CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014560	Helicobacter pylori SJM180, complete genome	4 crisprs	RT,cas14k,DEDDh	0	3	1	0

1. NC_014560

CRISPR-Cas detection and classification

Crispr_ID: NC_014560_1

• CRISPR_ID: NC_014560_1
• CRISPR_location: 25838-25937
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_014560_1

Consensus_repeat	Method
AAACACTCAAGGGTTCTTTAAAAAAG	CRISPRCasFinder

spacers of NC_014560_1

>1.1|25864|48|NC_014560|CRISPRCasFinder
CGGTGGTTTCAATGAAACGCTAATTTCTAAGAGCGTTCCCTAAACTTA

CRISPR arrays and Neighbor proteins around NC_014560_1

CRISPR arrays

The CRISPR arrays of NC_014560_1

>merge|NC_014560|1|25838-25937|CRISPRCasFinder
AAACACTCAAGGGTTCTTTAAAAAAGCGGTGGTTTCAATGAAACGCTAATTTCTAAGAGCGTTCCCTAAACTTAAAACGCTCAAGGGTTCTTTAAAAAAG

>NC_014560|1|1|25838-25937|CRISPRCasFinder
AAACACTCAAGGGTTCTTTAAAAAAG	CGGTGGTTTCAATGAAACGCTAATTTCTAAGAGCGTTCCCTAAACTTA
AAACGCTCAAGGGTTCTTTAAAAAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_014560.1|WP_000117427.1|26086_27367_-|citrate-synthase	unknown	unknown	gnl|CDD|180164
NC_014560.1|WP_000142271.1|34900_35254_+|aspartate-1-decarboxylase	unknown	unknown	gnl|CDD|376751
NC_014560.1|WP_000897514.1|29413_30070_-|dethiobiotin-synthase	unknown	unknown	gnl|CDD|223210
NC_014560.1|WP_000766930.1|28903_29437_+|DUF1523-family-protein	unknown	unknown	gnl|CDD|369397
NC_014560.1|WP_000713907.1|20657_21230_-|lipid-A-1-phosphatase-LpxE	unknown	unknown	gnl|CDD|181978
NC_014560.1|WP_000202349.1|21240_22812_-|phosphoethanolamine--lipid-A-transferase-EptA	unknown	unknown	gnl|CDD|236581
NC_014560.1|WP_000689461.1|16957_18367_+|hypothetical-protein	unknown	unknown	gnl|CDD|225559
NC_014560.1|WP_001023005.1|31992_32406_+|universal-stress-protein	unknown	unknown	gnl|CDD|366180
NC_014560.1|WP_000726349.1|23388_25464_-|outer-membrane-protein	unknown	unknown	gnl|CDD|375731
NC_014560.1|WP_000890259.1|14358_16722_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl|CDD|273346
NC_014560.1|WP_000357227.1|32682_34911_+|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl|CDD|223616
NC_014560.1|WP_000347926.1|35256_35559_+|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl|CDD|179646
NC_014560.1|WP_000926149.1|30073_31882_-|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000323989.1|27564_28842_+|isocitrate-dehydrogenase-(NADP(+))	unknown	unknown	gnl|CDD|180792
NC_014560.1|WP_000584956.1|14093_14357_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000760824.1|19430_20648_+|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NC_014560.1|WP_000781795.1|32407_32683_+|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl|CDD|225038
NC_014560.1|WP_001154970.1|12838_13666_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_001272690.1|13812_14094_+|TrbC/VirB2-family-protein	unknown	unknown	gnl|CDD|368210
NC_014560.1|WP_000785455.1|18468_19434_+|chemotaxis-protein-CheV	unknown	unknown	gnl|CDD|223905

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_014560.1|WP_000117427.1|26086_27367_-|citrate-synthase	gnl|CDD|180164	PRK05614, gltA, citrate synthase.	0
NC_014560.1|WP_000142271.1|34900_35254_+|aspartate-1-decarboxylase	gnl|CDD|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	3.87007e-65
NC_014560.1|WP_000766930.1|28903_29437_+|DUF1523-family-protein	gnl|CDD|369397	pfam07509, DUF1523, Protein of unknown function (DUF1523).	4.12506e-67
NC_014560.1|WP_000713907.1|20657_21230_-|lipid-A-1-phosphatase-LpxE	gnl|CDD|181978	PRK09597, PRK09597, lipid A 1-phosphatase LpxE.	8.58307e-123
NC_014560.1|WP_000202349.1|21240_22812_-|phosphoethanolamine--lipid-A-transferase-EptA	gnl|CDD|236581	PRK09598, PRK09598, phosphoethanolamine--lipid A transferase EptA.	0
NC_014560.1|WP_000689461.1|16957_18367_+|hypothetical-protein	gnl|CDD|225559	COG3014, COG3014, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_014560.1|WP_001023005.1|31992_32406_+|universal-stress-protein	gnl|CDD|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.52467e-19
NC_014560.1|WP_000726349.1|23388_25464_-|outer-membrane-protein	gnl|CDD|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	3.37043e-100
NC_014560.1|WP_000890259.1|14358_16722_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl|CDD|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NC_014560.1|WP_000357227.1|32682_34911_+|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl|CDD|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_014560.1|WP_000347926.1|35256_35559_+|YbaB/EbfC-family-nucleoid-associated-protein	gnl|CDD|179646	PRK03762, PRK03762, YbaB/EbfC family nucleoid-associated protein.	2.17725e-41
NC_014560.1|WP_001272690.1|13812_14094_+|TrbC/VirB2-family-protein	gnl|CDD|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	0.00550849
NC_014560.1|WP_000897514.1|29413_30070_-|dethiobiotin-synthase	gnl|CDD|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.42381e-62
NC_014560.1|WP_000760824.1|19430_20648_+|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_014560.1|WP_000781795.1|32407_32683_+|ATP-dependent-Clp-protease-adaptor-ClpS	gnl|CDD|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	8.55788e-34
NC_014560.1|WP_000323989.1|27564_28842_+|isocitrate-dehydrogenase-(NADP(+))	gnl|CDD|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NC_014560.1|WP_000785455.1|18468_19434_+|chemotaxis-protein-CheV	gnl|CDD|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	5.84733e-36

Protein sequences

>NC_014560.1|WP_000726349.1|23388_25464_-|outer-membrane-protein
MKKKFLSLTLGSLLVSTLSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNHLLTSYSALNTLIRQSSDPNAINNARTNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSYAISPCGPGKDSSKNGGVQTFENTPTNQWGGTTITCGTTNYEPGPYSILSTENYAKINKAYQIIQKAFGTSGQDIPALSDTNTELKFTINKKNGDNNNNNNGEEIVTKNNAQVLLEQASTIITTLNSACPWINNGGAGGASSGSLWEGIYLKGDGSACGIFKNEISAIQDMIKNAAIAVEQSKIVAANAQNQHNLDTGKTFNPYKDANFAQSMFANAKAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTVTSNTWGAGCAYVGETLTSLKDSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAAISSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRRGADHSVQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY
>NC_014560.1|WP_000202349.1|21240_22812_-|phosphoethanolamine--lipid-A-transferase-EptA
MTSLFHLKFLKPLSCLQAGLLYSLIFGVLYHFPLFAYVYKESNQVSFIAMMVVVLFCVNGTLFLALGLISASLMRWSAIVFSWLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLSVKLFVFIVVFGVLPGYIIYKIPIKNSSKKAPFLAILALVFIFIASALANAKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALYGYQKPTTPRLSKRLENHELTLFNATSCATYTTASLECILDSSFKNSLGVYENLPTYLTKAGIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLLDLLKERSNENVLLILHLAGSHGPNYDNKVPLNFRAFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKIISMLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANDLFKKEHSIIQTQTPINQNVIFHSVLGVFEDFKNPSVVYRPSLDLLKHKKE
>NC_014560.1|WP_000713907.1|20657_21230_-|lipid-A-1-phosphatase-LpxE
MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLVFHFTEHYARFIPTILSVAIPLIQRDAIGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSFKKYLWLLPLIPLTMLARIYLDMHTIGAVLAGLGVGMLCVSLFTSPKKP
>NC_014560.1|WP_000760824.1|19430_20648_+|carboxynorspermidine-decarboxylase
MKKYSAIPTPCYVLESERLEKNAKILEIVCQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATSIIFNSFYQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKEHGLEGVSGLHFHTHCEQNADALCRTLEHVERHFKPYLENMAWVNFGGGHHITKSDYDVNLLIQTIKDFKERYHNIEVVLEPGEAIGWQCGFLIASVIDIVQNDQEIAILDASFSAHMPDCLEMPYRPSILKVSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFEKPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKLDQQGFKILKNFSYEDYKNRN
>NC_014560.1|WP_000785455.1|18468_19434_+|chemotaxis-protein-CheV
MADSLAGIDQVTSLHKNNELQLLCFRLGKNKDLYAVNVFKIREVVKYHGNLTIISHENNSLVEGLIIIRELTIPLIDMKKWFYYDSQNKNKDLRPYRIEKEKGEDDIVMICEFSRWTIGVRIYEADRILSKKWTEMEQSAGLGGSAGNNKLVSRTRYFDGRLVQVVDIEKMLIDVFPWIEDEKHNDLETLSKIHSNQCVLLADDSPSVLKTMQMILDKLGVKHIDFINGKTLLEHLFSPTTDVSNIGLIITDLEMPEASGFEVIKQVKNNPLTSKIPIVVNSSMSGSSNEDMARSLKADDFISKSNPKDIQRVVKQFLELA
>NC_014560.1|WP_000689461.1|16957_18367_+|hypothetical-protein
MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRVEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGISQSPFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSIALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFENYEVRADSIDAFSFSLKPCKRSLESPKIIDARELLSGFVTAPQIFCSNRHNILYVRSFKNGFVLSRLK
>NC_014560.1|WP_000890259.1|14358_16722_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MLEKFLGAIKQKVSNYFLGALPKSYSMSEENNILGLYDEHFLLTKNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALDSLEKVVARLVVKRRKIDYQQNIQSDSKHLQAILNQFENKEVYENRYFLVLESAHSLQGVLEHKKKSLMHANRENFKDILSYKVHFLQETLKSLEIQLKNYAPKLLSSKEVLNFYAEYINGFDLPLKPLVGGYLSDSYIASSITFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAVGALLYQETPLDIIFSIEPMSVHKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNILIKAPSLEDLDAQTSLVLGLLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFERQNLGFKANSWGNSPLSVFKNLDYSPFLFNFHNQEVSHNNAKEIARVNGHTLVIGATGSGKSTLISFLMMSALKYQNMRLLAFDRMQGLYSFTEFFKGHYHDGQSFSINPFCLEPNLQNLEFLQSFFLSMFDLAPSRDKEALEDMNAISSAIKSLYETLYPKDFSLLDFKETLKRTSSNQLSLSLEPYLNNPLFNALNDAFNSNAFLNVINLDTITQNPKDLGLLAYYLFYKILEESRKNDSGFLVFLDEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGVKNAHSFLSNMGTLILYPQKNARELKHHFNVPLSETEISFLENTPLYARQVLVKNLGNGSSNMIDVSLEGLGRYLKIFNSDSSHVNKVKALQKDYPTEWREKLLKS
>NC_014560.1|WP_000584956.1|14093_14357_+|hypothetical-protein
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKTKTKCYRA
>NC_014560.1|WP_001272690.1|13812_14094_+|TrbC/VirB2-family-protein
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGIF
>NC_014560.1|WP_001154970.1|12838_13666_+|hypothetical-protein
MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCINNHKIILPSDPHLRVQAEPEIALECDVKYDEKHLVTKLVPNFFMAFNDASVRNLDAAKLSQKKNFSPASKGIGQKLPIDRFVYGGVCNNFSIASFLKYNNVWYIYGENSKLLKYEFFYQKLLDWIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYLPFAQEHFLQKGDEVVIIAYNHLQYSFEKIQSLLEEDALQTKEHANLSYVYQIVE
>NC_014560.1|WP_000117427.1|26086_27367_-|citrate-synthase
MSVTLINNENNERYEFETIESTRGPKAVDFSKLFETTGFFSYDPGYSSTAGCQSKISYVNGKKGELYYRGHRIEDLVAKYKYVDVCKLLLTGELPKNQDESLEFELELRHRSFIHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVEITPLEIEAFDKILTLHADHSQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKSPQARITRPRQVYVGD
>NC_014560.1|WP_000323989.1|27564_28842_+|isocitrate-dehydrogenase-(NADP(+))
MAYNPKILQKPKEGEEITIKDNKLHVPNHPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKFKDYKELSPEEQWLLPDTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGSPSPVKEPQKVDMVIFRENSEDIYAGIEWQEGSVEAKKLIHFLQNELKVKKIRFPESSGIGVKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKKVTYDFARLMDGAKEVKCSEFASVMIENM
>NC_014560.1|WP_000766930.1|28903_29437_+|DUF1523-family-protein
MKLIKFVRNVVLFILTAIFLALMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESADISKPIFSWILYALLLGGFFISVRSVCTLFKGKAH
>NC_014560.1|WP_000897514.1|29413_30070_-|dethiobiotin-synthase
MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDTTNHFSDAHLFLQDNRLLDRSLTLKDISFYRYHKASAPLIAQQEEDPNAPIDTNHLTQRLQNFTKTYDLVIVEGAGGLCVPITLEENMLDLALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLRENNTAFHSISLPYIELFNTRSNNPIVIFQQSLKELMSFALK
>NC_014560.1|WP_000926149.1|30073_31882_-|hypothetical-protein
MLLNYDFLEFVDDEPKRNTSLTASIDKALADKKLARQNKPSVRVLGKAMPLSKFLDAVGDEISRLKYDMSHKTIKGSTIESSNLISIYKKIASGLPFGTISAFRPFKDAFYKDFTEKEQNALIYAYKSGADPKNADIIAQYWLSQSVDLDPYDPIKVDEFFHPQPENGKETTKFKNYKDMIEDIYATLYNKLGRGYVDKFFKNRNSTMRDLMSSDKFVERYRYTRKENMARTQQLKDILNIDRDFIGYIEVLGYWKDNPKDNILPDKEVSFFVFQNEPSSTFDLKNHLLIWGKQFRQAAICYGGQMLANKNKTYRIDLISSSPNSFGKVWAKFTGIKFSVPSDLPQALTRINDSVYTFLSRNKEGIGLNKLALNKVVKTELKATCMPYDYSKLGIETIGEDIRSNIKALQKITRGYGHPKEFFLDAMIERQEQAIKRIEARKCAVSDDFKQGMKRNIKVNNLVKALRQGKKVSRTLIAKVLANTIDTDAGYCFISPTDLATQLDNISPRLSKSIVTAIEQAEGVRLNYALIDKVTYNSLHNILSFVFDIDNPLNDQAFERLVIEVPREALKNVKLPQIKNVLTAQIFDGAYQFRGNDYKFKG
>NC_014560.1|WP_001023005.1|31992_32406_+|universal-stress-protein
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQNSLVEQSSIPVVIAK
>NC_014560.1|WP_000781795.1|32407_32683_+|ATP-dependent-Clp-protease-adaptor-ClpS
MKMHQIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEIAIYKAVCVRDKARALRFPLRLMVQEVK
>NC_014560.1|WP_000357227.1|32682_34911_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MDKFNKDLNEVLSHALDLALDFNHVLCTTEHVLLAVLEHGIGIRIFNALEEDNYHKMEQILKDYLQQYIPLKNDPTKVPDRSPVLARVFKKMYASYLDSVGVEELLIFILEYDDCYASKLLDSFGITRSYFKSALLDFDNPNDINDNDINNEEAPKNTPLKKYAKNLSALAQNNALDPVIGREEEILRVIEILGRRKKNNPLLIGEAGVGKTSIAEALALKIAQKEVPEFLQEYEVYSLDLALMVAGAKYRGDFEKRLKKTLKEIQQNGRIILFIDEIHTLLGAGSSNAGSLDAANILKPVLTDGGLKCLGATTFEEYRSVFEKDKAFNRRFSVIKVEEPSKEACYLILKKIAPLYEEHHQVRYNESVFKACVDLTSYYMHDKFLPDKAIELLDEVGSRKKINPKKGKKISVDDVQETLALKLKIPKMRLNSDKKALLRNLEKSLKNKIFAQTEAINLVSNAIKIQHCGLSAKNKPVGSFLFVGPSGVGKTELAKELALNLNLHFERFDMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVNAIKKHPHCLLLLDEIEKAHPNVYDLLLQVMDNATLSDNLGNKASFKHVILIMTSNVGSKDKDTLGFFSAKNTKYDKAVKELLTPELRSRIDAIVPFNALSLEDFERIVFVELDKLKALTLEQDITLKFHKEVVKFIAQKSYQTTLGAREIKKIIHNEIKTKLSDILLLQSLKKPCKIACLLEKNQLVLKEIKCTQKVKENDF
>NC_014560.1|WP_000142271.1|34900_35254_+|aspartate-1-decarboxylase
MTFEMLYSKIHRATITDANLNYVGSITIDEDLAKFAKLREGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAAARKVAIGDVVIILAYASMNEDEINTHKPNIVLVDEKNEILEKG
>NC_014560.1|WP_000347926.1|35256_35559_+|YbaB/EbfC-family-nucleoid-associated-protein
MDFSQLGGLSGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL

Crispr_ID: NC_014560_2

• CRISPR_ID: NC_014560_2
• CRISPR_location: 552447-552597
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_014560_2

Consensus_repeat	Method
TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGC	CRISPRCasFinder

spacers of NC_014560_2

>2.1|552496|53|NC_014560|CRISPRCasFinder
GATCAGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCT

CRISPR arrays and Neighbor proteins around NC_014560_2

CRISPR arrays

The CRISPR arrays of NC_014560_2

>merge|NC_014560|2|552447-552597|CRISPRCasFinder
TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGCGATCAGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCTTTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC

>NC_014560|2|2|552447-552597|CRISPRCasFinder
TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGC	GATCAGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCT
TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_014560.1|WP_001029385.1|561190_562129_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl|CDD|273113
NC_014560.1|WP_000261561.1|538911_540357_-|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl|CDD|273198
NC_014560.1|WP_000690337.1|554232_555000_-|glutamate-racemase	unknown	unknown	gnl|CDD|272885
NC_014560.1|WP_001140248.1|540580_540883_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000040726.1|542269_543601_+|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl|CDD|235364
NC_014560.1|WP_021172839.1|543597_544506_+|GTPase-Era	unknown	unknown	gnl|CDD|224081
NC_014560.1|WP_000978736.1|541271_541724_+|50S-ribosomal-protein-L9	unknown	unknown	gnl|CDD|129262
NC_014560.1|WP_000461008.1|541727_542270_+|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl|CDD|235477
NC_014560.1|WP_079995626.1|553703_553856_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NC_014560.1|WP_000437268.1|558416_559391_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000965333.1|556844_557708_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|223390
NC_014560.1|WP_000409687.1|553813_554077_+|helicase	unknown	unknown	gnl|CDD|350195
NC_014560.1|WP_000722694.1|544502_545495_+|flagellin-deglycosylation-protein	unknown	unknown	gnl|CDD|225577
NC_014560.1|WP_000792826.1|559387_560209_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000679855.1|545679_546354_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_154017380.1|547948_548554_+|hypothetical-protein	unknown	unknown	gnl|CDD|372468
NC_014560.1|WP_001004709.1|555036_556353_-|transcription-termination-factor-Rho	unknown	unknown	gnl|CDD|236490
NC_014560.1|WP_000715278.1|556616_556820_+|50S-ribosomal-protein-L31	unknown	unknown	gnl|CDD|376487
NC_014560.1|WP_001149371.1|557720_558404_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl|CDD|129290
NC_014560.1|WP_000409687.1|548511_548775_+|helicase	unknown	unknown	gnl|CDD|350195

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_014560.1|WP_001029385.1|561190_562129_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl|CDD|273113	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_014560.1|WP_000261561.1|538911_540357_-|type-I-glutamate--ammonia-ligase	gnl|CDD|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NC_014560.1|WP_000461008.1|541727_542270_+|ATP-dependent-protease-subunit-HslV	gnl|CDD|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	3.18366e-104
NC_014560.1|WP_001149371.1|557720_558404_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl|CDD|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	3.90595e-89
NC_014560.1|WP_000040726.1|542269_543601_+|HslU--HslV-peptidase-ATPase-subunit	gnl|CDD|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_014560.1|WP_000409687.1|553813_554077_+|helicase	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	2.34141e-23
NC_014560.1|WP_000978736.1|541271_541724_+|50S-ribosomal-protein-L9	gnl|CDD|129262	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification].	2.82384e-52
NC_014560.1|WP_000690337.1|554232_555000_-|glutamate-racemase	gnl|CDD|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	8.5849e-126
NC_014560.1|WP_079995626.1|553703_553856_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	0.00634617
NC_014560.1|WP_000965333.1|556844_557708_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl|CDD|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.24308e-113
NC_014560.1|WP_021172839.1|543597_544506_+|GTPase-Era	gnl|CDD|224081	COG1159, Era, GTPase [General function prediction only].	3.34405e-123
NC_014560.1|WP_000722694.1|544502_545495_+|flagellin-deglycosylation-protein	gnl|CDD|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	7.17353e-107
NC_014560.1|WP_154017380.1|547948_548554_+|hypothetical-protein	gnl|CDD|372468	pfam13087, AAA_12, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	3.91918e-22
NC_014560.1|WP_001004709.1|555036_556353_-|transcription-termination-factor-Rho	gnl|CDD|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NC_014560.1|WP_000715278.1|556616_556820_+|50S-ribosomal-protein-L31	gnl|CDD|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.40477e-32
NC_014560.1|WP_000409687.1|548511_548775_+|helicase	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	2.34141e-23

Protein sequences

>NC_014560.1|WP_000409687.1|548511_548775_+|helicase
MEKCDFKNFDEIKIDTVDAFQGEEADIIIYSTVKTYGSLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDEKNIFSAILQVCR
>NC_014560.1|WP_154017380.1|547948_548554_+|hypothetical-protein
MEFDVTIIDETGRATAPEILIPALRTKKLILIGDHNQLPPSIDRHLLEQLESDDIQNLDAIDRQLLEESFFENLYKHILESNKAMLNEQFRMPAPIGSLVSQLFYKEKLKNGAIKNTSQFYDPKNIIRWINVEGEHQLEKTSSYNKDQVQKIIELLEQINRALNQRKIRKTIGIITPYNAQKNACDQKWKNATSRILMRSK
>NC_014560.1|WP_000679855.1|545679_546354_+|hypothetical-protein
MKHDIGFIDVSIPYQGYKLSLCLERIEDIGEFTLFCLHAFGDGLNLNELSQVTEIDFMTIQKHLDFLVKRGFFNEKHKISAYGRNILKLHDEINKFNRANRVVFLENAAREKIKRWRERQELTDCSRGWLIAGEDLSLQEFEELYNARKDIDQVLCLLDNTKDFKDVSDEIKVRLEPNGVEQFLVFKINPKVLTHAKIEGKTYIRAIHGEQECFIEIETLCKQL
>NC_014560.1|WP_000722694.1|544502_545495_+|flagellin-deglycosylation-protein
MKKILPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKSFWAEELQNKDTDFGYYQNKQFLFVADKSKPSLEFYEIDNNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQQNKLSYSSNSQKELYIEIENNQASIIMEK
>NC_014560.1|WP_021172839.1|543597_544506_+|GTPase-Era
MMKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMSDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTATHKQVLQKLQEYQKYASQFLDLVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHIIVEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYIHKRGMD
>NC_014560.1|WP_000040726.1|542269_543601_+|HslU--HslV-peptidase-ATPase-subunit
MSKLNMTPREIVAYLDEYIIEQKEAKKFIAIALRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAIKMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKTSIIKQYQALLKVEGVEIAFEDDAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQRITITKELVQSKLGDLVADENLVKYIL
>NC_014560.1|WP_000461008.1|541727_542270_+|ATP-dependent-protease-subunit-HslV
MFEATTILGYRGEFDNKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGTGDVLEAEDNKIAAIGSGGNYALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL
>NC_014560.1|WP_000978736.1|541271_541724_+|50S-ribosomal-protein-L9
MMKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIELKHPIKSTGIYEIEVKLGSGVVGVFKIDVVAE
>NC_014560.1|WP_001140248.1|540580_540883_+|hypothetical-protein
MAKSYYNEDVGGYYSKQTGKRLHGAALYNAEAKHLNGGLKQTLDQNEQLKVQIEQRDQALYYSLSLINKQDKEIQHLKNTLGSFLSALNFDIPSLDSNKS
>NC_014560.1|WP_000261561.1|538911_540357_-|type-I-glutamate--ammonia-ligase
MVVRTQNSESKIKEFFEFCKENEVEFVDFRFSDIKGTWNHIVYSFGALTHGMFKEGIPFDASCFKGWQGIEHSDMILTPDLVRYFIDPFSADVSVVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDSGLGDVAYFGAESEFFIFDSIKIKDASNSQYYEVDSEEGEWNRDKSFENGVNFGHRPGKQGGYLPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVEAADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSELALHFLGGVLHHARGLAAFTNASTNSYKRLIPGYEAPSILTYSANNRSASVRIPYGISKNSARFEFRFPDSSSNPYLAFSAILMAGMDGVKNKIDPGEAMDINLFKLTLDEIREKGIKQMPHTLRRSLEEMLADKQYLKEGQVFSEEFIQAYQSLKFNAEVFPWESKPHPFEFITTYSC
>NC_014560.1|WP_079995626.1|553703_553856_+|hypothetical-protein
MIELLEQINRALNQRKIRKTIGIITPYNAQKNACDQKWKNATSRILMRSK
>NC_014560.1|WP_000409687.1|553813_554077_+|helicase
MEKCDFKNFDEIKIDTVDAFQGEEADIIIYSTVKTYGSLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDEKNIFSAILQVCR
>NC_014560.1|WP_000690337.1|554232_555000_-|glutamate-racemase
MKIGVFDSGVGGFSVLKSLLKAQLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHQIKLLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIKQQVKDKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEESILEGELLETCMRYYFTPLKILPEVIILGCTHFPLIAQKIEGYFMEHFALPTPPLLIHSGDAIVEYLQQKYALKKNAHAFPKVEFHASGDVIWLEKQAKEWLKL
>NC_014560.1|WP_001004709.1|555036_556353_-|transcription-termination-factor-Rho
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNEK
>NC_014560.1|WP_000715278.1|556616_556820_+|50S-ribosomal-protein-L31
MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK
>NC_014560.1|WP_000965333.1|556844_557708_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFLPTPIGNLADITLRTLEVLERCEVFLCEDTRVSKRLLHLLAQNPIISHSFPNIAAKKREFIAFHSHNDQEFLNQIELSFFDKEIAVMSDAGMPSLSDPGMSLAAYALKHNIQYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLKIAKILNALAYLEEKTPVVFYESPHRLLETLKDLNDLAQGMHLFAAKELTKLHQQYYLGEISQIIERLQQNNIQGEWVLVLLNEKKIEPCMGLSALLELDLPPKIKAKIEAAMTQKNAKELYFQRLLEEKNQ
>NC_014560.1|WP_001149371.1|557720_558404_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MQAVIYGKQVVMHILNSHKEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSLARGGNHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILMDKIN
>NC_014560.1|WP_000437268.1|558416_559391_+|hypothetical-protein
MEQNKKSLENLDLSDVQNISKDISGAALEELSLKNLDKNLQILKEVGVAEICKATRIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLRAWMKEFDKVCVFKEGVGEEQNQETSPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQNSSSLKEERGQESAIKPDTKNSSFNEANPTEENKPEPTPKPKEKQEKQTEHDKQGKEAIKENPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFKKSYPLEAKNHRLLLRFGHGHLILKNNHQEQDYNDSKTRRFLYEPNKGLTLINEAQYKELQQ
>NC_014560.1|WP_000792826.1|559387_560209_+|hypothetical-protein
MKNLFLAFIVGGMLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPSVLKITFKASSNPLAFAKSINNSLNMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKRHGFDFMDIRRVSLKEWEYDFALQKIKLPNARALVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIALNLLDGVRFIHITDAKNPIILKNGISVVFDAMP
>NC_014560.1|WP_001029385.1|561190_562129_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MAIYLDFENHIKEIQNEIELALIRGDEDAKEILEKRLDKEVKSIYSNLTDFQKLQLARHPDRPYAMDYIDLILKDKYEVFGDRHYNDDKAIVCFIGKIDNVPVVVIGEEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEYSIFSVISPEGCAAILWDDPSKTEVAIKAMKITPRDLKEAGLIDDIILEPSKGAHRDKFSAANTIKEYFLDALRTIQQDPHFLDNRYQKLMSLGSFVEGMN

Crispr_ID: NC_014560_3

• CRISPR_ID: NC_014560_3
• CRISPR_location: 905925-906013
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_014560_3

Consensus_repeat	Method
TTTTTTAAACGCCTCCAATTTTACCT	CRISPRCasFinder

spacers of NC_014560_3

>3.1|905951|37|NC_014560|CRISPRCasFinder
TTTTACATACTCTAACCACAAATTCCAATGAGAGAAG

CRISPR arrays and Neighbor proteins around NC_014560_3

CRISPR arrays

The CRISPR arrays of NC_014560_3

>merge|NC_014560|3|905925-906013|CRISPRCasFinder
TTTTTTAAACGCCTCCAATTTTACCTTTTTACATACTCTAACCACAAATTCCAATGAGAGAAGTTTTTTAAACGCCTCCCATTTTACCT

>NC_014560|3|3|905925-906013|CRISPRCasFinder
TTTTTTAAACGCCTCCAATTTTACCT	TTTTACATACTCTAACCACAAATTCCAATGAGAGAAG
TTTTTTAAACGCCTCCCATTTTACCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_014560.1|WP_013356424.1|915478_915745_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl|CDD|379750
NC_014560.1|WP_001135633.1|914137_914662_+|acyl-CoA-thioesterase	unknown	unknown	gnl|CDD|224523
NC_014560.1|WP_000646774.1|897979_898711_+|NYN-domain-containing-protein	unknown	unknown	gnl|CDD|224349
NC_014560.1|WP_000913539.1|903073_904534_+|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl|CDD|367301
NC_014560.1|WP_154017375.1|899764_900376_-|DUF3519-domain-containing-protein	unknown	unknown	gnl|CDD|152468
NC_014560.1|WP_000051000.1|901142_902981_-|DUF342-domain-containing-protein	unknown	unknown	unknown
NC_014560.1|WP_001221148.1|897376_897850_-|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl|CDD|366907
NC_014560.1|WP_000912775.1|916181_916448_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl|CDD|379750
NC_014560.1|WP_001134067.1|915725_916103_-|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000247349.1|893162_894680_-|catalase	unknown	unknown	gnl|CDD|163712
NC_014560.1|WP_013356423.1|915157_915400_-|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000479946.1|895000_897376_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|273808
NC_014560.1|WP_000635112.1|900565_901117_-|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl|CDD|129193
NC_014560.1|WP_000828886.1|892142_893018_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NC_014560.1|WP_000405561.1|906218_910103_+|autotransporter-domain-containing-protein	unknown	unknown	gnl|CDD|111576
NC_014560.1|WP_000921454.1|912170_913151_-|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|376439
NC_014560.1|WP_000538069.1|913143_913998_-|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|187632
NC_014560.1|WP_000242348.1|911403_912171_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224045
NC_014560.1|WP_079995588.1|910220_911288_-|glycosyltransferase-family-8-protein	unknown	unknown	gnl|CDD|224359
NC_014560.1|WP_001206518.1|891842_892058_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_014560.1|WP_013356424.1|915478_915745_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl|CDD|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	7.39411e-33
NC_014560.1|WP_000646774.1|897979_898711_+|NYN-domain-containing-protein	gnl|CDD|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	1.35322e-27
NC_014560.1|WP_000913539.1|903073_904534_+|murein-biosynthesis-integral-membrane-protein-MurJ	gnl|CDD|367301	pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologs of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.	5.5955e-117
NC_014560.1|WP_001135633.1|914137_914662_+|acyl-CoA-thioesterase	gnl|CDD|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	5.86595e-64
NC_014560.1|WP_154017375.1|899764_900376_-|DUF3519-domain-containing-protein	gnl|CDD|152468	pfam12033, DUF3519, Protein of unknown function (DUF3519). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 117 to 1154 amino acids in length. This protein has a single completely conserved residue Q that may be functionally important.	4.04572e-26
NC_014560.1|WP_001221148.1|897376_897850_-|crossover-junction-endodeoxyribonuclease-RuvC	gnl|CDD|366907	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC. This entry includes endodeoxyribonucleases found in bacteria, such as RuvC. RuvC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli RuvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices. The Escherichia coli RuvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination. RuvC protein (EC:3.1.22.4) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo.	3.73477e-81
NC_014560.1|WP_000247349.1|893162_894680_-|catalase	gnl|CDD|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NC_014560.1|WP_000479946.1|895000_897376_+|TonB-dependent-receptor	gnl|CDD|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.40423e-42
NC_014560.1|WP_000635112.1|900565_901117_-|Holliday-junction-branch-migration-protein-RuvA	gnl|CDD|129193	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair].	2.04102e-67
NC_014560.1|WP_000912775.1|916181_916448_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl|CDD|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	2.53617e-33
NC_014560.1|WP_000405561.1|906218_910103_+|autotransporter-domain-containing-protein	gnl|CDD|111576	pfam02691, VacA, Vacuolating cyotoxin. This family consists of Vacuolating cyotoxin proteins form Proteobacteria. These proteins are an important virulence determinate in H. pylori and induce cytoplasmic vacuolation in a variety of mammalian cell lines.	0
NC_014560.1|WP_000921454.1|912170_913151_-|iron-ABC-transporter-permease	gnl|CDD|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.31243e-66
NC_014560.1|WP_000538069.1|913143_913998_-|SDR-family-oxidoreductase	gnl|CDD|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.16334e-91
NC_014560.1|WP_000242348.1|911403_912171_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	8.01623e-100
NC_014560.1|WP_079995588.1|910220_911288_-|glycosyltransferase-family-8-protein	gnl|CDD|224359	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane].	8.36067e-98

Protein sequences

>NC_014560.1|WP_000913539.1|903073_904534_+|murein-biosynthesis-integral-membrane-protein-MurJ
MLKKIFLTNSLGILCSRIFGFLRDLMMANILGAGVYSDIFFVAFKLPNLFRRIFAEGSFSQSFLPSFIRSSIKGSFASLVGLIFCGVLLIWCLLVALNPLWLAKLLAYGFDEEKLKLCAPIVAINFWYLLLVFITTFLGALLQYKHSFFASAYSTSLLNLCMILALFVSKEKTHLEALYYLSYGVLLGGVAQILLHFYPLVKLGLWALLFKGLLGFKTKNAAKKKYRSQRVKKDLKGFFKQFLPSVLGNSTTQIASFLDTTIASFLASGSVSYLYYANRVFQLPLALFAIAISTALFPSIAIAIKNNQQDLILQRLQKAWFFLVGVLLLCSIGGIMLSKEITELLFERGQFSPKDTLITSQVFSLYLLGLLPFGLTKLFSLWLYAKLEQKKAAKISLISLFLGLAASLSLMPLLGVLGLALANSLSGLFLFVLTIKAFGFQLFLGIIKNLKSWLVILFLACVEILLLLAFKSWVTHLYLFYYFQGF
>NC_014560.1|WP_000051000.1|901142_902981_-|DUF342-domain-containing-protein
MSLEHFAPIKVERCKDIQKELKKAAAENKLQDLWFEILRTSIFIKNSAKDDFSEAFGGELQQLEEDEYYEKKELTLYQTHDIKIKSNAYKRFFEVEVDEHLSKIEIVLDECFIVLDTEEHYQEMFAYIKECLAFEGVVFRHLSQMYENLKIELRKYKKEAQNKRFILYASSTFIPNAEEQSHFLLEEEYLPTHIIPLSDQEEFFVKENDYIAKENQKVACVNYPKQGKDGRNLKGLYIELPKVANSPTPIGHDKNAFEEREENNALVYYSKVLQGVKMEKGRLVSKQNFIFKNGIKSIETPNLLGGVESGLVLEIQAKDELSDAIDSNLILEASAINIKGNVGKNVILVAKEITIEGQIHPESYVYANKARITNHKGVCYAKEFECKYLERAKVYANSVKVEASAGSVVYAKEIALEKLKSDNKLYFSKQCLIDEVDGNGNRFIFYAFGGRENQEELKAAKQKLNALGLKSKKIIAQHQSLNHLVKNHQAIMEKLKNATEEIKRSLMQQESVKDAYSEFMFALKRLKILKAQMLELQKINNECYAKLISIENSFQHASVMTKNPFKQENIVIYHRNYPKVSNLTAMLSHNESVNVIYEDHKIKKVPKSAIKG
>NC_014560.1|WP_000635112.1|900565_901117_-|Holliday-junction-branch-migration-protein-RuvA
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPVRNEVFLALESLGFKSTEINQVLKTLKPHLSIEAAIKEALQQLHS
>NC_014560.1|WP_154017375.1|899764_900376_-|DUF3519-domain-containing-protein
MDESKLTKEQKQVLKVFKGELDKGEIKGIDLNDLYILDQGTRHAGAKKILVKHYGEESTGGLTNEELINMSEVIKNGSVLLESFERIKNGFRYAYEYEHDGVKLRLVVDDLNNGNKIFDFYSDRNFTDFRDASLHSGNHPYENNPTTKPLNSQEDLLKNTELENETTQEVKNLSPLEQANAEKHELTLKTMQKMHKTKHKMKL
>NC_014560.1|WP_000646774.1|897979_898711_+|NYN-domain-containing-protein
MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTKTNWALN
>NC_014560.1|WP_001221148.1|897376_897850_-|crossover-junction-endodeoxyribonuclease-RuvC
MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIEDIFFAYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLKLH
>NC_014560.1|WP_000479946.1|895000_897376_+|TonB-dependent-receptor
MFLRSYPKLRYALCLPLLTETCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGVEDRLLRVTVDGAAQNGNIYHHQGNTVIDPGMLKSVEVTKGAANASAGPGAIAGVIKMETKGAADFIPRGKNYAASGAVSFYTNFGDRETFRSAYQNAHFDIIAYYTHQNIFYYRSGATAMKNLFNPTQADKEPGTPSEQNNALVKMNGYLSDRDTLTFSWNMTRDNATRPLRSNAIGLAYPCEAPFSPDSSQGCPNVLDSFTRYMYHSINSANNLSLQYKREAGNSFGDPRLDFTLYTSIRNAQFDPLFDPNGVYAKFPTSLASAWEKENYPCVEGGYCTPSFSDVDKPSSQPRNLFLNNTGLNLKVAHVIDEATDSLFEYGFNYQNLSVFDARIPKSELYRPNQVYTDDKGQKQIACALVDNNPNDPTLCQRGKANGNIYGGYVQANYSPHKIITFGAGVRWDAYTLYDKDWNHRYTQGFSPSAALVLSPIEPLSLKITYSQVTRGVMPGDGVYMRQNDLRYAKNIKPEVGSNAEFNIDYSSQYFSGRAAAFYQALDNFISQYAQNLIVTNLSQAIRIYGYEVGGTFRYKGVSLNVGISRTWPTTRGYLMADSYELAASTGNVFIIKLDYTIPKTGINLAWLSRFVTGLDYCGFDIYLPDYGTAEKPKTPTDLAKCGSKLGLVHMHKPGYGVSNFYINWSPKTKSRWKGLLLSAVFNNVFNKFYVDQTSPYVMSPDMPGTDAVKRVIAEPGFNARFEVAYKW
>NC_014560.1|WP_000247349.1|893162_894680_-|catalase
MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFETMQGVKHLTNEEAAEIRKYDPDSNQRDLFNAIARGDFPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENYFAEVEQAAFSPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEKHQKMMKDMHGKDMHHTKKKK
>NC_014560.1|WP_000828886.1|892142_893018_-|twin-arginine-translocation-signal-domain-containing-protein
MKRRDFIKTTALGATGAVLGAQILQAEESKGSAAKYKIEAQYNIDFDSAEHTSLFIPMPSVVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRDSLPWFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHKEVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
>NC_014560.1|WP_001206518.1|891842_892058_-|hypothetical-protein
MREFFKKLGTEYASKLFLIYWLRWMLSALVMLPFMEVFYYFNFPLWLNLFLGQTIGAVIFFKLDKLIFSKK
>NC_014560.1|WP_000405561.1|906218_910103_+|autotransporter-domain-containing-protein
MEIQQTQKMNRPLVSLVLAGALISAIPQESHAAFFTTVIIPAIVGGIATGTAVGTVSGLLSWGLKQAEEANKTPDKPDKVWRIQAGNGFNEFPNKEYDLYQSLLSSKIDGGWDWGNAARHYWVKGGQQNKLEVDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSADRTTRVNFNAKNISIDNFVEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVDFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNNTPSQSGTKNDKNESAKNDKQESSQNNSNTQVINPPNNTQKTEIQPTQVIDGPFAGGKDTVVNIDRINTNADGTIRVGGYKASLTTNAAHLHIGKGGVNLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDINLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINELIVKTNGISVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKFKGGEKLVIDEFYYSPWNYFDARNIKNVEITRKLASSTPENPWGTSKLMFNNLTLGQNAVMDYSQFSNLTIQGNFINNQGTINYLVRDGKVATLSVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEHVLLKAKIIGYGNVSTGTNGISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACGMAIGNQSMVNNPDNYKYLIGKAWKNIGISKTANGSKISVYYLGNSTPSENGGNTTNLPTNTTNNARSANYALVKNAPFAHSATPNLVAINQHDFGTIESVFELANRSKDIDTLYTHSGAKGRDLLQTLLIDSHDAGYARQMIDNTSTGEITKQLNAATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNNIDSFAQRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNNGSNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFNNRANSLNSGANNTNFGVYSRLFANQHEFDFEAQGALGSDQSSLNFKSTLLQDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSTNKVALKNGSSSQHLFNANANVEARYYYGDTSYFYLHAGVLQEFAHFGSNDVASLNTFKINAARSPLSTYARAMMGGELRLAKEVFLNLGVVYLHNLISNASHFASNLGMRYSF
>NC_014560.1|WP_079995588.1|910220_911288_-|glycosyltransferase-family-8-protein
MVVAFDNNYCIPAGVSLYSMLLNAKRERDGVKLFYQIHCLVDSLSAENAEKLKRTMSPFSAFSGIKFCDISKNDAYPFTLVSQLFLRLNPFAKKRFSKMILCRLLLASIFPQYEKIIMFDVDTLFVGDISESFFISMDGEYFGATKEDLSLIGIHSANDLFVSRLNWSKGVGVKLNHKSLSFQEVGILYENPFNAGFMLVNLALWRESHLEEKLIDFFKTRDEGLLLPEQDLFVLVCQGRILEMPCKYNVHPRMVGTRMIPKKSDACMLHFYADEKPWKHFGYPYSKEWHQVAFKTSFESLVFENLVGKIETFTELNDHNKKSFFEFLNTRLNKKFLIQYVLFKIFKKLESFCLR
>NC_014560.1|WP_000242348.1|911403_912171_-|ABC-transporter-ATP-binding-protein
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDDKLVVYAL
>NC_014560.1|WP_000921454.1|912170_913151_-|iron-ABC-transporter-permease
MLKTYHIALACVILAVVVLLFGGESLSLEEWKEVCLNVKNHFLHNEELSSLSVIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDPFLLGISSGAMLGVAMAIAVVESNIAILAFFGAILASLAVLAMNRVLGNSVLSLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCLIAFIGLSLGFIPLFLLRWRINLLSLSDAQSLSLGINPVLLRSLCLVCVSVASALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDLPVGIATSVLGAPFFLWLLFRTRGV
>NC_014560.1|WP_000538069.1|913143_913998_-|SDR-family-oxidoreductase
MGVGEKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALCESVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFESEDSLYALEVNAAKTFYASVYQNALSPKVVAQKIVFLSMSQKIKARYLIGLKTQLLLALYQIFPSSWYDSLFRLIVLKRKRDA
>NC_014560.1|WP_001135633.1|914137_914662_+|acyl-CoA-thioesterase
MPQIQSSHSSHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTRYCTKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHENI
>NC_014560.1|WP_013356423.1|915157_915400_-|hypothetical-protein
MPNTTKKDYTKYSQKQLFNLINQLEQKISQAFDDKRDCCFGHEIPNIQTQQAMREALNGVNLTQIDSLDDLTNELKREKR
>NC_014560.1|WP_013356424.1|915478_915745_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MLKLNLKKSFQKDFDKLLLNGFDDSVLKEVILTLRKKEPLDPRFQDHALKGKWKPFRECHIKSDILLVYLVKDDELILLRLGSHSELF
>NC_014560.1|WP_001134067.1|915725_916103_-|hypothetical-protein
MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCFGHETPNIQTQQAMRDADNKETDLFVEDFSSYSNERKKALGVEAQS
>NC_014560.1|WP_000912775.1|916181_916448_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MLKIKHHILYKKDFKKLVKNGFDDSVLNKVILTLRKKEPLDPQFKDHALKGKWKPFRECHIKADILLVYLVQDDELILLRLGSHSELF

Crispr_ID: NC_014560_4

• CRISPR_ID: NC_014560_4
• CRISPR_location: 950396-950593
• CRISPR_type: Orphan
• Repeat_type: I-B
• Spacer_info: 3 spacers

Consensus repeat of NC_014560_4

Consensus_repeat	Method
TTCAATCAAGGCACTTATAA	PILER-CR
TTCAATCAAGGCACTTATAATTTTAAT	CRISPRCasFinder

spacers of NC_014560_4

>4.1|950416|40|NC_014560|PILER-CR
CTTTAGTAACAGCGCAAGTTCAAGCTTTGATAATAGTAGT
>4.2|950476|37|NC_014560|PILER-CR
CTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAAT
>4.3|950533|34|NC_014560|PILER-CR
TTTTAATGACAATACTAGCTTTAATAACGACACC
>4.4|950423|33|NC_014560|CRISPRCasFinder
AACAGCGCAAGTTCAAGCTTTGATAATAGTAGT
>4.5|950483|30|NC_014560|CRISPRCasFinder
AGCGCCCAATCCACTTTTGAAAACAGCAAT
>4.6|950540|27|NC_014560|CRISPRCasFinder
GACAATACTAGCTTTAATAACGACACC

CRISPR arrays and Neighbor proteins around NC_014560_4

CRISPR arrays

The CRISPR arrays of NC_014560_4

>merge|NC_014560|4|950396-950593|PILER-CR,CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAGTAACAGCGCAAGTTCAAGCTTTGATAATAGTAGTTTCAATCAAGGGAGTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAATTTCAATCAAGGCACTTATAATTTTAATGACAATACTAGCTTTAATAACGACACCTTCAATCAAGGCACTTATAATTTTAAT

>NC_014560|4|1|950396-950586|PILER-CR
TTCAATCAAGGGACTTATCA	CTTTAGTAACAGCGCAAGTTCAAGCTTTGATAATAGTAGT
TTCAATCAAGGGAGTTATCA	CTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAAT
TTCAATCAAGGCACTTATAA	TTTTAATGACAATACTAGCTTTAATAACGACACC
TTCAATCAAGGCACTTATAA

>NC_014560|4|4|950396-950593|CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAGT	AACAGCGCAAGTTCAAGCTTTGATAATAGTAGT
TTCAATCAAGGGAGTTATCACTTTAAT	AGCGCCCAATCCACTTTTGAAAACAGCAAT
TTCAATCAAGGCACTTATAATTTTAAT	GACAATACTAGCTTTAATAACGACACC
TTCAATCAAGGCACTTATAATTTTAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_014560.1|WP_001099603.1|958418_959000_+|recombination-protein-RecR	unknown	unknown	gnl|CDD|273176
NC_014560.1|WP_001160291.1|956888_957998_+|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl|CDD|280099
NC_014560.1|WP_000998417.1|941276_943724_-|TonB-dependent-receptor	unknown	unknown	gnl|CDD|224544
NC_014560.1|WP_000688618.1|948537_949536_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|273675
NC_014560.1|WP_000722448.1|962527_963331_+|5'/3'-nucleotidase-SurE	unknown	unknown	gnl|CDD|234732
NC_014560.1|WP_001248514.1|939485_941030_-|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl|CDD|334957
NC_014560.1|WP_000976366.1|935413_936961_+|Hop-family-adhesin-AlpA	unknown	unknown	gnl|CDD|280099
NC_014560.1|WP_000037491.1|963327_963987_+|hypothetical-protein	unknown	unknown	unknown
NC_014560.1|WP_000426946.1|961061_961604_+|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl|CDD|129173
NC_014560.1|WP_001126557.1|944343_947601_-|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl|CDD|235393
NC_014560.1|WP_000236804.1|963988_964591_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl|CDD|223792
NC_014560.1|WP_000894568.1|932561_934589_+|ATP-dependent-helicase	unknown	unknown	gnl|CDD|223288
NC_014560.1|WP_000070331.1|961619_962531_+|polyprenyl-synthetase-family-protein	unknown	unknown	gnl|CDD|223220
NC_014560.1|WP_001240281.1|947699_948392_-|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl|CDD|198414
NC_014560.1|WP_001115881.1|958064_958271_-|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl|CDD|129125
NC_014560.1|WP_001052347.1|958996_960142_+|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl|CDD|272903
NC_014560.1|WP_001230021.1|943907_944339_-|hypothetical-protein	unknown	unknown	gnl|CDD|376519
NC_014560.1|WP_000812522.1|936982_938584_+|Hop-family-adhesin-AlpB	unknown	unknown	gnl|CDD|280099
NC_014560.1|WP_079995589.1|960080_961061_+|zinc-metalloprotease-HtpX	unknown	unknown	gnl|CDD|235081
NC_014560.1|WP_079995631.1|931419_932553_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|223897

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_014560.1|WP_001099603.1|958418_959000_+|recombination-protein-RecR	gnl|CDD|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.90004e-96
NC_014560.1|WP_001160291.1|956888_957998_+|Hop-family-outer-membrane-protein-HopJ/HopK	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.43456e-47
NC_014560.1|WP_000998417.1|941276_943724_-|TonB-dependent-receptor	gnl|CDD|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	1.34133e-35
NC_014560.1|WP_000688618.1|948537_949536_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	5.7824e-160
NC_014560.1|WP_000722448.1|962527_963331_+|5'/3'-nucleotidase-SurE	gnl|CDD|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.23927e-126
NC_014560.1|WP_001248514.1|939485_941030_-|outer-membrane-beta-barrel-protein-HofG	gnl|CDD|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	3.55006e-179
NC_014560.1|WP_000976366.1|935413_936961_+|Hop-family-adhesin-AlpA	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.02224e-54
NC_014560.1|WP_000426946.1|961061_961604_+|GTP-cyclohydrolase-I-FolE	gnl|CDD|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	8.11827e-105
NC_014560.1|WP_001126557.1|944343_947601_-|carbamoyl-phosphate-synthase-large-subunit	gnl|CDD|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_014560.1|WP_000236804.1|963988_964591_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl|CDD|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	1.49759e-21
NC_014560.1|WP_000894568.1|932561_934589_+|ATP-dependent-helicase	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.00714e-136
NC_014560.1|WP_000070331.1|961619_962531_+|polyprenyl-synthetase-family-protein	gnl|CDD|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.75546e-75
NC_014560.1|WP_001240281.1|947699_948392_-|Bax-inhibitor-1/YccA-family-protein	gnl|CDD|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.69052e-52
NC_014560.1|WP_001115881.1|958064_958271_-|4-oxalocrotonate-tautomerase-family-protein	gnl|CDD|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.46126e-26
NC_014560.1|WP_001052347.1|958996_960142_+|tRNA-pseudouridine(13)-synthase-TruD	gnl|CDD|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	4.55254e-141
NC_014560.1|WP_001230021.1|943907_944339_-|hypothetical-protein	gnl|CDD|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	1.16872e-05
NC_014560.1|WP_000812522.1|936982_938584_+|Hop-family-adhesin-AlpB	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.20095e-53
NC_014560.1|WP_079995589.1|960080_961061_+|zinc-metalloprotease-HtpX	gnl|CDD|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NC_014560.1|WP_079995631.1|931419_932553_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.50211e-54

Protein sequences

>NC_014560.1|WP_000688618.1|948537_949536_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDTNPQLEVVGINDPANWEILTYLLEHDSVHGLLFKEARYSNHKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEQQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAFKDPINDLLMEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NC_014560.1|WP_001240281.1|947699_948392_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSRNAYAEDSVLHESELVGFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIVALFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK
>NC_014560.1|WP_001126557.1|944343_947601_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAISEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEAIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARMHLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKTIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLRVEILDEIERVSAKIALHLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSNGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVELGFELCATEGTHKALEKAGVESLKVLKISEGRPNVMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLILALEESSKEDELLALQDYLK
>NC_014560.1|WP_001230021.1|943907_944339_-|hypothetical-protein
MALVYLVQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCAYDEEIASKLADVVVSDERGLFESSSSKIFRLYKDKKVRIR
>NC_014560.1|WP_000998417.1|941276_943724_-|TonB-dependent-receptor
MNDKRFRKYCSFSIFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETIMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNKVTASPSEQNNVMAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPDDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIAASIPFTPNPQLSQGEENQCVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVMGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNAEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYKIPRTGLSITWLSRFVTDLDYCSYSPYRNGPTDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NC_014560.1|WP_001248514.1|939485_941030_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NC_014560.1|WP_000812522.1|936982_938584_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTSNIQQCGATNSGSSGTAANGTTAAATTSSSPCFQGNLALYNEMVRSIKTLSQDLKNNTFQGDNNTTSANLSNQLSNLNTASVYLTYMNSFLNANNQAGGIFQNNTNQVYGNGVTAQQIAYVLKQASITMGPSGNGGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVDTSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVSALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLKNSPQLANRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NC_014560.1|WP_000976366.1|935413_936961_+|Hop-family-adhesin-AlpA
MMKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPEKLNGNDVSANALLGGAVGSGTCAAAGTAGSNSLTTQSACTAAGYYWLPSLSDRVLSTIGSQTNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALEAKNGTSGASGATGQNGQTYSQDAIKYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSRSVYNELSKNPISGSAANSAGIDSNQANAVQGRANQLSNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NC_014560.1|WP_000894568.1|932561_934589_+|ATP-dependent-helicase
MLETLQLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSTKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICVLLFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVINKAFHSHPVLMHPKISLNGAKMLSDFFTLYTKAPIHSPSALIKHIIESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGHFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NC_014560.1|WP_079995631.1|931419_932553_+|class-I-SAM-dependent-methyltransferase
MYQLDIKTLGQVFTPKNIVDFMLTLKQNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIVPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPNGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKVFPNAMPNCVIFRFCKGNFSRITNDSLQFVCKKGILYFLNQSYTQKLSEVFQVKVGAVSGCDKIFKNETYGNLEFVTSITKRTNVLEKMVFVNEPNDYLLQHKDSLMQRKIKKFNENNWYQWGRMHHISPKKRIYVNAKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLN
>NC_014560.1|WP_001160291.1|956888_957998_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQFPKALLHSSFFLPLFLSYCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNQIYKLNQVKNEITNMPNTFNYINNALKNNSKLTPTEIQAEQYYLQSTLEGIEKIVALSGGVASNPQLAQALEKMQEPATNPLELVENLRNLELQFAQSQNRMLSSLSSQIAQISNSLNALDPNSYSKNVSSMYGVSLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNEQKHSSVGFYLGFALAGSSWVGSGLSMWVSQRGFINNYLTGYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NC_014560.1|WP_001115881.1|958064_958271_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NC_014560.1|WP_001099603.1|958418_959000_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIGEDIKEIIFAFPPTLANDSLMLYIEDKLQHLHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NC_014560.1|WP_001052347.1|958996_960142_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLHIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVNSNALKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAVPTGLLDGKKALYAKNLSFEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NC_014560.1|WP_079995589.1|960080_961061_+|zinc-metalloprotease-HtpX
MRARCSKKSNMRKEKIMTNFEKIIAQNRLKTNAVLATYCAIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITIIMFLAAFVIIVICVQNFSSIMLSGDEYKLIDTSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLLLQIVLPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYANNDYKGIDQNSTRSAAYLFNAEMFSTHPSVKNRIQSLSRRVI
>NC_014560.1|WP_000426946.1|961061_961604_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSICEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NC_014560.1|WP_000070331.1|961619_962531_+|polyprenyl-synthetase-family-protein
MSNPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNASLRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSVNGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDGTKNSFVNLLGLEKASGYAQTLKTEVLNDLNLLKTAYPLLQENLNALLNTLFKGKT
>NC_014560.1|WP_000722448.1|962527_963331_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NC_014560.1|WP_000037491.1|963327_963987_+|hypothetical-protein
MSKKHRLAFLGLIIGVFFFFNACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NC_014560.1|WP_000236804.1|963988_964591_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPYFKSLVHPNCVSFSQGIQSLWHDKDFFHKIISDEKQCFFHAKPLHQIP

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014560_4	4.6|950540|27|NC_014560|CRISPRCasFinder	950540-950566	27	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1090168-1090194	5	0.815
NC_014560_4	4.5|950483|30|NC_014560|CRISPRCasFinder	950483-950512	30	MK448589	Streptococcus satellite phage Javan632, complete genome	4593-4622	6	0.8
NC_014560_4	4.5|950483|30|NC_014560|CRISPRCasFinder	950483-950512	30	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23198	7	0.767
NC_014560_4	4.5|950483|30|NC_014560|CRISPRCasFinder	950483-950512	30	NC_004303	Streptococcus phage O1205, complete genome	23169-23198	7	0.767
NC_014560_4	4.5|950483|30|NC_014560|CRISPRCasFinder	950483-950512	30	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	752261-752290	9	0.7
NC_014560_4	4.3|950533|34|NC_014560|PILER-CR	950533-950566	34	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	465746-465779	10	0.706

1. spacer 4.6|950540|27|NC_014560|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 5, identity: 0.815

gacaatactagctttaataacgacacc	CRISPR spacer
aagaatattagctttagtaacgacacg	Protospacer
.* ****.********.********* 

2. spacer 4.5|950483|30|NC_014560|CRISPRCasFinder matches to MK448589 (Streptococcus satellite phage Javan632, complete genome) position: , mismatch: 6, identity: 0.8

agcgc-ccaatccacttttgaaaacagcaat	CRISPR spacer
-ccgtaccaatcgccttttgaaaacagcaag	Protospacer
  **. ******  **************** 

3. spacer 4.5|950483|30|NC_014560|CRISPRCasFinder matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcaat	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

4. spacer 4.5|950483|30|NC_014560|CRISPRCasFinder matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcaat	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

5. spacer 4.5|950483|30|NC_014560|CRISPRCasFinder matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 9, identity: 0.7

agcgcccaatccacttttgaaaacagcaat	CRISPR spacer
tcaaggcaatctccttttgaaaacagcaac	Protospacer
   .  *****. ****************.

6. spacer 4.3|950533|34|NC_014560|PILER-CR matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 10, identity: 0.706

ttttaatgacaatactagctttaataacgacacc	CRISPR spacer
ttttaatgacattaatagctttaaacgtacccca	Protospacer
*********** ** *********  ... * * 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	181560 : 191548	9	Streptococcus_phage(42.86%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_014560|181560:191548|DBSCAN-SWA
AATGAACAAATATAGTTGCATAGATTTATTTAGTGGGGCTGGCGGTTTATCATTGGGTTTTGCGAATACAAATAGATTTAATATTTTAGCCCACATTGAGTGGGAAAAACCTATGATTACCACACTGAGAAACGATTTAATCAAACGCTTTAAAATCAGTGAATATGAGGCAAGAAAGAGAGTTATTAAATTTGATATTCAAAAAACGGATGAATTGATAAATGGCTCTTGGAGTGATGAAACTCTTAAAATTTATGGATCTGATAATGATGAAAGCGTTAGCCAATTTGGGTTAAATGGTATAATTAGTGGTAAAAAAATAGATGTTATCTTTGGCGGTCCTCCTTGTCAAGCTTATTCTCTTGCGGGTAGAGCGCAGGATAAACACTCTATGAAATATGATTATAGGAATTATCTTTTTGAAAGTTTTGTTAAGATAGTTGATTATTACCAACCACAATGCTTTGTGTTTGAAAATGTTCCTGGCATGCTTAGTGCAAAACCGGGTGATCAATTCGTAAAAGACAGGATTTATGAAGCTTTTTTAAAGATAGGTTATGAAATTAAAAAACCAGATGAAATGAAAGAGATAATCTATTCTAGCGATGATTATGAAGTCCCACAAACCAGAAAACGAGTAATTATATTTGGCGTTCGTAAAGACAATAAAGAGTGGTTATTCAAATTTTATCAAAACCTAGACAATCTCAAATCAAAAAAACCACCGCTTACCGTTAGAGACGCTATTGACCATTTACCCAAGTTTAGACCACTCAAAACACCCCTAAAAACTAGCAATAAAAACATTTCTCACGAACTTATTGGCGCAAATAATTTGACACAAAATTTTCCACGATATAATAATTTACGAGATTTAAAAGCGATGGAATTTTGGATTGAAAACAACATGAATAACGCTCCTACAAAAGAAAAGCTTGACTTTTACACTAAAATTACGGGAAAAGTCTCAAACCATAACAAATACAGAAATTTAGAATGGGATAAACCATCGCCAACCTTAGTGGCGCATTTGCAAAAAGATGGTTTTATGTTTATACACCCAGAAGCCAATCAAAGCCGCTCTATCACCATAAGAGAAGCAGCGATTTTGCAGACTTTCCCTAATGATTTTGAATTTATCGGATCGCAAGCGGCTTGTTTTAAAATGATAGGCAATGCAGTGCCAGTCAATTTTGCTAAAAATATAGCCCTAGCAGTGGCAAAGGTTTTAGATGAAAAAAACTAATATAAATATTTTAATAGCTTGTGAAGAAAGCCAAAGAGTGTGCAACGAGTTTAGAAAGCTTGGTCTCAACGCTTATAGTTGTGATTTATTGGAGTGTAGTGGCGGGCATCCTGAGTGGCATTTTAATTGCGATGTTTTTGAAGTGATTGAAAATAAAGGCGGTGTTTTGCAAAATGGCAAACATGCAAAAGTTTCACAATGGGATATGATGATAGCGCATCCGCCTTGCACTTTTTTAGCCGTTAGTGGAGCGAAGTGGTATTACCACCCTAAAGATAAAGATTTGCCCATAGAACAAAAAAGACCCCACCCCAAATTCCCAAACCGCACAAAAGACAGAGAGGAAGCTTCAAAATTCTTTATGGATTTAGTGGAAGCAAAAATCCCTTATATTGCAATAGAAAACCCCATTGGCATAATGAATACAAGATACAAAAAGCCCAATCAAATAGTCCAACCTTACCACTTTGGCGATAGCGCATCAAAAAAGACTTGTTTGTGGCTTAAAAACTTACCACCCTTAAAATATACAAATATCGTTGATCCTGGCGAGTTTATAGAATTTAAAAGCGGTAAAAAAATAGCAAAATGGTATAGCGATGGACTGACTAAAACAAGATCAGCCAAAGAGCGTCAAATTTGGAGGAGTAAAACATTTCCAGGGTTCGCAAAAGCGATGGCAGAGCAGTGGGGGGAGTTTGTAAAAAATGAGATGTTTAAAAAGGTGAAAAATGAAAGTTTATTTGAGGAAAGTTGATAAGCAATGCATCAACAAACAAATTAGTATTACAAAAGGTGTTTTAGAGCATTTTTTTGATAACGCCAACAACCAAGATGAAGTAGATATGAAAGGTATCTTATCTGATTATAACGATAAAGTTAGCATTCTTTTAGCAACAGATCCTAGACTTGGTGGAGGAATTAAGAGAATCATCAGTGCAGAAGAAGATAAAATAAAAGAAAACCGATTGGATTATGAGTTAAAGGTTGATGATGTTCTGCTTTTTACTTGTATATCTCCCAAAGAATACACATTAGAAATCATTTTACCCACTGATACAAGATACAATGTTCTAAATAGCTTAATCAGTAATAGCAAGCATTTATTGGTTCTTAGTGAGAATAAAACGAGATCTCTGAGTGATAATAAAATAGATGAAAGCGTTAGAATAGATGGGGGAAAAAATATCATTCTTTATGGTGTTCCTGGCAGTGGCAAAAGTTATACTTTACAAAGAGATTATTGCAATGATAATAGCGTGGTAGAAAAGATAGTGTTCCACCCTGATTATTCTTATAGCGATTTTGTGGGACAGATTATGCCAAGTGTGGATGATAGCGGTATAGTCAGTTATAAATTTAATCCTGGACCTTTTACAAATATCCTAAAAAAAGCGTATCATAACCCACAAACTAAGCATGTTCTAGTGATTGATGAAATCAATCGTGGTAACGCGCCTACCATATTTGGAGAAATTTTTCAACTTCTTGATAGGCTTAAACATGACAAAGATGGCTTTAAAAAAGGTTCTAGTGAGTATGCTATCAATAATATGGATATTGCAAATATTGTCCATAGCGATAAAAATGCAAGTATAAGAATCCCATCAAATTTATGGATAATCGCCACAATGAATACGAGCGATCAAAATGTATTCACGCTAGATACTGCTTTTCAGCGTAGATTTTCTATGCAGCTCATTGAAAATTCCTTTGATAATGTTGATGATGATTTTAAAAATATGAAAATTTTAGATACTGAGATTACTTGGAAAGAATTTTGCACCACCATCAATGAAAAAATAGCTCAAAATAATGAGGGGCTGAGTTCTATGGAGGATAAGCGGTTTGGCGTTTATTTTGTGAATGTTGATGATCTAAAGAGCAAAGAAAATTTTGCACATAAAGTCATCAAATACCTTTGGGATGATGTTTTTAAATTTGATAGAAATATCATATTTGATACTACAAAATTTAATACGCTTGAAGCTGTTGTAAAGAATTTTACCAAAGAAAAAGGTAGAACCCAATTTGATATTTTTAGCGATGATGTGAAAGAACTTTTATCTAATGCTTAATCTAAAAGAACGCTGTTTTACAGACAATAAATTGAACGACAATTTTGTAGGCATTAGAAGCATCAATAACGACTTACAAATCTGTTTCCCGCTAGGATTTGATATAAGCGATGATAAAAACATTAGAACAGATATAAAAAAGCTTATTTCTGTTCTTTTAGAATACAACAAAGCAATTGCATGTGAAAATTTTTTAAACAATAAAAATGAGATTATAAGATCAAGTTTTCCACTCACAGCGTATAAAAATGTCATAGAATATTTTTTATCGCATGGTTATTATACAGAAAATAAAAGCTATTATGAAAACAGCGCAAAAGGTAAAATAAATTTTTCCAAAACGATGAAGAAAAACAAACCCATTATTCAAAATTTTAACAATAAAAACTCTTTCATCTACACTCGTTTTCAAGTTAAAAAGGAAATGATCAATGAAAATGAATTGATAACAGCGATAAACAAATATTGTGTGCATGAAGCGTTTTCTAAATTTGGCTTTGTGTTTAGCTCTTTTATGCCACCAAAATTCAAACTACCTGCTGATAAAAATTATTGCATTTATCTGCTTGAAAACAGGCTAAACAACACATTTAATAATGATAAGAAAATCCTTTTTCAATCCATGAAAAACATTCTTTTACAAGATGATAATACTTTGGATAAGACTGATTTTAAATTTGGAACATATCATTTTTATGTTGTTTGGGAAAGAATGATAGATAGGGCATTTGGTATAAAAAATAAAGAAGTTTATTTTCCTAAAACAAAATGGAAGTTGCGGCGTTCTAATCAAAACCCTGATTATTTATTGCAACCAGATAGCATCATGCTGTTTGGCGATAAAATTTACATATTAGATGCAAAATATTATAAATATGGCATAAGTGGAGTTGCAAGCGATTTGCCTAGTAGTGCATCCATCATAAAACAGATTGTTTATGGCGAATATGCGGCAAAACGAGAAACAAAAAAAGAGATTTACAATGTCTTTTTAATGCCCTTTAACAGATTTAACAATCCGCTAAAATTGAGTAATATTTTTGAGAATATAGGTTTTGCAAATGGAGAGTGGAGAGACAATTTAAAACCATATGAAAAGATACAAGGAATTTTAATAGACACTAAATTTTTAATGCAAAATTATAATAAGAAATCCAATGATCTTTTAAAGTTACTGGCAAAAAATGTGGAAGAAACTAAAATATAATTTTTAAAAATTTTAATCAAAAATCAAATCTAAAACCACAAAACAAAGTTTAAAACCCCCATTTTTTAATCAAACCTGCAATGAGCGTTCTATACCATCAGCGCTTAAAGGGGTGTTGGCTTTTAAAAATTTTGATGCCTTTTGACCTAAAATTTCTTTATAAAATTTAGGGTGTAAGCCAAGGTTGGGGCGTAAGGCTTTGATATTATCGCTAGTCAATGCTTCGCCTTTTTGAATATCCTTAATGACAAATAAAGAGCGCGCAAAAAATCTTCGCTCCTCTAAAGTTTTTGGATTGATTCTTGGCTCTTCTTCGCCTAAGGCTAAAACGCTTTGCTTGATGGCTTCAACCATGCTTTTAAATCCGTTAAAATCCATGCTAAAAGCGCTGTCTGGGGTTTGTAAGGATTTGTTTAAAATGAAATGCTTTTCTATCATGCTCGCCCCTAAAGTGGTGGCTAAAATGGGGCAAAGAGAGCCAATCGTGTGATCGCTCAAGCCAAATTTAACGCCAAAGGTTTCGCCTAATTTAACCATGCTCAATAAATGAGCGTCTTCTATTTTACTGGGATAAGCGCTCACGCATTTTAAAAGGGTGATGTCAAAATTATTCACTCCTCTGCACAAAGAAATAGCGTCTTGCAATTCGGCGTGTGTAGCGATACCGCTAGAAAGGATAATGGGCTTTTGTGTGCGAGCGGCCTTTTCAATCAAGTCTAAATCAACGATTTCAAAACTAGCGATCTTATACATGGGGCAATTTAGGCTCTCTAAAAGTTCTAAAGCTTTTGAACTAAAAGGCGAGCTAAAAATGCCCAAATCAAGCTTTCTAGCCAATTCAAACAATTCCGCATGCCATTCTAGGGGGGTAGAAGCCTTTTGATACAATTCATACAAATTTTCTTTATCCCATAAAGTGCCTTGAATGATGAAAGGATCTTCTTTAGAGTTTAAAGTCATGCAGCTTGGCGTGTAGGTTTGGAGCTTGACAAAATCCGCGCCGCTTTCCTTAATGGCATGAAGGCTTTCTTTGGCGAGATTTAAATCCTGGTTATGGTTAGCGCTCAATTCAGCGACAATTTTAGGGCGTTGCAACATTTCTTATTTTTCCTTAATCAAAACTTCTTTTTCTAAGCGATAGACTTGAGAGCAAGTGAAGGCTAAATGCTCATCATGCGTGGCCAAGACTAACGCCCCTTCTTTTTCTGTAATGTAATTTTGCAGCATGCTGATGACTTGATTAGCGCTAATGGTGTCTAAATTCCCGGTGGGTTCATCAGCGATAATGATTTTAGGTTTTTTAGAAAGCACTCTGGCGATGCTTAAGCGTTGTTGCTGGCCACCGCTCAATTCACCCACGCCTTGTTTTAGGGTGTGGGCTATGCCTAATTGTTCTAAAAGGGAATGATTTATTTCTTGCTTGGCTAGGATTGAAGCGACTTGCAAGTTTTCTAAAGCGCTAAAACCCTTAAAAAGGTAATGCGATTGAAAAACGATGCCCACTTTTAAGCGCCGTAATTCCAAAAGCTTTTTGGAATTTAAGGCATAAATATCCTGGTGTTCTAACAAACTGATCGTCCCACTATTGGGTTTTAGCATGGTGGCTAGATGGCTTAAAAGCGTGCTTTTACCGCTCCCGCTCACGCCTAAAATCGCTAGGCTTTCTTTGGGCTTGATGTGCAAATTCACGCCATTATAAAGAGGCTTTTCAAAAGCATGAGAAATATTAATCGCTTTAATCATTATCGTTTCCTAAAAAGAATATCGCCTAATAAACTAGGGCTTAAAATGTAAGAAGTTGAAAAATTCGCACTGTGCAAGATGATTTTATCATAACGCCTTGCATAGTATTTTAAAAGCGTTCTTTGCAAGGTGGGTTCAATGCTTGGGCTAAACCATGCGTTATTGCTCATCACGATAAAAATTTTTGAAGGGCTGTTTGAATAAGCGGCTTTGGAAGTGCCTTCATAACAAATCAGAGGGCGAAAAGTAAAATCGTCTAATGTAAAATCGCTGAAACTAGAAGCGTTGCGGTATAAATAAGCGCTCTCGCCAAAAAAGAGCTTTTCAAGGGGTTTTTGAAGAAACTTAGGTAAAGGCATGGTCTCGCCAAAGGGGGCTAAGATCACTTTATCAGCGATCTGAACGCCCTCTTTAGAAAATAAAAACGAGCTGTTATAAAGGTTATAACCTTGAGTCCGCAATGTCCCTATTAAAATAGCAATATCATCGCTTAAATCTTCTAGTTTGGCTTTAAAGGGGGAGTTTTCTAAAGCGATGGGGTAGGCGGTCTCTGGAAAAACAATCAAGGTTTTTTGCTTGCTTTGAGCGAGTTTGATTTCTTTAAGGATGTTGTTTTCAATATTATTAAGGTAGTTTGAGTCAAATTTCAAATCTTGGGGCGTTTTTGTAGAAACTAATTCAATATTTCCAACCTTTTTTAAATCGCTTGTTTTGAAACCATTAAAATCCAATGCGCCAAGCAACAATAAAACCCCTATGATCCTATATTTTTTAAAGGGTTTAGCACTCAAAAAAACGCAAGCCAAAAAAACAAGCCCTAGCGATAACTTATCCACTCTAAATACGCTATAAGAAAAAAAGCTATCTGGGACTAACCAATCAAATCCAAAAGGGTGGATAAAACTAGAGCCTAAAAAACTCAAAAGCCTGAAGTAGGGGTTTTCAAAATAGAGCAGCAAATAAAATAAAACCCCATAAACTAACGCTACTAAAACAATGATTAAGGGCAATAAATAAGTGAAATCCGAGTAGCGAAAACTTAAAGCGCACCAGTAAAACAATAACGCCCCCACGAAAAACCCCAAAGCAAAAGCGCTGTTTTTGGGGGTTTTTAAAAACGCTAGCATGCTTAAAGGGGCTAATAGGCTTGTGAGTGTGATAGAAATATAGGGGTTTTCAATTGCATAAGCGTCCAAAACAGCGTTCACATACACGCTTGAAACAAACATGCACGCTAATAAAAAAGCGTTTTGATTGAATAGAAGAAGACGCATGGCTAAATTGTGAAACCTTGAGATTGTTTTAGTGTATTATAGCTATATTTTAATTTAAGAATTTTAGATTGATTTTTTTAAGGGTAGTTTTTTTTAAGTTGTGTTATTATTTTCAAATTTCAAGTCTAAAGAGCGTGAATTGGCATGATTTAAGAGTAATGGGTGTTTTTGAGCGCTCACTATCTTTATGCGAGATATATGAGAGAAAGGTTTGGGTTTAGGGTTTGAATTATATTGATTTGGCGTTACTTGTGGTGGTGGTAGCCTTTGGGATTAGAGGGTTTTATCATGGCTTCGTGAGTGAAGTGGCGGGGACTTTAGGGATTGTGCTTGGCGTGTATTTAGCGTCTCGCTATTCTGTGGCTGTTGGGAATTTATTTTCAGAGCATTTGTATGATCTAAGAAATGAAACCATGACGAATCTCATCGGTTTTTTATTGGTGTTAGCGTCTATTTGGGTGTTTTTTTTAGCTTTTGGAGTGTTGCTAGGCAAGGTGTTAGTCTTTAGCGGGTTAGGCATTATAGACAAAGCGTTAGGGTTTATTTTTTCATGCTTGAAGACTTTTTTAGTGCTTTCTTTCATCCTTTATGCGCTCTCTAAAATGGAAGTGATGAAAGACGCTAACGCCTACTTGCAAGAAAAGAGTGCTATTTTCCCCACCATGAAAAGCATCGCCAGTAAGATCATGCGCCTTGATGGCGTCAAACATGTGGAGAAAAACCTTAAAGACAACCTTGAAGAAATGAGCGATGAAGTTAAAAATAAAGAATCTATTGATAACGCCAAAGAATCTTTTAATAAAGCGATGGATAAGGGCATGGAATCTTTAAAAGAAAAGGCTAAAGATTTGCCTAAAAACATGCTAGATCCAAAAGCTAACCAAACCCCACCAAACCCCACCCCATCTAATAAAGAACCCCTATAAAGGCATCACATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAATAGCTTGAGAGAAGAAGGGAAAAACCCTTATCAAAATGGCTTGAAACGAAGCCTCACTAATGCTGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACAAAGAAAAATGCGAAAGTATTGTAGGGAGAGTCAAGCTTTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAGTTGAAGATGAAAGTGCGATTTTGCAAGCTTATGTTTCGCAAAATGAATTGAACGATGAGTTTAAAAGCTTGAAAAAGCATTTAGAAGTGGGCGATATTGTGTTGGTGGAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTAAGCATTCATGCCCTAGAATTTCATATTTTAAGCAAAACCATTGTGCCTTTACCTGAAAAGTTTCATGGATTGAGCGATATAGAATTGCGTTACCGCCAGCGCTACTTGGATTTGATCGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAGCGCAGTTTGATTGTCTCTAGCGTGCGGAAATTCTTTGAAATGGAAGGGTTTTTGGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGAGCGAACGCAAGGCCTTTTATCACTTATCATAACGCTTTAGAGGTGGAGAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTAGGGGGGTTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGGAATGAGGGCATGGATCACAGCCATAACCCCGAATTTACGATGATTGAATTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGACTATTTGACTACTTGCTAAAGACTTTAAATTTGGATTCAAAAATCATCTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCTTTAGAAACAATAGGGGGCATTAGTAAGGATATTTTGGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCGAGGTGTTAAAGTAGAGCCCAATCTCACTCATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCATAAGCTCATTAACCCCACTTTTGTAACCCAATACCCTATTGAGATTAGCCCCTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGGTTTGAATTGTTCATTGCAGGAAAAGAAATCGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAACTAGAGCGCTTTAAAAATCAAGTGGCTGAGAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTATGTGTGGGCCCTAGCCCATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACAGGTTAGTGATGTTACTCACTGGAGCTAAAAGCATTAAAGATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATATTGAGAGTGGAGAATAA

Protein sequences of DBSCAN-SWA_1

>NC_014560|181560:191548|190042_191548_+|WP_000492579.1|tRNA|DBSCAN-SWA
MFSNQYIQQRIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKVEDESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVEGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRYLDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIVGGFEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDALETIGGISKDILEKEDRLLAYLLERGVKVEPNLTHGKLLAEAFDHFVEHKLINPTFVTQYPIEISPLARRNDSNPNIADRFELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIKDVILFPAMRPVKNDFNIESGE
>NC_014560|181560:191548|182791_183562_+|WP_000753488.1|DBSCAN-SWA
MKKTNINILIACEESQRVCNEFRKLGLNAYSCDLLECSGGHPEWHFNCDVFEVIENKGGVLQNGKHAKVSQWDMMIAHPPCTFLAVSGAKWYYHPKDKDLPIEQKRPHPKFPNRTKDREEASKFFMDLVEAKIPYIAIENPIGIMNTRYKKPNQIVQPYHFGDSASKKTCLWLKNLPPLKYTNIVDPGEFIEFKSGKKIAKWYSDGLTKTRSAKERQIWRSKTFPGFAKAMAEQWGEFVKNEMFKKVKNESLFEES
>NC_014560|181560:191548|184875_186090_+|WP_000933367.1|DBSCAN-SWA
MLNLKERCFTDNKLNDNFVGIRSINNDLQICFPLGFDISDDKNIRTDIKKLISVLLEYNKAIACENFLNNKNEIIRSSFPLTAYKNVIEYFLSHGYYTENKSYYENSAKGKINFSKTMKKNKPIIQNFNNKNSFIYTRFQVKKEMINENELITAINKYCVHEAFSKFGFVFSSFMPPKFKLPADKNYCIYLLENRLNNTFNNDKKILFQSMKNILLQDDNTLDKTDFKFGTYHFYVVWERMIDRAFGIKNKEVYFPKTKWKLRRSNQNPDYLLQPDSIMLFGDKIYILDAKYYKYGISGVASDLPSSASIIKQIVYGEYAAKRETKKEIYNVFLMPFNRFNNPLKLSNIFENIGFANGEWRDNLKPYEKIQGILIDTKFLMQNYNKKSNDLLKLLAKNVEETKI
>NC_014560|181560:191548|189331_190033_+|WP_001106339.1|DBSCAN-SWA
MNYIDLALLVVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEVMKDANAYLQEKSAIFPTMKSIASKIMRLDGVKHVEKNLKDNLEEMSDEVKNKESIDNAKESFNKAMDKGMESLKEKAKDLPKNMLDPKANQTPPNPTPSNKEPL
>NC_014560|181560:191548|187832_189107_-|WP_001237963.1|DBSCAN-SWA
MRLLLFNQNAFLLACMFVSSVYVNAVLDAYAIENPYISITLTSLLAPLSMLAFLKTPKNSAFALGFFVGALLFYWCALSFRYSDFTYLLPLIIVLVALVYGVLFYLLLYFENPYFRLLSFLGSSFIHPFGFDWLVPDSFFSYSVFRVDKLSLGLVFLACVFLSAKPFKKYRIIGVLLLLGALDFNGFKTSDLKKVGNIELVSTKTPQDLKFDSNYLNNIENNILKEIKLAQSKQKTLIVFPETAYPIALENSPFKAKLEDLSDDIAILIGTLRTQGYNLYNSSFLFSKEGVQIADKVILAPFGETMPLPKFLQKPLEKLFFGESAYLYRNASSFSDFTLDDFTFRPLICYEGTSKAAYSNSPSKIFIVMSNNAWFSPSIEPTLQRTLLKYYARRYDKIILHSANFSTSYILSPSLLGDILFRKR
>NC_014560|181560:191548|187191_187833_-|WP_000588228.1|DBSCAN-SWA
MIKAINISHAFEKPLYNGVNLHIKPKESLAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQVASILAKQEINHSLLEQLGIAHTLKQGVGELSGGQQQRLSIARVLSKKPKIIIADEPTGNLDTISANQVISMLQNYITEKEGALVLATHDEHLAFTCSQVYRLEKEVLIKEK
>NC_014560|181560:191548|181560_182805_+|WP_001046408.1|DBSCAN-SWA
MNKYSCIDLFSGAGGLSLGFANTNRFNILAHIEWEKPMITTLRNDLIKRFKISEYEARKRVIKFDIQKTDELINGSWSDETLKIYGSDNDESVSQFGLNGIISGKKIDVIFGGPPCQAYSLAGRAQDKHSMKYDYRNYLFESFVKIVDYYQPQCFVFENVPGMLSAKPGDQFVKDRIYEAFLKIGYEIKKPDEMKEIIYSSDDYEVPQTRKRVIIFGVRKDNKEWLFKFYQNLDNLKSKKPPLTVRDAIDHLPKFRPLKTPLKTSNKNISHELIGANNLTQNFPRYNNLRDLKAMEFWIENNMNNAPTKEKLDFYTKITGKVSNHNKYRNLEWDKPSPTLVAHLQKDGFMFIHPEANQSRSITIREAAILQTFPNDFEFIGSQAACFKMIGNAVPVNFAKNIALAVAKVLDEKN
>NC_014560|181560:191548|186159_187188_-|WP_000941840.1|DBSCAN-SWA
MLQRPKIVAELSANHNQDLNLAKESLHAIKESGADFVKLQTYTPSCMTLNSKEDPFIIQGTLWDKENLYELYQKASTPLEWHAELFELARKLDLGIFSSPFSSKALELLESLNCPMYKIASFEIVDLDLIEKAARTQKPIILSSGIATHAELQDAISLCRGVNNFDITLLKCVSAYPSKIEDAHLLSMVKLGETFGVKFGLSDHTIGSLCPILATTLGASMIEKHFILNKSLQTPDSAFSMDFNGFKSMVEAIKQSVLALGEEEPRINPKTLEERRFFARSLFVIKDIQKGEALTSDNIKALRPNLGLHPKFYKEILGQKASKFLKANTPLSADGIERSLQV
>NC_014560|181560:191548|183536_184883_+|WP_000870342.1|DBSCAN-SWA
MKVYLRKVDKQCINKQISITKGVLEHFFDNANNQDEVDMKGILSDYNDKVSILLATDPRLGGGIKRIISAEEDKIKENRLDYELKVDDVLLFTCISPKEYTLEIILPTDTRYNVLNSLISNSKHLLVLSENKTRSLSDNKIDESVRIDGGKNIILYGVPGSGKSYTLQRDYCNDNSVVEKIVFHPDYSYSDFVGQIMPSVDDSGIVSYKFNPGPFTNILKKAYHNPQTKHVLVIDEINRGNAPTIFGEIFQLLDRLKHDKDGFKKGSSEYAINNMDIANIVHSDKNASIRIPSNLWIIATMNTSDQNVFTLDTAFQRRFSMQLIENSFDNVDDDFKNMKILDTEITWKEFCTTINEKIAQNNEGLSSMEDKRFGVYFVNVDDLKSKENFAHKVIKYLWDDVFKFDRNIIFDTTKFNTLEAVVKNFTKEKGRTQFDIFSDDVKELLSNA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001046408.1|181560_182805_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	9.3e-30	29.2
WP_000753488.1|182791_183562_+	hypothetical protein	S0A2X1	Cellulophaga_phage	4.0e-55	48.1
WP_000870342.1|183536_184883_+	McrB family protein	M1NSM1	Streptococcus_phage	1.2e-83	40.8
WP_000933367.1|184875_186090_+	LlaJI family restriction endonuclease	Q6DMW8	Streptococcus_phage	9.3e-67	35.9
WP_000941840.1|186159_187188_-	pseudaminic acid synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	5.9e-30	33.7
WP_000588228.1|187191_187833_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-16	28.7
WP_001237963.1|187832_189107_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_001106339.1|189331_190033_+	CvpA family protein	NA	NA	NA	NA
WP_000492579.1|190042_191548_+|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.4e-93	41.5