CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014555	Helicobacter pylori PeCan4, complete genome	5 crisprs	cas14j,cas2,DEDDh	1	2	0	0
NC_014556	Helicobacter pylori PeCan4 plasmid pHPPC4, complete sequence	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_014555

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CRISPR-Cas detection and classification

Crispr_ID: NC_014555_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014555_1

336156-336265

Orphan

Consensus_repeat	Method
AGGCTCTCTAGCGTTACTGAAGAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014555_1

>merge|NC_014555|1|336156-336265|CRISPRCasFinder
AGGCTCTCTAGCGTTACTGAAGAAATTATCGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAACCCCAGAGAATACGCATGAGAGGCTCTCTAGCGTTACTGAAGAAAT

>NC_014555|1|1|336156-336265|CRISPRCasFinder
AGGCTCTCTAGCGTTACTGAAGAAAT	TATCGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAACCCCAGAGAATACGCATGAG
AGGCTCTCTAGCGTTACTGAAGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014555.1\|WP_000599162.1\|334024_334429_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_014555.1\|WP_148214518.1\|337022_337094_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000742591.1\|328722_329265_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NC_014555.1\|WP_001019031.1\|332179_332986_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NC_014555.1\|WP_001117137.1\|339324_340206_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_014555.1\|WP_079994979.1\|333215_334028_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NC_014555.1\|WP_000699919.1\|335434_335773_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_041199514.1\|337410_338196_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000829850.1\|343636_344299_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
NC_014555.1\|WP_000426633.1\|338185_339280_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227365
NC_014555.1\|WP_001207749.1\|331163_332156_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NC_014555.1\|WP_000833935.1\|329197_330136_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NC_014555.1\|WP_000810713.1\|340205_341756_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NC_014555.1\|WP_000373236.1\|341764_343381_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_014555.1\|WP_000201852.1\|346064_347096_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|272961
NC_014555.1\|WP_000840151.1\|334560_335241_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NC_014555.1\|WP_000056232.1\|347082_347862_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235850
NC_014555.1\|WP_001168212.1\|330132_330915_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NC_014555.1\|WP_000364698.1\|344342_346046_+\|flagellar-basal-body-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NC_014555.1\|WP_000051431.1\|332982_333216_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120

Protein	Function_ID	Function_description	E-value
NC_014555.1\|WP_000599162.1\|334024_334429_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.31353e-36
NC_014555.1\|WP_000742591.1\|328722_329265_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	1.08495e-58
NC_014555.1\|WP_001019031.1\|332179_332986_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	9.64188e-151
NC_014555.1\|WP_001117137.1\|339324_340206_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	5.11893e-67
NC_014555.1\|WP_079994979.1\|333215_334028_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	7.98421e-97
NC_014555.1\|WP_000201852.1\|346064_347096_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|272961	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family. [Cellular processes, Chemotaxis and motility].	6.69256e-165
NC_014555.1\|WP_000829850.1\|343636_344299_+\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	7.34371e-15
NC_014555.1\|WP_000426633.1\|338185_339280_+\|hypothetical-protein	gnl\|CDD\|227365	COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion].	0.0005797
NC_014555.1\|WP_001207749.1\|331163_332156_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	2.8543e-179
NC_014555.1\|WP_000833935.1\|329197_330136_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	7.82409e-90
NC_014555.1\|WP_000810713.1\|340205_341756_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_014555.1\|WP_000373236.1\|341764_343381_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_014555.1\|WP_000840151.1\|334560_335241_+\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	3.25165e-42
NC_014555.1\|WP_000056232.1\|347082_347862_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235850	PRK06669, fliH, flagellar assembly protein H; Validated.	1.13222e-64
NC_014555.1\|WP_001168212.1\|330132_330915_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	3.02438e-124
NC_014555.1\|WP_000364698.1\|344342_346046_+\|flagellar-basal-body-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0
NC_014555.1\|WP_000051431.1\|332982_333216_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	2.43443e-25

>NC_014555.1|WP_000699919.1|335434_335773_+|hypothetical-protein
MKIMHQVMDFLDSCKQTIQKNSNEALQKTKRVLFKEKSQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIHAKESEENQEKSAKHFKEVWEKGDNEQER
>NC_014555.1|WP_000840151.1|334560_335241_+|sel1-repeat-family-protein
MAEPNPEELFDLGIESYEKQDFSKARKYFEKACDLNYGGGCGALGELYYNGEGVEKNLIKAAYFYIKSCDLNIGKGCSRLGKLYYDGKGVEKDLIKAAYLYAKACDLKDGGGCSDLGVLYQNGQIVEKDLTIAAQLYPKACDLKYGLGCSNLGALYYNGKGVEKDLIKAAQFYSKACELKEGYGCGALGVLYKYGQGVEKDLIKAAQFYSKACKLGNQKACEALKK
>NC_014555.1|WP_000599162.1|334024_334429_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGEIVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACGILERYCQQVLKKR
>NC_014555.1|WP_079994979.1|333215_334028_+|DNA-protecting-protein-DprA
MNQRMKSNFQYSALENIPKAFDTLKDPPKKLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NC_014555.1|WP_000051431.1|332982_333216_+|cell-division-topological-specificity-factor-MinE
MSLFDFFKTKGSATTATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK
>NC_014555.1|WP_001019031.1|332179_332986_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALIADKKTKNLSFLAASQSKDKNVLDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKRGEEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFGALKGIFS
>NC_014555.1|WP_001207749.1|331163_332156_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKVRIGLYQGSLSVSKAKAEGFEVLEVKELVQQSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQESSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLVADLLHYKGVEGLRKHISNTAEFGAIKAREPMGNLLEKRMQKILKKIQNGAFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRVPFNHKK
>NC_014555.1|WP_001168212.1|330132_330915_-|NAD+-synthase
MQKDYQKLIAYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSLVSMPESKTDALNLCETFSIPYTEYSIAPYDAIFDSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELACHLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQNKPIDSETLTQLGYDEILVKNIISRIQKNAFKLELPTIAKRFNPK
>NC_014555.1|WP_000833935.1|329197_330136_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKIPPYYPFCLPSGLYRESIKSYKEAHLVITEDKDYKRITSISHPTKRMLLVTAIANPSRLDAFLPKEVVKKWYFRDHAPFDLKLLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLDLKLEICPKILEQIDRYIFSYPCNTKEHL
>NC_014555.1|WP_000742591.1|328722_329265_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYCYKNIQAIDFVHLSDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNRGETILKALEYIAFEEFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFVSKEKEFIDVLLYYKDKKRYNDRSVLKF
>NC_014555.1|WP_148214518.1|337022_337094_+|hypothetical-protein
MLKSFKKAFFRALCLGVLGLLGG
>NC_014555.1|WP_041199514.1|337410_338196_+|hypothetical-protein
MFRCFKTILGTSVIALVLLGLWRWTYDKSCSSLLFVLLILGIVAYSYISLKMHQRRCFAKCYVNKKSCLSKMLHSPIIVSCFYFIFSIFTSVSIACSVLDYNWMMWGIVFCTIVVCAVVFGVFEKMLKNIIKEDYLMLMSREASSLVGALFFFVLSCYVIYTNNIPGYLKPALIDTIKAASDSIYSSCDYTDYFLKAKKMSEGFAWWGMFKAESMGMNKGFMVAGWVVFIIYNALSGIAISRLSAQIIYWLSKYFRGECGK
>NC_014555.1|WP_000426633.1|338185_339280_+|hypothetical-protein
MENDVKEDLEQARPKQELEKQKQELEKLTQEKEQEIKKKEKRKYINIFLGIIIVLFISYIILSSITYNEPSQAIKTAHTKTILEILPNPISDLIKNNLDSHQQEISDLLSSSKDKMYSKVDAQIDNLFDPIENNVDKFLDWHYSLKGNYSELALFAAKTIGSSAEDALFNKLQEKLLGADYKQRLKTMTDNISDAFISLLHQHKKDTEKIATQGVAGIPQVAESLKNIDDRTERDLKLKMGFAAAIGATAGVGAGKLMERLAPKLIKKLGTKLGAKFLAKFGIAVGGVLPTLGADVAFNYIDEWLHRDDFKKEILNNINEAKKNLKESYKTGFDNSITKFSEKIQKGLKNIETISVQAHMKKLK
>NC_014555.1|WP_001117137.1|339324_340206_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFFVRDVLKCSLKEAQRHLDKQRLKQNQQAVRKSQMIQGVVSLIHFKPNEKTQALVFETKDFGVFDKPPQVYTHPKGYFYHESLLDCIQSHFGKNAHPAHRLDYETSGLVLAGKTLQSAKDLKALFMQKKVKKTYLALAHGLVDKNIVIDKPILTPQNIQKDLRIRSKISPLGKPSTTLVKPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVGHRIVGEGLYGVIDENAREYLQLKRENNAPLLMLHASSLEFEFKGAIHEITSQMPQRFMPFLKD
>NC_014555.1|WP_000810713.1|340205_341756_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERMTSITYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSAIMAKFFESLNYKHVRVAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARFCKEKNYTLIITDHHCLHHDKIPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLKKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVFEEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSPNIDLIDALNGVSSLLLGYGGHRQACGLSVRKNNIVSLFETLENFDFKVLPFCEKEPPLTLTLKDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVKEAIYFNAERFLKAGEKVSAIFSVELDECSNEPKMFVKSLL
>NC_014555.1|WP_000373236.1|341764_343381_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDVQVNIEWLDSENFNEKTDLEGVDAILVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIEDFMDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPNIKERHRHRYEINPKYRQEWEDKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSALSKS
>NC_014555.1|WP_000829850.1|343636_344299_+|hypothetical-protein
MAENSFKNVSTHPKAFFLLPVKTLFLLGGVFSAFFILIAGLVFFDYANSMDNAIFSLMRSNSSNPILDQALQRVVFLGSSQFVLPLSLLVGVFLSLYRKNLALGVWFVLSVILFEALLESLKHLLAHSIQWLSHSANFPSAIALSLTLFYGLLVLLIPHLITHQIFQNILSYSLLGLILLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NC_014555.1|WP_000364698.1|344342_346046_+|flagellar-basal-body-M-ring-protein-FliF
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQIPYKVSKDDTILIPRDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAKG
>NC_014555.1|WP_000201852.1|346064_347096_+|flagellar-motor-switch-protein-FliG
MATKLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQTGEEEDVIE
>NC_014555.1|WP_000056232.1|347082_347862_+|flagellar-assembly-protein-FliH
MSLNSRKNLIQKDHLNKHDIQKYEFKSMANLPPKTNPNGASLETPNHPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKALIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKIKLESNEAISKGGVMITSSNGSLDGNLMERFKTLKESVLENFKV

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Crispr_ID: NC_014555_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014555_2

537331-537481

Orphan

Consensus_repeat	Method
TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014555_2

>merge|NC_014555|2|537331-537481|CRISPRCasFinder
TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGCGATCAGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCTTTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC

>NC_014555|2|2|537331-537481|CRISPRCasFinder
TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC	GATCAGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCT
TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014555.1\|WP_001149352.1\|541978_542662_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|129290
NC_014555.1\|WP_000237452.1\|544538_544976_-\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000434905.1\|542674_543649_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235505
NC_014555.1\|WP_000715278.1\|540874_541078_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NC_014555.1\|WP_001004698.1\|539288_540605_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NC_014555.1\|WP_001252844.1\|546399_547638_-\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|236265
NC_014555.1\|WP_001029386.1\|545438_546377_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|273113
NC_014555.1\|WP_000873308.1\|526151_527291_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI	unknown	unknown	unknown
NC_014555.1\|WP_000428886.1\|533796_534024_-\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_079994990.1\|527301_528414_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH	unknown	unknown	unknown
NC_014555.1\|WP_000855898.1\|528430_528859_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG	unknown	unknown	unknown
NC_014555.1\|WP_000855320.1\|525441_526155_-\|cag-pathogenicity-island-type-IV-secretion-system-associated-adhesin-CagL	unknown	unknown	unknown
NC_014555.1\|WP_000609472.1\|532681_533305_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl\|CDD\|293175
NC_014555.1\|WP_000792853.1\|543645_544467_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000690332.1\|538482_539250_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|272885
NC_014555.1\|WP_000495981.1\|529721_532673_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl\|CDD\|273346
NC_014555.1\|WP_000835492.1\|524449_525361_+\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN	unknown	unknown	unknown
NC_014555.1\|WP_000965285.1\|541102_541966_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NC_014555.1\|WP_000668152.1\|533306_533654_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagC	unknown	unknown	gnl\|CDD\|374896
NC_014555.1\|WP_000812649.1\|528913_529720_-\|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_014555.1\|WP_001149352.1\|541978_542662_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	9.66179e-89
NC_014555.1\|WP_001252844.1\|546399_547638_-\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|236265	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed.	0
NC_014555.1\|WP_000609472.1\|532681_533305_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl\|CDD\|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	4.23455e-123
NC_014555.1\|WP_000715278.1\|540874_541078_+\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.40477e-32
NC_014555.1\|WP_000690332.1\|538482_539250_-\|glutamate-racemase	gnl\|CDD\|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	6.1726e-125
NC_014555.1\|WP_001004698.1\|539288_540605_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NC_014555.1\|WP_000495981.1\|529721_532673_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NC_014555.1\|WP_001029386.1\|545438_546377_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|273113	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_014555.1\|WP_000965285.1\|541102_541966_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.07589e-115
NC_014555.1\|WP_000668152.1\|533306_533654_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagC	gnl\|CDD\|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	1.10206e-34
NC_014555.1\|WP_000434905.1\|542674_543649_+\|hypothetical-protein	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0.00898386

>NC_014555.1|WP_000428886.1|533796_534024_-|hypothetical-protein
MENKSIGQIFKDSFKKSFFSGLWSCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYNDLRKKNGWDK
>NC_014555.1|WP_000668152.1|533306_533654_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagC
MKFFTRITDSYKKVVVTLGLVMTTNPLMAVTSPATGVTETKTLVIQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIFLSTKFGFNIDEGGGAS
>NC_014555.1|WP_000609472.1|532681_533305_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRGFFLKVLLSLVVFSSYGSANDDNQAKKEALEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL
>NC_014555.1|WP_000495981.1|529721_532673_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLIIEQEVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSIFILFVTVVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTIKKKIVIDETNRDYGLAFSNDFMRAYNEKQKRESFYDISFFLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYIKDGVVYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAYNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIEEY
>NC_014555.1|WP_000812649.1|528913_529720_-|type-IV-secretion-system-chaperone-CagF
MKQNLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINEGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIRQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIIPNWIQTDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQNKNSD
>NC_014555.1|WP_000855898.1|528430_528859_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAVLNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYSDSSFLPPILGY
>NC_014555.1|WP_079994990.1|527301_528414_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSAILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAKYQALAANALTSGTNPMTTPACPIGDKVLVVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK
>NC_014555.1|WP_000873308.1|526151_527291_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI
MKYFLSIFSFLTFLFLNGGEAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSNAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAQYIAYNTIGIKAFEETLKGFETWLKTAMQKATLIDYNSLTGQALFQSAIYAPALSFFSSMGAPFGIIETFTLAPTKCPYLDGLKISACLMEQVIQNYRMIVALIQNKLSDADFQNIAYLNGINGEIKTLKGSVDLNALIEVAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIASSKVIVK
>NC_014555.1|WP_000855320.1|525441_526155_-|cag-pathogenicity-island-type-IV-secretion-system-associated-adhesin-CagL
MKTLVKNTLFSFLLLSVLMAEDITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEIGQEDALNIKKAAMALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQSSKIIVK
>NC_014555.1|WP_000835492.1|524449_525361_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKLYQRHDDKEVTEEEKKFATNALREKLRNDRARAEQIQKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPATPLVPNEWRTPEIETIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASCAICEKRKKEMEQENNYQDTTNTSEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK
>NC_014555.1|WP_000690332.1|538482_539250_-|glutamate-racemase
MKIGVFDSGVGGFSVLKSLLKAQLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHQIKLLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIKQQVANKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEENILEGELLETCMRYYFTPLEILPEVVILGCTHFPLIAQKIESYFMEHFALSTPPLLIHSGDAIVGYLQQKYTLKKNACAFPKVEFHASGDVIWLEKQAKEWLAL
>NC_014555.1|WP_001004698.1|539288_540605_-|transcription-termination-factor-Rho
MNENAPTHKSPHKVKTHTPVSGYRIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNEK
>NC_014555.1|WP_000715278.1|540874_541078_+|50S-ribosomal-protein-L31
MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK
>NC_014555.1|WP_000965285.1|541102_541966_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFLPTPIGNLADITLRALEVLERCEVFLCEDTRVSKRLLHLLAQNPIISHSFPNIATKKREFIAFHSHNDQEFLNQIELSFFDKEIAVMSDAGMPSLSDPGMSLVAHALKHNIPYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLKIAKILNALAYLEEKTPVVFYESPHRLLETLKDLNDLAKGMHLFAAKELTKLHQQYYLGEISQIIERLQQNNIQGEWVLVLLNEKKIEPCMGLSALLELDLPPKIKAKIEAAMTQKNAKELYFQRLLEEKNQ
>NC_014555.1|WP_001149352.1|541978_542662_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MQAVIYGKQVITHLLNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIKVDNKKAQSLAKGGNHQGVLARVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKELAYEGIVRSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILMDKIN
>NC_014555.1|WP_000434905.1|542674_543649_+|hypothetical-protein
MEQHKKSLENLDLSDVQSISKDISGAALEELSLKNLDKNLQILKEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKVCVFKEGASEEQNQETDPKETAKKPLKVELDYSINQANTSLSKKSSKWKPFVLILGVVVIVLAVVIVQNSSSLKEEREQENAIKSGTKKNSFNKANLAEENKPETTPKPEEKQEKQTEQDKQEKEAIKETLDTINIVPKKDVWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLSLKNNNQEQNYNDNKTRRFLYEPAKGLTLINEAQYKALQR
>NC_014555.1|WP_000792853.1|543645_544467_+|hypothetical-protein
MKNLFLAFIVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYAMGRLDSLKLLNTLKENGLLSFNFDKPSMLRITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKRHGFDFTDIRRVSLKEWEYDFVLQKIKLPNARVLILSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIALNLLDGVRFVHITDAKNPIVLKNGISVVFDAMP
>NC_014555.1|WP_000237452.1|544538_544976_-|hypothetical-protein
MVIYEKIKSRFSRNWSLRDRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFLISFSGEFVADMAFGKKSKILKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVFFIEAGADLLVGCVIQKIFFGKYWVDRYY
>NC_014555.1|WP_001029386.1|545438_546377_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MAIYLDFENHIKEIQNEIELALIRGDEDAKEILEKRLDKEVKSIYSNLTDFQKLQLARHPDRPYAMDYIDLILKDKYEVFGDRHYNDDKAIVCFIGKIDNVPVVVIGEEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEYSIFSVISPEGCAAILWDDPSKTEVAIKAMKITPRDLKEAGLIDDIILEPSKGAHRDKFSAANTIKEYFLDALRTIQQDPHFLDNRYQKLMSLGSFVESMN
>NC_014555.1|WP_001252844.1|546399_547638_-|beta-ketoacyl-ACP-synthase-II
MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEVMNPKDVKKAGRFIQLALKATKEAMKDSGILDAHNKCPEELANRMGVSSGSGIGGLGNIEANSIFCFEKGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIEAVKTILLNGADRMLVVGAESTICPVGIGGFASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKKRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAKVEVGYVNAHGTSTHYNDWYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISIMAMNQGILPPTINQETPDPECDLDYIPNVAREKQVDAVMSNSFGFGGTNGVVIFKKA

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Crispr_ID: NC_014555_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014555_3

729299-729438

Orphan

Consensus_repeat	Method
TCTTTAGTGTCGTTTTCTTTAAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_014555_3

>merge|NC_014555|3|729299-729438|CRISPRCasFinder
TCTTTTGGTTGGGTTTCTTGAACTTCTTTAGTGTCGTTTTCTTTAATCTCTTTTTCTTTAGTTTCTTTTTTAATCGTCTCTTTAGTGTCGTTTTCTTTAGTTTCTTTTTCAACCGCCTCTTTAGTGTCGTTTTCTTTCAT

>NC_014555|3|3|729299-729438|CRISPRCasFinder
TCTTTTGGTTGGGTTTCTTGAAC	TTCTTTAGTGTCGTTT
TCTTTAATCTCTTTTTCTTTAGT	TTCTTTTTTAATCGTC
TCTTTAGTGTCGTTTTCTTTAGT	TTCTTTTTCAACCGCC
TCTTTAGTGTCGTTTTCTTTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014555.1\|WP_000346099.1\|740827_741814_-\|tRNA-dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|223120
NC_014555.1\|WP_000749326.1\|725340_726210_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_001201267.1\|728803_729205_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|129254
NC_014555.1\|WP_000462226.1\|723386_724553_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NC_014555.1\|WP_000126873.1\|741905_742922_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|366502
NC_014555.1\|WP_041199521.1\|735234_736287_-\|type-II-asparaginase	unknown	unknown	gnl\|CDD\|273115
NC_014555.1\|WP_000709598.1\|732398_732857_+\|sialic-acid-binding-protein	unknown	unknown	gnl\|CDD\|368949
NC_014555.1\|WP_000498380.1\|731048_731681_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|130023
NC_014555.1\|WP_001210642.1\|718997_720680_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NC_014555.1\|WP_013356171.1\|726390_726555_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000353224.1\|728068_728791_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224060
NC_014555.1\|WP_000577958.1\|720693_720987_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NC_014555.1\|WP_079995031.1\|733292_735095_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_001232189.1\|731947_732370_+\|DUF1104-domain-containing-protein	unknown	unknown	gnl\|CDD\|368949
NC_014555.1\|WP_000532510.1\|739940_740858_-\|outer-membrane-beta-barrel-protein	unknown	unknown	unknown
NC_014555.1\|WP_000279776.1\|726821_728066_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NC_014555.1\|WP_000434369.1\|724614_725295_+\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|129461
NC_014555.1\|WP_000227209.1\|736361_737693_+\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|273263
NC_014555.1\|WP_001272675.1\|737769_739653_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_000943300.1\|720983_722303_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|237094

Protein	Function_ID	Function_description	E-value
NC_014555.1\|WP_000346099.1\|740827_741814_-\|tRNA-dihydrouridine-synthase	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	1.47723e-97
NC_014555.1\|WP_000749326.1\|725340_726210_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.00551e-35
NC_014555.1\|WP_001201267.1\|728803_729205_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|129254	TIGR00150, Hypothetical_UPF0079_protein_yjeE., tRNA threonylcarbamoyl adenosine modification protein YjeE. This protein family belongs to a four-gene system responsible for the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have (weak) ATPase activity. [Protein synthesis, tRNA and rRNA base modification].	2.92453e-48
NC_014555.1\|WP_000462226.1\|723386_724553_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	1.39342e-85
NC_014555.1\|WP_000126873.1\|741905_742922_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|366502	pfam01171, ATP_bind_3, PP-loop family. This family of proteins belongs to the PP-loop superfamily.	3.82698e-64
NC_014555.1\|WP_000498380.1\|731048_731681_-\|amino-acid-transporter	gnl\|CDD\|130023	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498., L-lysine exporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.38248e-64
NC_014555.1\|WP_000709598.1\|732398_732857_+\|sialic-acid-binding-protein	gnl\|CDD\|368949	pfam06518, DUF1104, Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found largely in Helicobacter pylori.	2.29072e-19
NC_014555.1\|WP_000434369.1\|724614_725295_+\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|129461	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC. Members of this protein family are QueC, involved in synthesizing pre-Q0 from GTP en route to tRNA modification with queuosine. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti, the gene was designated exsB, possibly because of polar effects on exsA expression in a shared polycistronic mRNA. In Arthrobacter viscosus, the homologous gene was designated ALU1 and was associated with an aluminum tolerance phenotype. [Unknown function, General].	9.99351e-109
NC_014555.1\|WP_001210642.1\|718997_720680_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	4.70179e-50
NC_014555.1\|WP_000353224.1\|728068_728791_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224060	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only].	4.4726e-147
NC_014555.1\|WP_000577958.1\|720693_720987_-\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	3.43752e-07
NC_014555.1\|WP_079995031.1\|733292_735095_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.84382e-65
NC_014555.1\|WP_001232189.1\|731947_732370_+\|DUF1104-domain-containing-protein	gnl\|CDD\|368949	pfam06518, DUF1104, Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found largely in Helicobacter pylori.	4.095e-23
NC_014555.1\|WP_000279776.1\|726821_728066_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	8.15529e-141
NC_014555.1\|WP_041199521.1\|735234_736287_-\|type-II-asparaginase	gnl\|CDD\|273115	TIGR00520, L-asparaginase_2, L-asparaginase, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric. [Energy metabolism, Amino acids and amines].	0
NC_014555.1\|WP_000227209.1\|736361_737693_+\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|273263	TIGR00770, Anaerobic_C4-dicarboxylate_transporter_DcuA, anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NC_014555.1\|WP_001272675.1\|737769_739653_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.40422e-63
NC_014555.1\|WP_000943300.1\|720983_722303_-\|glutamate--tRNA-ligase	gnl\|CDD\|237094	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional.	0

>NC_014555.1|WP_001201267.1|728803_729205_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MRAHLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVFHYDFYMRDLEACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEIKTELTSRFYTIKIV
>NC_014555.1|WP_000353224.1|728068_728791_-|LPS-export-ABC-transporter-ATP-binding-protein
MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVDLAKYPLHKRSNLGIGYLPQESSIFKELSVEDNLALAGESTFKNSKESEEKMESLLDAFNIQAIRERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENALVRKYYLGENFKV
>NC_014555.1|WP_000279776.1|726821_728066_-|RNA-polymerase-factor-sigma-54
MAVLRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIETKRIKNFSDRFSAKNSSDHLENFAIASKSLFETLEAQIIPPLFPTETSQRIAMDIINGLDSEGYFEENIEERARILGVESEVYEKVRQRFSCLNPAGIGARDVKESFLFQLEGRELDNNELYEEARKIILNLEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFILEVDNEILVRLNDESYPTISLEENRFKDSAYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKELRPLKLLDLANEFNHSVSTISRAISNKYLACQRGVFPIKHFFSTALDNSETSNAVIKDYLLELIKNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKKLYLMRA
>NC_014555.1|WP_013356171.1|726390_726555_+|hypothetical-protein
MHQNNKTFLPNQSAHLSKTILFLNAGFLAYLLSACGDNDDLDYDFSRISDYRFH
>NC_014555.1|WP_000749326.1|725340_726210_-|outer-membrane-protein
MKKSLLLSLSLSFWLHAERNGFYLGLNYLEGSYIKEQGSIGERILAEYALNQAIKNANNYPFLKQLAKDVEEAQNAFNKVKDSNKIALQFKGNGGTGGILNELSFGYKYFLGKKRMIGFRHSLFFGYQASKLAYVPFVSLIAVSPLSLLTFSSISYSNIGSIAFLPYGFNTDLLINLIDNKKYSLGLVIGMDIGAITWFSSNNIYPFSSINLNPFNQVKSCTIFQLQGKFGIRWNSDEYKSSVELGVKVPAFKVNYYSDNYGDKLDYKRVVSVYLNYAYNFAYNFKNKH
>NC_014555.1|WP_000434369.1|724614_725295_+|7-cyano-7-deazaguanine-synthase-QueC
MEQEICAISFSGGQDSTTLAVWAKKRFKKVYLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDFLENITHSALFKNSNDLMGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKIGASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKETHTCYQGERKILHAYGYGCGECPACQLRKKGYEEFESNKK
>NC_014555.1|WP_000462226.1|723386_724553_-|CCA-tRNA-nucleotidyltransferase
MFELDKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKHDFRVLETGIKHGTITALKNNQSYEITTFRIEKGHIKHRKPKELVFSSRLTDDLKRRDFSMNAIAYSPTKGLIDPFKGQNAIENQMIECVGEARLRFFEDALRVLRALRFSATLGFKIASSTKKAIFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVTQEKIENLGFLKSAPFNLELRLLGFFKRQKSLENLRYPKKTCVLFLKAKECHKAFLNIHNKTELKFLLKNYDLEPFNLALDFYALKNPKRALKIKSLLQEIFNANEPFKKEHLALKGGTLQNLGYRRQQIGEILNACLNLVIAHPENNSLECLVEWVRDRGY
>NC_014555.1|WP_000943300.1|720983_722303_-|glutamate--tRNA-ligase
MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQHKPFLIRIEDTDKERNIEGKDQEILEILRLMGISWDKLVYQSHNIDYHREMAEKLLKENKAFYCYASTEFLEREKEKAKNEKRPFRYLDEWATLEKDKNHAPVVRLKAPNHAVSFNDTIKKEVKFEPDELDSFVLLRKDKSPTYNFACACDDLLYEISLIIRGEDHVSNTPKQILIQQALGSNDPIVYAHLPIILDEVSGKKMSKRDEASSVKWLLNQGFLPVTIVNYLITIGNKVPKEVFSLDEAIEWFSLENLSNSPAHFNLKYLKHLNHEHLKLLDDETLLECAHIKDKNLLGLLRLFIEECGTLLELKEKISLFLEPKDIVKTYENEDFKERCLALFNALKSMDFQAYKDFESFKKEAMRLSQLKGKDFFKPLRILLTGNSHGIELPLIFPYIQSHHQEVLRLKA
>NC_014555.1|WP_000577958.1|720693_720987_-|YggT-family-protein
MIFSTLINAVAVILSSLITIYMWVVIIYVLISFVQPNPNNPIMQILARLCEPVFYFLRSRFKLVFNGLDFAPLVVVIVLKFLDLTLIQWLFMLAKNL
>NC_014555.1|WP_001210642.1|718997_720680_-|lytic-transglycosylase-domain-containing-protein
MRFFTLFFIGALGVGFSQTEFNLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNNALQKAMQEKGSDNPEKSPDVKLPEDIYCKQTALESMLEETDTFQASCIAIALKSKIRDFDKIPFQTLKPLQIKIKEAYPVLYEELEILQSKNVSASLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALTKTNATHSNAQTFFILGINEILRKKPSKALKYFERSESVVKDDDFSKDRAIFWQYLVSKKKKTLERLSQSPALNLYSLYASRKLQTTPSYRIISHIQNLSQEDPPFNTYDPFSWQIFKEKTLSLKDEGAFNAMLKSLYYEKSAPELTYLLSQRNKDKIYYYLSPYEGIIEWQNVDEKAMAYAIARQESFLLPAVISRSFALGLMQIMPFNVGPFAKSLGMDNVDLNDMFNPNIALKFGNYYLNHLKKEFNHPLFVAYAYNAGPGFLRRWLESSKRFKEKNHFEPWLSMELMPYSETRLYGFRVMLNYLIYQEIFGNFIPVDAFLEQTLNSKDKP
>NC_014555.1|WP_000498380.1|731048_731681_-|amino-acid-transporter
MFVVFIEGFGLAISLCAAVGAQSLFIVERGMARNYVFLICALCFMCDIVLMSMGVFGVGAYFAKNLYLSLFLNLFGAVFTGFYAFLALKTLFQTFKKKQVQTPKKLSLKKTLLFTLGVTLLNPQVYLEMVFLIGASALSFDLVQKFVFLAGTLSAALSWLLLLCALSLRYGSKLLNNQKIFIGVNLFVTAIMGTLSVTLFRDFLALLSKT
>NC_014555.1|WP_001232189.1|731947_732370_+|DUF1104-domain-containing-protein
MRKSLAFCLSALLGLQVLGARDFSSLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALKAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
>NC_014555.1|WP_000709598.1|732398_732857_+|sialic-acid-binding-protein
MKKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGIVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDSMTVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH
>NC_014555.1|WP_079995031.1|733292_735095_+|outer-membrane-protein
MVKNTGELKNLNDKYEQLNQYLNQLASLKQSIQTANNIQAVNNALSDLKSFASNNHTNKETSPIYNTTQAVITSVLAFWSLYAGNALSFFVNNLSDSSNAPLGRIHQDGNCTGLQQCFMKRETYDKMKGLAENLQKAQGNLCALSECSSDQSNGNKTSMTTALETAQKLMDLIEQTKVSMVWKNIIIAGVSNRAGGVGAITSTGPVTDYAVFNNIKAMLPILQQALKLTQDNHTLSNQLQAQAMGSQKNREFAKDIYAFAQNQKQILSNASNIFNLFNSIPKDQLKYLENAYLKVPHLGKTPTSPYRQNVNLNKEINAVQNNVSYYGNRLDAALSVAKDVYNLKSNQTEIVTTYNDAKTLSEEISKLPYNKVNVTNIVMSPKDPTSDQYQINPEQQSNLNQALAAMSNNPFKNVGMISSQSNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNTSNFQFLFNLGLRMNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVFAY
>NC_014555.1|WP_041199521.1|735234_736287_-|type-II-asparaginase
MRIFLKLLILLLCLKGQVMAQNLPTIALLATGGTIAGSGVDASLGSYKSGELGIKELLKAIPSLNRLARIQGEQISNIGSQDMTEEVWFKLAKRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLRSTKPVVLVGAMRNASSLSADGALNLYNALSVATNEKSTNKGVLVVMDDNIFSAREAIKTHTTHTSTFKALNSGAIGSVYYGKARYYMQPLRKHTIESEFSLLELKTPLPKVDIIYTHAGMTPDLFQASLKSHAKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVGSGEVTSGEIDDKAYGFITSDNLNPQKARVLLQLALTKTNDKAKIQEMFEEY
>NC_014555.1|WP_000227209.1|736361_737693_+|anaerobic-C4-dicarboxylate-transporter
MVDAFFQIIVLLFSLFLGARLGGLGVGYAGGLGVLILCLFLGLNPGKIPFDVILIIMAVISAISAMQKAGGLDYLVQIAEKILRKHPKQINYLAPSVAYFLTILAGTGHTVFSLIPVIVEVSQSQNIKPKAPLSLAVVSSQVAITASPVSAAVVFMSGILEPLGANYLTLLMVWIPTTFLACMLTAFIVGFTDLKLDSDPHYLERLKAGKISPPKIKEEKETSKSAKLSLWIFIGGVVAIVFYASAISKNIAFVSPVVLGRDQAIVSFMLSVATLIVIFCKINANEIAHSSVFKSGMQACVCVLGVAWLGDTFVSNHIDEIKRYASFLITDYPFLLAVALFLASMLLYSQAATSKALIPSVITALGISANHTEHLYIIVASFASVSALFVLPTYPTLLGAIAMDNTGTTKMGRYVFDHAFLIPGVLVVSLSVALGFVVAPLVL
>NC_014555.1|WP_001272675.1|737769_739653_-|outer-membrane-protein
MSAGYQIGEAVQMVKNTGELKNLNDKYEQLSQYLNQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITSVLGFWSLYAGNYFTFFVGNKDTKQPANVQGNPPFKTIVSNCSGIENCAMDQTTYNKMKKLAESLQAAQQNATTKGNNLCALSGCAATDSASNQPNSTVSSALETAQKLMDLIANTRTAMMWKNIVISGVSNASGAINSTGYPTQYAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGTQTNPNFAKDIYTFAQNQKQVISYAQDIFNLFNSIPKEQYKYLEKAYLKIPNAGQTPTNPYRQVVNLNQEVQTIQNNVSYYGNRVDSALSVARDVYNLKSNQANIVTAYSNANNLSQEISKLPYNQVNTKDIITLPYDQNAPAAGQYNYQINPEQQSNLNQALAAMSNNPFKNVGMISSQSNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNPYSAKVNTSNFQFLFNLGLRMNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQYRRLYSVYLNYVFAY
>NC_014555.1|WP_000532510.1|739940_740858_-|outer-membrane-beta-barrel-protein
MGRIESKKRLKALVFLASLGVLWGNAAEKTPFFKTKNHIYLGFRLGTGASTRTSMWQQAYKDNPTCPSSVCYGEKLEAYYKGGKNLSYTGQIGDEIAIDKYHILGLRVWGDVEYAKAQLGQKVGGNTLLSQANYNPSAIKTYDIASNAQSPLVLQKTPNPQNFLFNNGHFMAFGLNVNVFVNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSSQYKNQNTHQDDKFFAAGGGFFVNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWRNFGSSNVWQQQTIRQNFSVFRNREVFVSYAFLF
>NC_014555.1|WP_000346099.1|740827_741814_-|tRNA-dihydrouridine-synthase
MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSLLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVKLLKIIRENTNKKITSVKVRLGFDQKIPKEIAHALNDAPVDYVVVHGRTRSDKYQKEKIDYESIALMKGILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRAALRAPWIFWQIRNNTTKLPAVVKKDLVLEHFDKMVEFYGDRGVVMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMREGIEEFFNQEMLQSEVPLWVELNQKSV
>NC_014555.1|WP_000126873.1|741905_742922_-|tRNA-lysidine(34)-synthetase-TilS
MTARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVGENIAFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIHYAPKIACNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAKDLKFFEDSSNSSLKFKRNFFRKHYANALMQHYSKGIIQSFKFLDQEKERLYPLIPVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKRHFFSLEIAQKFIIESDKECVFIAFKPPKTLSMPKDFKDRARRLNIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL

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Crispr_ID: NC_014555_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014555_4

937691-937828

Orphan

I-B

Consensus_repeat	Method
TTCAATCAAGGGACTTATAACTTTAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_014555_4

>merge|NC_014555|4|937691-937828|CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAGTTTCAATCAAGGGACTTATAACTTTAATGACAGCGTAAGCTTTAATAATAACACCTTCAATCAAGGGACTTACAACTTTAAT

>NC_014555|4|4|937691-937828|CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAAT	AGCGCCCAATCCACTTTTGAAAACAGCAGT
TTCAATCAAGGGACTTATAACTTTAAT	GACAGCGTAAGCTTTAATAATAACACC
TTCAATCAAGGGACTTACAACTTTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_014555.1\|WP_000041798.1\|950497_951157_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000426954.1\|948231_948774_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NC_014555.1\|WP_000592727.1\|923081_924635_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_001064286.1\|948789_949701_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_014555.1\|WP_079995005.1\|947250_948231_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NC_014555.1\|WP_001248525.1\|926811_928356_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NC_014555.1\|WP_001099598.1\|945588_946170_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NC_014555.1\|WP_001115881.1\|945236_945443_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NC_014555.1\|WP_079995034.1\|919376_920525_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NC_014555.1\|WP_041199522.1\|944080_945184_+\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_001240288.1\|935001_935694_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_014555.1\|WP_079995004.1\|928593_930282_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NC_014555.1\|WP_000688622.1\|935839_936835_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_014555.1\|WP_001229979.1\|931208_931640_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376519
NC_014555.1\|WP_000812494.1\|924656_926246_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_000236816.1\|951160_951763_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NC_014555.1\|WP_001052439.1\|946166_947312_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NC_014555.1\|WP_000894549.1\|920518_922549_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_014555.1\|WP_000821750.1\|949697_950501_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_014555.1\|WP_001126597.1\|931644_934902_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393

Protein	Function_ID	Function_description	E-value
NC_014555.1\|WP_000426954.1\|948231_948774_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.3129e-104
NC_014555.1\|WP_000592727.1\|923081_924635_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	8.79448e-54
NC_014555.1\|WP_001064286.1\|948789_949701_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.07469e-75
NC_014555.1\|WP_079995005.1\|947250_948231_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NC_014555.1\|WP_001248525.1\|926811_928356_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	8.72029e-177
NC_014555.1\|WP_001099598.1\|945588_946170_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.16127e-98
NC_014555.1\|WP_001115881.1\|945236_945443_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.46126e-26
NC_014555.1\|WP_079995034.1\|919376_920525_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	9.94987e-52
NC_014555.1\|WP_041199522.1\|944080_945184_+\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.68977e-46
NC_014555.1\|WP_001240288.1\|935001_935694_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.5771e-52
NC_014555.1\|WP_079995004.1\|928593_930282_-\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	6.37861e-24
NC_014555.1\|WP_000688622.1\|935839_936835_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	2.58394e-158
NC_014555.1\|WP_001229979.1\|931208_931640_-\|hypothetical-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	0.000116177
NC_014555.1\|WP_000812494.1\|924656_926246_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.86318e-53
NC_014555.1\|WP_000236816.1\|951160_951763_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	3.58272e-21
NC_014555.1\|WP_001052439.1\|946166_947312_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	5.97956e-137
NC_014555.1\|WP_000894549.1\|920518_922549_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.32765e-136
NC_014555.1\|WP_000821750.1\|949697_950501_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	6.26423e-126
NC_014555.1\|WP_001126597.1\|931644_934902_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0

>NC_014555.1|WP_000688622.1|935839_936835_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERSDNPHLEVIGINDPANWEILAYLLEHDSAHGLLNKEARYSNGKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFIGEYDEKQYPTLVYGVNHSLYQNQAIVSNASCTTNAIAPICAILDKAFGIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAFKDPINGLLIEASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSHRLVDMAQFVYHY
>NC_014555.1|WP_001240288.1|935001_935694_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSRNAYAEDSVLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIVAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NC_014555.1|WP_001126597.1|931644_934902_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVVLINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYNELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPALDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEEGINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIAPHFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIGNKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAVHDNTLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVESLKVLKISEGRPNVMDLMMNGEISMAINTSDHKSQDDAKLIRTSVLKNHVSYFTTLSAIEVLILALEESSQQDELLALQDYLK
>NC_014555.1|WP_001229979.1|931208_931640_-|hypothetical-protein
MALVYLAQSDTTIGLLSKDSEKLNALKNRPKNQSVLIESADFTTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASKLADVVVSDERGLFESSSSKIFRLYKDKKVRVR
>NC_014555.1|WP_079995004.1|928593_930282_-|TonB-dependent-receptor
MAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFRPNDIAAIIPFTPNPKLGEENECVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSKYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYAIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFYVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NC_014555.1|WP_001248525.1|926811_928356_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLYPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKNDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLKYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRISHANKNALGQLGRANEYSLQFNTSYAFTESILLNFRITYYGARINKGYQVGYFGAPKFNNPDGDFNANYQDRSYMMTNLTLKF
>NC_014555.1|WP_000812494.1|924656_926246_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLANLVDLYPTLNTSSIQQCGATNSGSGGGATAAATTSNSPCFQGNLSLYNEMVSSIKTLSQDLKNNIFQGNNNTTSANLSNQLSNLNTASVYLAYMNSFLNANNQAGGIFQNNTNQVYGNGVTAQQIAYVLKQASITMGPSGNSGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVDTSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVSALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NC_014555.1|WP_000592727.1|923081_924635_+|Hop-family-adhesin-AlpA
MIKKSRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADTTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPEKLNGNDVSANALLGGAVGSGTCAAAGTAGSSSLNAQSACTAAGYYWLPSLSDRVLSTIGSQTNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALETKNGASGASGATGQNGQTYSQNAIKYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSAFNNATGGQLTNQANAVQGRANQLSNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRSTNILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NC_014555.1|WP_000894549.1|920518_922549_+|ATP-dependent-helicase
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKSPEHAPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICTLIFNPKDIMAAIHVLSHISDIGSNTAKDIHEALMLLGNGDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKLDSK
>NC_014555.1|WP_079995034.1|919376_920525_+|class-I-SAM-dependent-methyltransferase
MNKWDIKTLGQVFTPKKIVDFMLTLKHNHGSVLEPSAGDGSFLKRFKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPKGELVFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGDFSRITNDGLQFLCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNETYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNEANWFEWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLNLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLNEDKTC
>NC_014555.1|WP_041199522.1|944080_945184_+|Hop-family-outer-membrane-protein-HopJ/HopK
MXXXLFSLSLPFSLFLSFGIAEENGAYASVGFEYSISHAIQHNNPFLNQERIQTISNAQNKIYKLNQVKNEITSMPKTFAYINNNLKNNSQLTPTEMQAEKYYLQSSFENIEKIVMLSGGATSNPQLVQALEKIQEPTTNPLEFEENLKNLEVQFAQSQNRMLSSLSSQIAQISNSLNALDPSSYSKNISSMYGVALNVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNSQKHSSVGFYVGFALAGSSWVGSGLSMWVSETDFINNYLINYQAKMHTSFFQIPLNFGVRVNMDKHNGFEMGLKIPLAINSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NC_014555.1|WP_001115881.1|945236_945443_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NC_014555.1|WP_001099598.1|945588_946170_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NC_014555.1|WP_001052439.1|946166_947312_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFYFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKIEQVLEQIVQFGMPNYFGSQRFGKFNDNHKEGLKILQNKTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLNINPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAAPTGLLDGKKALYAKNLSLEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NC_014555.1|WP_079995005.1|947250_948231_+|zinc-metalloprotease-HtpX
MRARCLKKSSMRKEKIMTNFEKIIAQNRIKTNAVLATYCVIFAFIGLLVDVIRINANDLGTALFKLMTFQIFPTITMVMFLVAFAIIIVCIQNFSSIMLSGDEYKLIDKSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIIKAPYMNAFASGWNESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLVLQIILPFLTLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYANNDYKGAIQNSTRSAAYLFSTEMFSTHPSIKNRIQSLSRRVI
>NC_014555.1|WP_000426954.1|948231_948774_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSRRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLKGLFKKNPKTRAEFMQLLKS
>NC_014555.1|WP_001064286.1|948789_949701_+|polyprenyl-synthetase-family-protein
MNNPNLSFYHNECERFESFLNHHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNSLLESHIIVELVKILSANGGIKGMVLGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKDEGLFKWLQDFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDGVKNSFVNLLGLEEASGYAQTLKTEVLDDLNLLKPAYPLLQENLNALLNTLFKGKT
>NC_014555.1|WP_000821750.1|949697_950501_+|5'/3'-nucleotidase-SurE
MKRILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSHRNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHVSITPLNLDLTSYDDLKNLESWHKGMLK
>NC_014555.1|WP_000041798.1|950497_951157_+|hypothetical-protein
MSKNHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NC_014555.1|WP_000236816.1|951160_951763_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDSANMALDFGLMQQEMQVFIESFDHAHHFWDKESDEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHNHCVSFSQGIQKLWHDKDFFNKIISDEKQCFFHAKPLHQIP

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Crispr_ID: NC_014555_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014555_5

1093503-1093587

Orphan

Consensus_repeat	Method
CATGCGAGAAGTAGTGGTTCAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014555_5

>merge|NC_014555|5|1093503-1093587|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAATATTTCAAGGGAGCTTTCTTTGATCTCTGCATGGGCATGCGAGAAGTAGTGGTTCAAGAA

>NC_014555|5|5|1093503-1093587|CRISPRCasFinder
CATGCGAGAAGTAGTGGTTCAAGAA	TATTTCAAGGGAGCTTTCTTTGATCTCTGCATGGG
CATGCGAGAAGTAGTGGTTCAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014555.1\|WP_000238164.1\|1099292_1100237_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NC_014555.1\|WP_000656173.1\|1097654_1098047_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|236596
NC_014555.1\|WP_001124066.1\|1087261_1089088_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|130264
NC_014555.1\|WP_000542184.1\|1090441_1091125_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NC_014555.1\|WP_013356205.1\|1096128_1096791_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_013356206.1\|1102589_1104566_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_014555.1\|WP_000486466.1\|1097078_1097639_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NC_014555.1\|WP_000940189.1\|1084734_1085487_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_014555.1\|WP_000883593.1\|1089153_1090431_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223441
NC_014555.1\|WP_001265977.1\|1092283_1093330_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_014555.1\|WP_154017368.1\|1104682_1105648_-\|DUF3519-domain-containing-protein	unknown	unknown	gnl\|CDD\|152468
NC_014555.1\|WP_001186092.1\|1081612_1082647_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|273487
NC_014555.1\|WP_001126865.1\|1091111_1092122_+\|glucokinase	unknown	unknown	gnl\|CDD\|129832
NC_014555.1\|WP_000901414.1\|1085674_1086547_-\|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl\|CDD\|223861
NC_014555.1\|WP_001152791.1\|1086616_1087243_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|273490
NC_014555.1\|WP_000816840.1\|1101731_1102565_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_014555.1\|WP_000893889.1\|1100346_1101669_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NC_014555.1\|WP_000714247.1\|1083178_1084714_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_000576596.1\|1094814_1096122_+\|hypothetical-protein	unknown	unknown	unknown
NC_014555.1\|WP_001129845.1\|1098056_1099280_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999

Protein	Function_ID	Function_description	E-value
NC_014555.1\|WP_000238164.1\|1099292_1100237_+\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	1.54823e-135
NC_014555.1\|WP_000656173.1\|1097654_1098047_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	2.23665e-83
NC_014555.1\|WP_001124066.1\|1087261_1089088_-\|phosphogluconate-dehydratase	gnl\|CDD\|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NC_014555.1\|WP_000542184.1\|1090441_1091125_+\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	2.96045e-93
NC_014555.1\|WP_013356205.1\|1096128_1096791_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	6.97464e-35
NC_014555.1\|WP_013356206.1\|1102589_1104566_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_014555.1\|WP_000486466.1\|1097078_1097639_+\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	3.48516e-128
NC_014555.1\|WP_000940189.1\|1084734_1085487_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.13618e-144
NC_014555.1\|WP_000883593.1\|1089153_1090431_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0
NC_014555.1\|WP_001265977.1\|1092283_1093330_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	3.84584e-162
NC_014555.1\|WP_154017368.1\|1104682_1105648_-\|DUF3519-domain-containing-protein	gnl\|CDD\|152468	pfam12033, DUF3519, Protein of unknown function (DUF3519). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 117 to 1154 amino acids in length. This protein has a single completely conserved residue Q that may be functionally important.	5.32323e-11
NC_014555.1\|WP_001186092.1\|1081612_1082647_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|273487	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE. Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described by a separate model. [Energy metabolism, Sugars].	0
NC_014555.1\|WP_001126865.1\|1091111_1092122_+\|glucokinase	gnl\|CDD\|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NC_014555.1\|WP_000901414.1\|1085674_1086547_-\|Sel1-like-repeat-protein-HcpC	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.4138e-46
NC_014555.1\|WP_001152791.1\|1086616_1087243_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	4.2878e-111
NC_014555.1\|WP_000816840.1\|1101731_1102565_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.56129e-35
NC_014555.1\|WP_000893889.1\|1100346_1101669_+\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NC_014555.1\|WP_001129845.1\|1098056_1099280_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0

>NC_014555.1|WP_001265977.1|1092283_1093330_+|NAD(P)-dependent-alcohol-dehydrogenase
MRVQSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKTCKPCKEHQEQFCANTVFTYDCLDYFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMEVKHFYTDPKQCKEELDFVISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPTLSVFDFIHLGNRKVYGSLIGGIKETQEMMDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NC_014555.1|WP_001126865.1|1091111_1092122_+|glucokinase
MPKTETYPRLLADIGGTNARFGLEVAPRQIECIEVLPCKDFESLSDAVRFYLSKCKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLDLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKSELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVLKKTPGLDGAGIALENYLLHDKI
>NC_014555.1|WP_000542184.1|1090441_1091125_+|6-phosphogluconolactonase
MGYQLFEFENLENCHKALTKRFKEFFNTALKKHHQVSIAFSGGRSPIGLLQKLSVLDLKWHACLISLVDERIIDTNHDDSNTKLLRDYLLQNNALKASFIPLLPEKISNDTNALFNFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLVKPANAPYERLSMSINALENCEKLFLSISGAQKRGVLENALKENAPYSLPIARILHSQKVTTEVFYAKN
>NC_014555.1|WP_000883593.1|1089153_1090431_+|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSNEEFLVLLCEKTQLHSREKGREFLAHISYFCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFATTAQHLAKNALNHANARLILEKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKIKVLKTLQPPKDFKKQVIRAQYQGYRDENKVHKESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPRNQASAKIHFNAINTLEFFLSQDKITLTLQDHQNPLILETHHKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYESHNLNESEFLKPLYQ
>NC_014555.1|WP_001124066.1|1087261_1089088_-|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDWIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGEVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLAFVIKELLKEGLLFEDVHTIMDTKTQKGMQNYTKTPFLENGQLVHKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDLIELDAPNNALNVLEKDFDNRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIRA
>NC_014555.1|WP_001152791.1|1086616_1087243_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIVPVVVIEDIKDAVPLAQSLVEGGIQIIEVTLRSSCALEAIELIAKNVPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIKLLEHAKKKGMPLIPGVSSSSEIMQALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMHSYLNLENVLCVGGSWLTPKNLIQNKKWDKITEICKRSLALR
>NC_014555.1|WP_000901414.1|1085674_1086547_-|Sel1-like-repeat-protein-HcpC
MLGNVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLDYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGAPKDLKKALASYDKACGLKDSPGCFNAGNMYHHGDGVAKNFKEALDRYSKACEMQNGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDLLKQLKIKV
>NC_014555.1|WP_000940189.1|1084734_1085487_+|SDR-family-oxidoreductase
MAHILVSGATSGFGLEIAKAFLQKNHVVFGTGRRKENLQKLQLAYPKHFIPLCFDLKNKLETKRAVETIFSMTDHIDALINNAGLALGLNKAYECELDDWEIMIDTNIKGLLYLTRLILPSMIEHNQGTIINLGSIAGTYAYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVEPGLCGETEFSMVRFKGDKIKAQSVYENTIYLKPQDIANIVLWIYEQPLHVNINRIEIMPISQTFAPLPTHKNP
>NC_014555.1|WP_000714247.1|1083178_1084714_+|hypothetical-protein
MKKFLYTILALLLIGLLTTYLILFTEWGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQANDDSILILKGDFSLLKQSVDLNYHIDIKNLRSFKEWIPYPLRGSVITSGNIKGHRKALLIQGISNIAQSHTAYNALLDDFKLSHLSLNAKDANLEDLLYLFNRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNALMNQIFHLNLKDALVFNLSHSSDFKENKAISDTTLTSPLANFTALKSEYLFSALKLNAPYTLEIPNLAKLQNITNHPLKGSLTLKGTIEQSPKLLKVSGHSNLLDGALDFTLLNKDLKGRFSNISTLKALDLFNYPKFFQSIADANLDYDLSAKQGVLKARLKNARFLKNSFSDFLYSISKFDITKEIYNDANLVSQINQQRLLSNLSLKSPKTQLKIHNGLLDLNTKQMDMLMDAEILKFIFKMKLQGNMHQPKFSLILNEKAIQQNLQQGLKEILKNDTLKKGLDHLLKDDKLKEKLEKGLKGLF
>NC_014555.1|WP_001186092.1|1081612_1082647_-|UDP-glucose-4-epimerase-GalE
MALLFTGACGYIGSHTARAFLEKTKENIIIVDDLSTGFLEHIKALERYYPNRVTFIQANLNETHKLDAFLNKQQLKDPIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCLKHAIKRFIFSSTAVVYGESSSSLNEESPLKPINPYGASKMMSERILLDTSKIADFKCVILRYFNVAGACMHNDYTTPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGTCIRDYIHVDDLANAHLASYQTLLEKNKSEIYNVGYNQGHSVKEVIEKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTPFKPLYNNLDTIIKSALDWEEHLLRFQ
>NC_014555.1|WP_000576596.1|1094814_1096122_+|hypothetical-protein
MIFLKKSLYALLISGFLTPPLIKAASFVYDLKFMSFNFNLVAPNNNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGDNYPYGGNSYLKPGDITPQWPNGYPYFSQKNNPQGGEIGKYSNPIILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWVSVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTIDTRELIDFVKSKTSK
>NC_014555.1|WP_013356205.1|1096128_1096791_-|outer-membrane-protein
MDKTMVKILMGMALLSSLQAAEAELDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGIIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPFIPNKRTEIVDGLSATTLWHRLPVAYFNCIYNF
>NC_014555.1|WP_000486466.1|1097078_1097639_+|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NC_014555.1|WP_000656173.1|1097654_1098047_+|4Fe-4S-dicluster-domain-containing-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPASALTQWPQKQEKKKS
>NC_014555.1|WP_001129845.1|1098056_1099280_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MAKSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIVHLCEIFKEINEDALKGTLTHPTQQFVGLRGPKMSFF
>NC_014555.1|WP_000238164.1|1099292_1100237_+|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPSGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFDSNKTIELADMAVDSLMFPLFEVFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
>NC_014555.1|WP_000893889.1|1100346_1101669_+|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICSKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSAGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEILQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFG
>NC_014555.1|WP_000816840.1|1101731_1102565_+|outer-membrane-protein
MKRALWLILGLFYALNAESFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQHNSSNLNLSQRFNKSQIIFSDGLSPVFKNSYVSNGLGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGSQESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLGVAFAGVYDRLSDALLYQALLQNTFGGKVDPNGFQFLVDLGVRLGNEHNQFGFGIKIPTYYFNHYYSMNNISNNSENVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NC_014555.1|WP_013356206.1|1102589_1104566_-|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRVYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNIAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
>NC_014555.1|WP_154017368.1|1104682_1105648_-|DUF3519-domain-containing-protein
MKLPKALNEATAGAALKYHIKRALERSHSISEFSKNLELSARKSHFSNNTLKIIEELNNGVKQASEELKKKATKYEKALKELQKIDESKLSKEQQQVLKVFKGELGQAEIKGIDLNDLYTLEQGTRNTGAKKILIKHYGVENTGGLTNEELLNMGEVVKNGSVLLESFEKRNNGVRYAYEWDNNGVKLNLVVDDLDSGNKIFDFYSDRNFTDYKGVSLLSESTLNASKNTDKKIINEKPLTSQEDLLKTQENALKTQDLSPLELAKAEKLAKLESEKLESEKEFLTSHQIFLKEAKGNAITQININKTESLEAIWQLKRAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014555_3	3.3\|729400\|16\|NC_014555\|CRISPRCasFinder	729400-729415	16	NC_014555.1	409601-409616	1	0.938

1. spacer 3.3|729400|16|NC_014555|CRISPRCasFinder matches to position: 409601-409616, mismatch: 1, identity: 0.938

ttctttttcaaccgcc	CRISPR spacer
ttcttcttcaaccgcc	Protospacer
*****.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014555_4	4.2\|937775\|27\|NC_014555\|CRISPRCasFinder	937775-937801	27	MT741944	Acinetobacter phage vB_AbaP_APK81, complete genome	9819-9845	4	0.852
NC_014555_4	4.1\|937718\|30\|NC_014555\|CRISPRCasFinder	937718-937747	30	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23198	7	0.767
NC_014555_4	4.1\|937718\|30\|NC_014555\|CRISPRCasFinder	937718-937747	30	NC_004303	Streptococcus phage O1205, complete genome	23169-23198	7	0.767
NC_014555_4	4.1\|937718\|30\|NC_014555\|CRISPRCasFinder	937718-937747	30	MK448589	Streptococcus satellite phage Javan632, complete genome	4593-4622	7	0.767

1. spacer 4.2|937775|27|NC_014555|CRISPRCasFinder matches to MT741944 (Acinetobacter phage vB_AbaP_APK81, complete genome) position: , mismatch: 4, identity: 0.852

gacagcgtaagctttaataataacacc	CRISPR spacer
tacagtgtaagctttagtaataacaca	Protospacer
 ****.**********.*********

2. spacer 4.1|937718|30|NC_014555|CRISPRCasFinder matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcagt	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

3. spacer 4.1|937718|30|NC_014555|CRISPRCasFinder matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcagt	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

4. spacer 4.1|937718|30|NC_014555|CRISPRCasFinder matches to MK448589 (Streptococcus satellite phage Javan632, complete genome) position: , mismatch: 7, identity: 0.767

agcgc-ccaatccacttttgaaaacagcagt	CRISPR spacer
-ccgtaccaatcgccttttgaaaacagcaag	Protospacer
  **. ******  ***************.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage