CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_015596	Sinorhizobium meliloti AK83 chromosome 2, complete sequence	1 crisprs	csa3,RT	1	1
NC_015592	Sinorhizobium meliloti AK83 plasmid pSINME02, complete sequence	0 crisprs	NA	0	0
NC_015591	Sinorhizobium meliloti AK83 chromosome 3, complete sequence	0 crisprs	DEDDh,RT	0	4
NC_015597	Sinorhizobium meliloti AK83 plasmid pSINME01, complete sequence	0 crisprs	NA	0	1
NC_015590	Sinorhizobium meliloti AK83 chromosome 1, complete sequence	3 crisprs	csa3,WYL,cas3,DEDDh	1	9

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015596_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015596_1

1080019-1080255

Orphan

Consensus_repeat	Method
CGCCGGCGCCGCCGATGCCGCCGCCGCCGCCGATCGACTGCGCGACGA	PILER-CR

2 spacers

The CRISPR arrays of NC_015596_1

>merge|NC_015596|1|1080019-1080255|PILER-CR
CGCCGGCGCCGCCGATGCCGCCGCCGCCGCCGATCGATTGGGCGACGAGGCCGAATGCCCTTGCGCCGGAAGTGTTGAGGGTCGTGCCGACGCTGAGATCGACCTCGCCGCCGCTGCCGCCGACACCGCCGCTGCCGCCGACAACAAGATCGATCGTGTGGCTGTGCTCTTTCTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGATGCCGCCGCCGCCGCCGATCGACTGCGCGGCGA

>NC_015596|1|1|1080019-1080255|PILER-CR
CGCCGGCGCCGCCGATGCCGCCGCCGCCGCCGATCGATTGGGCGACGA	GGCCGAATGCCCTTGCGCCGGAAGTGTTGAGGGTCGTGCCGACGCTGAGATCGACCTCGC
CGCCGCTGCCGCCGACACCGCCGCTGCCGCCGACAACAAGATCGATCG	TGTGGCTGTGCTCTTTCTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGA
TGCCGCCGCCGCCGCCGATCGACTGCGCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015596.1\|WP_013850625.1\|1092943_1094107_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_015596.1\|WP_010975842.1\|1066748_1067372_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_015596.1\|WP_013850621.1\|1084838_1085990_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_015596.1\|WP_013850622.1\|1085977_1086760_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_015596.1\|WP_013850613.1\|1068342_1070568_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_015596.1\|WP_013850619.1\|1076615_1077527_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_015596.1\|WP_013850624.1\|1090895_1092938_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_015596.1\|WP_010975844.1\|1064113_1065376_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_015596.1\|WP_013850616.1\|1073670_1074180_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_015596.1\|WP_010975839.1\|1070648_1072430_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625
NC_015596.1\|WP_010975829.1\|1086848_1087247_-\|hypothetical-protein	unknown	unknown	unknown
NC_015596.1\|WP_010975841.1\|1067368_1068346_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_015596.1\|WP_015008257.1\|1074342_1074930_-\|hypothetical-protein	unknown	unknown	unknown
NC_015596.1\|WP_013850623.1\|1087372_1090711_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_015596.1\|WP_013850629.1\|1098680_1099877_-\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_015596.1\|WP_013850618.1\|1075293_1076508_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_015596.1\|WP_013850628.1\|1097378_1098653_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_015596.1\|WP_010975843.1\|1065658_1066549_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_015596.1\|WP_013850627.1\|1095924_1097382_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_015596.1\|WP_013850626.1\|1094196_1095219_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494

Protein	Function_ID	Function_description	E-value
NC_015596.1\|WP_010975839.1\|1070648_1072430_-\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170
NC_015596.1\|WP_010975842.1\|1066748_1067372_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_015596.1\|WP_013850621.1\|1084838_1085990_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.29969e-169
NC_015596.1\|WP_013850613.1\|1068342_1070568_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_015596.1\|WP_013850619.1\|1076615_1077527_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_015596.1\|WP_013850625.1\|1092943_1094107_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_015596.1\|WP_010975844.1\|1064113_1065376_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.44397e-52
NC_015596.1\|WP_013850616.1\|1073670_1074180_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.33542e-16
NC_015596.1\|WP_013850622.1\|1085977_1086760_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.37612e-67
NC_015596.1\|WP_013850624.1\|1090895_1092938_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_015596.1\|WP_010975841.1\|1067368_1068346_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_015596.1\|WP_013850618.1\|1075293_1076508_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	3.00966e-65
NC_015596.1\|WP_013850623.1\|1087372_1090711_-\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	9.65585e-25
NC_015596.1\|WP_013850629.1\|1098680_1099877_-\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_015596.1\|WP_013850628.1\|1097378_1098653_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	3.47103e-172
NC_015596.1\|WP_010975843.1\|1065658_1066549_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_015596.1\|WP_013850627.1\|1095924_1097382_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_015596.1\|WP_013850626.1\|1094196_1095219_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NC_015596.1|WP_013850619.1|1076615_1077527_-|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_015596.1|WP_013850618.1|1075293_1076508_-|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_015596.1|WP_015008257.1|1074342_1074930_-|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NC_015596.1|WP_013850616.1|1073670_1074180_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPCRDVIERGVESLLLSFDRPI
>NC_015596.1|WP_010975839.1|1070648_1072430_-|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_015596.1|WP_013850613.1|1068342_1070568_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHVEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_015596.1|WP_010975841.1|1067368_1068346_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_015596.1|WP_010975842.1|1066748_1067372_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_015596.1|WP_010975843.1|1065658_1066549_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_015596.1|WP_010975844.1|1064113_1065376_+|HAMP-domain-containing-histidine-kinase
MRSRLFLKIYLTLLASLAAVAVASAAFVWLGQGEEESGWQSQRARFVAALIPPDMDNRTVEATIERFSRAFDADIAVYDPRGRLIASGGSPIPRDILDQPWRHGPGNFHTMVTELPDGRTVAARMERPLRPSGRNPLAYLALIAGVIGLAAYPVVRHLTRRLERLRVGVDAWGKGDFVVRVPEDGSDEVAAVAKSFNRAADQVERLIKSHRALLANASHELRSPLARLRMAIDLYEQAPNDDRKQEIIRNLSELDTLIEEILLASRLDHVEKLDALESVDLLALVSEEGARNDVEVFGMPAIVACDARLLRRLVRNLLQNALHHGGPPVTAAVAQADDAAILRVRDHGPGIADSERHRVFEPFYRPSGRSEAAGGWGLGLALVRQIAERHGGAVSYESPPDGGACFVVTLPVQSKPVRDR
>NC_015596.1|WP_013850621.1|1084838_1085990_+|histidine-kinase
MVVIAKPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRIRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGDRDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NC_015596.1|WP_013850622.1|1085977_1086760_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTTTVPPVAMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_015596.1|WP_010975829.1|1086848_1087247_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_015596.1|WP_013850623.1|1087372_1090711_-|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGADTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGRGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDMLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFYSIENLIGSDDRIDRFVGTSAANHFWGQGGGDYFNGGDGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGLDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLGLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGQGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPLPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_015596.1|WP_013850624.1|1090895_1092938_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFRPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTAWEEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDYGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGIGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_015596.1|WP_013850625.1|1092943_1094107_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIGGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALSMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_015596.1|WP_013850626.1|1094196_1095219_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIKNLPDDVADKMIKNDFEWAANNRSRILKEWQKRYDAKSEPKS
>NC_015596.1|WP_013850627.1|1095924_1097382_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLSAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEASLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIVPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKSFSLPWP
>NC_015596.1|WP_013850628.1|1097378_1098653_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGSVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGIDVVLDREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAGAGAEGGL
>NC_015596.1|WP_013850629.1|1098680_1099877_-|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKEAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFSFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMGVDTATPPALALAERARLAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651280-651327	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636274-636321	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233321-233368	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644339-644386	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634148-634195	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302076-1302123	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895572-895619	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558325-558372	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422939-1422986	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794880-794927	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657953-658000	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085460-1085507	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151682-1151729	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773080-773127	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292537-292584	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373452-373499	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226039-1226086	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998722-998769	3	0.938
NC_015596_1	1.2\|1080175\|48\|NC_015596\|PILER-CR	1080175-1080222	48	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085465-1085512	3	0.938

1. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

2. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

3. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

4. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

5. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

6. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

7. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

8. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

9. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

10. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

11. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

12. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

13. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

14. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

15. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

16. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

17. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

18. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

19. spacer 1.2|1080175|48|NC_015596|PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.938

caacaagatcgatcgtgtggctgtgctctttctcggcggccgtgctgc	CRISPR spacer
cgacgagatcgatcgtgtggctgtgctctttttcggcggccgtgctgc	Protospacer
*.**.**************************.****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

705882 : 713830

Escherichia_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010976192.1\|705882_706788_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.3e-70	49.3
WP_010976191.1\|706930_707935_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.2e-13	26.8
WP_013850369.1\|707951_708629_+	aldolase	A0A077SK32	Escherichia_phage	6.8e-51	50.2
WP_148267202.1\|708766_709780_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	9.9e-22	30.5
WP_013850371.1\|710107_710872_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_013850372.1\|710916_711900_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013850373.1\|711901_712678_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	6.5e-05	28.2
WP_013850374.1\|712762_713830_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	4.5e-25	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015591

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

296707 : 416728

Sinorhizobium_phage(10.0%)

transposase,protease,integrase

attL 293457:293473|attR 339008:339024

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
293457:293473	attL	NA	NA	NA	NA
WP_013845220.1\|296707_297883_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014989489.1\|297910_298186_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013845222.1\|298185_298446_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_013845223.1\|298817_299237_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_013845224.1\|299233_299476_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_013845225.1\|299906_301574_+\|transposase	transposase	NA	NA	NA	NA
WP_013845226.1\|301576_301897_-	hypothetical protein	NA	NA	NA	NA
WP_013845227.1\|301953_302523_-	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	6.0e-16	46.6
WP_041915267.1\|302570_303488_-	hypothetical protein	NA	NA	NA	NA
WP_013845229.1\|303946_305974_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_041915268.1\|305982_307713_+	ATP-dependent helicase	NA	NA	NA	NA
WP_050812802.1\|307795_308905_-	hypothetical protein	NA	NA	NA	NA
WP_013843899.1\|310638_311451_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.6e-28	35.7
WP_050812803.1\|311622_313773_-	N-6 DNA methylase	A0A2R2ZGH5	Clostridioides_phage	1.6e-98	33.5
WP_013845231.1\|313857_314079_-	hypothetical protein	NA	NA	NA	NA
WP_013845232.1\|314081_316598_-	Hsp70 family protein	A0A2H4UVL6	Bodo_saltans_virus	2.0e-31	27.7
WP_013845233.1\|316616_316973_-	hypothetical protein	NA	NA	NA	NA
WP_143058437.1\|316972_318883_-	hypothetical protein	NA	NA	NA	NA
WP_013845235.1\|319204_320938_-	hypothetical protein	NA	NA	NA	NA
WP_013845236.1\|321398_321602_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.0e-10	50.7
WP_013845237.1\|322074_323169_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_010967242.1\|323297_323606_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_013845238.1\|323602_323896_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_013845239.1\|324157_325357_-	NAD-dependent formate dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	6.7e-17	27.3
WP_074935271.1\|325603_325861_+	hypothetical protein	NA	NA	NA	NA
WP_033049384.1\|326860_327610_-	carbonic anhydrase	NA	NA	NA	NA
WP_003537730.1\|331494_331929_-	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_013844811.1\|332263_333598_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_013845242.1\|336697_338335_-	chaperonin GroEL	A0A219YK78	uncultured_virus	3.0e-177	63.3
WP_013845243.1\|338410_338707_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_013845245.1\|339979_340237_-	acyl carrier protein	NA	NA	NA	NA
339008:339024	attR	NA	NA	NA	NA
WP_013845247.1\|341354_341534_-	hypothetical protein	NA	NA	NA	NA
WP_014530994.1\|342305_342929_+	hypothetical protein	F1C5D5	Cronobacter_phage	1.1e-52	51.5
WP_017277577.1\|342929_343175_-	hypothetical protein	NA	NA	NA	NA
WP_013845250.1\|345121_346324_+	cytochrome P450	NA	NA	NA	NA
WP_013845251.1\|347689_349639_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_013845252.1\|349666_350059_+	hypothetical protein	NA	NA	NA	NA
WP_013845253.1\|350122_351733_+	tyrosinase family protein	NA	NA	NA	NA
WP_013845254.1\|351861_352191_+	hypothetical protein	NA	NA	NA	NA
WP_003532601.1\|353407_354373_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_014531006.1\|354452_354743_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.4e-08	53.3
WP_003532599.1\|355398_356166_+	response regulator transcription factor	NA	NA	NA	NA
WP_003532595.1\|357343_358120_+	hypothetical protein	NA	NA	NA	NA
WP_013845255.1\|358283_359012_+	hypothetical protein	NA	NA	NA	NA
WP_041915213.1\|359072_359594_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_013845257.1\|359722_360313_+	NYN domain-containing protein	NA	NA	NA	NA
WP_013843899.1\|361210_362023_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.6e-28	35.7
WP_013843900.1\|362019_363528_-\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_013845259.1\|364190_364544_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.2e-20	46.2
WP_013845260.1\|364524_364983_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.5e-06	48.6
WP_017265677.1\|365895_367701_+	EAL domain-containing protein	G3MA91	Bacillus_virus	7.0e-18	33.9
WP_143058440.1\|369249_369489_-	hypothetical protein	NA	NA	NA	NA
WP_013845262.1\|371097_372117_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_003532569.1\|372260_372737_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_017266461.1\|372912_373254_-	thiazole synthase	NA	NA	NA	NA
WP_013845264.1\|373406_374525_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086018103.1\|374912_376018_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.6e-12	29.5
WP_074935196.1\|376062_376242_-	thiazole biosynthesis family protein	NA	NA	NA	NA
WP_013845267.1\|376245_376443_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_143058433.1\|377199_377451_+	hypothetical protein	NA	NA	NA	NA
WP_003532558.1\|377513_378569_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_014531026.1\|378803_378974_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003532552.1\|378970_379537_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_015241580.1\|379514_379922_-	cytochrome P450	NA	NA	NA	NA
WP_003532548.1\|380295_380619_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	3.6e-18	47.5
WP_041915217.1\|380748_380901_-	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	1.6e-08	62.8
WP_014531029.1\|381965_382187_-	hypothetical protein	NA	NA	NA	NA
WP_013845270.1\|383057_383309_+	hypothetical protein	A0A291AUV5	Sinorhizobium_phage	1.7e-31	81.9
WP_013845271.1\|383429_383669_+	hypothetical protein	J7F8X5	Agrobacterium_phage	8.6e-17	61.8
WP_013845273.1\|384057_384579_-	hypothetical protein	NA	NA	NA	NA
WP_013845275.1\|385234_385423_-	hypothetical protein	NA	NA	NA	NA
WP_014528033.1\|385865_386069_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_013845278.1\|386553_387147_+	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	3.3e-09	34.5
WP_177188742.1\|389733_390183_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_013845279.1\|390809_391259_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	7.2e-17	47.5
WP_086018105.1\|391467_392228_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-23	42.1
WP_013845284.1\|393876_394758_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.0e-51	45.4
WP_013845285.1\|396600_396795_-	hypothetical protein	NA	NA	NA	NA
WP_011970797.1\|397978_398925_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_013845287.1\|400022_400715_+	stachydrine N-demethylase Stc3	NA	NA	NA	NA
WP_013845288.1\|401637_402243_+	hypothetical protein	NA	NA	NA	NA
WP_013845289.1\|402612_403068_+\|transposase	transposase	NA	NA	NA	NA
WP_013845290.1\|403319_403919_+	hypothetical protein	NA	NA	NA	NA
WP_013845291.1\|404156_404414_-	WGR domain-containing protein	NA	NA	NA	NA
WP_013845292.1\|406271_406757_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017264588.1\|406969_407194_-	hypothetical protein	NA	NA	NA	NA
WP_013845293.1\|407244_407556_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013845294.1\|407569_407851_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	1.0e-13	40.9
WP_013845295.1\|408653_409046_-	hypothetical protein	NA	NA	NA	NA
WP_003537140.1\|409049_409247_-	hypothetical protein	NA	NA	NA	NA
WP_013845297.1\|409479_410193_-	ParA family protein	A0A2H4JGZ2	uncultured_Caudovirales_phage	3.8e-12	28.9
WP_013845298.1\|410870_411272_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_013845299.1\|411275_413762_+	hypothetical protein	NA	NA	NA	NA
WP_013845300.1\|413767_413977_+	hypothetical protein	NA	NA	NA	NA
WP_011970797.1\|414581_415528_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_013844528.1\|415894_416728_-\|transposase	IS5-like element ISRm4-3 family transposase	A0A0M5M147	Mycobacterium_phage	1.6e-09	26.8

DBSCAN-SWA_2

771686 : 847383

Stx2-converting_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013845567.1\|771686_772142_-\|transposase	transposase	NA	NA	NA	NA
WP_013845568.1\|772460_773858_+	endo-1,3-1,4-beta-glycanase EglC	A0A0F6SIL6	Sinorhizobium_phage	1.9e-18	30.0
WP_162198851.1\|775091_775568_-	ester cyclase	NA	NA	NA	NA
WP_013845570.1\|775973_779363_-	AAA family ATPase	NA	NA	NA	NA
WP_017266584.1\|779493_780993_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013845572.1\|782809_783526_-	molecular chaperone	NA	NA	NA	NA
WP_013844870.1\|783757_785110_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	2.3e-58	50.8
WP_013845573.1\|785228_786965_+	Kef family K(+) transporter	NA	NA	NA	NA
WP_013845574.1\|787244_788120_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010967841.1\|789290_790268_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013845576.1\|790813_791737_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013845577.1\|791841_792501_+	DUF924 family protein	A0A1V0SIY0	Klosneuvirus	6.5e-14	32.1
WP_013845578.1\|792641_793421_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010967855.1\|793420_793741_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_010967856.1\|793789_794743_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013845580.1\|796011_796353_-	hypothetical protein	NA	NA	NA	NA
WP_013844811.1\|797668_799003_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_013845581.1\|799101_799407_-	hypothetical protein	NA	NA	NA	NA
WP_010967860.1\|799553_799829_+	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_013845582.1\|799841_801164_+	MFS transporter	NA	NA	NA	NA
WP_013845583.1\|801595_802315_+	nickel/cobalt transporter	NA	NA	NA	NA
WP_010967865.1\|803193_804216_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-22	33.9
WP_013845584.1\|804212_805208_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-11	27.5
WP_010967867.1\|805197_806109_-	ABC transporter permease	NA	NA	NA	NA
WP_013845586.1\|806099_807035_-	ABC transporter permease	NA	NA	NA	NA
WP_013845587.1\|807048_808626_-	nickel ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013845588.1\|808891_809677_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_013845589.1\|809679_810405_+	flavin reductase family protein	NA	NA	NA	NA
WP_013845590.1\|810567_811266_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013845591.1\|812685_813270_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013845592.1\|813706_816841_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_013845593.1\|816837_818004_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010967878.1\|818340_818820_-	YqhA family protein	NA	NA	NA	NA
WP_013845594.1\|819109_820537_+	amino acid permease	NA	NA	NA	NA
WP_010967880.1\|820956_822378_+	amino acid permease	NA	NA	NA	NA
WP_013845595.1\|822393_823653_+	arginine deiminase	NA	NA	NA	NA
WP_013845596.1\|823760_824051_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_010967882.1\|824216_824711_+	DUF1269 domain-containing protein	NA	NA	NA	NA
WP_013845597.1\|824711_824963_+	hypothetical protein	NA	NA	NA	NA
WP_010967884.1\|825117_825768_+	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_010967885.1\|825828_826887_-	AI-2E family transporter	NA	NA	NA	NA
WP_013845598.1\|826971_828276_-	amidohydrolase family protein	NA	NA	NA	NA
WP_014990195.1\|828685_828961_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_127514411.1\|829031_829241_-	hypothetical protein	NA	NA	NA	NA
WP_013845599.1\|831683_832697_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_010967890.1\|832779_834447_-	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	1.4e-49	32.0
WP_017267363.1\|834888_836667_+	sensor histidine kinase	A0A2K9L0Z8	Tupanvirus	3.8e-08	25.6
WP_010967892.1\|836663_837305_+	response regulator transcription factor	NA	NA	NA	NA
WP_010967893.1\|837386_837803_+	response regulator	NA	NA	NA	NA
WP_017270554.1\|838345_839800_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_010967896.1\|841407_842604_+	sensor histidine kinase	NA	NA	NA	NA
WP_013845602.1\|842819_843404_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	3.6e-16	37.2
WP_086018109.1\|843403_845061_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.8e-104	44.2
WP_013845604.1\|845140_845488_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.8e-32	55.1
WP_074935214.1\|845484_845868_-\|transposase	transposase	NA	NA	NA	NA
WP_010967897.1\|846066_846666_-	hypothetical protein	NA	NA	NA	NA
WP_010967898.1\|846927_847383_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1041487 : 1106289

Stx2-converting_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013845737.1\|1041487_1043107_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.0e-76	35.4
WP_013845739.1\|1044062_1044989_-	transcriptional regulator NodD1	NA	NA	NA	NA
WP_010967455.1\|1045254_1045845_+	nodulation N-acyltransferase NodA	NA	NA	NA	NA
WP_003532851.1\|1045841_1046495_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_013845740.1\|1046509_1047790_+	chitooligosaccharide synthase NodC	M1GYM3	Paramecium_bursaria_Chlorella_virus	3.4e-11	26.6
WP_010967453.1\|1047797_1048865_+	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	3.1e-26	29.9
WP_010967452.1\|1048868_1049657_+	ABC transporter permease	NA	NA	NA	NA
WP_013845741.1\|1051219_1053145_-	bifunctional sulfate adenylyltransferase/adenylyl-sulfate kinase NodQ	A0A2K9L0F0	Tupanvirus	2.5e-26	49.7
WP_010967449.1\|1053144_1054044_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_013845742.1\|1054456_1055194_-	host-specificity nodulation protein HsnC	A0A0K0KVL6	Prochlorococcus_phage	2.4e-09	29.6
WP_013845744.1\|1055687_1056896_-	host-specificity nodulation protein HsnB	NA	NA	NA	NA
WP_003532819.1\|1056896_1057178_-	host-specificity nodulation protein HsnA	NA	NA	NA	NA
WP_013845745.1\|1057855_1058599_+	host-specificity nodulation protein HsnD	NA	NA	NA	NA
WP_013845747.1\|1059401_1060382_-	nod/exo genes transcriptional regulator SyrM	NA	NA	NA	NA
WP_013845260.1\|1062183_1062642_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.5e-06	48.6
WP_013845259.1\|1062622_1062976_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.2e-20	46.2
WP_026029798.1\|1065713_1066655_+	transcriptional regulator NodD3	NA	NA	NA	NA
WP_003532793.1\|1066949_1067195_-	protein SyrA	NA	NA	NA	NA
WP_011970912.1\|1068245_1068563_-	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_013845750.1\|1069237_1069735_-	nitrogen fixation protein NifX	NA	NA	NA	NA
WP_013845751.1\|1070164_1071592_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA
WP_013845752.1\|1071645_1073187_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_013845753.1\|1073277_1074780_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_003532770.1\|1074879_1075773_-	nitrogenase iron protein	NA	NA	NA	NA
WP_164819954.1\|1076863_1077331_-	hypothetical protein	NA	NA	NA	NA
WP_013845755.1\|1077981_1078869_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_013845756.1\|1078849_1079962_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_013845757.1\|1079973_1081281_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_013845758.1\|1081293_1081590_+	ferredoxin family protein	NA	NA	NA	NA
WP_013845759.1\|1081811_1083437_+	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_013845760.1\|1083653_1085126_+	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA
WP_010967429.1\|1085157_1085352_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_003532756.1\|1085539_1085746_+	putative nitrogen fixation protein NifT	NA	NA	NA	NA
WP_011970797.1\|1086068_1087014_+\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_013845761.1\|1087434_1088076_-	hypothetical protein	NA	NA	NA	NA
WP_013845762.1\|1088319_1088775_-\|transposase	transposase	NA	NA	NA	NA
WP_013845763.1\|1089133_1090606_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013845764.1\|1090687_1091767_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-30	39.3
WP_013845765.1\|1091763_1092564_-	ABC transporter permease	NA	NA	NA	NA
WP_003536935.1\|1092565_1093441_-	ABC transporter permease	NA	NA	NA	NA
WP_003536938.1\|1093533_1094544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003536940.1\|1094581_1094908_-	NIPSNAP family protein	NA	NA	NA	NA
WP_003536942.1\|1094913_1096377_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003536944.1\|1096382_1097423_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_013845766.1\|1097419_1098355_-	flavin reductase family protein	NA	NA	NA	NA
WP_003536948.1\|1098351_1099185_-	alpha/beta fold hydrolase	A0A1D8EVD1	Mycobacterium_phage	3.3e-07	37.4
WP_013845767.1\|1099203_1099806_-	amino acid synthesis family protein	NA	NA	NA	NA
WP_013845768.1\|1100270_1100966_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013845769.1\|1102759_1103593_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_187294080.1\|1103850_1104793_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	2.9e-15	27.2
WP_013845771.1\|1104954_1106289_+\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1122766 : 1254474

Stx2-converting_phage(15.62%)

integrase,protease,transposase

attL 1183809:1183841|attR 1196760:1196775

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013845782.1\|1122766_1124164_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_013845783.1\|1124576_1126094_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.0e-42	31.3
WP_013845260.1\|1126327_1126786_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.5e-06	48.6
WP_013845784.1\|1126766_1127177_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	8.4e-20	46.2
WP_013845785.1\|1127173_1128766_+\|transposase	IS66-like element ISRm2 family transposase	A0A0P0ZBS5	Stx2-converting_phage	9.4e-59	33.1
WP_013845786.1\|1129521_1130259_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	8.2e-58	47.5
WP_013845789.1\|1133164_1134097_-	transcriptional regulator NodD2	NA	NA	NA	NA
WP_013845790.1\|1134453_1134633_+	hypothetical protein	NA	NA	NA	NA
WP_013845791.1\|1134812_1135178_+	hypothetical protein	NA	NA	NA	NA
WP_013845793.1\|1138697_1139684_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-59	41.6
WP_013845794.1\|1139999_1140758_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_013845795.1\|1140999_1142265_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_013845796.1\|1143652_1144684_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013845797.1\|1144910_1145198_-	hypothetical protein	NA	NA	NA	NA
WP_187294078.1\|1146330_1146705_+\|transposase	transposase	K4I413	Acidithiobacillus_phage	7.9e-17	38.1
WP_013845799.1\|1148083_1149217_+	KamA family radical SAM protein	NA	NA	NA	NA
WP_013845801.1\|1149659_1150745_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_013845803.1\|1151670_1152669_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_041915247.1\|1153571_1155407_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013845805.1\|1155421_1156492_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	34.8
WP_088203552.1\|1158074_1158837_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	9.4e-25	42.5
WP_013845809.1\|1159324_1160866_-	M81 family metallopeptidase	NA	NA	NA	NA
WP_013845810.1\|1161006_1162041_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	31.5
WP_013845811.1\|1162037_1163045_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-10	24.1
WP_013845812.1\|1163046_1163928_-	ABC transporter permease	NA	NA	NA	NA
WP_013845813.1\|1163929_1164871_-	ABC transporter permease	NA	NA	NA	NA
WP_013845814.1\|1164870_1166484_-	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_013845815.1\|1166713_1167682_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA
WP_013845816.1\|1167705_1168545_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	4.7e-25	37.4
WP_013845817.1\|1168582_1170160_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.3e-23	23.9
WP_013845818.1\|1170167_1170941_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_013845819.1\|1171470_1172313_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013845820.1\|1172674_1174315_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_013845821.1\|1174328_1176389_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_013845822.1\|1176699_1177803_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_143058476.1\|1177846_1178890_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_013845824.1\|1178979_1180083_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013845825.1\|1180169_1182005_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013845826.1\|1182019_1183090_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-30	34.8
1183282:1183297	attL	NA	NA	NA	NA
WP_074935265.1\|1183456_1183756_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
1183809:1183841	attL	NA	NA	NA	NA
WP_011970372.1\|1184593_1185157_-	UPF0149 family protein	NA	NA	NA	NA
WP_013845336.1\|1185153_1186728_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-75	35.9
WP_013845337.1\|1186776_1187133_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_013845338.1\|1187129_1187600_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_013845829.1\|1188340_1189255_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013845830.1\|1189251_1190238_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	2.7e-08	29.3
WP_013845831.1\|1190455_1191334_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.6e-30	31.3
1190303:1190335	attR	NA	NA	NA	NA
WP_013845832.1\|1191341_1192538_+\|transposase	IS91 family transposase	NA	NA	NA	NA
1190303:1190335	attR	NA	NA	NA	NA
WP_074935288.1\|1192920_1193202_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.4e-20	59.3
WP_013845833.1\|1193869_1194040_+	hypothetical protein	NA	NA	NA	NA
WP_013845260.1\|1194071_1194530_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.5e-06	48.6
WP_013845259.1\|1194510_1194864_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.2e-20	46.2
WP_086018112.1\|1196583_1196799_+	hypothetical protein	NA	NA	NA	NA
WP_013845834.1\|1197070_1197376_-	hypothetical protein	NA	NA	NA	NA
WP_013845835.1\|1199505_1200768_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_013845836.1\|1200973_1201699_-	Asp/Glu/hydantoin racemase	NA	NA	NA	NA
WP_013845794.1\|1203696_1204455_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_013845838.1\|1204696_1205962_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_041915251.1\|1206262_1207351_-	uridylate kinase	NA	NA	NA	NA
WP_013845796.1\|1207347_1208379_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013845840.1\|1208605_1208749_-	hypothetical protein	NA	NA	NA	NA
WP_164841911.1\|1210666_1210756_+	hypothetical protein	NA	NA	NA	NA
WP_086018113.1\|1210752_1210968_+	hypothetical protein	NA	NA	NA	NA
WP_041915252.1\|1213040_1213238_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003537331.1\|1213230_1214109_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_177188751.1\|1214714_1215365_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2K9L0G1	Tupanvirus	4.9e-22	35.0
WP_013845846.1\|1215521_1216529_+	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_013845847.1\|1217719_1218571_+	pyridoxal kinase	NA	NA	NA	NA
WP_013845848.1\|1218870_1219215_-	hypothetical protein	NA	NA	NA	NA
WP_013845849.1\|1220421_1221114_-	flavin reductase family protein	NA	NA	NA	NA
WP_013845850.1\|1221415_1222477_-	stachydrine N-demethylase reductase subunit Stc4	NA	NA	NA	NA
WP_013845851.1\|1222481_1223720_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_013845852.1\|1223867_1224746_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.0e-22	27.9
WP_013845853.1\|1226161_1226887_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013845855.1\|1227698_1228148_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.5e-17	47.5
WP_003535591.1\|1228459_1228777_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_080564460.1\|1228773_1229058_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_107592309.1\|1229117_1229591_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_013845857.1\|1231677_1232271_-	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	1.9e-09	35.3
WP_003535606.1\|1232752_1232956_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_003535607.1\|1233609_1234131_+	hypothetical protein	NA	NA	NA	NA
WP_015061302.1\|1234188_1234398_-	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	1.5e-25	84.8
WP_003535613.1\|1236868_1237312_+	helix-turn-helix transcriptional regulator	A0A1V0EEW3	Caulobacter_phage	2.7e-08	51.7
WP_013845858.1\|1238453_1238900_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	7.9e-32	54.2
WP_003535617.1\|1238938_1239184_+	hypothetical protein	NA	NA	NA	NA
WP_003535620.1\|1239966_1240116_-	hypothetical protein	NA	NA	NA	NA
WP_003535637.1\|1241762_1242014_+	acyl carrier protein	NA	NA	NA	NA
WP_010968824.1\|1243187_1243484_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_013845862.1\|1243560_1245198_+	chaperonin GroEL	A0A219YK78	uncultured_virus	6.7e-177	63.3
WP_013845863.1\|1246596_1247949_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	2.3e-58	50.8
WP_003537730.1\|1248476_1248911_+	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_013845864.1\|1253168_1253918_+	carbonic anhydrase	NA	NA	NA	NA
WP_162145869.1\|1254003_1254474_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_015597

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7215 : 176145

113

Mycobacterium_phage(15.38%)

integrase,transposase

attL 57530:57564|attR 126232:126266

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041915310.1\|7215_7821_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_074935232.1\|10527_10815_+	hypothetical protein	NA	NA	NA	NA
WP_013851010.1\|11290_12589_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.1e-77	42.1
WP_041915311.1\|13286_13928_+	hypothetical protein	NA	NA	NA	NA
WP_013851012.1\|14620_15043_+	hypothetical protein	NA	NA	NA	NA
WP_177188747.1\|15257_15422_+	hypothetical protein	NA	NA	NA	NA
WP_080564471.1\|15488_15593_-	hypothetical protein	NA	NA	NA	NA
WP_041915346.1\|16133_17372_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013851014.1\|17807_19151_+	diaminopimelate decarboxylase	M1I0U0	Paramecium_bursaria_Chlorella_virus	4.7e-19	26.3
WP_013851015.1\|19165_20053_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_013851016.1\|20678_21653_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA
WP_177188750.1\|21960_22098_-	hypothetical protein	NA	NA	NA	NA
WP_013851017.1\|23499_25560_-	recombinase family protein	A0A0H3UZF2	Geobacillus_virus	7.0e-06	20.7
WP_086018100.1\|26470_26734_-	Y4bD/Y4pK family protein	NA	NA	NA	NA
WP_013851018.1\|27573_28311_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.1e-57	47.5
WP_013851019.1\|30243_32979_+	insulinase family protein	A0A2K9LA15	Tupanvirus	1.7e-15	29.4
WP_013851020.1\|34851_35442_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.5e-35	48.7
WP_013851021.1\|38897_39890_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_013851022.1\|41574_42453_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA
WP_041915315.1\|42460_43135_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA
WP_013851024.1\|43124_43778_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA
WP_074935185.1\|43928_44678_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-32	39.2
WP_013851026.1\|45112_46384_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.3e-76	42.3
WP_074935182.1\|46448_47993_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013851028.1\|48042_49467_+	C69 family dipeptidase	NA	NA	NA	NA
WP_013851029.1\|49522_50491_+	ABC transporter permease	NA	NA	NA	NA
WP_013851030.1\|50487_51372_+	ABC transporter permease	NA	NA	NA	NA
WP_074935181.1\|51376_52981_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.6e-19	28.3
WP_013851032.1\|54717_55824_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	NA	NA	NA
WP_013851033.1\|56183_56885_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	7.3e-16	32.1
57530:57564	attL	NA	NA	NA	NA
WP_074935213.1\|58353_58842_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	9.3e-10	66.7
WP_143058438.1\|61293_61950_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_074935214.1\|64944_65328_+\|transposase	transposase	NA	NA	NA	NA
WP_013845604.1\|65324_65672_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.8e-32	55.1
WP_148267207.1\|66613_67057_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.0e-07	40.2
WP_013851039.1\|68177_69890_-	peptidase M14	NA	NA	NA	NA
WP_041915320.1\|69978_70842_-	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_013851041.1\|70928_72638_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013851042.1\|72634_74233_-	5-oxoprolinase/urea amidolyase family protein	NA	NA	NA	NA
WP_013851043.1\|74225_74990_-	LamB/YcsF family protein	NA	NA	NA	NA
WP_041915354.1\|75479_76490_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_013851046.1\|76566_77670_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013851047.1\|78013_78388_+\|transposase	transposase	NA	NA	NA	NA
WP_013845831.1\|82052_82931_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.6e-30	31.3
WP_013845832.1\|82938_84135_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_013851049.1\|85629_86844_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013851050.1\|86847_87324_-	RidA family protein	NA	NA	NA	NA
WP_013851051.1\|87320_88049_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_013851052.1\|88057_89212_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_013851053.1\|89315_90161_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013851054.1\|90174_90933_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.3e-30	39.3
WP_050812816.1\|90944_91568_-	ABC transporter permease	G3M9Y4	Bacillus_virus	2.0e-20	30.2
WP_013845863.1\|92074_93427_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	2.3e-58	50.8
WP_013851055.1\|93698_94589_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013851056.1\|94566_95301_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	7.0e-09	27.9
WP_013851057.1\|95486_96320_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013851058.1\|96536_96986_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	8.0e-08	40.4
WP_013851059.1\|96966_97320_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.9e-20	47.3
WP_041915356.1\|97374_98967_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.7e-58	31.8
WP_041915325.1\|99218_100625_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_041915357.1\|100925_101312_-	ectoine synthase	NA	NA	NA	NA
WP_041915358.1\|101632_102871_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013851065.1\|104361_105147_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_041915357.1\|106995_107382_-	ectoine synthase	NA	NA	NA	NA
WP_041915358.1\|107702_108941_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013851057.1\|110438_111272_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013851067.1\|112167_112455_+	hypothetical protein	NA	NA	NA	NA
WP_013851068.1\|112682_113714_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013851071.1\|115453_116782_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013851072.1\|116778_121461_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_013851074.1\|123712_124210_+	thermonuclease family protein	NA	NA	NA	NA
WP_013851075.1\|124603_124936_+	DUF736 family protein	NA	NA	NA	NA
WP_013851076.1\|124917_125175_+	hypothetical protein	NA	NA	NA	NA
WP_013843899.1\|126747_127560_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.6e-28	35.7
126232:126266	attR	NA	NA	NA	NA
WP_013843900.1\|127556_129065_-\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_050812823.1\|129287_129815_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.8e-14	31.8
WP_013851079.1\|130283_131390_-	pyridoxal phosphate-dependent aminotransferase family protein	NA	NA	NA	NA
WP_013844528.1\|131673_132507_-\|transposase	IS5-like element ISRm4-3 family transposase	A0A0M5M147	Mycobacterium_phage	1.6e-09	26.8
WP_013851057.1\|132610_133444_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_080564475.1\|134190_134667_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	6.7e-05	30.0
WP_013851080.1\|135289_136726_-	amidase	NA	NA	NA	NA
WP_013851081.1\|136712_137714_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.1e-20	34.0
WP_013851082.1\|137710_138700_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	8.8e-07	31.8
WP_013851083.1\|138696_139569_-	ABC transporter permease	NA	NA	NA	NA
WP_041915330.1\|139580_140597_-	ABC transporter permease	NA	NA	NA	NA
WP_143058449.1\|140637_142014_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013845863.1\|142597_143950_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	2.3e-58	50.8
WP_050812818.1\|145104_145374_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_074935274.1\|145315_145720_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_143058471.1\|145768_145966_+	hypothetical protein	NA	NA	NA	NA
WP_013844870.1\|145954_147307_-\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	2.3e-58	50.8
WP_013851086.1\|148128_148422_-	hypothetical protein	NA	NA	NA	NA
WP_013845851.1\|149411_150650_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_013851087.1\|150797_151676_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.8e-20	26.9
WP_010967387.1\|152266_152716_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	8.6e-18	47.5
WP_074935289.1\|153085_153247_-	hypothetical protein	NA	NA	NA	NA
WP_010968824.1\|153801_154098_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_013851090.1\|157477_157906_+	hypothetical protein	NA	NA	NA	NA
WP_003535606.1\|158006_158210_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_107592306.1\|158756_159125_-	DUF4055 domain-containing protein	A0A0A0RTF5	Escherichia_phage	5.0e-08	33.9
WP_010967378.1\|159275_159623_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	2.1e-11	61.8
WP_013851091.1\|159661_159907_+	hypothetical protein	NA	NA	NA	NA
WP_041915334.1\|160581_160974_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013851092.1\|162625_163102_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013851094.1\|163659_164007_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.0e-23	41.6
WP_013851095.1\|164024_164336_+	hypothetical protein	NA	NA	NA	NA
WP_017268949.1\|165580_166477_+	aldo/keto reductase	NA	NA	NA	NA
WP_013843899.1\|167154_167967_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.6e-28	35.7
WP_013851098.1\|170098_170974_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013851099.1\|171096_171837_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	6.1e-13	28.5
WP_013851101.1\|174333_174693_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003526806.1\|174682_175006_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013851102.1\|175143_176145_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	6.5e-42	34.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_015590

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CRISPR-Cas detection and classification

Crispr_ID: NC_015590_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015590_1

780002-780115

Orphan

Consensus_repeat	Method
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015590_1

>merge|NC_015590|1|780002-780115|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAAGGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

>NC_015590|1|1|780002-780115|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	GGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTC
CGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015590.1\|WP_003527345.1\|775331_775487_-\|hypothetical-protein	unknown	unknown	unknown
NC_015590.1\|WP_010969005.1\|786832_787852_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_015590.1\|WP_013844148.1\|783870_784272_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_015590.1\|WP_003527334.1\|781779_782667_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_015590.1\|WP_010969004.1\|785352_786840_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_015590.1\|WP_013844147.1\|782756_783770_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NC_015590.1\|WP_010968998.1\|776772_778062_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_015590.1\|WP_013844144.1\|769751_772406_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_015590.1\|WP_003527320.1\|790514_790835_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NC_015590.1\|WP_010968999.1\|778331_779996_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NC_015590.1\|WP_003527321.1\|788932_790435_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NC_015590.1\|WP_010969003.1\|784410_785337_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_015590.1\|WP_003527344.1\|775524_775701_-\|hypothetical-protein	unknown	unknown	unknown
NC_015590.1\|WP_013844149.1\|787947_788904_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_015590.1\|WP_013844142.1\|764099_767060_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NC_015590.1\|WP_013844146.1\|775839_776700_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_015590.1\|WP_013844143.1\|767070_769398_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_015590.1\|WP_010968992.1\|762667_764065_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_015590.1\|WP_010969000.1\|780560_781559_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NC_015590.1\|WP_010968996.1\|772831_773770_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NC_015590.1\|WP_010969005.1\|786832_787852_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NC_015590.1\|WP_010969004.1\|785352_786840_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52
NC_015590.1\|WP_013844147.1\|782756_783770_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NC_015590.1\|WP_010968998.1\|776772_778062_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_015590.1\|WP_003527334.1\|781779_782667_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NC_015590.1\|WP_003527320.1\|790514_790835_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NC_015590.1\|WP_010968992.1\|762667_764065_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.58696e-52
NC_015590.1\|WP_010968999.1\|778331_779996_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.40481e-104
NC_015590.1\|WP_003527321.1\|788932_790435_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NC_015590.1\|WP_010969003.1\|784410_785337_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NC_015590.1\|WP_013844148.1\|783870_784272_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.28189e-41
NC_015590.1\|WP_013844149.1\|787947_788904_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	2.61296e-08
NC_015590.1\|WP_013844142.1\|764099_767060_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NC_015590.1\|WP_013844146.1\|775839_776700_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	3.78658e-63
NC_015590.1\|WP_013844143.1\|767070_769398_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.74445e-54
NC_015590.1\|WP_013844144.1\|769751_772406_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_015590.1\|WP_010969000.1\|780560_781559_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NC_015590.1\|WP_010968996.1\|772831_773770_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16

>NC_015590.1|WP_010968999.1|778331_779996_+|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MTEQQELPERESMEFDVVIVGAGPAGLAAAIRLKQVSPELSVVVLEKGAEVGAHILSGAVVDPIGIDRLLPGWRDEPDHPFKTEVTDDQFLFLGPAGSVRLPNFLMPPLMNNHGNYVVSLGNVCRWLATQAEALGVEIYPGFAATEVLYNDEGAVIGVATGDMGIERNGEPGPNFARGMELLGKYTLIGEGVRGSLAKQLIAKYKLDAGCDVPKFGIGLKELWEVKPENHKPGLVQHSFGWPLGMKTGGGSFLYHLEDNLVAVGFVVHLNYKNPYLYPFEEFQRFKTHPAIRGTFEGGKRLSYGARAITEGGYQSVPKLSFPGGALIGCSAGFVNVPRIKGSHNAVLSGILAAEKLAAAIADGRANDEPIEIERGWRESAIGQDLKRVRNVKPLWSKFGTAVGVALGGLDMWTNQLFGFSFFGTLKHGKTDAQSLEPAAKHERIDYPKPDGVLTFDRLSSVFLSNTNHEEDQPVHLQVKDWDLQKRSEYEVYAGPSSRYCPAGVYEWVEKDGQQTFVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYPNM
>NC_015590.1|WP_010968998.1|776772_778062_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NC_015590.1|WP_013844146.1|775839_776700_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAAPGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NC_015590.1|WP_003527344.1|775524_775701_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NC_015590.1|WP_003527345.1|775331_775487_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NC_015590.1|WP_010968996.1|772831_773770_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NC_015590.1|WP_013844144.1|769751_772406_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTASGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NC_015590.1|WP_013844143.1|767070_769398_-|PAS-domain-containing-protein
MDKMADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NC_015590.1|WP_013844142.1|764099_767060_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDNSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGVRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NC_015590.1|WP_010968992.1|762667_764065_+|HAMP-domain-containing-histidine-kinase
MSRISVLFRTTAVRLSALYLVLFSLCAAFLVFYVTGMSERLLQQQTRDSIAAEVTQIADVYDRAGINGLLRSLERRARQPGANLYVIAGPNGEILAGNVAALQPGLLDDEGWKSEPFRYRRFTDESRAERHVALAQVLVLDNGLRILVGRDLQEPEKFRVLVRQALMVALGIMGLGALVIWFGIGRNALRRIDRMSEASTKIMAGDLSQRLPTSGSGDEFDRLSESLNAMLERIEKLNEGLKQVSDNIAHDLKTPLTRLRNKAEAALADTEGSNQSGALEQIIAESDQLIRTFNALLMISRVEAGSAVAEMSEVDLARIVADCVELYEPLAEDKEMRIEAEAAPGVAISGNRELISQALGNLIDNAIKYAEGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESRSKPGTGLGLSLVDAVMEMHRGSLELSATEEDGRGLAVRMVFPAVAT
>NC_015590.1|WP_010969000.1|780560_781559_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NC_015590.1|WP_003527334.1|781779_782667_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NC_015590.1|WP_013844147.1|782756_783770_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSSAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NC_015590.1|WP_013844148.1|783870_784272_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLLRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKRA
>NC_015590.1|WP_010969003.1|784410_785337_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NC_015590.1|WP_010969004.1|785352_786840_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NC_015590.1|WP_010969005.1|786832_787852_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NC_015590.1|WP_013844149.1|787947_788904_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGSVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NC_015590.1|WP_003527321.1|788932_790435_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NC_015590.1|WP_003527320.1|790514_790835_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NC_015590_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015590_2

1773926-1774038

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015590_2

>merge|NC_015590|2|1773926-1774038|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NC_015590|2|2|1773926-1774038|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015590.1\|WP_010969508.1\|1764601_1765285_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NC_015590.1\|WP_013844512.1\|1783667_1785563_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NC_015590.1\|WP_010969512.1\|1769099_1769927_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_015590.1\|WP_010969518.1\|1777649_1778045_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_015590.1\|WP_003534108.1\|1761744_1762482_+\|autoinducer-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|99777
NC_015590.1\|WP_013844510.1\|1774850_1776584_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NC_015590.1\|WP_003534106.1\|1762638_1763283_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NC_015590.1\|WP_013844511.1\|1776689_1777628_+\|hypothetical-protein	unknown	unknown	unknown
NC_015590.1\|WP_003534093.1\|1771880_1773800_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_015590.1\|WP_003535074.1\|1781382_1781925_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_015590.1\|WP_013844507.1\|1763450_1764578_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NC_015590.1\|WP_010969520.1\|1782951_1783635_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NC_015590.1\|WP_010969509.1\|1765582_1766404_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NC_015590.1\|WP_003535076.1\|1782036_1782732_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_015590.1\|WP_010969515.1\|1774426_1774849_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NC_015590.1\|WP_010969519.1\|1779786_1781178_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NC_015590.1\|WP_013844509.1\|1769929_1771612_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_015590.1\|WP_010969510.1\|1766775_1767969_-\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|227609
NC_015590.1\|WP_003535070.1\|1778180_1779554_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NC_015590.1\|WP_013844508.1\|1768066_1769089_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530

Protein	Function_ID	Function_description	E-value
NC_015590.1\|WP_010969508.1\|1764601_1765285_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NC_015590.1\|WP_013844512.1\|1783667_1785563_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_015590.1\|WP_010969512.1\|1769099_1769927_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NC_015590.1\|WP_010969518.1\|1777649_1778045_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NC_015590.1\|WP_003534108.1\|1761744_1762482_+\|autoinducer-binding-domain-containing-protein	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NC_015590.1\|WP_013844510.1\|1774850_1776584_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NC_015590.1\|WP_003534106.1\|1762638_1763283_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NC_015590.1\|WP_003534093.1\|1771880_1773800_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NC_015590.1\|WP_003535074.1\|1781382_1781925_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NC_015590.1\|WP_013844507.1\|1763450_1764578_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.21353e-30
NC_015590.1\|WP_010969520.1\|1782951_1783635_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NC_015590.1\|WP_010969509.1\|1765582_1766404_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NC_015590.1\|WP_003535076.1\|1782036_1782732_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NC_015590.1\|WP_010969515.1\|1774426_1774849_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NC_015590.1\|WP_010969519.1\|1779786_1781178_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NC_015590.1\|WP_013844509.1\|1769929_1771612_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_015590.1\|WP_010969510.1\|1766775_1767969_-\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NC_015590.1\|WP_003535070.1\|1778180_1779554_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NC_015590.1\|WP_013844508.1\|1768066_1769089_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88

>NC_015590.1|WP_003534093.1|1771880_1773800_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NC_015590.1|WP_013844509.1|1769929_1771612_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYNIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NC_015590.1|WP_010969512.1|1769099_1769927_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NC_015590.1|WP_013844508.1|1768066_1769089_+|LacI-family-DNA-binding-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NC_015590.1|WP_010969510.1|1766775_1767969_-|phytanoyl-CoA-dioxygenase-family-protein
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NC_015590.1|WP_010969509.1|1765582_1766404_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NC_015590.1|WP_010969508.1|1764601_1765285_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NC_015590.1|WP_013844507.1|1763450_1764578_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEANLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NC_015590.1|WP_003534106.1|1762638_1763283_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NC_015590.1|WP_003534108.1|1761744_1762482_+|autoinducer-binding-domain-containing-protein
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NC_015590.1|WP_010969515.1|1774426_1774849_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NC_015590.1|WP_013844510.1|1774850_1776584_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NC_015590.1|WP_013844511.1|1776689_1777628_+|hypothetical-protein
MPPAQEWGHAQQMQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NC_015590.1|WP_010969518.1|1777649_1778045_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NC_015590.1|WP_003535070.1|1778180_1779554_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NC_015590.1|WP_010969519.1|1779786_1781178_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NC_015590.1|WP_003535074.1|1781382_1781925_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NC_015590.1|WP_003535076.1|1782036_1782732_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NC_015590.1|WP_010969520.1|1782951_1783635_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NC_015590.1|WP_013844512.1|1783667_1785563_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVAYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

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Crispr_ID: NC_015590_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015590_3

3597676-3597822

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015590_3

>merge|NC_015590|3|3597676-3597822|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NC_015590|3|3|3597676-3597822|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015590.1\|WP_010968386.1\|3591357_3592341_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_015590.1\|WP_013844977.1\|3588811_3590281_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NC_015590.1\|WP_003531958.1\|3601592_3602675_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NC_015590.1\|WP_010968389.1\|3596761_3597616_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NC_015590.1\|WP_010968383.1\|3587463_3588750_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298
NC_015590.1\|WP_013844979.1\|3594929_3596321_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NC_015590.1\|WP_010968387.1\|3593989_3594799_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NC_015590.1\|WP_003537933.1\|3592569_3593733_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_015590.1\|WP_013844976.1\|3586760_3587441_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NC_015590.1\|WP_013844978.1\|3590339_3591350_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_015590.1\|WP_013844980.1\|3606636_3607656_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_015590.1\|WP_010968394.1\|3607764_3609570_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_015590.1\|WP_003531959.1\|3600459_3601593_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NC_015590.1\|WP_003531955.1\|3606194_3606575_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NC_015590.1\|WP_010968391.1\|3598822_3600451_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NC_015590.1\|WP_010968392.1\|3605006_3606074_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NC_015590.1\|WP_010968390.1\|3597852_3598812_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NC_015590.1\|WP_010968395.1\|3609587_3610406_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_015590.1\|WP_003537743.1\|3596408_3596753_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_015590.1\|WP_003531957.1\|3602855_3604715_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862

Protein	Function_ID	Function_description	E-value
NC_015590.1\|WP_010968386.1\|3591357_3592341_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NC_015590.1\|WP_013844977.1\|3588811_3590281_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NC_015590.1\|WP_003531958.1\|3601592_3602675_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_015590.1\|WP_010968389.1\|3596761_3597616_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NC_015590.1\|WP_010968383.1\|3587463_3588750_+\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120
NC_015590.1\|WP_013844979.1\|3594929_3596321_+\|leucyl-aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NC_015590.1\|WP_010968387.1\|3593989_3594799_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NC_015590.1\|WP_003537933.1\|3592569_3593733_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NC_015590.1\|WP_013844976.1\|3586760_3587441_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	1.66116e-111
NC_015590.1\|WP_013844978.1\|3590339_3591350_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.53957e-114
NC_015590.1\|WP_013844980.1\|3606636_3607656_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NC_015590.1\|WP_010968394.1\|3607764_3609570_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_015590.1\|WP_003531959.1\|3600459_3601593_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_015590.1\|WP_003531955.1\|3606194_3606575_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NC_015590.1\|WP_010968391.1\|3598822_3600451_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NC_015590.1\|WP_010968392.1\|3605006_3606074_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NC_015590.1\|WP_010968390.1\|3597852_3598812_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NC_015590.1\|WP_010968395.1\|3609587_3610406_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NC_015590.1\|WP_003537743.1\|3596408_3596753_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NC_015590.1\|WP_003531957.1\|3602855_3604715_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

>NC_015590.1|WP_010968389.1|3596761_3597616_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NC_015590.1|WP_003537743.1|3596408_3596753_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NC_015590.1|WP_013844979.1|3594929_3596321_+|leucyl-aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDAPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NC_015590.1|WP_010968387.1|3593989_3594799_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NC_015590.1|WP_003537933.1|3592569_3593733_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NC_015590.1|WP_010968386.1|3591357_3592341_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NC_015590.1|WP_013844978.1|3590339_3591350_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NC_015590.1|WP_013844977.1|3588811_3590281_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MFGKRGNEGPGKGGARGFSPAPPMPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NC_015590.1|WP_010968383.1|3587463_3588750_+|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NC_015590.1|WP_013844976.1|3586760_3587441_+|pilus-assembly-protein-CpaD
MALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLVNRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NC_015590.1|WP_010968390.1|3597852_3598812_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NC_015590.1|WP_010968391.1|3598822_3600451_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NC_015590.1|WP_003531959.1|3600459_3601593_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NC_015590.1|WP_003531958.1|3601592_3602675_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NC_015590.1|WP_003531957.1|3602855_3604715_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NC_015590.1|WP_010968392.1|3605006_3606074_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NC_015590.1|WP_003531955.1|3606194_3606575_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NC_015590.1|WP_013844980.1|3606636_3607656_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NC_015590.1|WP_010968394.1|3607764_3609570_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NC_015590.1|WP_010968395.1|3609587_3610406_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	7231-7268	4	0.895
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	250765-250802	5	0.868
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1691497-1691534	6	0.842
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	126743-126780	6	0.842
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	188971-189008	6	0.842
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	99915-99952	8	0.789
NC_015590_1	1.1\|780040\|38\|NC_015590\|CRISPRCasFinder	780040-780077	38	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	155054-155091	9	0.763

1. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 4, identity: 0.895

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgaatttt	Protospacer
** ******** *********************** *.

2. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 5, identity: 0.868

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtgatcatc	Protospacer
** ***********************.****** ..**

3. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgacgtcc	Protospacer
** ******** *********************   .*

4. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgagttcg	Protospacer
** ******** *********************.* .

5. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtaaccgac	Protospacer
** ***********************.****.* .* *

6. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 8, identity: 0.789

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
gggggcgaaggcccggtctatccgaacatgtagcccga	Protospacer
*********** *******************.. .

7. spacer 1.1|780040|38|NC_015590|CRISPRCasFinder matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 9, identity: 0.763

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaggggccggtctatccgaacatgtagggcag	Protospacer
** *****.**********************...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

263051 : 303155

Sinorhizobium_phage(71.79%)

portal,tail,integrase,capsid,terminase,head

attL 262448:262462|attR 279786:279800

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
262448:262462	attL	NA	NA	NA	NA
WP_010968684.1\|263051_264299_+	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	6.3e-18	31.2
WP_013843960.1\|264478_265636_-\|integrase	tyrosine-type recombinase/integrase	A0A067XRF8	Caulobacter_phage	2.1e-07	29.1
WP_013843961.1\|265814_266183_-	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	1.3e-56	82.1
WP_013843962.1\|266179_266683_-	hypothetical protein	A0A218M329	Acidovorax_phage	6.0e-12	34.5
WP_013843963.1\|266692_267811_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	1.9e-66	37.8
WP_013843964.1\|267803_268169_-	hypothetical protein	NA	NA	NA	NA
WP_013843965.1\|268168_268588_-	DUF2312 domain-containing protein	Q8W6H2	Sinorhizobium_phage	9.4e-35	66.7
WP_013843966.1\|268599_269094_-	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.7e-43	57.3
WP_013843967.1\|269097_269778_-	hypothetical protein	R9TQJ1	Rhizobium_phage	4.1e-40	46.3
WP_013843969.1\|269982_270219_-	hypothetical protein	NA	NA	NA	NA
WP_013843971.1\|270626_271322_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013843972.1\|271404_271614_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_017267134.1\|271958_272210_+	hypothetical protein	NA	NA	NA	NA
WP_017267133.1\|272311_272485_+	hypothetical protein	NA	NA	NA	NA
WP_013843974.1\|272481_272661_+	hypothetical protein	NA	NA	NA	NA
WP_041915042.1\|272657_272927_+	hypothetical protein	R9TRS8	Rhizobium_phage	1.8e-07	76.3
WP_013843975.1\|272923_273295_+	hypothetical protein	NA	NA	NA	NA
WP_013843976.1\|273308_273821_+	hypothetical protein	NA	NA	NA	NA
WP_013843977.1\|273820_274156_+	hypothetical protein	NA	NA	NA	NA
WP_013843978.1\|274152_275382_+	zinc-binding protein	R9TNC4	Rhizobium_phage	4.5e-101	49.2
WP_013843979.1\|275383_277192_+	DNA primase family protein	A0A0P0IX98	Lactobacillus_phage	5.3e-50	37.6
WP_013843980.1\|277469_278264_+	hypothetical protein	R9TRT9	Rhizobium_phage	5.0e-53	45.2
WP_013843981.1\|278431_279178_+	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	9.6e-115	83.9
WP_013843982.1\|279327_279969_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	3.6e-54	58.9
279786:279800	attR	NA	NA	NA	NA
WP_013843983.1\|279965_282008_+\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	0.0e+00	89.5
WP_013843984.1\|282018_282255_+\|head,tail	head-to-tail joining protein	A0A291AUL5	Sinorhizobium_phage	4.9e-25	76.9
WP_013843985.1\|282251_283976_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	5.7e-288	83.7
WP_013843986.1\|283972_284878_+	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	4.8e-145	86.1
WP_013843987.1\|284903_285446_+	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	1.8e-38	78.0
WP_013843988.1\|285448_285805_+\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	7.7e-46	83.1
WP_013843989.1\|285832_286864_+\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	1.6e-176	86.2
WP_013843990.1\|286938_287343_+	hypothetical protein	A0A291AUM1	Sinorhizobium_phage	2.7e-15	60.6
WP_013843991.1\|287339_287666_+	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	3.6e-34	70.8
WP_013843992.1\|287668_287965_+	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	4.6e-28	64.9
WP_013843993.1\|287966_288431_+	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	1.6e-51	67.5
WP_011975792.1\|288523_288934_+\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_013843994.1\|288946_289348_+	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	1.3e-49	77.7
WP_041915043.1\|289395_289587_+	hypothetical protein	A0A291AUN4	Sinorhizobium_phage	1.5e-19	74.2
WP_013843995.1\|289587_289767_-	hypothetical protein	NA	NA	NA	NA
WP_013843996.1\|289869_291741_+\|tail	tail tape measure protein TP901 core region	A0A291AUM6	Sinorhizobium_phage	6.2e-179	58.3
WP_013843997.1\|291740_292391_+	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	8.7e-80	70.5
WP_013843998.1\|292387_292978_+	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	9.1e-76	72.1
WP_013843999.1\|293124_293397_-	hypothetical protein	NA	NA	NA	NA
WP_013844000.1\|293468_293873_+	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	3.8e-49	73.1
WP_013844001.1\|293879_296537_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	1.4e-261	64.0
WP_013844002.1\|296536_298051_+	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	4.9e-267	88.6
WP_013844003.1\|298062_299163_+	hypothetical protein	A0A291AUN5	Sinorhizobium_phage	3.3e-31	55.8
WP_013844004.1\|299162_299510_+	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.3e-21	48.2
WP_013844005.1\|299496_299832_+	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	2.6e-27	71.9
WP_041915044.1\|300130_300322_-	hypothetical protein	NA	NA	NA	NA
WP_080564424.1\|300500_300719_-	hypothetical protein	NA	NA	NA	NA
WP_041915046.1\|300912_301881_+	chitinase	A0A076G6J8	Sinorhizobium_phage	2.0e-165	88.5
WP_050812782.1\|301880_302111_+	hypothetical protein	NA	NA	NA	NA
WP_013844009.1\|302789_303155_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	4.8e-43	73.3

DBSCAN-SWA_2

797658 : 848945

Sinorhizobium_phage(60.0%)

transposase,terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844155.1\|797658_798015_-	HNH endonuclease	A0A0U2C107	Paracoccus_phage	1.4e-31	61.5
WP_013844156.1\|798011_798374_-	hypothetical protein	Q8W6F3	Sinorhizobium_phage	2.1e-46	75.8
WP_013844157.1\|798370_799096_-	hypothetical protein	A0A219YFC7	Ochrobactrum_phage	6.2e-34	40.9
WP_013844158.1\|799095_799773_-	hypothetical protein	NA	NA	NA	NA
WP_013844159.1\|799769_800012_-	hypothetical protein	NA	NA	NA	NA
WP_013844160.1\|800008_801025_-	hypothetical protein	Q8W6F2	Sinorhizobium_phage	1.3e-138	69.8
WP_013844161.1\|801021_801240_-	hypothetical protein	A0A076G6F8	Sinorhizobium_phage	2.5e-15	62.0
WP_013844162.1\|801236_801488_-	hypothetical protein	NA	NA	NA	NA
WP_013844163.1\|801484_802006_-	hypothetical protein	A0A0U2C161	Paracoccus_phage	7.1e-16	36.8
WP_013844164.1\|802007_803027_-	phage recombination protein Bet	NA	NA	NA	NA
WP_013844165.1\|803029_803560_-	siphovirus Gp157 family protein	NA	NA	NA	NA
WP_013844166.1\|803561_803798_-	hypothetical protein	A0A076G7C7	Sinorhizobium_phage	1.1e-19	59.0
WP_013844167.1\|803839_804169_-	hypothetical protein	A0A076GCZ5	Sinorhizobium_phage	9.4e-14	46.0
WP_013844168.1\|804184_804586_-	hypothetical protein	NA	NA	NA	NA
WP_041915097.1\|805060_805420_+	hypothetical protein	NA	NA	NA	NA
WP_013844170.1\|805420_806212_-	helix-turn-helix domain-containing protein	A0A291AUK0	Sinorhizobium_phage	1.5e-70	54.3
WP_013844171.1\|806294_806498_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013844172.1\|806503_806752_-	hypothetical protein	NA	NA	NA	NA
WP_013844173.1\|806838_807408_+	HNH endonuclease	A0A076G7D7	Sinorhizobium_phage	1.4e-89	84.0
WP_013844176.1\|808497_808701_+	hypothetical protein	NA	NA	NA	NA
WP_013844177.1\|808974_809412_+	hypothetical protein	NA	NA	NA	NA
WP_013844179.1\|809827_810013_+	hypothetical protein	NA	NA	NA	NA
WP_013844180.1\|810009_810210_+	hypothetical protein	A0A076G6Y4	Sinorhizobium_phage	8.7e-23	76.1
WP_013844181.1\|810206_810587_+	DUF1064 domain-containing protein	A0A0R6PIZ9	Moraxella_phage	3.8e-11	39.4
WP_013844182.1\|810583_811456_+	hypothetical protein	M4QM11	Sulfitobacter_phage	1.5e-13	34.2
WP_013844183.1\|811481_812018_+	hypothetical protein	NA	NA	NA	NA
WP_013844184.1\|812014_812821_+	hypothetical protein	A0A291LAU4	Bordetella_phage	1.7e-32	45.7
WP_013844185.1\|812817_813249_+	GcrA cell cycle regulator	NA	NA	NA	NA
WP_013844186.1\|813245_813866_+	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	2.2e-32	39.3
WP_013844189.1\|814894_815575_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013844190.1\|815675_815951_-	hypothetical protein	NA	NA	NA	NA
WP_013844191.1\|815973_816474_+\|terminase	terminase small subunit	A0A076GD11	Sinorhizobium_phage	3.7e-30	45.0
WP_038439132.1\|816477_817809_+	DNA-packaging protein	Q1WDG8	Streptomyces_phage	5.8e-38	32.8
WP_013844193.1\|817817_819635_+	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	9.4e-172	51.5
WP_013844194.1\|819635_819866_-	hypothetical protein	NA	NA	NA	NA
WP_013844195.1\|819893_821039_+	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	1.9e-77	46.6
WP_013844196.1\|821051_821522_+	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	4.6e-38	60.1
WP_013844197.1\|821547_822525_+	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	1.6e-138	75.2
WP_013844198.1\|822540_822882_+	hypothetical protein	A0A2H4J908	uncultured_Caudovirales_phage	3.9e-07	54.0
WP_013844199.1\|822933_823428_+	hypothetical protein	A0A059VG19	Pseudomonas_phage	1.9e-18	42.8
WP_013844200.1\|823451_823613_-	hypothetical protein	NA	NA	NA	NA
WP_013844201.1\|823693_824056_+	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	4.3e-44	74.2
WP_013844202.1\|824062_824353_-	hypothetical protein	A0A076G7G2	Sinorhizobium_phage	3.2e-26	60.4
WP_013844203.1\|824418_824586_+	hypothetical protein	A0A076GD18	Sinorhizobium_phage	9.5e-15	76.8
WP_013844204.1\|824582_824864_+	hypothetical protein	A0A076G6Z7	Sinorhizobium_phage	5.0e-24	66.7
WP_013844205.1\|824922_825921_+\|head	head morphogenesis protein SPP1 gp7	A0A076G6I6	Sinorhizobium_phage	1.7e-159	86.4
WP_013844206.1\|825920_826403_+	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	1.9e-63	74.4
WP_013844207.1\|826576_827008_+	hypothetical protein	A0A076G7G6	Sinorhizobium_phage	5.6e-67	85.3
WP_013844208.1\|827064_827802_+	hypothetical protein	A0A076GD25	Sinorhizobium_phage	4.4e-112	85.3
WP_013844209.1\|827801_828215_+	hypothetical protein	A0A076G701	Sinorhizobium_phage	1.4e-51	78.4
WP_013844210.1\|828562_831424_+\|tail	phage tail length tape measure family protein	A0A076G7H2	Sinorhizobium_phage	1.2e-176	44.3
WP_013844211.1\|831427_832162_+	hypothetical protein	A0A076GD29	Sinorhizobium_phage	1.2e-101	72.4
WP_013844212.1\|832161_832767_+	hypothetical protein	A0A076G707	Sinorhizobium_phage	1.1e-84	72.4
WP_013844213.1\|832769_833189_+	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	1.2e-37	53.3
WP_013844214.1\|833185_835786_+	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	5.9e-236	60.5
WP_013844215.1\|835838_837581_+	G-D-S-L family lipolytic protein	NA	NA	NA	NA
WP_013844216.1\|837622_837901_-	hypothetical protein	NA	NA	NA	NA
WP_013844217.1\|837987_838374_+	hypothetical protein	NA	NA	NA	NA
WP_013844218.1\|838370_839108_-	class I SAM-dependent methyltransferase	F5B3W0	Synechococcus_phage	3.1e-09	35.0
WP_013844219.1\|839235_839622_+	hypothetical protein	NA	NA	NA	NA
WP_013844220.1\|840146_840938_+	HNH endonuclease	NA	NA	NA	NA
WP_013844221.1\|841025_841355_-	hypothetical protein	A0A291AUP2	Sinorhizobium_phage	9.0e-25	59.2
WP_177188723.1\|841608_841872_-	hypothetical protein	NA	NA	NA	NA
WP_013844222.1\|842047_843016_+	chitinase	A0A076G6J8	Sinorhizobium_phage	1.8e-166	87.7
WP_041915059.1\|843136_843379_+	hypothetical protein	J7F8X5	Agrobacterium_phage	1.3e-17	63.2
WP_013844224.1\|843434_843800_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	9.6e-44	73.3
WP_013844225.1\|844249_844399_+	hypothetical protein	NA	NA	NA	NA
WP_013844226.1\|844535_845738_-\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_080564414.1\|845928_847116_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_010969010.1\|848326_848635_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.9e-08	45.6
WP_010969011.1\|848648_848945_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	6.7e-19	49.0

DBSCAN-SWA_3

1316211 : 1402523

uncultured_Mediterranean_phage(26.47%)

portal,tRNA,tail,integrase,protease,capsid,terminase,head

attL 1371479:1371495|attR 1379388:1379404

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003534980.1\|1316211_1317336_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_013844323.1\|1317584_1319915_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_003534977.1\|1319959_1321024_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_010969260.1\|1321016_1321481_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_162098024.1\|1321477_1322296_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_003537361.1\|1322295_1323183_+	LpxI family protein	NA	NA	NA	NA
WP_003537362.1\|1323179_1324349_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_013844324.1\|1324679_1325969_-	citrate (Si)-synthase	NA	NA	NA	NA
WP_013844325.1\|1326274_1328680_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_013844326.1\|1328901_1329888_+	tonB-system energizer ExbB	NA	NA	NA	NA
WP_003534530.1\|1329894_1330320_+	TonB system transport protein ExbD	NA	NA	NA	NA
WP_003534532.1\|1331202_1331862_+	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
WP_013844327.1\|1332138_1333509_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_003534535.1\|1333734_1334490_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_013844328.1\|1334804_1337648_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	7.1e-134	36.7
WP_013844329.1\|1338118_1339408_+	transporter	NA	NA	NA	NA
WP_003534542.1\|1339777_1340584_+	sel1 repeat family protein	NA	NA	NA	NA
WP_003534544.1\|1340642_1341434_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_003534546.1\|1341641_1343105_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_003534548.1\|1343130_1343460_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.6e-21	48.6
WP_003534550.1\|1343676_1344894_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_013844330.1\|1344991_1346749_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_013844331.1\|1346812_1349650_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_013844332.1\|1349770_1350805_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_013844333.1\|1350877_1351717_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-32	34.7
WP_003534560.1\|1351709_1352429_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.7e-40	44.0
WP_003534562.1\|1352493_1353603_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.1e-10	32.6
WP_003534564.1\|1353697_1353904_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_013844334.1\|1353977_1354625_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1354621_1355464_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_003534571.1\|1355600_1356884_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_003534572.1\|1356911_1357682_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-22	30.9
WP_003534574.1\|1357678_1358332_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-15	35.2
WP_003534576.1\|1358503_1359157_+	hypothetical protein	NA	NA	NA	NA
WP_013844335.1\|1359321_1360860_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8
WP_003534583.1\|1360964_1361840_-	ATP-binding protein	NA	NA	NA	NA
WP_003534584.1\|1362178_1362511_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_013844336.1\|1362676_1365253_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.6e-52	47.2
WP_013844337.1\|1365255_1365642_+	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_003529514.1\|1365663_1366506_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_003529516.1\|1366600_1367056_+	hypothetical protein	NA	NA	NA	NA
WP_003529519.1\|1367085_1368504_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_074934805.1\|1368596_1368740_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_003529522.1\|1369046_1369190_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_086022568.1\|1369433_1369877_-	hypothetical protein	NA	NA	NA	NA
WP_003529524.1\|1370927_1372403_+	trigger factor	NA	NA	NA	NA
1371479:1371495	attL	NA	NA	NA	NA
WP_003529526.1\|1372695_1375560_-	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	1.6e-266	51.2
WP_003529528.1\|1375559_1375922_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_013844340.1\|1375938_1377078_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_013844341.1\|1377500_1378709_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.4e-67	39.1
WP_013844342.1\|1378763_1378952_-	hypothetical protein	Q3HQX5	Burkholderia_phage	5.2e-09	48.2
WP_013844343.1\|1379081_1379285_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_013844344.1\|1379284_1379947_+	hypothetical protein	A0A2H4PRE3	Proteus_phage	1.5e-15	30.6
1379388:1379404	attR	NA	NA	NA	NA
WP_013844345.1\|1379936_1382039_+\|terminase	phage terminase large subunit family protein	M4QRH8	Loktanella_phage	1.1e-208	52.4
WP_013844346.1\|1382152_1382374_+\|tail	Head-to-tail joining protein W gpW family protein	G8DCP3	Silicibacter_phage	5.1e-08	49.2
WP_013844347.1\|1382375_1384202_+\|portal	phage portal protein	G8DCP2	Silicibacter_phage	2.7e-155	53.6
WP_013844348.1\|1384191_1385514_+	S49 family peptidase	M4QNY7	Loktanella_phage	3.5e-91	51.5
WP_013844349.1\|1385558_1385999_+\|head	head decoration protein	A0A248XD52	Klebsiella_phage	2.8e-05	35.7
WP_013844350.1\|1386037_1387129_+\|capsid	major capsid protein	A0A1V0DX27	Synechococcus_virus	2.3e-32	35.9
WP_013844351.1\|1387219_1387561_+	hypothetical protein	NA	NA	NA	NA
WP_050812784.1\|1387614_1387938_+	hypothetical protein	NA	NA	NA	NA
WP_013844353.1\|1387937_1388522_+\|tail	phage tail protein	I6NTN8	Burkholderia_phage	2.1e-32	39.9
WP_013844354.1\|1388518_1389052_+	hypothetical protein	I6NP98	Burkholderia_phage	2.3e-41	50.0
WP_013844355.1\|1389101_1389890_+	hypothetical protein	A0A1V0DX22	Synechococcus_virus	5.6e-65	48.6
WP_013844356.1\|1389919_1390348_+	hypothetical protein	S4TQV5	Salmonella_phage	9.0e-09	35.8
WP_013844357.1\|1390597_1395649_+	tape measure protein	I6NLI9	Burkholderia_phage	1.3e-114	30.3
WP_013844358.1\|1395648_1396887_+	hypothetical protein	J9STL4	Pseudomonas_phage	1.8e-65	35.2
WP_013844359.1\|1396888_1397704_+	phage BR0599 family protein	K4I436	Providencia_phage	9.6e-60	43.0
WP_013844360.1\|1397715_1397952_+	hypothetical protein	A0A0U3E4J1	Pseudomonas_phage	7.2e-16	54.5
WP_013844361.1\|1397948_1398164_+	hypothetical protein	NA	NA	NA	NA
WP_013844362.1\|1398156_1400361_+	hypothetical protein	J9RWA5	Pseudomonas_phage	9.3e-166	44.5
WP_013844363.1\|1400415_1401615_+	DUF3380 domain-containing protein	A0A0A8IK88	Aurantimonas_phage	3.3e-80	54.1
WP_013844364.1\|1401611_1402523_+	hypothetical protein	H6WYH7	Enterobacter_phage	9.2e-43	36.6

DBSCAN-SWA_4

1422759 : 1429164

Klebsiella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050812785.1\|1422759_1424031_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.4e-68	39.3
WP_013844403.1\|1424027_1424360_-	hypothetical protein	NA	NA	NA	NA
WP_041915120.1\|1424432_1424654_-	hypothetical protein	A0A0G2T5T5	Pseudomonas_phage	1.0e-11	49.2
WP_013844405.1\|1424910_1425600_-	hypothetical protein	G1D5Z8	Mycobacterium_phage	6.8e-06	28.9
WP_041915070.1\|1425627_1427475_-	methyltransferase	A0A2I7RNS1	Vibrio_phage	5.3e-29	41.0
WP_013844407.1\|1427635_1428109_-	hypothetical protein	F8TVD0	EBPR_siphovirus	9.0e-26	47.4
WP_013844408.1\|1428139_1428433_-	hypothetical protein	NA	NA	NA	NA
WP_013844409.1\|1428429_1429164_-	hypothetical protein	A0A1W6DXS6	Sphingobium_phage	1.8e-25	60.0

DBSCAN-SWA_5

1433603 : 1445580

Klebsiella_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844418.1\|1433603_1436024_-	bifunctional DNA primase/polymerase	A0A221SAP5	Ralstonia_phage	4.1e-74	35.3
WP_013844419.1\|1436141_1436459_-	hypothetical protein	NA	NA	NA	NA
WP_013844420.1\|1436619_1437105_+	hypothetical protein	NA	NA	NA	NA
WP_013844421.1\|1437243_1437780_+	NUMOD4 domain-containing protein	A0A0A7DMX6	Lactobacillus_phage	4.9e-20	39.2
WP_013844422.1\|1437779_1439006_+	DUF2800 domain-containing protein	Q775A7	Bordetella_phage	4.9e-31	30.0
WP_013844423.1\|1439032_1439713_+	DUF2815 family protein	A0A248XD44	Klebsiella_phage	2.1e-23	37.6
WP_177188720.1\|1439803_1440379_+	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	3.3e-38	47.2
WP_013844425.1\|1440378_1442442_+	DNA-directed DNA polymerase B	I6NRF1	Burkholderia_phage	9.4e-120	38.2
WP_143058384.1\|1442454_1442904_+	deoxycytidylate deaminase	M4QP46	Loktanella_phage	7.0e-36	60.0
WP_013844427.1\|1442896_1443184_+	VRR-NUC domain-containing protein	A0A1B2AQ43	Escherichia_phage	3.2e-10	43.4
WP_013844428.1\|1443158_1444727_+	DEAD/DEAH box helicase	A0A097EW18	Ruegeria_phage	1.7e-121	50.1
WP_143058385.1\|1444860_1445580_+	helix-turn-helix domain-containing protein	A0A248XD56	Klebsiella_phage	6.1e-34	37.5

DBSCAN-SWA_6

1810386 : 1892173

Sinorhizobium_phage(72.09%)

portal,tRNA,transposase,tail,integrase,protease,capsid,holin,terminase,head

attL 1823583:1823601|attR 1903550:1903568

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969540.1\|1810386_1811088_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_003535321.1\|1811107_1811869_-	ABC transporter permease	NA	NA	NA	NA
WP_003535323.1\|1811865_1812792_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.7e-24	34.7
WP_010969541.1\|1812912_1813230_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010969542.1\|1813435_1813960_-	acetyltransferase	NA	NA	NA	NA
WP_010969543.1\|1813952_1814243_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_010969544.1\|1814382_1815018_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014529448.1\|1814996_1815179_+	hypothetical protein	NA	NA	NA	NA
WP_017263222.1\|1815185_1815566_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_003535329.1\|1815795_1817010_-	extensin family protein	NA	NA	NA	NA
WP_010969547.1\|1817241_1817796_-	membrane protein	NA	NA	NA	NA
WP_010969548.1\|1818029_1819844_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.5e-12	47.2
WP_003535335.1\|1820053_1820443_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010969549.1\|1820454_1821045_+	hypothetical protein	NA	NA	NA	NA
WP_003535339.1\|1821074_1821428_-	DMT family protein	NA	NA	NA	NA
WP_003535341.1\|1821642_1824600_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
1823583:1823601	attL	NA	NA	NA	NA
WP_013844519.1\|1824898_1825459_+	hypothetical protein	NA	NA	NA	NA
WP_010969551.1\|1825720_1826338_-	J domain-containing protein	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	5.3e-10	48.3
WP_003535347.1\|1827169_1827382_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.6e-12	54.5
WP_013844520.1\|1827509_1828667_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_013844521.1\|1828759_1829848_+\|integrase	site-specific integrase	I6NSG1	Burkholderia_phage	4.8e-115	58.2
WP_013844522.1\|1830355_1831063_+	thiol reductase thioredoxin	NA	NA	NA	NA
WP_013844523.1\|1833219_1834746_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_013844524.1\|1835315_1835480_+	hypothetical protein	NA	NA	NA	NA
WP_013844525.1\|1835532_1835847_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	2.8e-07	28.0
WP_080564421.1\|1836082_1836499_+	hypothetical protein	NA	NA	NA	NA
WP_013844526.1\|1836904_1838035_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_013844528.1\|1840534_1841368_-\|transposase	IS5-like element ISRm4-3 family transposase	NA	NA	NA	NA
WP_013844530.1\|1841973_1842300_-\|holin	phage holin family protein	A0A291AUN9	Sinorhizobium_phage	3.4e-48	85.2
WP_041915131.1\|1842300_1842513_-	hypothetical protein	J7F8X5	Agrobacterium_phage	6.0e-14	62.1
WP_013844532.1\|1842665_1843481_-	membrane protein	NA	NA	NA	NA
WP_013844533.1\|1843742_1844078_-	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	4.1e-25	68.5
WP_013844534.1\|1844064_1844412_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.1e-20	47.4
WP_013844003.1\|1844411_1845512_-	hypothetical protein	A0A291AUN5	Sinorhizobium_phage	3.3e-31	55.8
WP_013844535.1\|1845523_1847059_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	1.3e-262	88.0
WP_013844536.1\|1847058_1849716_-	DUF1983 domain-containing protein	A0A291AUN1	Sinorhizobium_phage	4.4e-263	64.3
WP_013844537.1\|1849722_1850127_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	8.4e-49	73.9
WP_013844538.1\|1850227_1850818_-	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	3.4e-75	71.6
WP_013843997.1\|1850814_1851465_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	8.7e-80	70.5
WP_013844539.1\|1851464_1853336_-\|tail	tail tape measure protein TP901 core region	A0A291AUM6	Sinorhizobium_phage	3.3e-180	58.5
WP_013844540.1\|1853429_1853609_+	hypothetical protein	NA	NA	NA	NA
WP_041915043.1\|1853609_1853801_-	hypothetical protein	A0A291AUN4	Sinorhizobium_phage	1.5e-19	74.2
WP_013844541.1\|1853848_1854250_-	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	1.4e-48	76.7
WP_011975792.1\|1854262_1854673_-\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_013844542.1\|1854765_1855230_-	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	5.1e-50	64.9
WP_013844543.1\|1855231_1855528_-	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	5.1e-27	63.9
WP_013844544.1\|1855530_1855857_-	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	4.0e-33	68.9
WP_013844545.1\|1855853_1856321_-	hypothetical protein	NA	NA	NA	NA
WP_013844546.1\|1856395_1857427_-\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	3.5e-176	86.2
WP_013844547.1\|1857454_1857811_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	1.5e-46	84.7
WP_013844548.1\|1857813_1858365_-	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	1.1e-46	83.0
WP_013844549.1\|1858390_1859296_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	7.2e-149	87.7
WP_013844550.1\|1859292_1861017_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	5.7e-288	83.9
WP_013844551.1\|1861013_1861250_-\|head,tail	head-to-tail joining protein	A0A291AUL5	Sinorhizobium_phage	1.5e-26	82.1
WP_013844552.1\|1861260_1863303_-\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	0.0e+00	89.2
WP_013844553.1\|1863299_1863938_-	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	1.7e-75	74.1
WP_013844554.1\|1864081_1864828_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	7.3e-115	83.5
WP_013844555.1\|1865067_1865733_-	NusG antitermination factor	A0A291AUS6	Sinorhizobium_phage	1.7e-38	43.4
WP_041915080.1\|1865716_1866970_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	2.1e-154	71.8
WP_013844557.1\|1867080_1867329_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_013844558.1\|1867334_1867640_-	hypothetical protein	A0A291AUK8	Sinorhizobium_phage	2.1e-20	54.0
WP_013844559.1\|1867636_1869160_-	S-adenosylmethionine-binding protein	F8TVB4	EBPR_siphovirus	8.5e-17	33.7
WP_013844560.1\|1869156_1869306_-	hypothetical protein	NA	NA	NA	NA
WP_013844561.1\|1869302_1869545_-	hypothetical protein	NA	NA	NA	NA
WP_013844562.1\|1869544_1869766_-	hypothetical protein	NA	NA	NA	NA
WP_013844563.1\|1869765_1870221_-	hypothetical protein	NA	NA	NA	NA
WP_013844564.1\|1870439_1870685_-	hypothetical protein	NA	NA	NA	NA
WP_013844565.1\|1870771_1871545_+	LexA family transcriptional regulator	A0A141GF24	Brucella_phage	2.3e-63	52.7
WP_013844566.1\|1871793_1871979_+	hypothetical protein	NA	NA	NA	NA
WP_013844567.1\|1872099_1872273_+	hypothetical protein	NA	NA	NA	NA
WP_013844568.1\|1872285_1872465_+	hypothetical protein	NA	NA	NA	NA
WP_127637852.1\|1872595_1873018_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	4.0e-41	52.9
WP_013844571.1\|1873014_1873362_+	DUF4326 domain-containing protein	A0A291AUQ7	Sinorhizobium_phage	4.1e-12	35.3
WP_013844572.1\|1873358_1873892_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	3.6e-31	47.5
WP_013844573.1\|1873888_1874260_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	1.8e-45	68.0
WP_013844574.1\|1874256_1874550_+	pyocin activator PrtN family protein	I6NSR8	Burkholderia_phage	2.0e-23	62.4
WP_013844575.1\|1874650_1876108_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_013844576.1\|1876183_1876807_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_013844577.1\|1876851_1877535_+	B3/4 domain-containing protein	NA	NA	NA	NA
WP_013844578.1\|1878215_1879118_+	hypothetical protein	NA	NA	NA	NA
WP_003536840.1\|1879277_1879526_-	hypothetical protein	NA	NA	NA	NA
WP_003536844.1\|1879960_1880197_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_003536846.1\|1880640_1880850_+	hypothetical protein	NA	NA	NA	NA
WP_003536848.1\|1881036_1881723_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_010969554.1\|1881774_1882305_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_003536852.1\|1882314_1882710_-	transcriptional repressor	NA	NA	NA	NA
WP_010969555.1\|1882709_1883537_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_013844580.1\|1883529_1884438_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	7.8e-10	28.3
WP_010969557.1\|1884582_1885605_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_013844581.1\|1885998_1886379_-	RcnB family protein	NA	NA	NA	NA
WP_010969559.1\|1886507_1888133_-	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_010969560.1\|1888483_1889059_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_013844582.1\|1889055_1890849_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_127515594.1\|1891069_1892173_+\|transposase	IS481 family transposase	NA	NA	NA	NA
1903550:1903568	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2315303 : 2327671

Paracoccus_phage(55.56%)

portal,tail,protease,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844683.1\|2315303_2317727_-	hypothetical protein	A0A141GEY5	Brucella_phage	1.3e-189	60.1
WP_013844684.1\|2317711_2318110_-	hypothetical protein	A0A141GEY4	Brucella_phage	4.1e-32	48.1
WP_013844685.1\|2318109_2318703_-	hypothetical protein	A0A141GEX4	Brucella_phage	1.3e-66	59.0
WP_013844686.1\|2318702_2319383_-	hypothetical protein	A0A141GEX3	Brucella_phage	7.1e-48	47.6
WP_013844687.1\|2319385_2321323_-\|tail	phage tail tape measure protein	A0A0U2BXT9	Paracoccus_phage	9.0e-56	51.8
WP_013844688.1\|2321614_2321980_-	gene transfer agent family protein	NA	NA	NA	NA
WP_013844689.1\|2321982_2322414_-\|tail	tail protein	NA	NA	NA	NA
WP_013844690.1\|2322436_2322820_-	hypothetical protein	NA	NA	NA	NA
WP_013844691.1\|2322827_2323304_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	1.1e-26	45.8
WP_013844692.1\|2323303_2323639_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013844693.1\|2323638_2324220_-	hypothetical protein	NA	NA	NA	NA
WP_013844694.1\|2324222_2324435_-	hypothetical protein	NA	NA	NA	NA
WP_013844695.1\|2324495_2325701_-\|capsid	phage major capsid protein	A0A0U2C0U7	Paracoccus_phage	1.2e-130	64.9
WP_013844696.1\|2325731_2326427_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	8.0e-55	48.9
WP_013844697.1\|2326423_2327671_-\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	1.1e-123	58.6

DBSCAN-SWA_8

2359949 : 2369584

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2359949_2362004_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_013844736.1\|2362436_2363471_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2363494_2364682_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2364941_2366852_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2366897_2368901_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2369134_2369584_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_9

2401350 : 2453164

Klosneuvirus(14.29%)

holin,transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969874.1\|2401350_2402070_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|2402125_2402431_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2402661_2403765_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_013844745.1\|2403971_2404142_-	hypothetical protein	NA	NA	NA	NA
WP_003534506.1\|2404237_2404693_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2404689_2405160_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2405205_2405748_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2405922_2406108_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010969879.1\|2406126_2407386_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_013844746.1\|2407382_2408015_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|2408011_2408635_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_013844747.1\|2408993_2410007_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2410010_2410931_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2410927_2413741_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2413751_2415821_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|2415835_2416387_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2416644_2417637_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2417802_2418009_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010969889.1\|2418071_2418980_+	cell filamentation protein	NA	NA	NA	NA
WP_010969890.1\|2419104_2419596_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2419678_2420581_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2420774_2421290_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2421293_2422121_+	anti-sigma factor	NA	NA	NA	NA
WP_010969893.1\|2422669_2422921_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|2423058_2424768_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534438.1\|2425239_2425827_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_013844749.1\|2426240_2428502_+	TonB-dependent receptor	NA	NA	NA	NA
WP_013844750.1\|2429123_2429702_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_013844751.1\|2429698_2430187_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041915140.1\|2430214_2431006_-	APH(3'') family aminoglycoside O-phosphotransferase	Q75ZG1	Hepacivirus	2.8e-24	33.2
WP_010969898.1\|2431064_2431529_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|2431525_2432446_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|2432614_2434804_-	anthranilate synthase	NA	NA	NA	NA
WP_178385068.1\|2434917_2434962_-	trpE operon leader peptide TrpLE	NA	NA	NA	NA
WP_010969901.1\|2435076_2437308_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_017272446.1\|2437584_2438418_+	extensin family protein	NA	NA	NA	NA
WP_013844754.1\|2438578_2440285_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2440348_2441572_-	DUF2333 family protein	NA	NA	NA	NA
WP_010969905.1\|2441575_2442865_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2443048_2444212_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2444389_2444794_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2444906_2446823_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2446826_2447975_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|2448036_2449125_-	hypothetical protein	NA	NA	NA	NA
WP_013844755.1\|2449285_2449873_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	3.5e-51	54.2
WP_010969911.1\|2450159_2451116_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|2451272_2452118_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|2452114_2453164_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015596

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015591

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_015597

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_015590

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection