CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017561	Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence	1 crisprs	NA	0	1	0	0
NC_017562	Xylella fastidiosa subsp. fastidiosa GB514, complete genome	1 crisprs	DEDDh,cas3,csa3,Cas9_archaeal,c2c8_V-U2,WYL	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017561_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017561_1

17094-17201

Orphan

Consensus_repeat	Method
TTACCGTCGCAGCACTCGCCTTTTTACCGTCGCAGCATCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017561_1

>merge|NC_017561|1|17094-17201|CRISPRCasFinder
TTACCGTCGCAGCACTCGCCTTTTTACCGTCGCAGCATCCTCATGTACCGTCGCAGAATCCTAGATTTTACCGTCGCAGCATTCGCCTTTTTACCGTCGCAGCATCCT

>NC_017561|1|1|17094-17201|CRISPRCasFinder
TTACCGTCGCAGCACTCGCCTTTTTACCGTCGCAGCATCCT	CATGTACCGTCGCAGAATCCTAGATT
TTACCGTCGCAGCATTCGCCTTTTTACCGTCGCAGCATCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017561.1\|WP_014607314.1\|14966_15236_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_017561.1\|WP_013087943.1\|23371_23635_+\|antitoxin	unknown	unknown	gnl\|CDD\|225215
NC_017561.1\|WP_014607308.1\|11830_12151_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_017561.1\|WP_155115104.1\|21283_21934_+\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	unknown
NC_017561.1\|WP_155115103.1\|20784_20952_-\|hypothetical-protein	unknown	unknown	unknown
NC_017561.1\|WP_038211605.1\|15219_15450_-\|TraY-domain-containing-protein	unknown	unknown	gnl\|CDD\|227054
NC_017561.1\|WP_014607318.1\|19465_19909_-\|hypothetical-protein	unknown	unknown	unknown
NC_017561.1\|WP_014607310.1\|12635_12815_-\|hypothetical-protein	unknown	unknown	unknown
NC_017561.1\|WP_013087971.1\|19909_20662_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184370
NC_017561.1\|WP_080715118.1\|12153_12633_-\|hypothetical-protein	unknown	unknown	unknown
NC_017561.1\|WP_013087959.1\|11442_11826_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368285
NC_017561.1\|WP_152534390.1\|14090_14603_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NC_017561.1\|WP_013087965.1\|15626_16229_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_017561.1\|WP_038211609.1\|18812_19037_+\|antitoxin-MazE-family-protein	unknown	unknown	gnl\|CDD\|371540
NC_017561.1\|WP_014607322.1\|21952_22207_+\|hypothetical-protein	unknown	unknown	unknown
NC_017561.1\|WP_128723949.1\|16225_17092_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|115680
NC_017561.1\|WP_014607307.1\|8398_9064_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271354
NC_017561.1\|WP_014607324.1\|23631_23958_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_017561.1\|WP_041572376.1\|17711_18461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378704
NC_017561.1\|WP_014607323.1\|22212_23313_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|368892

Protein	Function_ID	Function_description	E-value
NC_017561.1\|WP_014607314.1\|14966_15236_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.7384e-17
NC_017561.1\|WP_014607308.1\|11830_12151_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	2.25053e-07
NC_017561.1\|WP_014607323.1\|22212_23313_+\|AAA-family-ATPase	gnl\|CDD\|368892	pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	2.08622e-57
NC_017561.1\|WP_013087943.1\|23371_23635_+\|antitoxin	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.42668e-05
NC_017561.1\|WP_038211605.1\|15219_15450_-\|TraY-domain-containing-protein	gnl\|CDD\|227054	COG4710, COG4710, Predicted DNA-binding protein with an HTH domain [General function prediction only].	2.75434e-14
NC_017561.1\|WP_013087971.1\|19909_20662_-\|hypothetical-protein	gnl\|CDD\|184370	PRK13886, PRK13886, conjugal transfer protein TraL; Provisional.	2.91174e-93
NC_017561.1\|WP_014607324.1\|23631_23958_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.73219e-29
NC_017561.1\|WP_013087959.1\|11442_11826_-\|hypothetical-protein	gnl\|CDD\|368285	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein. This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.	4.26063e-07
NC_017561.1\|WP_152534390.1\|14090_14603_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	5.48683e-33
NC_017561.1\|WP_013087965.1\|15626_16229_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.98305e-56
NC_017561.1\|WP_038211609.1\|18812_19037_+\|antitoxin-MazE-family-protein	gnl\|CDD\|371540	pfam11455, DUF3018, Protein of unknown function (DUF3018). This is a bacterial family of uncharacterized proteins.	4.54252e-27
NC_017561.1\|WP_014607307.1\|8398_9064_-\|hypothetical-protein	gnl\|CDD\|271354	cd14262, VirB5_like, VirB5 protein family. This family contains VirB5 domains, including TraC, a VirB5 homolog encoded by the pKM101 plasmid, and similar proteins. VirB5 is one of 11 conserved proteins (VirB1-VirB11) in Agrobacterium tumefaciens, the causative agent of crown gall disease, that span the inner and the outer membrane, and is involved in type IV DNA secretion systems (T4SS) which mediate the translocation of virulence factors (proteins and/or DNA) from Gram-negative bacteria into eukaryotic cells. VirB5 assembles extracellular pili by interacting with several essential proteins. VirB2-VirB5 complex formation precedes incorporation into pili; it depends on the inner membrane protein VirB4 to interact directly with and stabilize VirB8 in order for VirB5 to bind to VirB8 and VirB10. Mutagenesis studies show that VirB5 proteins participate in protein-protein interactions important for pilus assembly and function.	5.17053e-31
NC_017561.1\|WP_128723949.1\|16225_17092_+\|hypothetical-protein	gnl\|CDD\|115680	pfam07042, TrfA, TrfA protein. This family consists of several bacterial TrfA proteins. The trfA operon of broad-host-range IncP plasmids is essential to activate the origin of vegetative replication in diverse species. The trfA operon encodes two ORFs. The first ORF is highly conserved and encodes a putative single-stranded DNA binding protein (Ssb). The second, trfA, contains two translational starts as in the IncP alpha plasmids, generating related polypeptides of 406 (TrfA1) and 282 (TrfA2) amino acids. TrfA2 is very similar to the IncP alpha product, whereas the N-terminal region of TrfA1 shows very little similarity to the equivalent region of IncP alpha TrfA1. This region has been implicated in the ability of IncP alpha plasmids to replicate efficiently in Pseudomonas aeruginosa.	8.51523e-23
NC_017561.1\|WP_041572376.1\|17711_18461_+\|hypothetical-protein	gnl\|CDD\|378704	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term. The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.	5.93978e-06

>NC_017561.1|WP_128723949.1|16225_17092_+|hypothetical-protein
MSSIELSLTKMRARQEANLQKSLLQQLQLPIWTDAQRGVPNSLLRSALFAAIQRGKRPYLKRQVMASVENASITYTGIRLCQDYLTVWECLVHVAREQQLGNRCEVTTYQLLRLLDKKDTGGNRRVLRRQLAELQATALEVRQGRYTYSGSLIDEAYHDEETGRAIIVLNQRIVALYQSDGYTRVSWQIRCDLNTSLAKWLHGFYATHRQPYPYSVAKIHELCGSAAKSLKDFQEKTLAPALEELASVCKNHGEHFSYMIERRPGGKSIVYVTRDVGTKLPLTPEICG
>NC_017561.1|WP_013087965.1|15626_16229_+|recombinase-family-protein
MEKSTYTTNSLRLGYARVSTDDQDMALQLDALAKVQCDRVFSEKASSGKERPQLEECLRTLRRGDVLTVWRLDRLGRSMTELVAIVNDLASRGVTFESLTEHIDTSSASGKFAFHLFSALAEFERNTIKERTRAGLAAARARGKMGGRPAKVTPKAKREMKALYTSQEVSVKDICTRYNITRSTFYRVVLERDYTTKEEA
>NC_017561.1|WP_038211605.1|15219_15450_-|TraY-domain-containing-protein
MASVSLRLPDEVTQRLENLAALTGRSKTFYMVEAIREHIDDLEDLYLAERELEAIRSGNSQTVPLEEVMQRYGMEG
>NC_017561.1|WP_014607314.1|14966_15236_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAWKVELSSLAQKNLDQLDPQIALRVLSFLHERVAPLDDPRSIGESLKGSRLGEFWKYRVGDYRIISSIEDGALRILVVKIGNRREVYR
>NC_017561.1|WP_152534390.1|14090_14603_-|restriction-endonuclease
MSSLDTALHASGLLRLAGWISMLICLLVAGMSWRQAQLRKELLDRQRSLDDLRAMSWKKFELLVGECFRRQGYRVSETGKGGADGGIDLLLHRDSERVLVQCKQWRTFSVGVPVVREMFGLMIHHDADRVKIVCCGNFTRDAVAFAKGKPIDLISGDLFLGLVKDSQGTY
>NC_017561.1|WP_014607310.1|12635_12815_-|hypothetical-protein
MKNKKGNVLIMTLFISSITVIFMTACQSHPQLKKVARSADEKPINTPEVVEKLKEKYER
>NC_017561.1|WP_080715118.1|12153_12633_-|hypothetical-protein
MAMDGNFREENLLFKLLKSDKRLWIFAIMVALIGTINAEQKADDTQPFKATKAVEAPSTSTAKDFAVKERVDRMAILVHQRNEIFSKLKYFETSGDEAALERIQSELRSIDREISLISDARNEDTDSIYNGNKESKQSKSEEITYKSWDIFKNFGLNGN
>NC_017561.1|WP_014607308.1|11830_12151_-|TrbC/VirB2-family-protein
MKHIFNNFVAKYHHVILAIAISTTSSNALASVGGLGGLRRAQTAAENIKTGLYALVGVIAMIYLIYLGVMAFTEKKSWADFGWGVVYVSLVGGAVALGGWAWTLFA
>NC_017561.1|WP_013087959.1|11442_11826_-|hypothetical-protein
MTDEQSPEEYISYNGLGRSPMIWGIPYMAGLAIMCLSLLGGLLLGTFVASWGWLFSLIGVPMILFVKIICTNDDKAIRILMLEVKWSLLKALNGNAKYHGGTMAIAPTTYGRKLKNVKRYFKKTVCG
>NC_017561.1|WP_014607307.1|8398_9064_-|hypothetical-protein
MSFTGILKKTRVSISAFVFVFAGAAHAQLQVYDAANISKSIANHAESIAKWKQQFEQLKQQIDQHQKQYEAITGSRGMGALLDNSALKASLPADWKQVLSDVKKTSAYATERSKYPTSENLQKTNAMYDVIASQDVIMSDLYSKANQRLSLIQSLTAQIDSANDPAAKADLANRLINEQNAIQANQNLVTILQAKQKQELEIASQAAVEELSCKEFKRSGC
>NC_017561.1|WP_041572376.1|17711_18461_+|hypothetical-protein
MLMNQEIKERIFAAADELHAANPNGEFPNVEAVRQLSRAGMNNVVEAMKEWRAKQRKQVQAVREPLPTKLHGILQATGQSLWETAQQLANESLEAARAAFEAEKTDLTELSVQQSAAFEAQTGELEVAQDRIVKLEAQATATIEQQQKQANELAELRTQYEESQRRATLAEQKAQETEHRATELRAELDRAHQDADRLRQERDKARDAAATAREEAAKLRGELEAIKTQNAVLLAALKPAGHLKRTQKA
>NC_017561.1|WP_038211609.1|18812_19037_+|antitoxin-MazE-family-protein
MGTMHVNARVQKHPNALRMAGLRPVQIWVPDTRRPDFAEECRHQCLLVAQADSTDTAMHQFMDETLADVDGWTE
>NC_017561.1|WP_014607318.1|19465_19909_-|hypothetical-protein
MNKRQLIAAIVEKSGIKLTEDDPAFLLVDLNLMMLEKQTSEAAKQLEAATEKFNAVTTHNVDDFVSVANEALSKFMQRTNEIKSSLDDLSKNLAQVATVTSTSSTHEVTKISHRSELLWWLVPLAFGIGVLAGIGITFVVFMPTLPR
>NC_017561.1|WP_013087971.1|19909_20662_-|hypothetical-protein
MSAKSVKKHPNNSIHFTLQGKGGVGKSLVSSLLAQYFNSIDGCTVKCVDTDPVNQTLSNYKALNAQHIQLMNGSKINERNFDHLMERLMTEEGIFVVDNGASSFVPLSNYLIENNAISMLKESGRNVFIHSVLTGGQALMDTLAGFKSLAEQADTNNIVIWLNEYFGAIEANGKTFTEMKVYTENAHKVRGIVRIIERNQDTFGKDMEVMASKKLTFSEVLSGTDFTLMAKQRIKTVQRELNEQLDAIGF
>NC_017561.1|WP_155115103.1|20784_20952_-|hypothetical-protein
MRQEVILAELKAKGYKTTLKGFRNLLYRARIRAAKNPEEFQTKVEQKMKKKMRNH
>NC_017561.1|WP_155115104.1|21283_21934_+|plasmid-mobilization-relaxosome-protein-MobC
MLLQIARLTAWLYFGLPHLIGDILVTGRDMLRVDGVPPKTKRQLQEAAMQLYGKPNASLLVRSLIAGHLLKSVETVKPLTVADVRDMVRVELRLPRVALERINDMADERFSSRNYYLTSVILAHLGHPQLHGDEIEVLRRSNYELSRVGTNLNQVAKAFNTLVKMRGGEKLPEVGKKMASLRREITEHTGKVLRVLEAGTTVWESRGRGQRQRKHK
>NC_017561.1|WP_014607322.1|21952_22207_+|hypothetical-protein
MLDLGINSGSISYEVALEVLGQSRQPFMQAIYKEKQKSVPSQVFIRYCENRLAALDEIQETLQPTDLATIERILTKGDLVFKVQ
>NC_017561.1|WP_014607323.1|22212_23313_+|AAA-family-ATPase
MVDYKPLTDNEVRDTAVAYYTERQGKSLAKENPIIVLVGGQPGAGKSTASSMVKAELTMQGGYVHVDADRMRERIRVGDSKPTSEQTQADAGRLVAVLRDQAIQGCRNIVEEGTFRDPDSTGKFVQALSERGYKVELFAVATSREESLLGIYQRHELQHAAGGTNPRFVSERYHDEAMQGFESTLARTAVQFERVRVADRSGEVLYDSDIQSNKQPNALEALAVSRKLTDIKLAEITKAWSAVEAVARQRNASFAYLEAVSGHVQRLDDMQKERIHGHAMNKLDENAATLLHDARYAQHTRSELAKAAYFRGFHEKASEFKGIEPDFSKYDATVASRQTLRQLPDVTELAGRAMPKLQRSNDGNSL
>NC_017561.1|WP_013087943.1|23371_23635_+|antitoxin
MHTTNLRKVGGSIMLAVPPAFLDQLHLEVGATVGLAVTDGRLVIEPVLHPQYTLDQLLAEAEASGAYPLPPEEREWVDAPAVGRELI
>NC_017561.1|WP_014607324.1|23631_23958_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MKRGDVYMVDLEPTAGHEQRGYRPVVVISSERFNRLTSCPVILPITNGGEFASRLGFAVELLGTITTGVVRCDQPRALDLLARNARKVESLPPNILADVLAKAVTIFQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_017561_1	1.1\|17135\|26\|NC_017561\|CRISPRCasFinder	17135-17160	26	NC_014111	Xylella fastidiosa plasmid pXF-RIV11, complete sequence	21419-21444	1.0
NC_017561_1	1.1\|17135\|26\|NC_017561\|CRISPRCasFinder	17135-17160	26	NC_014113	Xylella fastidiosa plasmid pXF-RIV19, complete sequence	20686-20711	1.0
NC_017561_1	1.1\|17135\|26\|NC_017561\|CRISPRCasFinder	17135-17160	26	NZ_CP006739	Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence	4596-4621	1.0
NC_017561_1	1.1\|17135\|26\|NC_017561\|CRISPRCasFinder	17135-17160	26	NC_017561	Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence	17135-17160	1.0

1. spacer 1.1|17135|26|NC_017561|CRISPRCasFinder matches to NC_014111 (Xylella fastidiosa plasmid pXF-RIV11, complete sequence) position: , mismatch: 0, identity: 1.0

catgtaccgtcgcagaatcctagatt	CRISPR spacer
catgtaccgtcgcagaatcctagatt	Protospacer
**************************

2. spacer 1.1|17135|26|NC_017561|CRISPRCasFinder matches to NC_014113 (Xylella fastidiosa plasmid pXF-RIV19, complete sequence) position: , mismatch: 0, identity: 1.0

catgtaccgtcgcagaatcctagatt	CRISPR spacer
catgtaccgtcgcagaatcctagatt	Protospacer
**************************

3. spacer 1.1|17135|26|NC_017561|CRISPRCasFinder matches to NZ_CP006739 (Xylella fastidiosa MUL0034 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

catgtaccgtcgcagaatcctagatt	CRISPR spacer
catgtaccgtcgcagaatcctagatt	Protospacer
**************************

4. spacer 1.1|17135|26|NC_017561|CRISPRCasFinder matches to NC_017561 (Xylella fastidiosa subsp. fastidiosa GB514 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

catgtaccgtcgcagaatcctagatt	CRISPR spacer
catgtaccgtcgcagaatcctagatt	Protospacer
**************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_017562_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017562_1

458858-458932

Orphan

Consensus_repeat	Method
AAGGTTTGGACGGTCTGGACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017562_1

>merge|NC_017562|1|458858-458932|CRISPRCasFinder
AAGGTTTGGACGGTCTGGACAGGCCCGCCGTTGCTCGTTCCAGGTCTGGACAGAGGTTTGGACGGTCTGGACAGG

>NC_017562|1|1|458858-458932|CRISPRCasFinder
AAGGTTTGGACGGTCTGGACAGG	CCCGCCGTTGCTCGTTCCAGGTCTGGACA
GAGGTTTGGACGGTCTGGACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017562.1\|WP_011098180.1\|467204_467867_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004088857.1\|461468_461870_+\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004088866.1\|462375_462822_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|181549
NC_017562.1\|WP_004089756.1\|464596_464800_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NC_017562.1\|WP_004088842.1\|455535_455772_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004088851.1\|458948_460418_-\|virulence-factor	unknown	unknown	gnl\|CDD\|227832
NC_017562.1\|WP_004088818.1\|451115_451418_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004088830.1\|453758_454016_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004088839.1\|455023_455539_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227798
NC_017562.1\|WP_004088854.1\|460414_461470_-\|DnaG-family-protein	unknown	unknown	gnl\|CDD\|223435
NC_017562.1\|WP_011098178.1\|462062_462392_+\|DUF5131-family-protein	unknown	unknown	gnl\|CDD\|377854
NC_017562.1\|WP_004088833.1\|454061_454490_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_155115078.1\|461971_462145_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004088848.1\|457943_458552_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_100206157.1\|454616_454916_-\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_004089758.1\|465102_465897_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NC_017562.1\|WP_126709098.1\|467968_468178_+\|hypothetical-protein	unknown	unknown	unknown
NC_017562.1\|WP_014607424.1\|455940_457947_-\|phage-terminase-large-subunit-family-protein	unknown	unknown	gnl\|CDD\|227812
NC_017562.1\|WP_004088821.1\|451767_452187_+\|Rnf-electron-transport-complex-subunit-RnfB	unknown	unknown	gnl\|CDD\|181550
NC_017562.1\|WP_004088824.1\|452304_452505_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017562.1\|WP_011098178.1\|462062_462392_+\|DUF5131-family-protein	gnl\|CDD\|377854	pfam07505, DUF5131, Protein of unknown function (DUF5131). This is a family of bacterial and phage proteins of unknown function. There are three highly conserved cysteine residues in the disposition, Cx6Cxxc, amongst many highly conserved residues.	1.21604e-11
NC_017562.1\|WP_004088821.1\|451767_452187_+\|Rnf-electron-transport-complex-subunit-RnfB	gnl\|CDD\|181550	PRK08764, PRK08764, Rnf electron transport complex subunit RnfB.	1.34309e-77
NC_017562.1\|WP_004089756.1\|464596_464800_+\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	0.000186694
NC_017562.1\|WP_004088866.1\|462375_462822_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|181549	PRK08763, PRK08763, single-stranded DNA-binding protein; Provisional.	3.70727e-96
NC_017562.1\|WP_004089758.1\|465102_465897_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.01262e-12
NC_017562.1\|WP_014607424.1\|455940_457947_-\|phage-terminase-large-subunit-family-protein	gnl\|CDD\|227812	COG5525, COG5525, Phage terminase, large subunit GpA [Replication, recombination and repair].	0
NC_017562.1\|WP_004088851.1\|458948_460418_-\|virulence-factor	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	0
NC_017562.1\|WP_004088854.1\|460414_461470_-\|DnaG-family-protein	gnl\|CDD\|223435	COG0358, DnaG, DNA primase (bacterial type) [DNA replication, recombination, and repair].	2.01301e-79
NC_017562.1\|WP_004088839.1\|455023_455539_-\|phage-portal-protein	gnl\|CDD\|227798	COG5511, COG5511, Bacteriophage capsid protein [General function prediction only].	2.75747e-35

>NC_017562.1|WP_004088848.1|457943_458552_-|hypothetical-protein
MGSVTTMTTAEYAKHRGVSDSYIRRMRRKGNVILGEDGRIHVNASDTLLDGMTHPVQGGKRGMTDPHAAAVPTFTVMTPQGIPVQEAVRRERVARALMAELDLGKQAEQLTCVDEVNRAVFTLVRQALNQLRGMSGRLRKTLAAETDAGKVTQIIDTDVAHICKQMQDAATTLLKTNTPDAEPVQANDTNDTLAFEEEGVSG
>NC_017562.1|WP_014607424.1|455940_457947_-|phage-terminase-large-subunit-family-protein
MSLDDFPDIQLANAYHTVSTAWQHAWEVPPRLEISQWADAYRKIARGSGAEPGQWRTDRHPPLREIMNCLSDHTPVQQVSFMKSGQIGATEIGINWVCYVIDRGIDSMIVTQPVKDLARTWTVAKFDPGVLDMPPLLNKLTTNNTFEKQYPGGTLFVKWANSSSQLRQITACYAFLDEIDEYPRNLNNQGTADQQIAARIMSHGERGKIYRACTPTVAGGSAIETNFLDGDQRHYHIHCPHCGGEQVLDLEHLQPDGTFACAVNGCIIQEHHKNTILKERGTGGTAFWHPHNPSAPPDHRSYHLWAAYAPLGLGLSWKQIADKWAEAKRDPSKLPGFTNLILGLPFQGERDVRAAHEVATLAEPGVYRGLVPLGGLVLAAGVDLAHDRAEIHLIATGRGQRRYIVDYAVIDLDPTVLDSYTDLDTYLRGTWKTACGIDMPISAVAIDGGNWTETVAQFIKQHVGWSGQSRILETPQGFLKQTLYLVRGRAEIKSDRAVYRPSKTTVDERGKTLARDVGVWGVGTSVLKHMIYGWLGAALAAKDNAAQTGTAEDISARMLRFPGGRGDDIPDPLHPDPGALPEHYFAGLTAEYFDKDAGRWIKPRGVRNEPLDTAVYALWATLAPALKVDVMRESQWEALEAIYQPTNGSLFDPPAAPPTDPAPAPCAQ
>NC_017562.1|WP_004088842.1|455535_455772_-|hypothetical-protein
MSLATDQVALLKDAYRKVLLGQSVRYGERQVTRADAKWISDELDKWLRRAAAEAAPSTSGTVRIAIADFRRDSGADAP
>NC_017562.1|WP_004088839.1|455023_455539_-|phage-portal-protein
MTTASPRLHRLVAAFDRGLLQLAPAWAASRAQSRVKAVAYRQAYEAAEKTHLRQASRDFGSGNTIVTMTGVALRNQARHLDRNHDIISGGLSTLVQNIIGPSGINIVPTPRDVDGNLVESLVDAILPLYHAWSKRPEVTWMHDWPSVQRRTGPLEIRRRPRSAWPGVAPCR
>NC_017562.1|WP_100206157.1|454616_454916_-|hypothetical-protein
MPPMKTSDVSALFAYLVIAVSLSLASCTSLAPSGILPTTRSEAVCDRLPPLPVPPISNEQPEIFAIFRRVIGLYINEINKYNAQVACRAQVHATHQEVP
>NC_017562.1|WP_004088833.1|454061_454490_-|hypothetical-protein
MGLIARLRRWYHLWVWRLRYWWYDTPSGVCAQHWAQGLGVLVFIVQLVRVWVAAALPAPHGAPAQAVYWWVWQLAIAVVAAYVSAALRPKPESVKPQQAQVPTVQDGQAVKHHFGTVWVGDEFILAWKMQGAIPIKTKGAGC
>NC_017562.1|WP_004088830.1|453758_454016_-|hypothetical-protein
MTEPAKTIAWCVTAYGTLTLSQAGSNCSVLSRWHCWEPLLQVVPLAVMAQVCDRGGNAIAGRVVCRVLFDWSVIVAAMLQGAANV
>NC_017562.1|WP_004088824.1|452304_452505_-|hypothetical-protein
MDVSDNGIHVFINPILDKVQWLAGAVLSVNVLCCSNALYWDVRIKCVCCAWKGSATGLLPWAVSIG
>NC_017562.1|WP_004088821.1|451767_452187_+|Rnf-electron-transport-complex-subunit-RnfB
MSSPPPLTLVERIDRLLPQTQCGQCGFQGCLPYAQAMARGEANIDRCPPGGDAGARALAHLLGLPPRPYDRNRGTQQQPQVAWIVEADCIGCTKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIELHPS
>NC_017562.1|WP_004088818.1|451115_451418_-|hypothetical-protein
MFSTTLCLLLAVGVCRCDETSGAVDVTTGESLILWSWIAHGYLAEVLLFGDECCGVAQFANIKWLGVFCSVVGAPGAQGIVVEVVGVVGWCEPFVFAMVC
>NC_017562.1|WP_004088851.1|458948_460418_-|virulence-factor
MTRPVITILDGGKGRSHGGGGGHGGVPGSDDWKQQLTRTRDGHVEGTMHNLITIIENDERLKALFWLNDSSNQVVMARPAPWQGSTRDEFVDADSSELAAWLQHPERYGMKCSDDNVLKAVIAVARRYRRHPIREYLTGVQWDGTPRVETMLIDMFGASDRTYSRQASLCFMVGAVARVLWVDPKNPSIGAKVDFMLVLEGPQGKHKSTSLSELFGTYWFVETAESPTGKDFYQVIQGCWGVEIGEMDSFGKADVTAVKVAITRRTDKFRAPYERLPNSYRRECVFVGTTNDREYLKDATGGRRFLPVRADGNVDVSRIVAERDQLWAEAVRLFLDHFPYWVLPDDAPAEQAARYIGDSWEARVEQFLAGQFRKTGDGKEIAPQRLKGTAGWRVLWTTTDELLEFAIGVDPARHDRSSQMRVASIMKRLGRDPVQGDTCVEDTWEHLRKRWPDTKTREQRWVREGACINEVRPVSKPLDDNGRDDAPDF
>NC_017562.1|WP_004088854.1|460414_461470_-|DnaG-family-protein
MTRVDTQALRARIDLVEVVGRYVTLQRTGAEYTGLCPFHDEHTPSFTVIPHKGFVHCFGCGAHHDAIGFVMRYLNVDFREAVRQLDRGALPQAEQQAQRQRPEYVPDMVWVPLLPVPEDAPEVMGDAHWTVPIWNPKRGRAARLKVQRLDAYRDAQGRLLGYVARAQIKDRDTGALKKWTPTLTWCVSPTGARQWCLQHFPEPRPLFGLDTLAVKPDAPVLIVEGEKCCAAGARAWPQYAVVAWPGGANGIRKVDWTPLAGRDVVLWPDADEVGRKAMLGNRTDAGDFRAGVAHYVSRVGVRSIGMIDTHGCSKGWDLADAFEKDGWTPPQAAAWAAARRVDVNVVRGGGR
>NC_017562.1|WP_004088857.1|461468_461870_+|hypothetical-protein
MLPPRLTPLRLLTVDLYPPLHPKVRGDIFPASWLSRTAGARAHLRQRLDVRLPLRPGLITERFDGLTQTPRHTHAPPRNSNTPCLHRDASASTRIRSRSANAAAPLTPGWLEYKASSAARNPAHCRGVIVTLP
>NC_017562.1|WP_155115078.1|461971_462145_-|hypothetical-protein
MINPCVVCIFSSADSRIDKNDLPFVRRILDESDDVIAAVMGVRGQVQAMFQQENTDA
>NC_017562.1|WP_011098178.1|462062_462392_+|DUF5131-family-protein
MRRTNGRSFLSIRLSADENMQTTHGFIKPCRQPVLCGSHSDVFDKDVPQQWHDALFSLIHATPNIHWLLLTKSSGNAHITDAVCSLSHVDIVRLPPPLPSRSTHNGTRN
>NC_017562.1|WP_004088866.1|462375_462822_+|single-stranded-DNA-binding-protein
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEGTIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
>NC_017562.1|WP_004089756.1|464596_464800_+|DUF4102-domain-containing-protein
MSKQAPQRCQFFFTAKALAALPPDPQRDYIVRDANTPGLALCVTKGGHKSFRFCYTADQFDRQGKRV
>NC_017562.1|WP_004089758.1|465102_465897_+|tyrosine-type-recombinase/integrase
MGGHAQGKRPVARGDQGGVVGHRHRRPQAWRWPCPAEANARTALVGKIYSFAVDAELIPYNSNPAVRLPRWKVPPRDRALQTGREFRVFWRMTDSDGYLTQPRPEGRQRYAWRHPHMDPDMVQVLRLIAMTGCRIQEITALRWREVDLDEAHIVLPSARVKNKREHMSSISGSTLAARIARQTGIGRGRVAATALYGSTPGRLRLPLAGGDAGGCCHLCGAALVRNRQSRPIDSIEHAGFNRPFLIPEDERRIQFCGFNGTNAL
>NC_017562.1|WP_011098180.1|467204_467867_-|hypothetical-protein
MQLDIESLCREAQEFSRIESSHPEPSLFGVTDGKAVGTYLEAKFCGYLHAKGYEFEAGNAANGLDFPSLNVDIKVTSIKQPQSSCPFRSIRQKIYGLGYCLLVFVYEKTDDPTTRTAILGMTDTVFVESEVTADFQMTKGLLEVLDADGNEDDLTSFIMARHLTTDEIELRQLAEEVMERRPVQGYLTISPALQWRLQYKRVIQKAGEVAGVRSIYKAGR
>NC_017562.1|WP_126709098.1|467968_468178_+|hypothetical-protein
MAPPAHASRACSLGPRPHTPEHAPSAASSGRLAEPPVCPGQGRNPSNQAACSRWRVVCGFWLRSGRSAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017562_1	1.1\|458881\|29\|NC_017562\|CRISPRCasFinder	458881-458909	29	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1189005-1189033	7	0.759
NC_017562_1	1.1\|458881\|29\|NC_017562\|CRISPRCasFinder	458881-458909	29	NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	503612-503640	7	0.759
NC_017562_1	1.1\|458881\|29\|NC_017562\|CRISPRCasFinder	458881-458909	29	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	774323-774351	7	0.759
NC_017562_1	1.1\|458881\|29\|NC_017562\|CRISPRCasFinder	458881-458909	29	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	774405-774433	7	0.759
NC_017562_1	1.1\|458881\|29\|NC_017562\|CRISPRCasFinder	458881-458909	29	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	80930-80958	8	0.724

1. spacer 1.1|458881|29|NC_017562|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ggcgtagtcgctcgttccaggtctggaag	Protospacer
  **. **.****************** .

2. spacer 1.1|458881|29|NC_017562|CRISPRCasFinder matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ccagccgttgctcgttccagggaaagatg	Protospacer
** ******************   .**..

3. spacer 1.1|458881|29|NC_017562|CRISPRCasFinder matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ccagccgttgctcgttccagggaaagatg	Protospacer
** ******************   .**..

4. spacer 1.1|458881|29|NC_017562|CRISPRCasFinder matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ccagccgttgctcgttccagggaaagatg	Protospacer
** ******************   .**..

5. spacer 1.1|458881|29|NC_017562|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.724

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
cggaacgtggctcgttccaggtctggcgc	Protospacer
*  . *** *****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

616946 : 626148

Xylella_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004087234.1\|616946_617348_+	hypothetical protein	C8CLG7	Xylella_phage	5.2e-67	95.5
WP_004087232.1\|617344_617536_+	hypothetical protein	NA	NA	NA	NA
WP_014607454.1\|617559_617751_+	hypothetical protein	C8CLG6	Xylella_phage	1.1e-17	78.1
WP_041572296.1\|617782_617980_+	hypothetical protein	C8CLG5	Xylella_phage	5.9e-24	90.6
WP_014607456.1\|617966_618464_+	hypothetical protein	C8CLG4	Xylella_phage	3.9e-48	90.1
WP_014607457.1\|618460_619738_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	5.7e-232	94.3
WP_004090881.1\|619737_620304_+	DUF2815 family protein	C8CLG2	Xylella_phage	8.3e-103	97.3
WP_012382638.1\|620294_621902_+	hypothetical protein	C8CLG1	Xylella_phage	1.2e-186	71.0
WP_011097961.1\|621903_624084_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	99.9
WP_011097962.1\|624080_624359_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-46	100.0
WP_011098229.1\|624360_624645_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_011098230.1\|624729_626148_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	7.6e-278	99.8

DBSCAN-SWA_2

1505897 : 1588884

Escherichia_phage(21.74%)

protease,integrase,portal,tail,capsid,plate,tRNA

attL 1508897:1508913|attR 1598459:1598475

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011097581.1\|1505897_1506395_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYZ2	Pandoravirus	3.7e-06	36.0
WP_011097582.1\|1506402_1506885_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_012382445.1\|1507110_1508469_+	divalent metal cation transporter	NA	NA	NA	NA
1508897:1508913	attL	NA	NA	NA	NA
WP_004088071.1\|1508979_1509744_-	arginyltransferase	NA	NA	NA	NA
WP_004088074.1\|1510661_1511513_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_004088076.1\|1512521_1512842_-	hypothetical protein	NA	NA	NA	NA
WP_014607606.1\|1513966_1516864_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_011097587.1\|1517720_1517921_-	hypothetical protein	NA	NA	NA	NA
WP_004089355.1\|1518153_1520145_-	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_004089351.1\|1520788_1523380_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_011097588.1\|1524610_1524832_+	hypothetical protein	NA	NA	NA	NA
WP_011097589.1\|1525330_1528357_+	TonB-dependent receptor	NA	NA	NA	NA
WP_004089347.1\|1528463_1529906_-	adenosylhomocysteinase	S4W1G4	Pandoravirus	3.3e-47	31.1
WP_004089343.1\|1531060_1532368_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_004089339.1\|1533251_1533956_-	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	1.0e-25	38.3
WP_038231911.1\|1534012_1535167_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_011097591.1\|1535246_1536038_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_004089335.1\|1536059_1536542_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_004089333.1\|1536538_1537555_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_004089330.1\|1537743_1540098_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_004089328.1\|1540196_1541531_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_004089326.1\|1541557_1542742_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_004089324.1\|1542744_1543599_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_011097592.1\|1543595_1544363_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	9.5e-17	34.8
WP_004089320.1\|1544365_1544923_-	ribosome recycling factor	NA	NA	NA	NA
WP_004089318.1\|1545676_1547020_-	outer membrane protein transport protein	NA	NA	NA	NA
WP_004089316.1\|1547251_1547932_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004089314.1\|1548050_1548371_+	DUF1820 family protein	NA	NA	NA	NA
WP_011097594.1\|1549251_1549476_+	hypothetical protein	NA	NA	NA	NA
WP_004089310.1\|1549583_1550315_-	UMP kinase	NA	NA	NA	NA
WP_155115092.1\|1550625_1550769_+	hypothetical protein	NA	NA	NA	NA
WP_004089308.1\|1550789_1551014_+	hypothetical protein	NA	NA	NA	NA
WP_004089306.1\|1551716_1552376_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_004089304.1\|1552488_1554381_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_011097597.1\|1554521_1555241_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_004089300.1\|1555237_1556251_-	glucokinase	NA	NA	NA	NA
WP_004089298.1\|1556247_1557681_-	glucose-6-phosphate dehydrogenase	A0A222YYZ2	Synechococcus_phage	2.6e-68	34.4
WP_011097599.1\|1558009_1559104_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	5.5e-26	32.4
WP_004089294.1\|1559248_1560052_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_011097601.1\|1560366_1560585_+	DUF1674 domain-containing protein	NA	NA	NA	NA
WP_004089288.1\|1560642_1561038_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_004089286.1\|1561034_1561418_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_004089284.1\|1561425_1563216_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_004089282.1\|1563236_1564022_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_004089280.1\|1564142_1564391_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_011097604.1\|1564413_1564794_+	hypothetical protein	NA	NA	NA	NA
WP_004089276.1\|1564819_1566061_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_011097605.1\|1566092_1566776_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.5e-34	37.4
WP_038231910.1\|1567123_1569601_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.4e-05	34.3
WP_004085189.1\|1569585_1570248_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_004089261.1\|1572450_1573470_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_082357549.1\|1573876_1574611_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	2.5e-51	40.7
WP_011097610.1\|1575473_1576031_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.1e-51	54.4
WP_011097611.1\|1576023_1576917_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	1.9e-69	46.4
WP_004090694.1\|1576916_1577255_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	5.4e-33	61.3
WP_004090695.1\|1577452_1577734_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	2.5e-15	46.2
WP_004085172.1\|1577744_1578020_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_004090696.1\|1578107_1578410_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_004090697.1\|1578412_1578814_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_011097612.1\|1578882_1579470_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_011097613.1\|1579466_1580009_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	2.9e-36	41.6
WP_011097614.1\|1579984_1580506_-	hypothetical protein	D5LGZ7	Escherichia_phage	3.7e-12	34.3
WP_011097935.1\|1580502_1580826_-	hypothetical protein	NA	NA	NA	NA
WP_011097616.1\|1580825_1581086_-	hypothetical protein	NA	NA	NA	NA
WP_011097617.1\|1581103_1582978_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	1.9e-159	47.5
WP_011097618.1\|1582974_1583607_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	1.6e-46	51.1
WP_080502611.1\|1583561_1584122_+	hypothetical protein	C8CLG0	Xylella_phage	1.5e-91	91.7
WP_011097620.1\|1584118_1584397_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.0e-45	98.9
WP_011097621.1\|1584398_1584707_-	hypothetical protein	NA	NA	NA	NA
WP_011097622.1\|1584791_1586210_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	4.4e-278	99.8
WP_011097623.1\|1586206_1586461_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	2.2e-31	81.2
WP_011097624.1\|1586450_1587470_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	6.2e-173	90.6
WP_011097625.1\|1588242_1588884_+	ParA family protein	A0A142F1W4	Mycobacterium_phage	9.1e-13	39.7
1598459:1598475	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2247049 : 2320996

Haemophilus_phage(16.28%)

integrase,terminase,transposase,tail,head,plate,tRNA

attL 2257223:2257238|attR 2322391:2322408

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004089732.1\|2247049_2248819_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_011097863.1\|2249136_2250654_-	fumarate hydratase	NA	NA	NA	NA
WP_038232051.1\|2252607_2254215_-	peptidase S41	A0A0R6PIZ1	Moraxella_phage	4.6e-05	29.7
WP_004089725.1\|2254372_2254693_-	hypothetical protein	NA	NA	NA	NA
2257223:2257238	attL	NA	NA	NA	NA
WP_012382580.1\|2258981_2259206_+\|transposase	transposase	A0A077SL42	Escherichia_phage	3.0e-16	61.9
2257223:2257238	attL	NA	NA	NA	NA
WP_004089718.1\|2259246_2259603_-	hypothetical protein	NA	NA	NA	NA
WP_004089716.1\|2259580_2259865_-	hypothetical protein	NA	NA	NA	NA
WP_004089715.1\|2259907_2260162_-	hypothetical protein	NA	NA	NA	NA
WP_004089713.1\|2260335_2260668_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	8.3e-18	40.7
WP_014607742.1\|2262784_2263789_-	peptidase	NA	NA	NA	NA
WP_038232954.1\|2264295_2265459_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	1.4e-08	32.7
WP_014607744.1\|2265462_2266023_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.1
WP_014607745.1\|2266019_2267165_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	6.2e-97	49.5
WP_004089386.1\|2267314_2267623_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011097871.1\|2267631_2267871_-	antitoxin	NA	NA	NA	NA
WP_011097872.1\|2268008_2268362_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	8.2e-24	49.6
WP_004090764.1\|2268358_2269000_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.1e-31	37.3
WP_004090766.1\|2268996_2269827_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	2.0e-76	51.1
WP_011097873.1\|2269823_2270141_-	hypothetical protein	NA	NA	NA	NA
WP_004090769.1\|2270140_2270911_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.9e-29	34.8
WP_004091353.1\|2270968_2271295_+	hypothetical protein	NA	NA	NA	NA
WP_004091355.1\|2271291_2271573_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	8.8e-13	51.4
WP_041572311.1\|2271631_2273026_-	hypothetical protein	D0UII2	Aggregatibacter_phage	4.1e-18	34.6
WP_155115098.1\|2273004_2273403_-	hypothetical protein	M4PML8	Vibrio_phage	1.1e-05	41.3
WP_004085005.1\|2273667_2274090_-	hypothetical protein	NA	NA	NA	NA
WP_011097876.1\|2274086_2274524_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	4.0e-44	61.7
WP_014607752.1\|2274533_2276030_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	4.1e-125	47.8
WP_012382589.1\|2276030_2276507_-	hypothetical protein	NA	NA	NA	NA
WP_004090296.1\|2276487_2276856_-	hypothetical protein	Q776V7	Haemophilus_phage	7.5e-20	39.3
WP_012382590.1\|2276842_2277322_-	hypothetical protein	M4SN98	Psychrobacter_phage	1.3e-08	28.0
WP_004085010.1\|2277318_2277690_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	5.2e-13	38.3
WP_012382591.1\|2277692_2277992_-	hypothetical protein	NA	NA	NA	NA
WP_012382592.1\|2278055_2279039_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	1.4e-49	39.1
WP_004090290.1\|2279048_2279531_-	hypothetical protein	NA	NA	NA	NA
WP_004090289.1\|2279540_2280749_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	2.5e-40	41.7
WP_004090288.1\|2280748_2281594_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.7e-30	34.2
WP_011097884.1\|2281662_2282001_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004090283.1\|2281997_2282279_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2
WP_011097885.1\|2282327_2283488_-	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	1.7e-54	39.2
WP_011097886.1\|2283807_2284668_-	hypothetical protein	NA	NA	NA	NA
WP_011097887.1\|2284680_2285865_-	hypothetical protein	NA	NA	NA	NA
WP_011097888.1\|2285861_2286707_-	hypothetical protein	NA	NA	NA	NA
WP_155115100.1\|2297293_2297440_+	hypothetical protein	NA	NA	NA	NA
WP_011097889.1\|2297555_2297798_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_011097890.1\|2297853_2299086_-\|integrase	tyrosine-type recombinase/integrase	T1S9J3	Salmonella_phage	1.9e-67	38.9
WP_004090279.1\|2299497_2301048_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	2.4e-112	44.7
WP_004090276.1\|2301037_2301397_-	hypothetical protein	NA	NA	NA	NA
WP_038233055.1\|2301486_2301723_-	hypothetical protein	NA	NA	NA	NA
WP_011097892.1\|2301700_2302162_-	hypothetical protein	NA	NA	NA	NA
WP_011097893.1\|2302151_2302481_-	hypothetical protein	NA	NA	NA	NA
WP_004089578.1\|2303172_2303511_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_004089577.1\|2303497_2303764_-	hypothetical protein	K4NX81	Burkholderia_phage	1.8e-07	40.7
WP_004090687.1\|2304778_2305189_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	8.4e-12	43.9
WP_011098061.1\|2305236_2305926_-	hypothetical protein	NA	NA	NA	NA
WP_012382597.1\|2305906_2306794_-	YdaU family protein	A0A0P0I481	Acinetobacter_phage	2.0e-18	44.0
WP_011097897.1\|2306790_2307579_-	hypothetical protein	C8CLG1	Xylella_phage	3.7e-117	84.1
2307210:2307225	attR	NA	NA	NA	NA
WP_004088094.1\|2307575_2308208_-	phage antirepressor	Q8HA44	Vibrio_phage	7.6e-20	48.1
2307210:2307225	attR	NA	NA	NA	NA
WP_004088096.1\|2308204_2308489_-	hypothetical protein	C8CLH4	Xylella_phage	4.3e-23	65.9
WP_011097898.1\|2308485_2308734_-	hypothetical protein	NA	NA	NA	NA
WP_004088102.1\|2308730_2308919_-	hypothetical protein	NA	NA	NA	NA
WP_004088104.1\|2308946_2309138_-	hypothetical protein	NA	NA	NA	NA
WP_004088108.1\|2309395_2309641_-	hypothetical protein	NA	NA	NA	NA
WP_012382600.1\|2309725_2310400_+	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	2.6e-18	32.6
WP_004088112.1\|2310450_2311062_-	cell filamentation protein Fic	NA	NA	NA	NA
WP_004088114.1\|2311058_2311247_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_012382601.1\|2311638_2312175_+	hypothetical protein	NA	NA	NA	NA
WP_004088056.1\|2312171_2312585_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_004088054.1\|2312581_2312983_+	hypothetical protein	C8CLG7	Xylella_phage	3.6e-68	97.7
WP_004088050.1\|2313214_2313493_+	hypothetical protein	NA	NA	NA	NA
WP_012382603.1\|2313515_2313707_+	hypothetical protein	C8CLG6	Xylella_phage	1.2e-16	75.0
WP_004088346.1\|2313727_2314072_+	hypothetical protein	U5P4J6	Shigella_phage	6.1e-16	46.5
WP_004088345.1\|2314111_2314933_+	DUF2303 family protein	K7ZMK3	Xanthomonas_citri_phage	2.3e-53	43.1
WP_004088344.1\|2314948_2315875_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	5.1e-57	48.1
WP_004088343.1\|2315871_2317524_+	hypothetical protein	U6C712	Ralstonia_phage	7.4e-91	39.3
WP_011097903.1\|2317552_2318317_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_004088341.1\|2318576_2319197_+	phage antirepressor	A4PE61	Ralstonia_virus	1.8e-18	44.6
WP_004088340.1\|2319263_2319710_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	7.2e-33	52.3
WP_011097904.1\|2319728_2319977_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	3.5e-37	91.5
WP_011097905.1\|2319976_2320996_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	4.7e-189	97.3
2322391:2322408	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2379126 : 2431803

Xylella_phage(41.03%)

integrase,terminase,portal,tail,plate

attL 2421768:2421783|attR 2433650:2433665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011097922.1\|2379126_2380320_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	5.1e-118	53.4
WP_004087359.1\|2381659_2382202_-	pilin	NA	NA	NA	NA
WP_004087360.1\|2382612_2382825_+	hypothetical protein	NA	NA	NA	NA
WP_004087362.1\|2383230_2384016_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004087363.1\|2384052_2386659_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	4.8e-28	22.5
WP_012382616.1\|2387091_2387823_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
WP_004087366.1\|2388870_2389785_+	hypothetical protein	NA	NA	NA	NA
WP_004084923.1\|2390557_2390902_-	RidA family protein	NA	NA	NA	NA
WP_014607780.1\|2391104_2391437_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	3.5e-16	38.9
WP_014607781.1\|2391628_2392711_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	1.3e-91	45.3
WP_004088371.1\|2392701_2392920_-\|tail	tail protein	A0A1W6JT40	Escherichia_phage	2.1e-14	51.4
WP_011097928.1\|2392916_2393399_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	2.6e-28	46.8
WP_011097929.1\|2393395_2395615_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	2.8e-93	44.1
WP_011097930.1\|2395741_2396029_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	3.1e-13	44.6
WP_004086986.1\|2396031_2396541_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	5.3e-48	52.7
WP_011097931.1\|2396540_2397719_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	8.3e-137	56.1
WP_012382617.1\|2397783_2399376_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	7.1e-83	36.1
WP_004088361.1\|2399383_2399893_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	2.4e-48	54.5
WP_011097611.1\|2399932_2400826_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	1.9e-69	46.4
WP_004090694.1\|2400825_2401164_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	5.4e-33	61.3
WP_004090907.1\|2401313_2401577_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_004090909.1\|2401563_2401845_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_011097612.1\|2401881_2402469_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_011097613.1\|2402465_2403008_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	2.9e-36	41.6
WP_011097614.1\|2402983_2403505_-	hypothetical protein	D5LGZ7	Escherichia_phage	3.7e-12	34.3
WP_011097935.1\|2403501_2403825_-	hypothetical protein	NA	NA	NA	NA
WP_011097616.1\|2403824_2404085_-	hypothetical protein	NA	NA	NA	NA
WP_014607782.1\|2405961_2407560_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	7.0e-131	50.9
WP_004088901.1\|2407556_2408108_-	hypothetical protein	V5YTG8	Pseudomonas_phage	1.2e-40	52.3
WP_004088899.1\|2408111_2410064_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	9.2e-250	63.3
WP_004088896.1\|2410056_2410590_-	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	5.2e-46	58.6
WP_012382622.1\|2410762_2410987_-	hypothetical protein	NA	NA	NA	NA
WP_011097939.1\|2410988_2411450_-	hypothetical protein	NA	NA	NA	NA
WP_011097940.1\|2411439_2411751_-	hypothetical protein	A0A172PZR6	Pseudomonas_phage	7.0e-19	44.0
WP_011097941.1\|2411761_2412256_-	lysozyme	A0A2I7RLY1	Vibrio_phage	1.7e-27	50.3
WP_014607783.1\|2412222_2412840_-	hypothetical protein	V5YTF6	Pseudomonas_phage	4.0e-26	52.2
WP_014607784.1\|2413252_2415781_-	primase	C8CLH6	Xylella_phage	0.0e+00	75.4
WP_014607785.1\|2415916_2416483_-	hypothetical protein	C8CLH5	Xylella_phage	4.9e-95	93.1
WP_082357556.1\|2416479_2416791_-	hypothetical protein	C8CLH4	Xylella_phage	2.0e-37	83.5
WP_012382627.1\|2416970_2417216_-	hypothetical protein	NA	NA	NA	NA
WP_011097950.1\|2417276_2417525_-	hypothetical protein	NA	NA	NA	NA
WP_012382629.1\|2417521_2417710_-	hypothetical protein	NA	NA	NA	NA
WP_014607786.1\|2417763_2418330_-	hypothetical protein	NA	NA	NA	NA
WP_014607787.1\|2418319_2418520_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_041572312.1\|2418593_2419364_+	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	3.3e-33	41.3
WP_014607789.1\|2419397_2419994_+	hypothetical protein	NA	NA	NA	NA
WP_011097955.1\|2420171_2420561_+	hypothetical protein	C8CLG9	Xylella_phage	1.4e-08	40.2
WP_014607790.1\|2420557_2421028_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_004087232.1\|2421417_2421609_+	hypothetical protein	NA	NA	NA	NA
WP_014607454.1\|2421632_2421824_+	hypothetical protein	C8CLG6	Xylella_phage	1.1e-17	78.1
2421768:2421783	attL	NA	NA	NA	NA
WP_041572296.1\|2421855_2422053_+	hypothetical protein	C8CLG5	Xylella_phage	5.9e-24	90.6
WP_014607456.1\|2422039_2422537_+	hypothetical protein	C8CLG4	Xylella_phage	3.9e-48	90.1
WP_014607792.1\|2422533_2423811_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	7.4e-232	94.3
WP_004090881.1\|2423810_2424377_+	DUF2815 family protein	C8CLG2	Xylella_phage	8.3e-103	97.3
WP_012382638.1\|2424367_2425975_+	hypothetical protein	C8CLG1	Xylella_phage	1.2e-186	71.0
WP_011097961.1\|2425976_2428157_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	99.9
WP_011097962.1\|2428153_2428432_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-46	100.0
WP_012382639.1\|2428433_2428880_-	hypothetical protein	NA	NA	NA	NA
WP_011097964.1\|2428964_2430383_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.3e-274	98.7
WP_011097965.1\|2430536_2430794_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	4.7e-37	87.1
WP_011097966.1\|2430783_2431803_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.8e-172	90.3
2433650:2433665	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2474060 : 2485774

Aggregatibacter_phage(25.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004087352.1\|2474060_2474936_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-08	25.5
WP_004087353.1\|2474932_2475910_+	hypothetical protein	NA	NA	NA	NA
WP_004087355.1\|2476168_2476615_+	hypothetical protein	NA	NA	NA	NA
WP_038233088.1\|2476718_2477963_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	1.5e-08	32.7
WP_014607744.1\|2477966_2478527_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.1
WP_014607802.1\|2478523_2479669_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	7.4e-98	49.7
WP_004089252.1\|2479767_2480064_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.3e-26	58.1
WP_004089254.1\|2480067_2480373_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.1e-11	43.6
WP_011097986.1\|2480383_2480737_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	8.2e-24	49.6
WP_004090764.1\|2480733_2481375_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.1e-31	37.3
WP_004090766.1\|2481371_2482202_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	2.0e-76	51.1
WP_011097873.1\|2482198_2482516_-	hypothetical protein	NA	NA	NA	NA
WP_004090769.1\|2482515_2483286_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	2.9e-29	34.8
WP_004091377.1\|2483396_2483624_+	hypothetical protein	NA	NA	NA	NA
WP_011097988.1\|2483607_2483874_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	3.4e-14	43.9
WP_014607803.1\|2483884_2485774_-	hypothetical protein	D0UII2	Aggregatibacter_phage	1.7e-22	27.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017561

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017562

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection