CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017280	Campylobacter jejuni subsp. jejuni M1, complete sequence	2 crisprs	DEDDh,WYL,cas2,cas1,csa3	0	10	0	0

1. NC_017280

CRISPR-Cas detection and classification

Crispr_ID: NC_017280_1

• CRISPR_ID: NC_017280_1
• CRISPR_location: 1329727-1329806
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017280_1

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

spacers of NC_017280_1

>1.1|1329750|34|NC_017280|CRISPRCasFinder
TTTTTTAGCTTTATACTCAGCCTTACTCATATAA

CRISPR arrays and Neighbor proteins around NC_017280_1

CRISPR arrays

The CRISPR arrays of NC_017280_1

>merge|NC_017280|1|1329727-1329806|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NC_017280|1|1|1329727-1329806|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017280.1|WP_014517094.1|1334259_1335381_-|membrane-protein	unknown	unknown	unknown
NC_017280.1|WP_002855339.1|1329326_1329653_+|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NC_017280.1|WP_002880391.1|1332485_1332905_-|hypothetical-protein	unknown	unknown	unknown
NC_017280.1|WP_014517091.1|1328753_1329299_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|223985
NC_017280.1|WP_002877370.1|1320016_1321357_+|MmgE/PrpD-family-protein	unknown	unknown	gnl|CDD|377179
NC_017280.1|WP_014517090.1|1325822_1326494_-|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NC_017280.1|WP_153610262.1|1339141_1339282_-|hypothetical-protein	unknown	unknown	unknown
NC_017280.1|WP_002825806.1|1332137_1332485_+|holo-ACP-synthase	unknown	unknown	gnl|CDD|223807
NC_017280.1|WP_014517100.1|1339981_1341268_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224153
NC_017280.1|WP_002877372.1|1321659_1323501_+|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NC_017280.1|WP_002855429.1|1331601_1332138_+|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl|CDD|181433
NC_017280.1|WP_014517089.1|1323497_1324991_-|hydrogenase-small-subunit	unknown	unknown	gnl|CDD|224654
NC_017280.1|WP_002783833.1|1326490_1327693_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NC_017280.1|WP_014517092.1|1330108_1331479_-|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl|CDD|100091
NC_017280.1|WP_002877378.1|1327695_1328694_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NC_017280.1|WP_002877376.1|1324994_1325819_-|enoyl-ACP-reductase-FabI	unknown	unknown	gnl|CDD|181416
NC_017280.1|WP_014517098.1|1337952_1338444_-|hypothetical-protein	unknown	unknown	unknown
NC_017280.1|WP_014517095.1|1335453_1336638_-|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl|CDD|226092
NC_017280.1|WP_002779147.1|1321438_1321663_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|224830
NC_017280.1|WP_014517093.1|1332901_1334263_-|cytochrome-P450	unknown	unknown	gnl|CDD|225035

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017280.1|WP_002855339.1|1329326_1329653_+|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NC_017280.1|WP_014517091.1|1328753_1329299_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	5.6485e-57
NC_017280.1|WP_002877370.1|1320016_1321357_+|MmgE/PrpD-family-protein	gnl|CDD|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.97497e-117
NC_017280.1|WP_014517090.1|1325822_1326494_-|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	9.337e-86
NC_017280.1|WP_002825806.1|1332137_1332485_+|holo-ACP-synthase	gnl|CDD|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NC_017280.1|WP_014517100.1|1339981_1341268_+|FAD-dependent-oxidoreductase	gnl|CDD|224153	COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].	7.44054e-59
NC_017280.1|WP_002877372.1|1321659_1323501_+|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NC_017280.1|WP_002855429.1|1331601_1332138_+|flagellar-basal-body-associated-protein-FliL	gnl|CDD|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NC_017280.1|WP_014517089.1|1323497_1324991_-|hydrogenase-small-subunit	gnl|CDD|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	7.23056e-155
NC_017280.1|WP_002783833.1|1326490_1327693_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_017280.1|WP_014517092.1|1330108_1331479_-|phosphoglucosamine-mutase-PgmL	gnl|CDD|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_017280.1|WP_002877378.1|1327695_1328694_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	3.35917e-168
NC_017280.1|WP_002877376.1|1324994_1325819_-|enoyl-ACP-reductase-FabI	gnl|CDD|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_017280.1|WP_014517095.1|1335453_1336638_-|capsule-polysaccharide-modification-protein-KpsS	gnl|CDD|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_017280.1|WP_002779147.1|1321438_1321663_+|ferrous-iron-transport-protein-A	gnl|CDD|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NC_017280.1|WP_014517093.1|1332901_1334263_-|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.78086e-78

Protein sequences

>NC_017280.1|WP_002855339.1|1329326_1329653_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NC_017280.1|WP_014517091.1|1328753_1329299_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNINEVCEEIKDEVKKYYEKLQKN
>NC_017280.1|WP_002877378.1|1327695_1328694_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDEERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NC_017280.1|WP_002783833.1|1326490_1327693_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NC_017280.1|WP_014517090.1|1325822_1326494_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEVIDLNYEKLIIAYEPIYSIGTGVSAQATDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NC_017280.1|WP_002877376.1|1324994_1325819_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEVHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NC_017280.1|WP_014517089.1|1323497_1324991_-|hydrogenase-small-subunit
MTKLSNEELKNILEGRIKKLENSILKEDKVVNEESVKILAKHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKVGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS
>NC_017280.1|WP_002877372.1|1321659_1323501_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN
>NC_017280.1|WP_002779147.1|1321438_1321663_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NC_017280.1|WP_002877370.1|1320016_1321357_+|MmgE/PrpD-family-protein
MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKEECVLNAFKAFENLSTDKNTPIWVNDQKLVPIYAAMLDGIASHALDFDDTHTEAILHASAILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLDSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQKDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF
>NC_017280.1|WP_014517092.1|1330108_1331479_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGEELKEFSKEVYKHLDDEIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIHVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NC_017280.1|WP_002855429.1|1331601_1332138_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NC_017280.1|WP_002825806.1|1332137_1332485_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NC_017280.1|WP_002880391.1|1332485_1332905_-|hypothetical-protein
MKRVRVKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NC_017280.1|WP_014517093.1|1332901_1334263_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRTKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NC_017280.1|WP_014517094.1|1334259_1335381_-|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKTDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKIGTMQERIKLFANVIVEKLKQNESKQDYELILVAHSVGTIVCIEVLEYILRQHLDLSLLCKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NC_017280.1|WP_014517095.1|1335453_1336638_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLSMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYKDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQSIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NC_017280.1|WP_014517098.1|1337952_1338444_-|hypothetical-protein
MNFKTLSILLFFVNFFVACSDDSMLSCDDTQVLDFLEQEEKGQIYQDIMQNLKYTNRVNLDYFSIEPELSKATQEALQEFVNSVDISYSFFIAESIDEKTKKSVCSAVETLRFPRESEKLFKLSIQDLENAFNSKMKLQEENDAIYQAKFCVAISLIQKIIIN
>NC_017280.1|WP_153610262.1|1339141_1339282_-|hypothetical-protein
MEDDLMSDDNLETYFRLLSIPWAYIPFDNDLQCFENFVKDIIIRNF
>NC_017280.1|WP_014517100.1|1339981_1341268_+|FAD-dependent-oxidoreductase
MKNYIILGAGIAGISVAYHLKQKNISSIIYEKNHYFGGLCSSFKINDFIFDNAVHLSFTKDEYVKKLFSNSCRVISHKPPKISNYYKGYWLKHPAQNNLEPLELKEKIDIISDFCENPYKNIEINNYEDWLKAQYGKYFSQNFTMRYTRKYWNIEAKDLSTSWVGSRMYKPNISEVLKGAFEKETPNTYYADEMRVPQYGGYQSFLNLMAKECNIQYDKEIIEINPANKMIYFKDGSFKNYDVLVSTLPLPEYAKLIKNIPNEISLACQKLKYTSVVLVSLGFSKPDIAKHIWFYIYDEDILPARCYSPNKKSPYNVPKNCSSLQFEIYFSQDKPLNFDENEIIKKVVNQGKKMGIFCEEDIILKDYRILPYGNVIFYHNMEKDREKIRNFLESCNIHTAGRFGKWEYLWSDQSLLSGKEVAEKLYEL

Crispr_ID: NC_017280_2

• CRISPR_ID: NC_017280_2
• CRISPR_location: 1431607-1431840
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: cas2,cas1

Consensus repeat of NC_017280_2

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

spacers of NC_017280_2

>2.1|1431643|30|NC_017280|CRT
TGATTTATTAGTAACCCATCAAGTTGGCTT
>2.2|1431709|30|NC_017280|CRT
GCTTTAGGAAATGCTTTAAAACGCTTTGGA
>2.3|1431775|30|NC_017280|CRT
ATTTGCAAGGTATATAAAAAATTTGATTTT
>2.4|1431644|30|NC_017280|PILER-CR
TGATTTATTAGTAACCCATCAAGTTGGCTT
>2.5|1431710|30|NC_017280|PILER-CR
GCTTTAGGAAATGCTTTAAAACGCTTTGGA
>2.6|1431776|30|NC_017280|PILER-CR
ATTTGCAAGGTATATAAAAAATTTGATTTT
>2.7|1431643|31|NC_017280|CRISPRCasFinder
TGATTTATTAGTAACCCATCAAGTTGGCTTG
>2.8|1431709|31|NC_017280|CRISPRCasFinder
GCTTTAGGAAATGCTTTAAAACGCTTTGGAG
>2.9|1431775|31|NC_017280|CRISPRCasFinder
ATTTGCAAGGTATATAAAAAATTTGATTTTG

CRISPR arrays and Neighbor proteins around NC_017280_2

CRISPR arrays

The CRISPR arrays of NC_017280_2

>merge|NC_017280|2|1431607-1431840|CRT,PILER-CR,CRISPRCasFinder
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGATTTATTAGTAACCCATCAAGTTGGCTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGCTTTAGGAAATGCTTTAAAACGCTTTGGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATTTGCAAGGTATATAAAAAATTTGATTTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017280|2|1|1431607-1431840|CRT
TTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGATTTATTAGTAACCCATCAAGTTGGCTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCTTTAGGAAATGCTTTAAAACGCTTTGGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTGCAAGGTATATAAAAAATTTGATTTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017280|2|1|1431608-1431840|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	GATTTATTAGTAACCCATCAAGTTGGCTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATG	CTTTAGGAAATGCTTTAAAACGCTTTGGAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TTTGCAAGGTATATAAAAAATTTGATTTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017280|2|2|1431608-1431840|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGATTTATTAGTAACCCATCAAGTTGGCTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GCTTTAGGAAATGCTTTAAAACGCTTTGGAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATTTGCAAGGTATATAAAAAATTTGATTTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017280.1|WP_002867075.1|1442084_1443122_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NC_017280.1|WP_002877469.1|1426813_1427962_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NC_017280.1|WP_002867060.1|1428085_1429627_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NC_017280.1|WP_002851264.1|1422188_1422830_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NC_017280.1|WP_012006785.1|1425796_1426510_-|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl|CDD|225916
NC_017280.1|WP_012006787.1|1436458_1437916_+|C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl|CDD|225611
NC_017280.1|WP_002855824.1|1421259_1422192_-|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl|CDD|130645
NC_017280.1|WP_002867072.1|1440629_1441379_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NC_017280.1|WP_002851537.1|1425630_1425822_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NC_017280.1|WP_002867076.1|1443188_1443638_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NC_017280.1|WP_002779495.1|1437940_1438918_-|hypothetical-protein	unknown	unknown	gnl|CDD|340821
NC_017280.1|WP_002877301.1|1441353_1442088_+|glucosaminidase-domain-containing-protein	unknown	unknown	gnl|CDD|225539
NC_017280.1|WP_002867070.1|1438977_1439967_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NC_017280.1|WP_002867061.1|1429628_1429850_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NC_017280.1|WP_171770385.1|1431985_1432399_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NC_017280.1|WP_002867063.1|1430300_1431491_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NC_017280.1|WP_022552433.1|1422826_1425631_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NC_017280.1|WP_002867071.1|1440027_1440633_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NC_017280.1|WP_002867064.1|1432409_1433300_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NC_017280.1|WP_002867062.1|1429850_1430297_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017280.1|WP_171770385.1|1431985_1432399_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	3.5e-55	180.0	0.7
NC_017280.1|WP_002867064.1|1432409_1433300_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	4.5e-98	322.5	8.6

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017280.1|WP_002867075.1|1442084_1443122_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.51502e-33
NC_017280.1|WP_002877469.1|1426813_1427962_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_017280.1|WP_002867060.1|1428085_1429627_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.1439e-117
NC_017280.1|WP_002851264.1|1422188_1422830_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NC_017280.1|WP_012006785.1|1425796_1426510_-|molecular-chaperone-TorD-family-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000581315
NC_017280.1|WP_012006787.1|1436458_1437916_+|C4-dicarboxylate-transporter-DcuC	gnl|CDD|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	2.86452e-71
NC_017280.1|WP_002855824.1|1421259_1422192_-|formate-dehydrogenase-subunit-gamma	gnl|CDD|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.52433e-86
NC_017280.1|WP_002867072.1|1440629_1441379_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.20349e-93
NC_017280.1|WP_002851537.1|1425630_1425822_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NC_017280.1|WP_002867076.1|1443188_1443638_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	2.50412e-50
NC_017280.1|WP_002779495.1|1437940_1438918_-|hypothetical-protein	gnl|CDD|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.05794e-09
NC_017280.1|WP_002877301.1|1441353_1442088_+|glucosaminidase-domain-containing-protein	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.2203e-99
NC_017280.1|WP_002867070.1|1438977_1439967_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_017280.1|WP_002867061.1|1429628_1429850_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NC_017280.1|WP_171770385.1|1431985_1432399_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.3054e-55
NC_017280.1|WP_002867063.1|1430300_1431491_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.19384e-142
NC_017280.1|WP_022552433.1|1422826_1425631_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_017280.1|WP_002867071.1|1440027_1440633_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.80993e-71
NC_017280.1|WP_002867064.1|1432409_1433300_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.27175e-120
NC_017280.1|WP_002867062.1|1429850_1430297_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.04214e-42

Protein sequences

>NC_017280.1|WP_002867063.1|1430300_1431491_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP
>NC_017280.1|WP_002867062.1|1429850_1430297_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDDISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NC_017280.1|WP_002867061.1|1429628_1429850_+|MoaD/ThiS-family-protein
MIKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NC_017280.1|WP_002867060.1|1428085_1429627_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGKERIYHFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NC_017280.1|WP_002877469.1|1426813_1427962_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKVFKEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN
>NC_017280.1|WP_012006785.1|1425796_1426510_-|molecular-chaperone-TorD-family-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NC_017280.1|WP_002851537.1|1425630_1425822_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NC_017280.1|WP_022552433.1|1422826_1425631_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAYYVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NC_017280.1|WP_002851264.1|1422188_1422830_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NC_017280.1|WP_002855824.1|1421259_1422192_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NC_017280.1|WP_171770385.1|1431985_1432399_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NC_017280.1|WP_002867064.1|1432409_1433300_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIGQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NC_017280.1|WP_012006787.1|1436458_1437916_+|C4-dicarboxylate-transporter-DcuC
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINASAKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPRCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLAPDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIAVSLNNK
>NC_017280.1|WP_002779495.1|1437940_1438918_-|hypothetical-protein
MKNIVFHSDGFGDLLVCFKALYAIKQLYPEYKLFLLTNGLMESDFLEKIPFIDEVLIYKDDFLEKIQSKNPVIFITTRRQGLYFKKLKFLNVQKCIVFPHLISIISKNLTTPLPFFRAKKHMSEIVLKLVRMINTRHFDKNFNQIDFSKIKNLLPYDARLSDNFFKQIDTKYEKIIGINAFSNNSEYRGFNFFIKDWIGLARQLSLKYPKFLFILLNFSTNSIQYNIDQNANLKVFCNNKNIASLVSISQKLDFLITVDTGNLHLCDILQIPTLAFTSSLAAYRFGGGSYGGRFDKLIVKPAWQKEYRKIYEIFTKKAENNLENL
>NC_017280.1|WP_002867070.1|1438977_1439967_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATVKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPSGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NC_017280.1|WP_002867071.1|1440027_1440633_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENALELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NC_017280.1|WP_002867072.1|1440629_1441379_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFS
>NC_017280.1|WP_002877301.1|1441353_1442088_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFAADDLKSGFGEEYYKLDIDQKRQIFFTKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NC_017280.1|WP_002867075.1|1442084_1443122_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NC_017280.1|WP_002867076.1|1443188_1443638_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEEAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017280_2	2.1|1431643|30|NC_017280|CRT	1431643-1431672	30	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	12710-12739	0	1.0
NC_017280_2	2.1|1431643|30|NC_017280|CRT	1431643-1431672	30	CP013734	Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence	5197-5226	0	1.0
NC_017280_2	2.3|1431775|30|NC_017280|CRT	1431775-1431804	30	MN530981	Campylobacter phage DA10, complete genome	23436-23465	0	1.0
NC_017280_2	2.4|1431644|30|NC_017280|PILER-CR	1431644-1431673	30	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	12710-12739	0	1.0
NC_017280_2	2.4|1431644|30|NC_017280|PILER-CR	1431644-1431673	30	CP013734	Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence	5197-5226	0	1.0
NC_017280_2	2.6|1431776|30|NC_017280|PILER-CR	1431776-1431805	30	MN530981	Campylobacter phage DA10, complete genome	23436-23465	0	1.0
NC_017280_2	2.7|1431643|31|NC_017280|CRISPRCasFinder	1431643-1431673	31	NZ_CP014746	Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence	12709-12739	0	1.0
NC_017280_2	2.9|1431775|31|NC_017280|CRISPRCasFinder	1431775-1431805	31	MN530981	Campylobacter phage DA10, complete genome	23435-23465	0	1.0
NC_017280_2	2.1|1431643|30|NC_017280|CRT	1431643-1431672	30	NZ_CP007184	Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence	13127-13156	1	0.967
NC_017280_2	2.2|1431709|30|NC_017280|CRT	1431709-1431738	30	MN530981	Campylobacter phage DA10, complete genome	7439-7468	1	0.967
NC_017280_2	2.4|1431644|30|NC_017280|PILER-CR	1431644-1431673	30	NZ_CP007184	Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence	13127-13156	1	0.967
NC_017280_2	2.5|1431710|30|NC_017280|PILER-CR	1431710-1431739	30	MN530981	Campylobacter phage DA10, complete genome	7439-7468	1	0.967
NC_017280_2	2.7|1431643|31|NC_017280|CRISPRCasFinder	1431643-1431673	31	CP013734	Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence	5197-5227	1	0.968
NC_017280_2	2.8|1431709|31|NC_017280|CRISPRCasFinder	1431709-1431739	31	MN530981	Campylobacter phage DA10, complete genome	7438-7468	1	0.968
NC_017280_2	2.1|1431643|30|NC_017280|CRT	1431643-1431672	30	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	4559-4588	2	0.933
NC_017280_2	2.1|1431643|30|NC_017280|CRT	1431643-1431672	30	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	10105-10134	2	0.933
NC_017280_2	2.4|1431644|30|NC_017280|PILER-CR	1431644-1431673	30	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	4559-4588	2	0.933
NC_017280_2	2.4|1431644|30|NC_017280|PILER-CR	1431644-1431673	30	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	10105-10134	2	0.933
NC_017280_2	2.7|1431643|31|NC_017280|CRISPRCasFinder	1431643-1431673	31	NZ_CP007184	Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence	13126-13156	2	0.935
NC_017280_2	2.1|1431643|30|NC_017280|CRT	1431643-1431672	30	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	4556-4585	3	0.9
NC_017280_2	2.4|1431644|30|NC_017280|PILER-CR	1431644-1431673	30	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	4556-4585	3	0.9
NC_017280_2	2.7|1431643|31|NC_017280|CRISPRCasFinder	1431643-1431673	31	NC_008770	Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence	4559-4589	3	0.903
NC_017280_2	2.7|1431643|31|NC_017280|CRISPRCasFinder	1431643-1431673	31	NZ_CP010074	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence	10105-10135	3	0.903
NC_017280_2	2.7|1431643|31|NC_017280|CRISPRCasFinder	1431643-1431673	31	NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	4556-4586	4	0.871
NC_017280_2	2.2|1431709|30|NC_017280|CRT	1431709-1431738	30	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	32985-33014	6	0.8
NC_017280_2	2.5|1431710|30|NC_017280|PILER-CR	1431710-1431739	30	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	32985-33014	6	0.8
NC_017280_2	2.3|1431775|30|NC_017280|CRT	1431775-1431804	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	165605-165634	7	0.767
NC_017280_2	2.3|1431775|30|NC_017280|CRT	1431775-1431804	30	MK250016	Prevotella phage Lak-A1, complete genome	409475-409504	7	0.767
NC_017280_2	2.6|1431776|30|NC_017280|PILER-CR	1431776-1431805	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	165605-165634	7	0.767
NC_017280_2	2.6|1431776|30|NC_017280|PILER-CR	1431776-1431805	30	MK250016	Prevotella phage Lak-A1, complete genome	409475-409504	7	0.767
NC_017280_2	2.9|1431775|31|NC_017280|CRISPRCasFinder	1431775-1431805	31	NZ_CP053843	Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence	11195-11225	7	0.774
NC_017280_2	2.2|1431709|30|NC_017280|CRT	1431709-1431738	30	AP013387	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C42-MedDCM-OCT-S29-C52	5428-5457	8	0.733
NC_017280_2	2.3|1431775|30|NC_017280|CRT	1431775-1431804	30	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	122326-122355	8	0.733
NC_017280_2	2.3|1431775|30|NC_017280|CRT	1431775-1431804	30	NC_022782	Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence	14648-14677	8	0.733
NC_017280_2	2.3|1431775|30|NC_017280|CRT	1431775-1431804	30	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	252476-252505	8	0.733
NC_017280_2	2.5|1431710|30|NC_017280|PILER-CR	1431710-1431739	30	AP013387	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C42-MedDCM-OCT-S29-C52	5428-5457	8	0.733
NC_017280_2	2.6|1431776|30|NC_017280|PILER-CR	1431776-1431805	30	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	122326-122355	8	0.733
NC_017280_2	2.6|1431776|30|NC_017280|PILER-CR	1431776-1431805	30	NC_022782	Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence	14648-14677	8	0.733
NC_017280_2	2.6|1431776|30|NC_017280|PILER-CR	1431776-1431805	30	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	252476-252505	8	0.733
NC_017280_2	2.9|1431775|31|NC_017280|CRISPRCasFinder	1431775-1431805	31	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	122326-122356	9	0.71
NC_017280_2	2.9|1431775|31|NC_017280|CRISPRCasFinder	1431775-1431805	31	NC_022782	Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence	14648-14678	9	0.71
NC_017280_2	2.9|1431775|31|NC_017280|CRISPRCasFinder	1431775-1431805	31	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	252476-252506	9	0.71
NC_017280_1	1.1|1329750|34|NC_017280|CRISPRCasFinder	1329750-1329783	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1431643|30|NC_017280|CRT matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 0, identity: 1.0

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacccatcaagttggctt	Protospacer
******************************

2. spacer 2.1|1431643|30|NC_017280|CRT matches to CP013734 (Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence) position: , mismatch: 0, identity: 1.0

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacccatcaagttggctt	Protospacer
******************************

3. spacer 2.3|1431775|30|NC_017280|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
atttgcaaggtatataaaaaatttgatttt	Protospacer
******************************

4. spacer 2.4|1431644|30|NC_017280|PILER-CR matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 0, identity: 1.0

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacccatcaagttggctt	Protospacer
******************************

5. spacer 2.4|1431644|30|NC_017280|PILER-CR matches to CP013734 (Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence) position: , mismatch: 0, identity: 1.0

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacccatcaagttggctt	Protospacer
******************************

6. spacer 2.6|1431776|30|NC_017280|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
atttgcaaggtatataaaaaatttgatttt	Protospacer
******************************

7. spacer 2.7|1431643|31|NC_017280|CRISPRCasFinder matches to NZ_CP014746 (Campylobacter jejuni strain OD267 plasmid pCJDM67 S, complete sequence) position: , mismatch: 0, identity: 1.0

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacccatcaagttggcttg	Protospacer
*******************************

8. spacer 2.9|1431775|31|NC_017280|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atttgcaaggtatataaaaaatttgattttg	CRISPR spacer
atttgcaaggtatataaaaaatttgattttg	Protospacer
*******************************

9. spacer 2.1|1431643|30|NC_017280|CRT matches to NZ_CP007184 (Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence) position: , mismatch: 1, identity: 0.967

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttggctt	Protospacer
*************** **************

10. spacer 2.2|1431709|30|NC_017280|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
gctttaggaaatgctttaaaacgctttggt	Protospacer
***************************** 

11. spacer 2.4|1431644|30|NC_017280|PILER-CR matches to NZ_CP007184 (Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence) position: , mismatch: 1, identity: 0.967

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttggctt	Protospacer
*************** **************

12. spacer 2.5|1431710|30|NC_017280|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
gctttaggaaatgctttaaaacgctttggt	Protospacer
***************************** 

13. spacer 2.7|1431643|31|NC_017280|CRISPRCasFinder matches to CP013734 (Campylobacter coli strain OR12 plasmid pOR12Vir, complete sequence) position: , mismatch: 1, identity: 0.968

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacccatcaagttggctta	Protospacer
******************************.

14. spacer 2.8|1431709|31|NC_017280|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

gctttaggaaatgctttaaaacgctttggag	CRISPR spacer
gctttaggaaatgctttaaaacgctttggtg	Protospacer
***************************** *

15. spacer 2.1|1431643|30|NC_017280|CRT matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 2, identity: 0.933

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttgggtt	Protospacer
*************** *********** **

16. spacer 2.1|1431643|30|NC_017280|CRT matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 2, identity: 0.933

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttgggtt	Protospacer
*************** *********** **

17. spacer 2.4|1431644|30|NC_017280|PILER-CR matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 2, identity: 0.933

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttgggtt	Protospacer
*************** *********** **

18. spacer 2.4|1431644|30|NC_017280|PILER-CR matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 2, identity: 0.933

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttgggtt	Protospacer
*************** *********** **

19. spacer 2.7|1431643|31|NC_017280|CRISPRCasFinder matches to NZ_CP007184 (Campylobacter coli RM1875 plasmid pRM1875_35kb, complete sequence) position: , mismatch: 2, identity: 0.935

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttggctta	Protospacer
*************** **************.

20. spacer 2.1|1431643|30|NC_017280|CRT matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 3, identity: 0.9

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttgggct	Protospacer
*************** *********** .*

21. spacer 2.4|1431644|30|NC_017280|PILER-CR matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 3, identity: 0.9

tgatttattagtaacccatcaagttggctt	CRISPR spacer
tgatttattagtaacacatcaagttgggct	Protospacer
*************** *********** .*

22. spacer 2.7|1431643|31|NC_017280|CRISPRCasFinder matches to NC_008770 (Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir, complete sequence) position: , mismatch: 3, identity: 0.903

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttgggtta	Protospacer
*************** *********** **.

23. spacer 2.7|1431643|31|NC_017280|CRISPRCasFinder matches to NZ_CP010074 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj2, complete sequence) position: , mismatch: 3, identity: 0.903

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttgggtta	Protospacer
*************** *********** **.

24. spacer 2.7|1431643|31|NC_017280|CRISPRCasFinder matches to NC_017284 (Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence) position: , mismatch: 4, identity: 0.871

tgatttattagtaacccatcaagttggcttg	CRISPR spacer
tgatttattagtaacacatcaagttgggcta	Protospacer
*************** *********** .*.

25. spacer 2.2|1431709|30|NC_017280|CRT matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 6, identity: 0.8

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
gctttaggaaatgctctaaaatgtctttaa	Protospacer
***************.*****.*..** .*

26. spacer 2.5|1431710|30|NC_017280|PILER-CR matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 6, identity: 0.8

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
gctttaggaaatgctctaaaatgtctttaa	Protospacer
***************.*****.*..** .*

27. spacer 2.3|1431775|30|NC_017280|CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
ttaaggaaggtatatgaaaaatttgataat	Protospacer
 *  * *********.***********  *

28. spacer 2.3|1431775|30|NC_017280|CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
ttatatatagtatataaaaaatttaatttt	Protospacer
 * *..* .***************.*****

29. spacer 2.6|1431776|30|NC_017280|PILER-CR matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
ttaaggaaggtatatgaaaaatttgataat	Protospacer
 *  * *********.***********  *

30. spacer 2.6|1431776|30|NC_017280|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
ttatatatagtatataaaaaatttaatttt	Protospacer
 * *..* .***************.*****

31. spacer 2.9|1431775|31|NC_017280|CRISPRCasFinder matches to NZ_CP053843 (Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence) position: , mismatch: 7, identity: 0.774

atttgcaaggtatataaaaaatttgattttg	CRISPR spacer
tttttactggtatttaacaaatttgattttg	Protospacer
 ***    ***** *** *************

32. spacer 2.2|1431709|30|NC_017280|CRT matches to AP013387 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C42-MedDCM-OCT-S29-C52) position: , mismatch: 8, identity: 0.733

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
actttaggaactgctttaaaaccagttact	Protospacer
.********* ***********   **.  

33. spacer 2.3|1431775|30|NC_017280|CRT matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
tgttgcaatttatataaaaaatttgttgga	Protospacer
  ******  *************** *   

34. spacer 2.3|1431775|30|NC_017280|CRT matches to NC_022782 (Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence) position: , mismatch: 8, identity: 0.733

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
tgttgcaatttatataaaaaatttgttgga	Protospacer
  ******  *************** *   

35. spacer 2.3|1431775|30|NC_017280|CRT matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
tgttgcaatttatataaaaaatttgttgga	Protospacer
  ******  *************** *   

36. spacer 2.5|1431710|30|NC_017280|PILER-CR matches to AP013387 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C42-MedDCM-OCT-S29-C52) position: , mismatch: 8, identity: 0.733

gctttaggaaatgctttaaaacgctttgga	CRISPR spacer
actttaggaactgctttaaaaccagttact	Protospacer
.********* ***********   **.  

37. spacer 2.6|1431776|30|NC_017280|PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
tgttgcaatttatataaaaaatttgttgga	Protospacer
  ******  *************** *   

38. spacer 2.6|1431776|30|NC_017280|PILER-CR matches to NC_022782 (Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence) position: , mismatch: 8, identity: 0.733

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
tgttgcaatttatataaaaaatttgttgga	Protospacer
  ******  *************** *   

39. spacer 2.6|1431776|30|NC_017280|PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atttgcaaggtatataaaaaatttgatttt	CRISPR spacer
tgttgcaatttatataaaaaatttgttgga	Protospacer
  ******  *************** *   

40. spacer 2.9|1431775|31|NC_017280|CRISPRCasFinder matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

atttgcaaggtatataaaaaatttgattttg	CRISPR spacer
tgttgcaatttatataaaaaatttgttggaa	Protospacer
  ******  *************** *   .

41. spacer 2.9|1431775|31|NC_017280|CRISPRCasFinder matches to NC_022782 (Bacillus toyonensis BCT-7112 plasmid pBCT77, complete sequence) position: , mismatch: 9, identity: 0.71

atttgcaaggtatataaaaaatttgattttg	CRISPR spacer
tgttgcaatttatataaaaaatttgttggaa	Protospacer
  ******  *************** *   .

42. spacer 2.9|1431775|31|NC_017280|CRISPRCasFinder matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

atttgcaaggtatataaaaaatttgattttg	CRISPR spacer
tgttgcaatttatataaaaaatttgttggaa	Protospacer
  ******  *************** *   .

43. spacer 1.1|1329750|34|NC_017280|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **