nitrogen fixation protein NifX	NA	NA	NA	NA
WP_014528569.1\|950972_951290_+	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_003532793.1\|952339_952585_+	protein SyrA	NA	NA	NA	NA
WP_026029798.1\|952879_953821_-	transcriptional regulator NodD3	NA	NA	NA	NA
WP_013845747.1\|956549_957530_+	nod/exo genes transcriptional regulator SyrM	NA	NA	NA	NA
WP_014528500.1\|957629_958575_+\|transposase	IS630-like element ISRm10 family transposase	A0A2P0VP61	Tetraselmis_virus	1.3e-12	23.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_017322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017322_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017322_1

697698-697808

Orphan

Consensus_repeat	Method
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017322_1

>merge|NC_017322|1|697698-697808|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGTACTCCCGCCAGGAGAAAACGGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

>NC_017322|1|1|697698-697808|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CCGGAGAGGCAGGCCCGTACGTACTCCCGCCAGGAGAAAAC
GGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017322.1\|WP_003527345.1\|693063_693219_-\|hypothetical-protein	unknown	unknown	unknown
NC_017322.1\|WP_013844143.1\|684800_687128_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_017322.1\|WP_014526649.1\|701526_701928_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_017322.1\|WP_010969000.1\|698216_699215_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NC_017322.1\|WP_010969005.1\|704488_705508_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_017322.1\|WP_003527346.1\|691509_692799_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_017322.1\|WP_010968992.1\|680397_681795_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_017322.1\|WP_003527321.1\|706588_708091_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NC_017322.1\|WP_003527320.1\|708170_708491_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NC_017322.1\|WP_013844144.1\|687481_690136_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_017322.1\|WP_010969003.1\|702066_702993_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_017322.1\|WP_010969001.1\|700412_701426_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NC_017322.1\|WP_003527344.1\|693256_693433_-\|hypothetical-protein	unknown	unknown	unknown
NC_017322.1\|WP_010968996.1\|690561_691500_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_017322.1\|WP_010968993.1\|681829_684790_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NC_017322.1\|WP_010969004.1\|703008_704496_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_017322.1\|WP_010968998.1\|694504_695794_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_017322.1\|WP_003527322.1\|705603_706560_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_017322.1\|WP_003527334.1\|699435_700323_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_017322.1\|WP_010968997.1\|693571_694432_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680

Protein	Function_ID	Function_description	E-value
NC_017322.1\|WP_013844143.1\|684800_687128_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.74445e-54
NC_017322.1\|WP_014526649.1\|701526_701928_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.50623e-42
NC_017322.1\|WP_010969000.1\|698216_699215_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NC_017322.1\|WP_010969005.1\|704488_705508_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NC_017322.1\|WP_003527346.1\|691509_692799_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NC_017322.1\|WP_010968992.1\|680397_681795_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.58696e-52
NC_017322.1\|WP_003527321.1\|706588_708091_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NC_017322.1\|WP_003527320.1\|708170_708491_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NC_017322.1\|WP_013844144.1\|687481_690136_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_017322.1\|WP_010969003.1\|702066_702993_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NC_017322.1\|WP_010969001.1\|700412_701426_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NC_017322.1\|WP_010968998.1\|694504_695794_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_017322.1\|WP_010968996.1\|690561_691500_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NC_017322.1\|WP_010968993.1\|681829_684790_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NC_017322.1\|WP_010969004.1\|703008_704496_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52
NC_017322.1\|WP_003527322.1\|705603_706560_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NC_017322.1\|WP_003527334.1\|699435_700323_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NC_017322.1\|WP_010968997.1\|693571_694432_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63

>NC_017322.1|WP_010968998.1|694504_695794_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NC_017322.1|WP_010968997.1|693571_694432_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NC_017322.1|WP_003527344.1|693256_693433_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NC_017322.1|WP_003527345.1|693063_693219_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NC_017322.1|WP_003527346.1|691509_692799_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NC_017322.1|WP_010968996.1|690561_691500_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NC_017322.1|WP_013844144.1|687481_690136_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTASGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NC_017322.1|WP_013844143.1|684800_687128_-|PAS-domain-containing-protein
MDKMADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NC_017322.1|WP_010968993.1|681829_684790_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NC_017322.1|WP_010968992.1|680397_681795_+|HAMP-domain-containing-histidine-kinase
MSRISVLFRTTAVRLSALYLVLFSLCAAFLVFYVTGMSERLLQQQTRDSIAAEVTQIADVYDRAGINGLLRSLERRARQPGANLYVIAGPNGEILAGNVAALQPGLLDDEGWKSEPFRYRRFTDESRAERHVALAQVLVLDNGLRILVGRDLQEPEKFRVLVRQALMVALGIMGLGALVIWFGIGRNALRRIDRMSEASTKIMAGDLSQRLPTSGSGDEFDRLSESLNAMLERIEKLNEGLKQVSDNIAHDLKTPLTRLRNKAEAALADTEGSNQSGALEQIIAESDQLIRTFNALLMISRVEAGSAVAEMSEVDLARIVADCVELYEPLAEDKEMRIEAEAAPGVAISGNRELISQALGNLIDNAIKYAEGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESRSKPGTGLGLSLVDAVMEMHRGSLELSATEEDGRGLAVRMVFPAVAT
>NC_017322.1|WP_010969000.1|698216_699215_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NC_017322.1|WP_003527334.1|699435_700323_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NC_017322.1|WP_010969001.1|700412_701426_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NC_017322.1|WP_014526649.1|701526_701928_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAAFLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKGA
>NC_017322.1|WP_010969003.1|702066_702993_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NC_017322.1|WP_010969004.1|703008_704496_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NC_017322.1|WP_010969005.1|704488_705508_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NC_017322.1|WP_003527322.1|705603_706560_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NC_017322.1|WP_003527321.1|706588_708091_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NC_017322.1|WP_003527320.1|708170_708491_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NC_017322_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017322_2

1673404-1673515

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017322_2

>merge|NC_017322|2|1673404-1673515|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NC_017322|2|2|1673404-1673515|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017322.1\|WP_010969520.1\|1682428_1683112_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NC_017322.1\|WP_010969521.1\|1683144_1685040_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NC_017322.1\|WP_010969513.1\|1669407_1671090_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_017322.1\|WP_010969508.1\|1664079_1664763_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NC_017322.1\|WP_010969510.1\|1666253_1667447_-\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|227609
NC_017322.1\|WP_014526848.1\|1673903_1674326_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NC_017322.1\|WP_003535070.1\|1677657_1679031_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NC_017322.1\|WP_010969509.1\|1665060_1665882_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NC_017322.1\|WP_010969519.1\|1679263_1680655_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NC_017322.1\|WP_003534106.1\|1662116_1662761_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NC_017322.1\|WP_003534093.1\|1671358_1673278_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_017322.1\|WP_003535074.1\|1680859_1681402_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_017322.1\|WP_014526847.1\|1662928_1664056_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NC_017322.1\|WP_013844508.1\|1667544_1668567_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NC_017322.1\|WP_013844511.1\|1676166_1677105_+\|hypothetical-protein	unknown	unknown	unknown
NC_017322.1\|WP_003535076.1\|1681513_1682209_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_017322.1\|WP_003534108.1\|1661222_1661960_+\|autoinducer-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|99777
NC_017322.1\|WP_010969512.1\|1668577_1669405_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_017322.1\|WP_013844510.1\|1674327_1676061_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NC_017322.1\|WP_010969518.1\|1677126_1677522_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314

Protein	Function_ID	Function_description	E-value
NC_017322.1\|WP_010969520.1\|1682428_1683112_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NC_017322.1\|WP_010969513.1\|1669407_1671090_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_017322.1\|WP_010969508.1\|1664079_1664763_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NC_017322.1\|WP_010969510.1\|1666253_1667447_-\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NC_017322.1\|WP_014526848.1\|1673903_1674326_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	1.61103e-23
NC_017322.1\|WP_003535070.1\|1677657_1679031_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NC_017322.1\|WP_010969509.1\|1665060_1665882_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NC_017322.1\|WP_010969519.1\|1679263_1680655_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NC_017322.1\|WP_003534106.1\|1662116_1662761_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NC_017322.1\|WP_003534093.1\|1671358_1673278_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NC_017322.1\|WP_003535074.1\|1680859_1681402_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NC_017322.1\|WP_014526847.1\|1662928_1664056_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.28454e-30
NC_017322.1\|WP_013844508.1\|1667544_1668567_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88
NC_017322.1\|WP_010969521.1\|1683144_1685040_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017322.1\|WP_003535076.1\|1681513_1682209_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NC_017322.1\|WP_003534108.1\|1661222_1661960_+\|autoinducer-binding-domain-containing-protein	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NC_017322.1\|WP_010969512.1\|1668577_1669405_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NC_017322.1\|WP_013844510.1\|1674327_1676061_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NC_017322.1\|WP_010969518.1\|1677126_1677522_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44

>NC_017322.1|WP_003534093.1|1671358_1673278_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NC_017322.1|WP_010969513.1|1669407_1671090_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NC_017322.1|WP_010969512.1|1668577_1669405_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NC_017322.1|WP_013844508.1|1667544_1668567_+|LacI-family-DNA-binding-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NC_017322.1|WP_010969510.1|1666253_1667447_-|phytanoyl-CoA-dioxygenase-family-protein
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NC_017322.1|WP_010969509.1|1665060_1665882_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NC_017322.1|WP_010969508.1|1664079_1664763_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NC_017322.1|WP_014526847.1|1662928_1664056_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNGRRRMECSSDSVVVIGGDDEAACAELDDTIARMEASLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NC_017322.1|WP_003534106.1|1662116_1662761_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NC_017322.1|WP_003534108.1|1661222_1661960_+|autoinducer-binding-domain-containing-protein
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NC_017322.1|WP_014526848.1|1673903_1674326_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARAAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NC_017322.1|WP_013844510.1|1674327_1676061_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NC_017322.1|WP_013844511.1|1676166_1677105_+|hypothetical-protein
MPPAQEWGHAQQMQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NC_017322.1|WP_010969518.1|1677126_1677522_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NC_017322.1|WP_003535070.1|1677657_1679031_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NC_017322.1|WP_010969519.1|1679263_1680655_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NC_017322.1|WP_003535074.1|1680859_1681402_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NC_017322.1|WP_003535076.1|1681513_1682209_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NC_017322.1|WP_010969520.1|1682428_1683112_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NC_017322.1|WP_010969521.1|1683144_1685040_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

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Crispr_ID: NC_017322_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017322_3

3450347-3450493

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017322_3

>merge|NC_017322|3|3450347-3450493|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NC_017322|3|3|3450347-3450493|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017322.1\|WP_003537743.1\|3449079_3449424_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_017322.1\|WP_010968387.1\|3446660_3447470_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NC_017322.1\|WP_010968388.1\|3447600_3448992_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NC_017322.1\|WP_003531957.1\|3455526_3457386_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NC_017322.1\|WP_010968391.1\|3451493_3453122_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NC_017322.1\|WP_014527021.1\|3444028_3445012_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_017322.1\|WP_014527022.1\|3445240_3446404_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_017322.1\|WP_010968385.1\|3443010_3444021_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_017322.1\|WP_003531958.1\|3454263_3455346_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NC_017322.1\|WP_010968394.1\|3460435_3462241_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_017322.1\|WP_010968389.1\|3449432_3450287_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NC_017322.1\|WP_010968390.1\|3450523_3451483_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NC_017322.1\|WP_003531959.1\|3453130_3454264_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NC_017322.1\|WP_010968395.1\|3462258_3463077_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_017322.1\|WP_010968382.1\|3439431_3440112_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NC_017322.1\|WP_010968392.1\|3457677_3458745_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NC_017322.1\|WP_013844977.1\|3441482_3442952_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NC_017322.1\|WP_003531955.1\|3458865_3459246_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NC_017322.1\|WP_013844980.1\|3459307_3460327_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_017322.1\|WP_010968383.1\|3440134_3441421_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298

Protein	Function_ID	Function_description	E-value
NC_017322.1\|WP_003537743.1\|3449079_3449424_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NC_017322.1\|WP_010968387.1\|3446660_3447470_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NC_017322.1\|WP_010968388.1\|3447600_3448992_+\|aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NC_017322.1\|WP_003531957.1\|3455526_3457386_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_017322.1\|WP_010968391.1\|3451493_3453122_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NC_017322.1\|WP_014527021.1\|3444028_3445012_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	1.47893e-55
NC_017322.1\|WP_014527022.1\|3445240_3446404_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.34508e-26
NC_017322.1\|WP_010968385.1\|3443010_3444021_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NC_017322.1\|WP_003531958.1\|3454263_3455346_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_017322.1\|WP_010968394.1\|3460435_3462241_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_017322.1\|WP_010968389.1\|3449432_3450287_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NC_017322.1\|WP_010968390.1\|3450523_3451483_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NC_017322.1\|WP_003531959.1\|3453130_3454264_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_017322.1\|WP_010968395.1\|3462258_3463077_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NC_017322.1\|WP_010968382.1\|3439431_3440112_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	1.36517e-112
NC_017322.1\|WP_010968392.1\|3457677_3458745_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NC_017322.1\|WP_013844977.1\|3441482_3442952_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NC_017322.1\|WP_003531955.1\|3458865_3459246_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NC_017322.1\|WP_013844980.1\|3459307_3460327_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NC_017322.1\|WP_010968383.1\|3440134_3441421_+\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120

>NC_017322.1|WP_010968389.1|3449432_3450287_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NC_017322.1|WP_003537743.1|3449079_3449424_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NC_017322.1|WP_010968388.1|3447600_3448992_+|aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDEPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NC_017322.1|WP_010968387.1|3446660_3447470_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NC_017322.1|WP_014527022.1|3445240_3446404_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIPARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NC_017322.1|WP_014527021.1|3444028_3445012_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPKIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NC_017322.1|WP_010968385.1|3443010_3444021_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NC_017322.1|WP_013844977.1|3441482_3442952_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MFGKRGNEGPGKGGARGFSPAPPMPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NC_017322.1|WP_010968383.1|3440134_3441421_+|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NC_017322.1|WP_010968382.1|3439431_3440112_+|pilus-assembly-protein-CpaD
MALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NC_017322.1|WP_010968390.1|3450523_3451483_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NC_017322.1|WP_010968391.1|3451493_3453122_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NC_017322.1|WP_003531959.1|3453130_3454264_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NC_017322.1|WP_003531958.1|3454263_3455346_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NC_017322.1|WP_003531957.1|3455526_3457386_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NC_017322.1|WP_010968392.1|3457677_3458745_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NC_017322.1|WP_003531955.1|3458865_3459246_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NC_017322.1|WP_013844980.1|3459307_3460327_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NC_017322.1|WP_010968394.1|3460435_3462241_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NC_017322.1|WP_010968395.1|3462258_3463077_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1211708 : 1222957

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969277.1\|1211708_1212743_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_014526708.1\|1212815_1213655_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-32	34.7
WP_010969279.1\|1213647_1214367_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_010969280.1\|1214431_1215541_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_003534564.1\|1215635_1215842_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969282.1\|1215915_1216563_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1216559_1217402_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_003534571.1\|1217538_1218822_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_010969283.1\|1218849_1219620_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_014526709.1\|1219616_1220270_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969285.1\|1220441_1221095_+	biotin transport regulator	NA	NA	NA	NA
WP_010969286.1\|1221418_1222957_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_2

1331151 : 1422779

106

Sinorhizobium_phage(63.79%)

portal,tRNA,head,terminase,transposase,tail,holin,integrase,capsid

attL 1318157:1318173|attR 1398229:1398245

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1318157:1318173	attL	NA	NA	NA	NA
WP_011970797.1\|1331151_1332098_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_003529599.1\|1332919_1333411_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.3e-24	37.2
WP_010969321.1\|1333436_1334009_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.3e-42	55.9
WP_003529604.1\|1334034_1334544_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.9e-46	59.4
WP_014526758.1\|1334720_1335803_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_003529609.1\|1335803_1336934_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.8e-103	53.5
WP_010969324.1\|1338543_1339428_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013844449.1\|1339424_1340210_-	hypothetical protein	NA	NA	NA	NA
WP_010969325.1\|1340219_1340807_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_010969326.1\|1340940_1341525_-	lipoprotein	NA	NA	NA	NA
WP_010969327.1\|1342016_1342598_-	L,D-transpeptidase	NA	NA	NA	NA
WP_010969328.1\|1342766_1343522_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	6.7e-07	26.6
WP_014526759.1\|1343518_1344685_-	MFS transporter	NA	NA	NA	NA
WP_010969330.1\|1344696_1344909_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_014526760.1\|1345035_1346553_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013844456.1\|1346580_1346973_-	GFA family protein	NA	NA	NA	NA
WP_010969333.1\|1347210_1347933_+	hypothetical protein	NA	NA	NA	NA
WP_014526761.1\|1348271_1348724_+	hypothetical protein	NA	NA	NA	NA
WP_010969335.1\|1349545_1350382_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003528321.1\|1350383_1351163_-	TatD family hydrolase	NA	NA	NA	NA
WP_010969336.1\|1351177_1352728_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	5.1e-102	38.6
WP_010969337.1\|1352957_1353269_+	pyrophosphatase	NA	NA	NA	NA
WP_010969338.1\|1353359_1354391_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	7.3e-12	29.2
WP_003528315.1\|1354387_1355092_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.2e-35	40.3
WP_010969340.1\|1355149_1356304_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.1e-43	32.5
WP_003528312.1\|1356360_1357401_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.6e-17	51.1
WP_003528311.1\|1357851_1358067_+	hypothetical protein	NA	NA	NA	NA
WP_003528309.1\|1358127_1358388_+	hypothetical protein	NA	NA	NA	NA
WP_013844459.1\|1359200_1360688_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_010969343.1\|1360763_1362302_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	5.0e-33	28.8
WP_013844460.1\|1362668_1362833_+	hypothetical protein	NA	NA	NA	NA
WP_003528303.1\|1363057_1363774_+	transcriptional repressor LexA	A0A0N9RTK0	Paenibacillus_phage	1.2e-05	34.4
WP_014526762.1\|1364112_1365192_-	calcium-binding protein	NA	NA	NA	NA
WP_010969345.1\|1365592_1365940_+	membrane protein	NA	NA	NA	NA
WP_013844461.1\|1365987_1366281_-	hypothetical protein	NA	NA	NA	NA
WP_014526763.1\|1366667_1368002_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014526764.1\|1368227_1368887_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_014526765.1\|1368981_1372734_+	hypothetical protein	NA	NA	NA	NA
WP_011971014.1\|1373338_1373644_-	hypothetical protein	NA	NA	NA	NA
WP_011971015.1\|1373643_1375209_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-112	44.6
WP_011971016.1\|1375280_1375628_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.0e-26	54.9
WP_011971017.1\|1375624_1376008_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014526768.1\|1377329_1377515_+	hypothetical protein	NA	NA	NA	NA
WP_014526770.1\|1377778_1378453_+	SOS response-associated peptidase	A0A291AUP1	Sinorhizobium_phage	1.3e-89	65.1
WP_014526771.1\|1378461_1378635_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_014526772.1\|1378880_1379120_+	hypothetical protein	NA	NA	NA	NA
WP_014526773.1\|1379412_1379739_-\|holin	phage holin family protein	A0A291AUN9	Sinorhizobium_phage	8.9e-49	85.2
WP_014526774.1\|1379858_1380110_-	hypothetical protein	A0A291AUN8	Sinorhizobium_phage	9.9e-16	62.1
WP_014526775.1\|1380109_1380925_-	membrane protein	NA	NA	NA	NA
WP_014526776.1\|1381004_1382819_-\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	5.1e-45	38.7
WP_014526777.1\|1382830_1384333_-	hypothetical protein	A0A291AUN3	Sinorhizobium_phage	2.6e-159	55.9
WP_014526778.1\|1384332_1387086_-\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	1.4e-256	61.1
WP_014526779.1\|1387092_1387497_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	4.2e-48	72.4
WP_014526780.1\|1387660_1388647_-	DUF2806 domain-containing protein	NA	NA	NA	NA
WP_014526781.1\|1388730_1389321_-	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	2.6e-75	72.6
WP_014526782.1\|1389317_1389968_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	3.4e-76	68.4
WP_014526783.1\|1389967_1391812_-\|tail	phage tail tape measure protein	A0A291AUM6	Sinorhizobium_phage	9.2e-183	57.7
WP_014526784.1\|1391874_1392267_+	hypothetical protein	NA	NA	NA	NA
WP_014526785.1\|1392334_1392514_+	hypothetical protein	NA	NA	NA	NA
WP_017267652.1\|1392514_1392706_-\|tail	phage tail assembly chaperone	A0A291AUN4	Sinorhizobium_phage	3.5e-21	76.2
WP_014526786.1\|1392753_1393155_-	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	2.9e-49	76.9
WP_014526787.1\|1393169_1393580_-\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	9.8e-53	77.2
WP_014526788.1\|1393616_1394081_-	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	2.0e-49	64.3
WP_014526789.1\|1394082_1394379_-	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	2.5e-26	62.5
WP_014526790.1\|1394380_1394707_-	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	3.6e-34	70.8
WP_014526791.1\|1394703_1395108_-	hypothetical protein	NA	NA	NA	NA
WP_014526792.1\|1395184_1396216_-\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	6.5e-178	86.5
WP_014526793.1\|1396241_1396598_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	1.4e-44	81.4
WP_014526794.1\|1396600_1397152_-	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	1.2e-42	80.8
WP_014526795.1\|1397177_1398083_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	5.9e-143	85.1
WP_014526796.1\|1398079_1399804_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	8.0e-290	84.1
1398229:1398245	attR	NA	NA	NA	NA
WP_014526797.1\|1399800_1400037_-\|head,tail	head-to-tail joining protein	A0A291AUL5	Sinorhizobium_phage	5.8e-26	80.8
WP_014526798.1\|1400047_1402090_-\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	0.0e+00	89.2
WP_014526799.1\|1402086_1402725_-	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	4.9e-75	72.7
WP_014526800.1\|1402866_1403613_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	3.3e-115	83.9
WP_014526801.1\|1403847_1404495_-	transcription antitermination protein NusG	A0A291AUL3	Sinorhizobium_phage	1.5e-71	61.0
WP_014526802.1\|1404478_1405708_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	1.4e-107	68.9
WP_014526803.1\|1405704_1407606_-	DNA cytosine methyltransferase	A0A291AUL2	Sinorhizobium_phage	5.1e-261	71.2
WP_014526804.1\|1407592_1407907_-	hypothetical protein	A0A291AUT2	Sinorhizobium_phage	1.4e-22	64.1
WP_014526805.1\|1407906_1408404_-	DNA N-6-adenine-methyltransferase	M4QBY4	Dunaliella_viridis_virus	1.3e-35	49.7
WP_014526806.1\|1408400_1409930_-	S-adenosylmethionine-binding protein	A0A2I7QIB9	Vibrio_phage	2.6e-13	29.3
WP_014526807.1\|1409926_1410082_-	hypothetical protein	NA	NA	NA	NA
WP_014526808.1\|1410078_1410537_-	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	6.7e-34	53.5
WP_017267289.1\|1410762_1411017_-	hypothetical protein	A0A291AUR8	Sinorhizobium_phage	4.8e-26	73.7
WP_026029631.1\|1410985_1411807_+	helix-turn-helix domain-containing protein	A0A291AUR9	Sinorhizobium_phage	1.3e-120	78.7
WP_014526810.1\|1411803_1412103_-	hypothetical protein	A0A291AUR7	Sinorhizobium_phage	3.2e-29	59.4
WP_014526812.1\|1412477_1412660_+	hypothetical protein	NA	NA	NA	NA
WP_014526813.1\|1412780_1412954_+	hypothetical protein	NA	NA	NA	NA
WP_014526814.1\|1412950_1413196_+	hypothetical protein	NA	NA	NA	NA
WP_014526815.1\|1413211_1413544_+	hypothetical protein	A0A291AUJ8	Sinorhizobium_phage	4.7e-05	37.4
WP_014526816.1\|1413540_1414122_+	hypothetical protein	A0A0K1LMZ7	Caulobacter_phage	4.1e-28	54.1
WP_014526817.1\|1414118_1414622_+	DUF1643 domain-containing protein	A0A142F2K6	Mycobacterium_phage	4.4e-31	46.1
WP_014526818.1\|1414614_1414785_+	hypothetical protein	A0A291AUC9	Sinorhizobium_phage	5.0e-11	55.4
WP_014526819.1\|1414777_1415167_+	DUF4326 domain-containing protein	A0A0A8IN79	Aurantimonas_phage	2.2e-17	42.7
WP_014526820.1\|1415163_1415697_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	4.0e-30	46.9
WP_014526821.1\|1415693_1416071_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	3.0e-48	70.7
WP_014526822.1\|1416070_1416271_+	hypothetical protein	NA	NA	NA	NA
WP_014526823.1\|1416374_1417220_+	hypothetical protein	NA	NA	NA	NA
WP_014526824.1\|1417418_1417733_-	EthD family reductase	NA	NA	NA	NA
WP_010969347.1\|1418246_1418591_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_003528293.1\|1418587_1418914_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_010969348.1\|1418990_1419389_-	PIN domain-containing protein	NA	NA	NA	NA
WP_003528289.1\|1419385_1419625_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_010969349.1\|1419818_1420667_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014529584.1\|1420981_1422022_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.3e-44	38.1
WP_010969351.1\|1422029_1422779_+\|tRNA	alanyl-tRNA editing protein	NA	NA	NA	NA

DBSCAN-SWA_3

1709779 : 1790552

Sinorhizobium_phage(71.74%)

portal,tRNA,head,terminase,transposase,tail,protease,integrase,capsid

attL 1722976:1722994|attR 1801921:1801939

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969540.1\|1709779_1710481_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_003535321.1\|1710500_1711262_-	ABC transporter permease	NA	NA	NA	NA
WP_003535323.1\|1711258_1712185_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.7e-24	34.7
WP_010969541.1\|1712305_1712623_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010969542.1\|1712828_1713353_-	acetyltransferase	NA	NA	NA	NA
WP_010969543.1\|1713345_1713636_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_010969544.1\|1713775_1714411_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014529448.1\|1714389_1714572_+	hypothetical protein	NA	NA	NA	NA
WP_017263222.1\|1714578_1714959_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_003535329.1\|1715188_1716403_-	extensin family protein	NA	NA	NA	NA
WP_010969547.1\|1716634_1717189_-	membrane protein	NA	NA	NA	NA
WP_010969548.1\|1717422_1719237_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.5e-12	47.2
WP_003535335.1\|1719446_1719836_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010969549.1\|1719847_1720438_+	hypothetical protein	NA	NA	NA	NA
WP_003535339.1\|1720467_1720821_-	DMT family protein	NA	NA	NA	NA
WP_003535341.1\|1721035_1723993_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
1722976:1722994	attL	NA	NA	NA	NA
WP_014526852.1\|1724291_1724903_+	hypothetical protein	NA	NA	NA	NA
WP_010969551.1\|1725172_1725790_-	J domain-containing protein	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	5.3e-10	48.3
WP_003535347.1\|1726621_1726834_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.6e-12	54.5
WP_014526853.1\|1726961_1728119_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_014526854.1\|1728212_1729310_+\|integrase	site-specific integrase	I6NSG1	Burkholderia_phage	1.7e-115	58.2
WP_014526855.1\|1729613_1730726_+	DNA methylase	G1D1F5	Mycobacterium_virus	1.3e-22	28.6
WP_014526856.1\|1730709_1731351_+	hypothetical protein	NA	NA	NA	NA
WP_014526857.1\|1731343_1732330_+	AAA family ATPase	NA	NA	NA	NA
WP_014526858.1\|1732329_1733685_+	5-methylcytosine restriction system component-like protein	NA	NA	NA	NA
WP_014526859.1\|1733817_1734828_-	hypothetical protein	A0A076GD42	Sinorhizobium_phage	1.4e-124	66.9
WP_017264859.1\|1734927_1735098_+	hypothetical protein	NA	NA	NA	NA
WP_014526861.1\|1735602_1735776_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_017264856.1\|1736792_1736993_-	hypothetical protein	NA	NA	NA	NA
WP_014526862.1\|1737045_1737411_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	1.2e-41	71.7
WP_014526863.1\|1737465_1737708_-	hypothetical protein	J7F8X5	Agrobacterium_phage	1.1e-16	61.8
WP_014526864.1\|1737828_1738797_-	glycoside hydrolase family 19 protein	A0A076G6J8	Sinorhizobium_phage	4.8e-167	88.0
WP_014526866.1\|1739228_1739558_+	hypothetical protein	A0A291AUP2	Sinorhizobium_phage	3.3e-27	58.8
WP_014526868.1\|1740544_1742569_-\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	2.6e-53	31.2
WP_014526869.1\|1742580_1744101_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	4.1e-245	80.2
WP_014526870.1\|1744100_1746848_-\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	2.2e-257	61.8
WP_014526871.1\|1746854_1747259_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	9.3e-48	72.4
WP_014526872.1\|1747358_1747949_-	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	7.7e-75	71.6
WP_014526873.1\|1747945_1748596_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	5.1e-80	71.6
WP_014526874.1\|1748595_1750467_-\|tail	tail tape measure protein TP901 core region	A0A291AUM6	Sinorhizobium_phage	9.3e-183	58.3
WP_014526875.1\|1750572_1750752_+	hypothetical protein	NA	NA	NA	NA
WP_014526876.1\|1750752_1750944_-	hypothetical protein	A0A291AUN4	Sinorhizobium_phage	2.5e-19	72.6
WP_014526877.1\|1750991_1751393_-	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	1.1e-48	76.9
WP_011975792.1\|1751405_1751816_-\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_014526878.1\|1751851_1752316_-	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	1.6e-51	68.2
WP_014526879.1\|1752317_1752614_-	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	1.3e-27	62.9
WP_014526880.1\|1752616_1752943_-	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	6.2e-34	69.8
WP_014526881.1\|1752939_1753344_-	hypothetical protein	A0A291AUM1	Sinorhizobium_phage	4.7e-15	60.6
WP_014526882.1\|1753416_1754448_-\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	2.1e-176	85.9
WP_014526883.1\|1754473_1754830_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	1.5e-46	83.9
WP_014526884.1\|1754832_1755375_-	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	6.4e-44	78.8
WP_014526885.1\|1755400_1756306_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	1.3e-145	86.4
WP_014526886.1\|1756302_1758027_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	2.3e-289	84.2
WP_014526887.1\|1758023_1758260_-\|head,tail	head-to-tail joining protein	A0A291AUL5	Sinorhizobium_phage	2.2e-25	78.2
WP_014526888.1\|1758270_1760313_-\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	0.0e+00	90.0
WP_014526889.1\|1760309_1760948_-	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	8.3e-75	72.7
WP_014526890.1\|1761090_1761837_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	5.1e-116	84.3
WP_014526891.1\|1762064_1762724_-	antitermination factor NusG	NA	NA	NA	NA
WP_017263186.1\|1762707_1763946_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	3.0e-97	67.6
WP_014526893.1\|1763942_1764245_-	hypothetical protein	A0A291AUK8	Sinorhizobium_phage	7.3e-21	56.1
WP_014526894.1\|1764241_1765765_-	S-adenosylmethionine-binding protein	A0A2I7QIB9	Vibrio_phage	6.7e-14	28.6
WP_014526895.1\|1765761_1765968_-	hypothetical protein	NA	NA	NA	NA
WP_014526896.1\|1765964_1766213_-	hypothetical protein	NA	NA	NA	NA
WP_014526897.1\|1766212_1766434_-	hypothetical protein	NA	NA	NA	NA
WP_014526898.1\|1766433_1766886_-	hypothetical protein	NA	NA	NA	NA
WP_014526899.1\|1767105_1767357_-	hypothetical protein	R9TNB3	Rhizobium_phage	9.6e-11	50.7
WP_017263188.1\|1767445_1768147_+	LexA family transcriptional regulator	R9TRS6	Rhizobium_phage	2.1e-55	47.2
WP_014526901.1\|1768365_1768551_+	hypothetical protein	NA	NA	NA	NA
WP_014526902.1\|1768673_1768847_+	hypothetical protein	NA	NA	NA	NA
WP_014526903.1\|1768857_1769037_+	hypothetical protein	NA	NA	NA	NA
WP_014526904.1\|1769036_1769213_+	hypothetical protein	NA	NA	NA	NA
WP_014526905.1\|1769205_1769388_+	hypothetical protein	A0A291AUC9	Sinorhizobium_phage	4.1e-11	61.5
WP_014526906.1\|1769384_1769759_+	DUF4326 domain-containing protein	A0A291AUQ7	Sinorhizobium_phage	2.6e-20	43.3
WP_014526907.1\|1769755_1770295_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	1.1e-27	45.8
WP_014526908.1\|1770291_1770657_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	4.6e-46	68.9
WP_011975823.1\|1770659_1770953_+	pyocin activator PrtN family protein	I6NSR8	Burkholderia_phage	2.6e-23	62.4
WP_014526909.1\|1771155_1771977_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_014526910.1\|1772882_1776251_+	AAA family ATPase	A0A218MLZ2	uncultured_virus	2.9e-09	30.0
WP_014526912.1\|1776971_1777496_+	hypothetical protein	NA	NA	NA	NA
WP_003536840.1\|1777655_1777904_-	hypothetical protein	NA	NA	NA	NA
WP_003536844.1\|1778338_1778575_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_003536846.1\|1779018_1779228_+	hypothetical protein	NA	NA	NA	NA
WP_003536848.1\|1779414_1780101_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_010969554.1\|1780152_1780683_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_003536852.1\|1780692_1781088_-	transcriptional repressor	NA	NA	NA	NA
WP_010969555.1\|1781087_1781915_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_013844580.1\|1781907_1782816_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	7.8e-10	28.3
WP_010969557.1\|1782960_1783983_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_013844581.1\|1784376_1784757_-	RcnB family protein	NA	NA	NA	NA
WP_010969559.1\|1784885_1786511_-	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_010969560.1\|1786861_1787437_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_013844582.1\|1787433_1789227_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_041867786.1\|1789379_1790552_+\|transposase	IS481-like element ISRm20 family transposase	NA	NA	NA	NA
1801921:1801939	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2215460 : 2225095

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2215460_2217515_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_013844736.1\|2217947_2218982_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2219005_2220193_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2220452_2222363_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2222408_2224412_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2224645_2225095_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_5

2256861 : 2306419

Klosneuvirus(14.29%)

holin,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969874.1\|2256861_2257581_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|2257636_2257942_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2258172_2259276_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_013844745.1\|2259482_2259653_-	hypothetical protein	NA	NA	NA	NA
WP_003534506.1\|2259748_2260204_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2260200_2260671_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2260716_2261259_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2261433_2261619_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010969879.1\|2261637_2262897_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_010969880.1\|2262893_2263526_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|2263522_2264146_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_010969882.1\|2264504_2265518_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2265521_2266442_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2266438_2269252_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2269262_2271332_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|2271346_2271898_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2272155_2273148_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2273313_2273520_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010969889.1\|2273582_2274491_+	cell filamentation protein	NA	NA	NA	NA
WP_010969890.1\|2274615_2275107_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2275189_2276092_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2276285_2276801_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2276804_2277632_+	anti-sigma factor	NA	NA	NA	NA
WP_003534446.1\|2277754_2278183_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|2278179_2278431_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_014526953.1\|2278568_2280278_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534438.1\|2280749_2281337_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_017263274.1\|2283376_2284300_-	phosphotransferase	Q75ZG1	Hepacivirus	8.8e-17	30.2
WP_010969898.1\|2284319_2284784_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|2284780_2285701_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|2285869_2288059_-	anthranilate synthase	NA	NA	NA	NA
WP_178385068.1\|2288173_2288218_-	trpE operon leader peptide TrpLE	NA	NA	NA	NA
WP_014526954.1\|2288332_2290564_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_017272446.1\|2290840_2291674_+	extensin family protein	NA	NA	NA	NA
WP_013844754.1\|2291834_2293541_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2293604_2294828_-	DUF2333 family protein	NA	NA	NA	NA
WP_010969905.1\|2294831_2296121_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2296304_2297468_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2297644_2298049_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2298161_2300078_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2300081_2301230_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|2301291_2302380_-	hypothetical protein	NA	NA	NA	NA
WP_014526955.1\|2302456_2303128_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	6.1e-52	54.7
WP_010969911.1\|2303414_2304371_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|2304527_2305373_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|2305369_2306419_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017323

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017324

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_017322

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection