CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014552	Mycoplasma fermentans JER, complete sequence	2 crisprs	NA	0	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014552_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014552_1

256695-256808

Orphan

Consensus_repeat	Method
TGAAAAAAAGTGGTCAAATGACCAGAAATTTTCAATAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014552_1

>merge|NC_014552|1|256695-256808|CRISPRCasFinder
TGAAAAAAAGTGGTCAAATGACCAGAAATTTTCAATAGAAATGGTTAAAAATAGCAAAAAGCGAAAATTCTACTGAAAAAAAATGGTCAAATGACCAGAAATTTTCAATAGAAA

>NC_014552|1|1|256695-256808|CRISPRCasFinder
TGAAAAAAAGTGGTCAAATGACCAGAAATTTTCAATAGAAA	TGGTTAAAAATAGCAAAAAGCGAAAATTCTAC
TGAAAAAAAATGGTCAAATGACCAGAAATTTTCAATAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014552.1\|WP_013354494.1\|263060_264854_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|372554
NC_014552.1\|WP_013354489.1\|256841_258092_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_014552.1\|WP_013354492.1\|260621_261302_-\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013354488.1\|255265_256630_+\|peptidase-M17	unknown	unknown	gnl\|CDD\|376407
NC_014552.1\|WP_013354479.1\|241935_242820_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376324
NC_014552.1\|WP_013354495.1\|264991_266491_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NC_014552.1\|WP_013354487.1\|254697_255174_+\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013354484.1\|249699_250911_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_014552.1\|WP_081439139.1\|258380_258560_-\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|372554
NC_014552.1\|WP_013354481.1\|244187_245171_+\|aquaporin	unknown	unknown	gnl\|CDD\|223653
NC_014552.1\|WP_081439140.1\|259126_259711_-\|DUF4143-domain-containing-protein	unknown	unknown	gnl\|CDD\|379306
NC_014552.1\|WP_013354486.1\|252023_254675_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226967
NC_014552.1\|WP_013354483.1\|248619_249696_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_014552.1\|WP_013354480.1\|243061_244099_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NC_014552.1\|WP_013354497.1\|267678_268776_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_014552.1\|WP_013354493.1\|261624_262812_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341158
NC_014552.1\|WP_013354496.1\|266623_267511_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NC_014552.1\|WP_158303397.1\|258556_258715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372554
NC_014552.1\|WP_013354482.1\|245803_248590_+\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013354485.1\|250915_252031_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521

Protein	Function_ID	Function_description	E-value
NC_014552.1\|WP_013354494.1\|263060_264854_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	2.51341e-30
NC_014552.1\|WP_013354489.1\|256841_258092_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.24068e-61
NC_014552.1\|WP_013354488.1\|255265_256630_+\|peptidase-M17	gnl\|CDD\|376407	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase.	1.02209e-137
NC_014552.1\|WP_013354479.1\|241935_242820_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|376324	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.	1.17187e-45
NC_014552.1\|WP_013354495.1\|264991_266491_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NC_014552.1\|WP_013354496.1\|266623_267511_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.08416e-43
NC_014552.1\|WP_013354483.1\|248619_249696_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.08234e-61
NC_014552.1\|WP_013354484.1\|249699_250911_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.69216e-50
NC_014552.1\|WP_081439139.1\|258380_258560_-\|leucine-rich-repeat-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	0.000160518
NC_014552.1\|WP_013354481.1\|244187_245171_+\|aquaporin	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	2.83308e-05
NC_014552.1\|WP_013354486.1\|252023_254675_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	3.97495e-64
NC_014552.1\|WP_158303397.1\|258556_258715_-\|hypothetical-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	0.000424833
NC_014552.1\|WP_013354480.1\|243061_244099_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	4.12346e-169
NC_014552.1\|WP_013354497.1\|267678_268776_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	7.73746e-06
NC_014552.1\|WP_013354493.1\|261624_262812_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341158	cd17269, RMtype1_S_PluTORF4319P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Photorhabdus luminescens S subunit (S.PluTORF4319P) TRD2-CR2. The recognition sequence of Photorhabdus luminescens S subunit (S.PluTORF4319P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.20351e-78
NC_014552.1\|WP_081439140.1\|259126_259711_-\|DUF4143-domain-containing-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	2.17593e-18
NC_014552.1\|WP_013354485.1\|250915_252031_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.10044e-144

>NC_014552.1|WP_013354488.1|255265_256630_+|peptidase-M17
MSNLYQTKRDDNILLKAYYEANKNKEIKIDQLNYKTGKITEFLNKKEAYIFLDKNFKNYDQLVDLIDTKIVTKNRNYQIDLESFVNKDFPIESVLKAFYSRIIFYTYNYFNKKKEAPKKNQYTFLLKDNSHKELANKFELIANNRNLVRNLQVMPENFCNSEQLAQYIVNDFKNEKDLKVTVLNKKEIEKLNMGLIISVNKGSTHEPRVVIVEYNGDPNSKEKIVYVGKGITFDTGGMNTKGYHMEGMKYDMSGSVIVAYTVKTLAQLKAKKNVAAIMCITDNRQDGDASLPENVYESMSGITVEVTDTDAEGRLVLADGLYYGAKKLNATTLVDVATLTGAVLRALGTVYSGIYSTDEKNWKIFNQAATNAKEKVWRMPLHEDFHEPNTASIVADLNNYNNDEKSDCNTAAMFLKQFTNDVPYIHCDVAGTADLSGKPQGVLVDTLVEFALLK
>NC_014552.1|WP_013354487.1|254697_255174_+|hypothetical-protein
MNSTREYFREAFTWKKLLHLFIILLISLIAGVSLYLYRTYKTEIPYKTNVSDTLLLIGAILLAYSIVIILVTLGFGTALFKNLRNNSLTRTKNELEAEKRKPASEEQRAKIKVLEKEIERKTRKIEASENKKINRFIYYLMLIIGSILLISSAIVGYM
>NC_014552.1|WP_013354486.1|252023_254675_+|ATP-binding-cassette-domain-containing-protein
MNKNIVLDIKGLKKYFTNNGITNKAADDITFNVHEGEIVGLIGESGSGKTTVGRSLLRLYDDFNGFVTLDGKIVSGARISRKQRKHLRRNIQMIFQDPHAALNGQKNIYSTLKEPLEVNGIIKERIQDIFKDWFDIKENFFYVFKQRALELKLKNLESINLLAEKFFPYWIEKFKKMNYDQKLDIEDNFNNFYNYLEEKQNMESEIVDNMYSNTDNLINFYFEKQKDYRSGNLDFDETKLIKAKSNYEEILELTKISKQLYEAKLQLAEKSKELKELIKNYKERVNDNKNSFKNFIAEYKSEARIFKVTRLTSYDLDFYLFNYKNELINKKIVKEISLIKPNLKFIEYHKVCDLIEDLKIYSKEFFEKYLTPIKYQRNVIKIVEKTIKDNFKFIYEKYSLLNQQEKDSHEKEVATLKEEIKKIKSLLKEKQEPSKTAEDLEKAKQNLDKVNKFHEEEIAKYVEKNKLEIDEIQRNIKEQSDKYNSLKSQQSIIDSEFNRVKDIFFNELNRVIDETKKVNTLENKAKVKELTKIKSIFKTKIYDKLNTLKSFNIEVKYLNKDINDIKKLLGIKNSKMIKVFGNKVGKFIQKHFARFYYHHSISNLLTKTTIYKALEDVGLLKQFAYRYPHEFSGGQRQRIVIARALIIQPKVIVADEPIASLDISIQAQVVNLLKDLCDKKNIGMIFIAHDLSMVEYIADRVQIMHLGKIVESGDTEAVYNKPMHPYTINLFKAVPKISNANEKFENVSFELDYLKGQVYPNVPQLYRVENNHYLYGTESQVEEWVKPFNINSFSLATNKSIDEEYNSKIDHKPYDGHSEIPNNIEYTDEIKIDEPTCEIKISSNFDFSKPIVEVVETKVSTTKTTKKRSTSRKASSAKKTTKK
>NC_014552.1|WP_013354485.1|250915_252031_+|ABC-transporter-ATP-binding-protein
MTSVKEKKNIKKRNEDIKAEKLANDLLLKVRNLRVDFKVGRNKYLRIVRGIDLDIFKGQIVGLVGESGSGKSVTSKSLINVNEGATTTADFMQIEDINLNKFKKERQWQSIRGTYIGYIPQDPLTSLNPTRKIGLQLLDALNLNKEWKGKSYKDKRAYLVGLLDKFGIRDSEQVFDRYPHTLSGGMKQRVVITMVVALKPSLIIADEPTTALDPTVQASVLALFEKIHQEMNISIILISHNISVVAKFCDYIYVMYAGRIVEKGTRKEIFTDPCHPYTWALISAIPENSQSRLYSIKGTPPDMANLPLGDPFAPRNDYALEIDFYKEPPLIEVSETHAAATWLLHPDSPKVERPEELEYRLKSFRKVFKDE
>NC_014552.1|WP_013354484.1|249699_250911_+|ABC-transporter-permease
MDSRTFNDKYNISDELIQKIKLAEKEKKSTNIVGKPKILFYEICKRFFKNPVVLISFTAFIALLLTGIIVTLTSPYSPTGSILKGGDELTQNLPPVFSPVITNASNYETFQRMKEWEGYHYIEPYLKDVIVNSKEKLLIYNAYDFWKAYYIWSRALKINPLRPEDIENIKASMPHLNTLFGTTVKEADIWTGAWFGAISSIKVALIVATIEVVIGVAVGAILGFHAGKWLDTVMMRVIEIFQAPPSVIWLLLFISAAGTSEWVLIAGLLFVGWTWPIGATRMFIITVKDEEYIIAAKSVGASTSRQIFFHALPAILGKIAMNYVRRIPSIILSIASLAFLGFYNKDTDINLGKFIYDNINDAKTNPWLMWLPTLILLTLSVSLQFIAIGLHDALDPRVIKVKG
>NC_014552.1|WP_013354483.1|248619_249696_+|ABC-transporter-permease
MVKYIFKRIAFAILTLFIIIIFSYSIIIAFQQNPYRIAALEEGLSKLEVQQKLQQAEEFDQTPGIVKLFNYLINIFQFNYGEVYVYKSEYETIPEMFFEPLQWTILISLPAFVISAILGVAIGVLAGYKRGTIWDTLINIFIFIFVAVPSFVLAPFFLNIFNKLGFGRTFVSPYETDSSWAKTIKSIIPPITLLTLGSLSVYTLYSRNQVITVLTSNYILIAKTKGLSGSKIFFKYVFRNISIPLAAIIIPSYIGLLSGSIIIERFWLVKGTSDLIVNAFPKGETNIVMFNILFFTTLSLFTEVLVDVTFTLIDPRIKYSKSGGINWFEVIRASRFRRKAEKELFKQQDQELLMKGAN
>NC_014552.1|WP_013354482.1|245803_248590_+|hypothetical-protein
MNKKRRLLWSFAPLATLAAFAPVAISASCGRKGRVIPNLDLIKGQTNWSVVNSKYTEDSYTTDLSTTYGGFLNRLKEETGAYLLTTRSFGNCKIVQAGPKGHERKFVKSPSYWRYSLEYADAVVVTKADGTEAVFDSDEAELKQTPEHPEDKAKNIPAHFDLANYHARSANARSVNSAEFEKALKGAKKIQLRVRKGAKWVDSLGNETKYDVVGDDFYISWLRTYTLSTGVRNSYLKGTKYEDKVAELDKLASGMLSKATKNFTNALRYPNQYLYGLYGVDSNKFKNRSEFLTEKDGREFINFTQLAGKEDITSFQDLLYNVATSKDFVAAPSQYIKETMNSPKISVWNGKNGSKSKSNLLSALSELPEDNLLRVAGVYTYGASEKDMLYAGRYFSAGYYPEASEYRFYKNRFYFDKDFVESEKNFGRVVTKYYSTTEDVFVAQIFDLYQKGKLHTLSFAQLNQQQQLDVTKNPQKYGLEYRQSLNKLNSPFKLLFNTIPYGKNFNADTKNRFLNVHAAKLFYGLTDNQVHNGTTQEETNEDLYVNMLSGRSVAFRSLLTAAVNWNAVANTLSNNKTKPWLAGVAPHGKIGGSDQDTTAAAKRPVDDYENLNTFYTVDSNGEIGITVTPTENATIANTASTTEEKYKSAKFNEVKAAIKKILDDYEATLPAGEKLEVEWTVPNRYINWNPSNMEKVFKSLESLIKSIDPRLKPSYKKFESSESDKAKWGDSLFGGSIAKIISWGYDIDNIGSGIDGITNSGFIGALFSIGTSAKLQNKLQKAFPTLVQASKELVEFALKSENNFKFGFNLHDFNKIPTKFSNDLAENLHHLKWDSKENKFVFDEKENFTMSSVISSQFFVSYVKKHTNAQVLTLTKEIMNYMGVVVDPAKTIANENFGPTLINSEYYEVPFAADNNLWLADIIVKNVK
>NC_014552.1|WP_013354481.1|244187_245171_+|aquaporin
MFNYFNLKNRQAAVQPTKAIHWFSHLFSELIGTIWISLGLAGLSIIIKDKVVEHYLLHNVIVGFFAGFVVVGSCLIFFGRWSVDLNPVVTLYRWFNGTNKTGYVMAKLAMQIVGGILAGLIIYGIGHNASGIKFEANYLANATDTAHKANHYISAHNVSAKSFMPNFDSAFAKEAVITKKTIWSGGVWIFFGEMVLGAILLFPIFSPRLDNKYRDTFICFIISFDVWMGILLGSAAINPVRGLAQQVPTLFFDMKHLSAMAQYDIHMGTWAMVLGNLMSPVFHAFMQGFTEKYGNPALLWMLNYKNNKASHYVKETQTKEESVKKNN
>NC_014552.1|WP_013354480.1|243061_244099_+|2-hydroxyacid-dehydrogenase
MKIAFFDAKEYDKKYFDAVNNGRHEIKYFDENLNINTVTKAKGFDAICAFVNTYGDKYILELLAKMGVKVWLQRSMGYNKIDLTKAAELGISVFRVPNYSAESVAEFAAGTLLALNRNIVKAEKLVSKYNFSLNGLDGKAIHGSTVGVIGGGKIGQCFIRIMKGMGARILVFDAYNQKHFPNLATELGFEYASFTKVLKESDFISLHAPLLPSTTHLIDKDAVKIMKKGVILVNTARGELIDIPGVLYGLKKGIIRGLASDVLEREEGRFYQDISSEANEYKKNDPEWEELISNENVIITSHQAFLTDVALTQIAKITLENADMAQNKDFSKALVIMENGKVKNG
>NC_014552.1|WP_013354479.1|241935_242820_-|PTS-glucose-transporter-subunit-IIA
MGFVSWIKRVFGRKDNKQKIKEVRKLVEISQLTRDIVNAMGGIENITGFNNCAVRLRYDVKDTSLVNEEALKKVGASEVIFIGKRHVQAKFGEISEKLNLDIQEAAPFLEEEALKNKKIEVKSDVNLFEEKPVEVKKTVDENIVYTPCKGTRKSIEDLSDQTFSLLGCGYAIEIDKKLNKLEVYAPINGKLIMSYPTKHAYGIANDNGLEVLVHIGIDTVKLNGLGFETNLKQNDKVERGQLLATVDLKKLRNSKICSDVIVLITDNVNKNKQTKLLCPLEIKEVNVPWFKMVD
>NC_014552.1|WP_013354489.1|256841_258092_+|ATP-binding-protein
MEIKRDFYLNKLINKKHNKLIKIVTGPRRVGKSYLLFNLFYHHLLLEGVKNDQIIKIALDSIENEHLRNGKVLFDYVLNFIKDENKYYYVLLDEIQYVSKFIDVLNGLMKRENIDIYVTGSNSKLLSSDIATEFASRGDEVRIYALNFQEFKSINLNKDNEQLWKEYCEFGGMPNTVLNENSEEKENFLQNLFQNTYMNDVILRYKLRNKEFLNEIITFLANNIGSYINTNKIFNYFKSLKKTNISYNTISKYLDYFNEAFIIEKANKQSVKSYEVFKSLNKYYFVDLGIRNFLTNISSKDEGHIMENIIFLELKRRGFKVSVGSLEKRELNSKNEYIRKEFEIDFIAKKKNQTYYIQSCLNLNESNEEREKIPLKMLEDAHRRIIITKDAFTYKTDNYGIETINLFGFLLNDNIF
>NC_014552.1|WP_081439139.1|258380_258560_-|leucine-rich-repeat-protein
MITIKQGNFKSLDSITEINIPSIVKIIEKYDFRGCNNVKKINIANGVQKINSQFLKANN
>NC_014552.1|WP_158303397.1|258556_258715_-|hypothetical-protein
MDFVNTIETIGKQAFRNTKLKGDLVLPTYLKDLGEWTFLNTKFTSLKIIIII
>NC_014552.1|WP_081439140.1|259126_259711_-|DUF4143-domain-containing-protein
MEYENENINIKTINNYFKTAESLYLIENQTYFKPNFLSSNYVLNSEKIRFIDPSIPAGILKLSPQLLNETKNTLGVYFESLVIRDLRIYSQLIDVEVLFYRNKWGQEVDCILKTEQGDYAAIEIKLGSMQEAGAIENLRKFRDSMIKEASLAKNESEKQYKKVPKWLIVISGTGDKSYVTKDNIYVIPFKCLYE
>NC_014552.1|WP_013354492.1|260621_261302_-|hypothetical-protein
MAKAVYFSDLNLTKVKFPNNINKDLIARVAHKLDDICEEMCNQKSEISFYVEKTFPFGQKMLAIVDDTLAYDFNIILKPKKTINLESVDFNKYVLEKLQKHICPLGFSTKIVENSKSFNLKFTDFKNFSIDIALYSENKNNERFVLVRSKDKANKIVYNWAKVYDYEYTGDKVTEIKKYDRIWKETKELFLKKSEKNPDIDNFSHKTAFNLAVDAVYSVFKKYNNF
>NC_014552.1|WP_013354493.1|261624_262812_+|restriction-endonuclease-subunit-S
MSYLQKLLDKYCPNGYEWVKLENIATFINGLKCKTKKDFLDGNEHYVSYLNVFNNQEIDFLPTSKVKISNNENQNCLQIGDVIFSGSSENFEETGYASVFNLISENKIYLNSFCFAIRFNNKNLFLPKFSKYLFNSEIFRNQLVKCINGVTRFNLSKVKFASIKVPLIPLKIQEKIVEILERFRILEAELKAELKAELEARGKQFNFWLKKIYGNIDSKYITKLENLDINIETGKLNANKKNENGKYLFFTCDEKPYRINEYAFDAESILISGNGSKLGHISYYEGKFNAYQRTYVLTSKDVNINLKYLYYFLKHNFKDYISSIHFGSSSVPYITLPILQEYKLKLPPLEIQNKIVSILDKLSEYSQEINSGLPAEIELRSKQFKYYRDQLLDFK
>NC_014552.1|WP_013354494.1|263060_264854_+|leucine-rich-repeat-domain-containing-protein
MKKIKLLTILPTAAIALPFSVMSCDGGGQENNSSTTTKLDLSAELNSVVVEYDGNKSILKPSEVKVEKIRITGFGSEYEVEPNSINLVPHDDKGTLEVTFKLRQKNLVSNVQSKTVEIKNFLNSSGNVDKYKGYEHLVIENDIVKGAKSIPAGGILEIPDGVTSIAAAAFSFKAGNLNTVVGSSVTKNQITRVIIPDSVTTIGAAAFAENVNLESVVMSKKVNKISEALFEGCVRLKTINLPNEIDTIGNYAFLRCKALTKIDLPKNLTSLGSSIDLTAAKTFQGTGLTEITIPANVKMIPTSTFEGCESLSKVTLNSKLEKVSWAAFKGCTSLTEINLPENVKFIGKHAFLNCSNLAKVEMKNKVTEIKEGAFENVTALKNITLSTALTTLSKEAFKNSGITTIALPANLKAIEEGTFENCTALTKVTMGNNITAINSKAFYNCGVLNSINLSTSLVKIQNNAFENTTNLSVVTFPTTITLIDNGAFKNSGLVTLTVPGTLSNVEPESFMNCKKLTTVTFGTGWDNKDIKSKAFYGCDVLTTVTFASKVKNILKEAFFACPLLKEVSIHKGTDWKTGLMNKNKAFDETITTVKVIN
>NC_014552.1|WP_013354495.1|264991_266491_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MKRTILVVIDGLGLREEKQGNGFKLAKTPTFDKLFKEYPNSILQASGEYVGLPKGQMGNSEVGHLNIGAGTVVYTGLSLINKAMKDGEFEKNKTFNEVFADVKKKNSTLHLMGLLSPGGVHSLEDHLFKLIDMAHAYGLKKVSVHAFGDGRDVAPKSIITSLRKLQTQVDKYGYKIASIGGRFYGMDRDKMFDRVEKHYEALLGNSDHTYESVIDYVNSQYDEDITDEFFIPAIDKGANFVKDNDSIIFFNFRPDRARQLTHLFIGSKLYDNKPKHPVKISKFCSMMKYEGINTLVAFSEMEVKMPIGRVLEKAGKSQLRVAETQKYAHVTYFMDGGNDIEFKNSKRIMVPSLKVESYANAPHMSAEGITDELTKNVLDYDVTIMNYANPDMVGHTGNLKSTIEAVSFLDTQIKRLWDWASKNDVTIFITADHGNAEITEDENGKPATKHTSSPVMFICTDKNIKLANGKLANVAPTILDYIGVKQPKEMDEKSLLIRK
>NC_014552.1|WP_013354496.1|266623_267511_+|Cof-type-HAD-IIB-family-hydrolase
MKNNNKLIKRVCFSDVDGTIYGFPNKELKNEVVNSVRKAKEENDVEFVITTGNPANEKIKKLAKIMGSRYISTAGGASVFDLEKDDYIHLELMDKKEAQKIFDLSKKHPDFVHLYYFGKHQFYLYNPSKEMEEFLSEFCEYYDWNKSGEINQDLHKIELFGTSDEIKKAYEELKKLKLKLKVIYFGTHIEITPKGVDKGYGLKWICENIFNCNFDYVMSIGDSENDIAMFEASGYSYAMDNAKEIAKKAAKYYTSDVEQNGLGEAINDYIFRTHLLLEKQNLEQKLDKQKAKRKY
>NC_014552.1|WP_013354497.1|267678_268776_+|hypothetical-protein
MNYYNDFDMNQQPKAKFWRPNEWNASLVQPKKWWYFGVIGPIMALMLVMIILGSYFIAQPDNGSGKNVETYICLIFFGVYGFIITLLLMIYFLILWLGKSQQAFKAAKVFFIMTLILFPFLLIWCSVLNSRMDPPEPEEVFNPYSAANGYGFNPAWASQTRTFALTGQYTGSYAAQPQPQQTQQFGPQPNPQATGMFNVPPRGPQFGPQPNPYAQQQSGMFNVQQRPWMFNVPPRGPQFGPQPNPYAQQQSGMFNVPPRGPQFGPQPNPYAQQQSGMFNVPPRGPQFGPQPNPYAQQQSGMFNVPPRGPQFGPQPNPYAQQQSGMFNAQPQNPQPNPYGQPNPQDSGMFQDPNGQDFGGFDPQGN

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Crispr_ID: NC_014552_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014552_2

752307-752391

Orphan

Consensus_repeat	Method
AGCAATATTGCAAATGTTTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014552_2

>merge|NC_014552|2|752307-752391|CRISPRCasFinder
AGCAATATTGCAAATGTTTTAAAGATTTTACCTATTTTTATATACTTTTCGTTAAAAAAATAAGCAATATTGCAAATGTTTTAAA

>NC_014552|2|2|752307-752391|CRISPRCasFinder
AGCAATATTGCAAATGTTTTAAA	GATTTTACCTATTTTTATATACTTTTCGTTAAAAAAATA
AGCAATATTGCAAATGTTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014552.1\|WP_041593949.1\|762611_764225_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_014552.1\|WP_187322835.1\|758803_758956_-\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013527068.1\|756815_756998_-\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013354888.1\|757558_758686_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_014552.1\|WP_013527062.1\|750138_750306_+\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_015511099.1\|757004_757217_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379049
NC_014552.1\|WP_013354877.1\|742675_743515_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NC_014552.1\|WP_013354889.1\|760153_762310_-\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NC_014552.1\|WP_013354886.1\|753372_754419_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_014552.1\|WP_183142947.1\|742171_742582_+\|AAA-family-ATPase	unknown	unknown	unknown
NC_014552.1\|WP_013354883.1\|750375_750882_-\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013354878.1\|743507_744347_+\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NC_014552.1\|WP_143715668.1\|757192_757417_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379049
NC_014552.1\|WP_013354884.1\|751003_752263_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_014552.1\|WP_013354882.1\|749134_750037_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_014552.1\|WP_013354881.1\|747332_749057_+\|excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|223399
NC_014552.1\|WP_013527071.1\|759487_759817_+\|hypothetical-protein	unknown	unknown	unknown
NC_014552.1\|WP_013527060.1\|744912_746979_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377418
NC_014552.1\|WP_013354891.1\|764236_766903_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NC_014552.1\|WP_013354880.1\|746987_747329_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245

Protein	Function_ID	Function_description	E-value
NC_014552.1\|WP_013354889.1\|760153_762310_-\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NC_014552.1\|WP_013354888.1\|757558_758686_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	8.24718e-30
NC_014552.1\|WP_013527060.1\|744912_746979_+\|hypothetical-protein	gnl\|CDD\|377418	pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.	0.00015474
NC_014552.1\|WP_013354877.1\|742675_743515_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	3.92896e-35
NC_014552.1\|WP_013354886.1\|753372_754419_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	3.25393e-19
NC_014552.1\|WP_013354891.1\|764236_766903_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_014552.1\|WP_013354878.1\|743507_744347_+\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	3.8932e-126
NC_014552.1\|WP_143715668.1\|757192_757417_-\|AAA-family-ATPase	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.66379e-07
NC_014552.1\|WP_013354880.1\|746987_747329_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.6709e-16
NC_014552.1\|WP_041593949.1\|762611_764225_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_014552.1\|WP_013354881.1\|747332_749057_+\|excinuclease-ABC-subunit-C	gnl\|CDD\|223399	COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair].	2.82255e-118
NC_014552.1\|WP_015511099.1\|757004_757217_-\|AAA-family-ATPase	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.02488e-06
NC_014552.1\|WP_013354884.1\|751003_752263_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	9.72452e-59
NC_014552.1\|WP_013354882.1\|749134_750037_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	5.69505e-109

>NC_014552.1|WP_013354884.1|751003_752263_-|ATP-binding-protein
MNKVIKRDNYLNMLIDKINNKKIKIITGIRRVGKSFLLFNLFYSYLLANKVEADQIITIKLDRVENEELWDRQKLYKYIKDRIVNDKQYFLLIDEIQNVKKFELVLNSFQDQDNIDIYVTGSNSKFLSKDIATTFAGRGMEINVLPLSFQEYLNFSNLDINEAWNLYSLYGGMPEVVLVDKENEKKQILKDLLTNVYVNDIAERHKLNSTQDVLNIVEYLASIVSSQCNSSRIANSFNSLNNKKTSTYQIDKILDALEDSFLIDKIRKYDIKGLKLLSGQYKYYFVDNGLRNVALNFRNLGQGQLIENAFFNALKINYFDISYGAINQKNNINNQWINNQYEIDFIAQNFNTKVYFQVTTSLNNQEVKERELRPFFLTNNNFRKVIVDYSEKNNWIDQDGITHVSLLSYLENPDIIKEF
>NC_014552.1|WP_013354883.1|750375_750882_-|hypothetical-protein
MEEQLSIIDKIKKLSWIAFAANIATIGIGALASWLNLRNRDTTTNANTFVSTTQIVIYAAIIIIPLIFALVLKSFIFKATFNDERVITYYHMDCFYPRWRGSSIIAWGSVKWVIFVYFMKLVVNFILVCLIYLIGLFLFPLTYFKCKNYETDLKNNVKFNVDLYGEAK
>NC_014552.1|WP_013527062.1|750138_750306_+|hypothetical-protein
MLSREYYTFNNINCIKDYTKNIHLIILDDPDSEWISNNYFRNKVHIIFKSEGGKF
>NC_014552.1|WP_013354882.1|749134_750037_+|glycoside-hydrolase-family-1-protein
MSFSKKFLWGTAFAANQIEGAYNEENKGLNVQDVLPKGALGHIDLNLKEFNIKRKAIDFYHKYQEDLDLLSEMGIKVLRISIAWSRIFPKGDESKPNQKGLEFYLKLFKELKRRKIKTIVTLCHYEMPLHLALKYNGFSNKKVVKYFLKYAKVVLKYFNKYIDYLVAFNEINSLLHIPFCNGGIYKNQEDLNILYQATHNMLYASAKVKEMIKNNYNHIQVGSMVLAMPFYTKSAKVEDQILKMEKEWQNLYFTDVLARGVYPKYLDNYFLKNNIKINKTKEELEVIKNNIVDYIGFSYC
>NC_014552.1|WP_013354881.1|747332_749057_+|excinuclease-ABC-subunit-C
MTKEEIITSLKNVSTAPGIYLWKDKNDQVIYVGKAKNLRKRMHQYFEGAINSYKTSRLVEEIRAYEVFICKTNKEALLLEKLYIDKYNPEYNILLLDDRRYPYLKVQLSDRGLDISLSRKIGKKNETNKLFYFGPFPIGYGSIQILKLLEREAFYEKGLKIKNNDPKFWQEKFNKIKSILSFKDNSYINEIKEKMFKEAEAEHFELARDLKLSWEYLKKLNEEQIIELKDIHNLDVFAYKTVDNIIYMTILFYRSGLLINKDNQALNIDIDEIETLEKFFNKYYENKIKPDEILVEEKINNLNLNLDENLNIVTPKIGDKKRVLEIAQLNLEEYFSKEHLLIKNKNDHALLMLEEFKKLIKIDSLKNIILFDNSNLANSNPVGVAIVYSNGLKNKNLYRKFNHIDIYSREADVEYMKESIKKYFSSADNKKDFDLIIVDGGLAQIHEAKKVLFDLDIKIPIVGLVKDDFHRTRALIDLQENLVKIKNKDLLNFLASMQIEVDRFAKSHLRNRNRITTFEGSLQSIKGLGKCAETKLLNTFKTYVNIFNAPLEELEKVVSKKIALEIKKLYESKK
>NC_014552.1|WP_013354880.1|746987_747329_+|thioredoxin-family-protein
MKQVAWNEVQNMVANSNNENNIYFITFTTSWCPDCKVMKPIVESVEEEYKEYNEIIFLEVDAEKAQLFREINNRWKILHVPTFLIMKNNKIIQRGENYYPKEILCDWVEKVLE
>NC_014552.1|WP_013527060.1|744912_746979_+|hypothetical-protein
MKIEVNSVRKRLKIFAREKKNENDVVGDVSYSIPGEILKFLILLFVALAFIMFQYQDLFFHNDNKVINIIRKIYLYSFGLAFGDIITLVIIGSFLTLMVRWFGSIFKNHYFAWFKSYTRVDYWILRKRIISFVWLTLLFVVLIYHVVLVSFRVENIWYYSTADVKNIYLKGWYYTFTNQADLLDGKSVDYPVAYLNIGFLLDTLFNLFYVVTFSPYLAIISAFLIWTLAWLFLVTLNPIKYFKNINEHKKTIVMVEQYLQKINSLFYYTPQVRELFRFYKDAAQVLKVDYFKFNFRYLQKLVKKNLTLLAQHTLTAKYFENVKAKKTASQLEAEEFLKIVETTQTNTTSATITLNAAADIKMPAINAQNLLVNKHNKNNTNTYISNESTSEYSKDFDLTEERYMSNYVETIEVEAQSQESTKLLIDDLENKKSDTEEIKAKTKEMTAKFEAVQPTEEKTKEITNILLADQVISEVTKEEKLAPTIEQVSQQFLVDTNELTDTNDVEKDQTQSNIIDQNNSKTVKLVKETIENEESKTLEQEIAFLIDSSENTFVMSAEKNTQNITQTMSQPVEVKAQTIEQKIEENVENKKQTIGFIIPEDSNETIIEKDDDLKTKEEFIAQLDSIEADNLASKEIKLEQPESEKRQNFQFTFDTNTIVINNDSNKSKDRVDHFEDDNDWVSPILSDN
>NC_014552.1|WP_013354878.1|743507_744347_+|deoxyribonuclease-IV
MIKLGSHISFKSPDYLVGSIKESLKNKANCTMIYLGAPQNAKRVDPKVYKYEEYKANYSNLIKPEDIVIHAPYIINPSSKDKVKNAFAVDFLIKEIQRMNYIGVKYLVLHPGAYTTYELQESLAQLVKSLKEVLAKTKDVVICIETMSGKGTEVGTNFAQLRYLIDELANDRLQICLDTCHVWDAGYNIKNYQEFKSEINKYNLLKHIKVIHLNDSKNDLNSHKDRHENIDKGFIGIDTLAKFVHDKDFDNVPIILETPIPENGPIYDQEIAALLAYKK
>NC_014552.1|WP_013354877.1|742675_743515_+|HAD-IIB-family-hydrolase
MDQNQKTYFIDLDGTLFDQRKKSRISAKNISAILLLKNFANVVLSTGRSFSDQRVQQAIYQLGIKDVITSSGAEIYIDNNLVWQRTFKKDTANKIQKFAEENKILYVIFDEEGETIYVHNAFDYWINKLFLSKKMHGIKRSKNFNFNNHKNITKIALILKNIAGAKNILKTFQVNFDDICNSYLASANYVVEITTIDANKGLSESAYCALKGINQNNTIHIGDSMADASVKGYVGKLVAMGNATSDLKVVADEIAPNYKSGGLYRYFVSSKGKKGSNND
>NC_014552.1|WP_183142947.1|742171_742582_+|AAA-family-ATPase
MNILDECKFINYINVGYDCSKLILIFQSNVSQDNYSNNKDKNSQKEQEKMIQKFRPELVGRFKDISFLDKFNAKQVKALINKKIKEDEINIYCEKAISNLFIDIKKSDKFYDDELKLKIYAIKNDGSGKVFRTKIY
>NC_014552.1|WP_013354886.1|753372_754419_-|Fic-family-protein
MVKKEKRFFDYSFLKNIINNEINKKLKQIYELNGLINDFSNIPEQTKNTLIKNSIFQSVTSSNKIENIVSTTNKIENIIFNNKKYTGENELEIQGYNDVLNIILNNFDNIDITKSNILNLHNQLYKYSNKTYLKGKFKEMNNYIFSIDQNNYKTVIFEPVDHSLVDDYITKICDEYNKRNDEKIIDPLILIPTFILDFLCIHPFSDGNGRISRLLTNCLLFQNDFMINKYISFEKIIEEKLNQYYFALRKSSTNWHNNQNDYLPFIDYFLDCLIISYNKLIDVNKKDYLVNQIIKILTTSLIPLSTKEISEQLVSISRRTLERKLKVLLEQNKIKKVGQYKNAKYKLT
>NC_014552.1|WP_013527068.1|756815_756998_-|hypothetical-protein
MLLVILKENINDKQKYLKEYLITFLLSDILEHYNVKNDYKIEELLKFLASSSSSLTNTKK
>NC_014552.1|WP_015511099.1|757004_757217_-|AAA-family-ATPase
MIKFTFRLVKSQVDIYVTGSNLKFLSNDIAIEFIGRGEEIKICPYSFKEIVQYFNLKENEYDLYFDDYYK
>NC_014552.1|WP_143715668.1|757192_757417_-|AAA-family-ATPase
MKYFFYNYLIQNNVDINHIISLSFDNLKTKELLDATKAYNHIKKLIKDQGIYYLLLDEIQNIKDFPLLLNSLLD
>NC_014552.1|WP_013354888.1|757558_758686_-|Fic-family-protein
MKKELDLSFKYTDELVNYLLEIEKYKSSLEFLSLPTRSKQRIQFEAKIKQTHFSTSIEGNVLNIEQVKNVINNKTHQTRIKAEQEVLNYWEALSFLERSKKAKIKITKDFIFSLHNIIEAKSSRITKIDFRQPTPLGVLFAVYDSVTKSPEYIPPEAKDINILIDELITWINENQHLPSAIRAAIIHYAFVTIHPFEDDNGRSARALATYSLMLDDYDFKGFNSFEEYYSNNLNEYYQALQMDLSPLFYNGRNKPPHLEKWITYFCKIMALNAQNIYLSALKASAKDNSYNDLLNNLNKKDLTLLRYCIENKKSIILIKDLALVFGVTSRAISKWTKDWIDKDILVPNSGTKRITSYKLNKKYAKFKVSDLGFID
>NC_014552.1|WP_187322835.1|758803_758956_-|hypothetical-protein
MKEYKILTEHPSKAEDLMNEMASKGWEVLAVNYWMNWKVCLVITFVRGKQ
>NC_014552.1|WP_013527071.1|759487_759817_+|hypothetical-protein
MLIDKDGSIYIDILGIEKFPTKTLTREELNEYQLFVHNLGVTESTISKLLYTKIKSTNSFYNLIESKIEKLKNLLLTLNLDKNKLESEIKDFTHNICKINKKIGELIQF
>NC_014552.1|WP_013354889.1|760153_762310_-|RNA-binding-transcriptional-accessory-protein
MDLSKKFVAQKLNLKEDQVEVVLKLMDEGATVPFIARYRKNVTGGLDEEVIQQISDMYVYNVELNKRKEAIIDILKEKGLLTPEIENKLKAAETKAEVENIYEPFKVGKKTKASEAIALGLEPLAKAIMEATDESFDPYKEAKKYLNDKVPTVEFAIEQAQYIISQIMSQDVENREYVKKQIYDFGFIVTKVKKNAEDEKEVFQQYYDYKERIKFIPNHRVLAISRGEDKKILSYDMTYNLAKITYDLNNKYFKIKRTGKILNESLKDSLDRLILPSIIREIKSDLFARAEKEAINLFATNLETMLLWPAVKNKTVMAIDPAFVNGCKIAILDPQGKFLKKALIYPNPPQNYVDKAKEIVNKLLDSYKVNIIVIGNGTASRETEEFIANLLKERSKVNPNEDISYAVVSEVGASVYSASKVAIDEFPDFSVEERSAVNIGRRFQDPLNELVKIDPKAIGVGQYQHDVNQKDLSKALDFKVDKVVNMVGVDLNSATKEILCYISGLTKTLAQNIIDYREKINKFKERKELLKVKGLGEKAYEQAVGFLRIHDSKNFYDRTAIHPESYPLAINIVNALQLDLNDIDLKTIEQQDVNKLAKDFNSNEYDVKLILDSLSNPTKDIRDDKDGYILKKDVLKLEDLKPGMILDGSVQNITDFGIFVYIGIKQAALIHISNMKRNKDHYIKHSSEVVKTGDNIKIQILEIDKERERIQGKLIWED
>NC_014552.1|WP_041593949.1|762611_764225_+|CTP-synthase
MVTKFIVTTGGVLSGLGKGVTSASIGNLLKAQGFKVFALKLDPYLNIDPGVMSPIEHGEVFVTADGGETDLDLGHYERFIDVKLSKESNYTSGRIFTRIFEKERQGLYGGKTVQIVPHVIDEIISIIENTAKKQKPDFMLIEIGGTVGDIESNPYIYAISKFASLNPKSVFFAHLAFIPYLTASKEYKSKPSQVSIASLRSFGINPNILLLRSQGEVDERIINKVAEASFLDPNHVIGVPDKSSIYEIPMFLYEQNILKIIYSHFEIKKQINDKVYDSWKVFLNKYHATKNYKINLLLVGKYTELEDAYLSIISSLKIAAVHQNVELKYDLIDADLVNNKNIEKLTKAHDAVMILPGFGARGFESKVNVTTYTREHKIPTLGICLGFQAMSVAQARLLGIKDATSKEFAENGKKQTFVLTPFYENGDKMAIGGTLRLGEDQVQAKNNTLAQKIYGSNIFYERHRHRYEINPEYLEKLQDDEFTFSAIHPTKKVAEICEVKNHPFYLGVQYHPEFSTRVLASNPLFDNFFQAIIKNQK
>NC_014552.1|WP_013354891.1|764236_766903_+|isoleucine--tRNA-ligase
MAIDYKKTLNMPQTNFDMRANLTTKEPAFRKEWEDNKIYEKVLNKNKKNTPFILHDGPPYANGNLHIGHALNKILKDIVIRYKSLRGFYAPYVPGWDTHGLPIEHKMLEEAHLKKNELSVVDLRKKAALYAQDQVNKQAEQFKSMQLLCDFKKYYITKDPKFEAQQLRLFKKMIFSGLIYKGLKPVYWSPSSQSALAEAEVIYKDIKSPSIFVAFEIKDNLGSQKINVKDNLVIWTTTPWTLLANAAVAVGQDIQYSRVEHDKKGYIFASDLVEKVVSQLGWKSYKITNTFNSQEILNMQYVSPLNKNVCPVVIGHHVTLESGSGLVHIAPLFGEDDFQIGIKNSLKMIMHIEDDGKINKEGGAYQGQFYEKANALIIEELTKSKNLLLESSITHSYPHDWRTHKPILFRGTPQWFVSINKIKDQILSQLEKVKTYPDWAKKRLSNMIVDRDDWTISRQRTWGVPLIIFYDKSKKPVLNEDIFDHIIKLVEKHGTDIWYQKTADELLPKKYQNKGYTKENDIMDVWFDSGSTFMAVNIDKGLETPYDLYLEGSDQFRGWFNSSLINSVAYNGKAPYKNIVSHGFVLDAKGEKMSKSKGNVVDPLKIISKNGADILRLWVANSEYSNDVSISDNIINQNSEIYRKIRNTIKFMLGNLNGFKYDSNLKRIGVHAYIKEQLEKVKAQVIEAYDEYKFINVIKLLNNYVVELSSFYLNISKDVLYVEAKDSINRLMTLTNIYEIVDFLIIALAPILPTTAEDAYKNFNKVNKAESVHLETLANPLKVNEQVLTQWQDFFKLRDEVNLSLENAIKEGLIKRTNEAKVVIKSDSDFIKSLDLRQLLMVGKVEFGAQTSVSVFKSIKCQRCWNHFMPSQIKEELCPLCHKVVFNE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	NC_005005	Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04, complete sequence	16476-16507	8	0.75
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	KY290956	Aeromonas phage L9-6, complete genome	111563-111594	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	KY290951	Aeromonas phage 31.2, complete genome	110964-110995	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	NC_005135	Aeromonas phage 44RR2.8t, complete genome	111205-111236	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	AY962392	Aeromonas phage 31, complete genome	110967-110998	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	KY290958	Aeromonas phage SW69-9, complete genome	111099-111130	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	AY375531	Bacteriophage 44RR2.8t, complete genome	111205-111236	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	KY290948	Aeromonas phage 44RR2.8t.2, complete genome	111205-111236	10	0.688
NC_014552_1	1.1\|256736\|32\|NC_014552\|CRISPRCasFinder	256736-256767	32	KY290957	Aeromonas phage Riv-10, complete genome	112300-112331	10	0.688
NC_014552_2	2.1\|752330\|39\|NC_014552\|CRISPRCasFinder	752330-752368	39	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	15865-15903	12	0.692

1. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to NC_005005 (Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04, complete sequence) position: , mismatch: 8, identity: 0.75

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tctatataaatatcaaaaagcgaaaataataa	Protospacer
*   ** ***** **************  **

2. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to KY290956 (Aeromonas phage L9-6, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

3. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to KY290951 (Aeromonas phage 31.2, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

4. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to NC_005135 (Aeromonas phage 44RR2.8t, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

5. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to AY962392 (Aeromonas phage 31, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

6. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to KY290958 (Aeromonas phage SW69-9, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

7. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to AY375531 (Bacteriophage 44RR2.8t, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

8. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to KY290948 (Aeromonas phage 44RR2.8t.2, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

9. spacer 1.1|256736|32|NC_014552|CRISPRCasFinder matches to KY290957 (Aeromonas phage Riv-10, complete genome) position: , mismatch: 10, identity: 0.688

tggttaaaaatagcaaaaagcgaaaattctac	CRISPR spacer
tttgtaaaaatcgcaaaaagcgaatatgaccg	Protospacer
*   ******* ************ **  .

10. spacer 2.1|752330|39|NC_014552|CRISPRCasFinder matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 12, identity: 0.692

gattttacctatttttatatacttttcgttaaaaaaata	CRISPR spacer
ttctttaccaatttttatatacttttctttatgcttaac	Protospacer
  .****** ***************** *** .   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

104992 : 113237

Acanthamoeba_polyphaga_mimivirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013354365.1\|104992_106750_+	molecular chaperone DnaK	A0A0G2YAL1	Acanthamoeba_polyphaga_mimivirus	2.7e-123	44.9
WP_013354366.1\|106938_108153_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	3.3e-64	36.0
WP_013354367.1\|108154_109117_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	4.8e-26	37.0
WP_013354368.1\|109106_109778_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	1.0e-27	36.0
WP_013354369.1\|109779_111966_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.8e-15	41.7
WP_013354370.1\|111974_113237_+	serine hydroxymethyltransferase	A0A240F2Y9	Aeromonas_phage	3.2e-94	50.0

DBSCAN-SWA_2

838561 : 847008

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013354958.1\|838561_839935_+	M17 family metallopeptidase	Q6GYZ8	Mycoplasma_phage	4.4e-206	99.7
WP_013354959.1\|840007_840586_+	thymidine kinase	Q6GYZ9	Mycoplasma_phage	5.0e-103	100.0
WP_013527135.1\|840658_840850_-	hypothetical protein	NA	NA	NA	NA
WP_129622077.1\|840959_841592_-	DUF4143 domain-containing protein	NA	NA	NA	NA
WP_158303399.1\|841734_841872_-	hypothetical protein	NA	NA	NA	NA
WP_013527144.1\|841887_842328_-	AAA family ATPase	NA	NA	NA	NA
WP_013354960.1\|842457_843999_-	spermidine/putrescine ABC transporter substrate-binding protein	Q6GZ00	Mycoplasma_phage	1.1e-301	99.2
WP_013354961.1\|843964_844819_-	ABC transporter permease subunit	Q6GZ01	Mycoplasma_phage	3.5e-153	98.9
WP_013354962.1\|844811_845651_-	ABC transporter permease	Q6GZ02	Mycoplasma_phage	4.4e-140	100.0
WP_013354963.1\|845634_847008_-	ATP-binding cassette domain-containing protein	Q6GZ03	Mycoplasma_phage	2.4e-119	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014552

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection