CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_014562	Pantoea vagans C9-1, complete sequence	3 crisprs	cas3,DinG,RT,DEDDh,csa3	1	2	7
NC_014563	Pantoea vagans C9-1 plasmid pPag2, complete sequence	0 crisprs	NA	0	0	0
NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	0 crisprs	NA	0	0	0
NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	0 crisprs	csa3	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014562_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014562_1

604069-604169

Orphan

Consensus_repeat	Method
GCACCTCAGGGATGAGGTGCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014562_1

>merge|NC_014562|1|604069-604169|CRISPRCasFinder
GCACCTCAGGGATGAGGTGCGTACTAAAAACGCCGGGAGCGTTTTTGAACAACGCAACGCGTTGGCCCGGCAACGGGAGCACCTCAGGGATGAGGTGCGTA

>NC_014562|1|1|604069-604169|CRISPRCasFinder
GCACCTCAGGGATGAGGTGCGTA	CTAAAAACGCCGGGAGCGTTTTTGAACAACGCAACGCGTTGGCCCGGCAACGGGA
GCACCTCAGGGATGAGGTGCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014562.1\|WP_013357161.1\|592101_592824_+\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|185295
NC_014562.1\|WP_013357177.1\|611914_612391_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NC_014562.1\|WP_013357168.1\|601504_602653_-\|galactokinase	unknown	unknown	gnl\|CDD\|179937
NC_014562.1\|WP_013357169.1\|602649_603696_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
NC_014562.1\|WP_013357176.1\|610556_611558_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NC_014562.1\|WP_013357167.1\|600476_601511_-\|galactose-1-epimerase	unknown	unknown	gnl\|CDD\|182931
NC_014562.1\|WP_033731900.1\|606763_606919_+\|multidrug-efflux-pump-associated-protein,-AcrZ-family	unknown	unknown	gnl\|CDD\|371231
NC_014562.1\|WP_013357171.1\|605844_606627_-\|molybdenum-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
NC_014562.1\|WP_013357178.1\|612466_613771_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NC_014562.1\|WP_041456714.1\|607064_607838_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NC_014562.1\|WP_013357164.1\|596840_597422_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_014562.1\|WP_003851893.1\|599571_600324_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NC_014562.1\|WP_013357173.1\|607834_608524_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NC_014562.1\|WP_013357166.1\|598176_599229_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	unknown	unknown	gnl\|CDD\|236435
NC_014562.1\|WP_081463858.1\|597520_597886_-\|YbgS-like-family-protein	unknown	unknown	gnl\|CDD\|372863
NC_014562.1\|WP_041456709.1\|593784_596859_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NC_014562.1\|WP_041457188.1\|604302_605775_-\|molybdate-ABC-transporter-ATP-binding-protein-ModF	unknown	unknown	gnl\|CDD\|182852
NC_014562.1\|WP_013357174.1\|608523_609582_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NC_014562.1\|WP_013357162.1\|592817_593807_-\|CDF-family-zinc-transporter-ZitB	unknown	unknown	gnl\|CDD\|235130
NC_014562.1\|WP_013357175.1\|609582_610401_-\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523

Protein	Function_ID	Function_description	E-value
NC_014562.1\|WP_013357161.1\|592101_592824_+\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|185295	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional.	1.41071e-168
NC_014562.1\|WP_013357177.1\|611914_612391_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	2.23073e-110
NC_014562.1\|WP_013357168.1\|601504_602653_-\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
NC_014562.1\|WP_013357169.1\|602649_603696_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NC_014562.1\|WP_013357176.1\|610556_611558_+\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NC_014562.1\|WP_013357167.1\|600476_601511_-\|galactose-1-epimerase	gnl\|CDD\|182931	PRK11055, galM, galactose-1-epimerase; Provisional.	0
NC_014562.1\|WP_033731900.1\|606763_606919_+\|multidrug-efflux-pump-associated-protein,-AcrZ-family	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	6.89851e-17
NC_014562.1\|WP_013357171.1\|605844_606627_-\|molybdenum-dependent-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	3.12443e-157
NC_014562.1\|WP_013357178.1\|612466_613771_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NC_014562.1\|WP_041456714.1\|607064_607838_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	9.56449e-166
NC_014562.1\|WP_013357164.1\|596840_597422_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.9382e-53
NC_014562.1\|WP_003851893.1\|599571_600324_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
NC_014562.1\|WP_013357173.1\|607834_608524_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	3.30408e-141
NC_014562.1\|WP_013357166.1\|598176_599229_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NC_014562.1\|WP_081463858.1\|597520_597886_-\|YbgS-like-family-protein	gnl\|CDD\|372863	pfam13985, YbgS, YbgS-like protein. This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.	1.06732e-33
NC_014562.1\|WP_041456709.1\|593784_596859_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.57834e-55
NC_014562.1\|WP_041457188.1\|604302_605775_-\|molybdate-ABC-transporter-ATP-binding-protein-ModF	gnl\|CDD\|182852	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional.	0
NC_014562.1\|WP_013357174.1\|608523_609582_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NC_014562.1\|WP_013357162.1\|592817_593807_-\|CDF-family-zinc-transporter-ZitB	gnl\|CDD\|235130	PRK03557, PRK03557, CDF family zinc transporter ZitB.	0
NC_014562.1\|WP_013357175.1\|609582_610401_-\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0

>NC_014562.1|WP_013357169.1|602649_603696_-|galactose-1-phosphate-uridylyltransferase
MEKFNPVDHPHRRYNPLIDQWILVSPHRAKRPWQGAQETPAVNTLPSHDPDCFLCAGNTRITGDKNPDYAGTYVFTNDFAALMTDTPDAPESDDILMRCESARGTSRVICFSPDHSKTLPEMSLSALEEVVRTWQAQTADLGQHYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAQREDDHQRDYFAKHGSPMLVDYLAREQQDGSRTVVETEHWLAVVPWWAAWPFETLMLPKAHVKQLTDLSEAQSADLAKAIKLLTSRYDNLFQCSFPYSMGWHGAPFNGEANDHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRSVSDVHFREAQQ
>NC_014562.1|WP_013357168.1|601504_602653_-|galactokinase
MSLKTITQQLFSDTFGYAATHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVIACARRDDRQIRVVAADYENAQDIFSLDEEIVSVQEPMWANYVRGVVKHLQQRHADFGGIDMVISGNVPQGAGLSSSASLEVAVGTVVQQLYNLPLDGAAIAVNGQEAENQFVGCNCGIMDQLISALGQKDHAMLLDCRTLGTRPVSMPEDIAVVIINSNFRRSLVGSEYNTRREQCEAGARFFSKKALRDVELTEFEAAQAQLDPQVAKRVRHVLTENARTLEAADALTQGDLTRMGQLMAESHASMRDDFEITVPPIDTLVEIVKAQIGERGGVRMTGGGFGGCIVALMPLDLVDQVKAAVAEQYEAATGIKETFYVCKASEGAGQC
>NC_014562.1|WP_013357167.1|600476_601511_-|galactose-1-epimerase
MLNDVNSHAPDGQPWRITVLRNANGMLATFMDWGATWLSARIPMQDGTVREALLGCATPSDYLHQDAYLGATVGRYANRIAGAKLNKLNRQLVPNQGAHQLHGGPEGFDKRRWQIVSQSDSEVHYRIDSPDGDQGYPGNLIADLHYQLDDQNCLSIRYEARCDQPCPVNLTNHAYFNLDAHHGDARQHRLQLHADQYLPVDSEGIPNAPLKAVADTSFDFRNAKVVAQDFLTDDDQRAVKGYDHAFLLNSAGDDSQPAAELWSEDGRLQLSVTTSAPALQFYTGNYLAGTRAREQASYTAFQGIALESEFLPDSPNHAEWPQPDCWLQPGDRWESVTRYRFTPR
>NC_014562.1|WP_003851893.1|599571_600324_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MAVTKLVLVRHGESQWNNENRFTGWYDVDLSEKGRGEAKSAGQLLKKEGFVFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKTWRLNERHYGALQGLDKAETAAKYGDEQVKQWRRGFAVTPPELDRSDERFPGHDPRYAKLTPEQLPTTESLALTIDRVIPYWNDTILPRIKSGEKVIIAAHGNSLRALVKYLDNLSEDEILELNIPTGVPLVYEFDENFKPLKRYYLGDQDEIAAKAAAVANQGKAK
>NC_014562.1|WP_013357166.1|598176_599229_+|3-deoxy-7-phosphoheptulonate-synthase-AroG
MNYQNDDLRIKEIKELLPPVALLEKFPATDRAAQTVSHARQAIHQILQGKDDRLLVVIGPCSIHDTDAAKEYASRLLALRDELKGELEVVMRVYFEKPRTTVGWKGLINDPYMDNSYQLNDGLRLARKLLLEINDSGLPAAGEFLDMITPQYVADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGSPHCFLSVTKYGHSAIVETSGNGDCHIILRGGKEPNYSAQHVADVKAGLAKAGLPQQVMIDFSHANSSKQFQRQMVVADDVSQQLINGEQAIVGVMIESHLVEGNQSLESGEPLVYGKSVTDACIGWEDTDKVLRQLAAAVKQRRG
>NC_014562.1|WP_081463858.1|597520_597886_-|YbgS-like-family-protein
MKKFALIFLTAAMTLSSGAVLAADSSSNNGTANQAASAGAAAGGAKENLPPNNVDNSKINNTGTNTNPATSGSTTSNGNMSANEIDQNSQCKDGKCPNVNKKVQTKVGGGDVNTKTDGTSQ
>NC_014562.1|WP_013357164.1|596840_597422_-|response-regulator-transcription-factor
MAVLLLIDDHPLVEVALEAALSQSPIPVKLLSASSEKAARPLLEEQPDIIVLDIGLPDSDGLEFLRRLKIHRPDCPVLIYSAQQTRHYMRRAQALGAAGYVVKSQRMTQLLSAILAVLGGQTAFPEMDDEPELPLTQKERQILALLASGLSNLQIAAQLHISNKTVSTHKKNIMEKTGARSVVELADLWKAQQ
>NC_014562.1|WP_041456709.1|593784_596859_-|transporter-substrate-binding-domain-containing-protein
MESPAVRVILLMLLLLCCSALADVRPVSSVNLPMMLPVTHAETMQGRILRVGLLEENHAPWAMRIGNDLYGINADYLSALRQLTGAQFTLNLYSDQPHLMQALSSGQIDFALGMWSAPLPPGTLSSENWFSSPLRVYRNQQNQRAVMFNSQNASLAISDSTLAQLPSALAARHSWRRYSSDLQALYTLLNQQNDYVVADETSAGFLLNQLQQGQIYQIASHIEAGQLNLRAVARDPQLISWINQSLRQLPAELMNTLQARWSSSLPRYQDTQTLMLSPAERAWIADHPRITYTAEPDNYPWSYRDASGTARGYGVDLLKAIAQSTGLAFEPVWVSNPRQASTLIQQKQAMLQLMQPLNGDAMQSTSLPVWRALWGIYSVQSDTLAHWRDLRGKRIGVLQDDLALRLLPADLQPQLFADRNSLYDALAKGQIDALVDNVLSARWRIASRDDARIHLAFAASDIAWPIALGVTPDQPALRTLLDRALQQIPADTQSQMRDSWSTPPQPGSVMVMRSLPMVVLAVAGAAIVLLLLLLARRYWQQRRERQQREQAEHANAMKSQFLATVSHELRTPMQAILGLLELEKQQHSSQNLSLLHSSAQSLLTLLNDLQDHARIESNSFTLAPRPLALAQWLNQQQHFYHPLMRADGPRLIVEALTPLPDTVLIDADRLQQVVNNLMTNALKFTRHGAIRLTLAAEQQLVLTVSDSGSGIPPEEQQKLFDPWYQAPSGKSVSVQGSGLGLFICREMVLRMGGDIRLASESGHGTQVTVTLPLEICAPLSQADETFLPGFPQLRVAIVDDHPANLLVMQQQLVRFAIQADTFEQGRALLQADAKQPYDLLFIDQMMPRPDGTLLLRILRRRDRQRGRQAMRVLCSADAQLLSRPPEAGERVLIKPVQLADLSALLAEWQEDPLATLDDNLWQLAQQNDKFLSRLSQTLHSTVTQDLAVMREAHERADWTQFAEAAHRMKGSCLLAGLEHGAQLSQQLTEQVKQHQDTSETWQLLILFVNRLLKKLETYGTYPHS
>NC_014562.1|WP_013357162.1|592817_593807_-|CDF-family-zinc-transporter-ZitB
MAHTHTHSGQDSNRTRLAAAFGVTVVFMVAEVIGGWLSGSLALLADAGHMLTDAAALLMALLAVQFSRRKPNARHTFGLLRLTTLAAFVNAIALLGITALIVWEAVRRFADPQPVTGGLMLGIAVGGLLANILSFWLLHHGSGEKNLNVRAAALHVMGDLLGSVGAIVAAVIILLTGWTPIDPILSLLVSLLVLRSAWALLRESLQELLEGAPHSLDVNRLIRDLTLNIAEVRNVHHVHLWQVGEKPLLTLHAQVIPPYDHDALLHRIHDYLRQNYQIEHATVQMEYQPCAGAECELGLSSAAASGHDHSHSHDHDHDPAHAKGEAHTH
>NC_014562.1|WP_013357161.1|592101_592824_+|nicotinamide-riboside-transporter-PnuC
MDFFSTHNILVHIPLGAGGYDLSWIEAIGTLAGLLCIWFASLEKIINYPFGLINVTLFAVIFFQIQLYASLLLQLFFFAANIYGWYAWSRQTADHQAELKIRWLPLPKALAWAAGCVIAIALMTLYIDPVFALLTRAAVTLMNGIGLSVAMPALQPDAFPFWDSCMMVLSIAAMVLMTRKYVENWLLWVIINVISVMIFARQGVYAMSLEYVILTLIALNGSRMWIRSARQQGSRALSAQ
>NC_014562.1|WP_041457188.1|604302_605775_-|molybdate-ABC-transporter-ATP-binding-protein-ModF
MASLHILQGTFHLSDTRILRLNQVELQRGESWAFVGANGSGKSSLARALSGELPPLAGSVSSDFTRPVRLSLEQLQTLVAQEWQRNNTDMLSEGEEDTGLTVAEVIQAEVQQPERCKQLAQQFGIEPLLSRRFKYLSTGETRKTLLCQALMNQPDLLILDEPFDGLDVASRASLTDTLRNLQHPAFTLVLVLNRFDDIPDFVQQVGVLAECTLTHSGPRQTILTEALVAQLAHSEQLMGMALPEADVPDQLPSLADDAPRVILRNGTVSYNDKPVIQGLNWQVNAGEHWQIIGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKQHIGYVSSSLHLDYRVSTNVRTVILSGFFDSIGLYQAASDRQKALAQQWLTLLGMDNRLGDAPFHSLSWGQQRLVLIARALVKHPTLLILDEPLQGLDPINRQLVRRFVDVLIGEGRTQLLFVSHHAEDAPACITHRLSFIPHDGGYAFQQETLR
>NC_014562.1|WP_013357171.1|605844_606627_-|molybdenum-dependent-transcriptional-regulator
MEAELSLHIRLQQKLFADPRRIELLKRVQQTGSISQGAKLAGISYKSAWDAINEMNQMADETLVARATGGKGGGGATLTRYGERLIQLFHLMEQIQQKAFDALQQDTLPLDSLLAAIARFSLQTSARNQLFGTVVSNDAQQVVQHLLIQLADGVTQLNVALTQRSADRLQLAAGKEVLVLIKAPWIRISRDAAEEDNQLAATVTAIEPGEQMSEVLMQLASGETLCATLTNEQLQQLKLQPGDAVIASFNAENAIVATLL
>NC_014562.1|WP_033731900.1|606763_606919_+|multidrug-efflux-pump-associated-protein,-AcrZ-family
MLELLKSLAVAVLMVPVVMALMLGMIYGLGEVFNIFSKVGHREKSSARSHN
>NC_014562.1|WP_041456714.1|607064_607838_+|molybdate-ABC-transporter-substrate-binding-protein
MSFNYTRWGVAALVTVSLAGQAVAADNITVFAAASLTNAMQDIASQYQKEKGVTVVSSFASSSTLARQLEQGAPADLFISADQQWMDDAVAKKSVITRTRYTLLGNDLVLIAPRSAAAKAVTLDPQTDWKTLLHGERLAVGDPDHVPAGIYAKEALQKLGAWDGVAPALAPANNVRAALALVERNETPYGIVYGSDAVASDKVQVVGRFPADSHKPVEYPMAIVNDHDTATVKAFYDYLKGPQAAAIFKHYGFTPTK
>NC_014562.1|WP_013357173.1|607834_608524_+|molybdate-ABC-transporter-permease-subunit
MILSDPEWQAVLLSLKVSGIAVLGSLPFGILMAWILVRCRFPGKALLDSLIHLPLVLPPVVVGYLLLVSLGRRGIIGEKLFDWFGFSFAFSWRGAALASAVIAFPLMVRAIRLALEAVDSRLEQAARTLGAGRWRVFFTITLPLTLPGVIAGTVLAFARSLGEFGATITFVSNIPGETRTLPLAMFTLIETPGAEGAAARLCVIAIVLALGSLLASEWLARAGRKRMGS
>NC_014562.1|WP_013357174.1|608523_609582_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLSLNFMQQQGDHQLEVDLQIPAKGITAIFGVSGAGKTSLINAISGLTQPQRGRIELNDRLLFDAEQKIALPPEKRRIGYVFQDARLFPHYRVRGNLQYGMAPSMKAQFDSLVSLLGLEALLSRFPLSLSGGEKQRVAIGRALLTAPDMLLLDEPLASLDLPRKRELMPYLQKLAKQVDIPMLYVSHSLDEILHLADNVLVLDAGKVKAFGPLERVWSSSAMRPWLPVSELTSVLRVQVLEQHPDYPMTALSLGDQHIWVSRVNQPVKTPLRIRIASSDVSLALQPPQHTSIRNILPAQVVELLEVGDQVEVKLRIGISELWARITPWARDELGIRPEQWLYAQIKSVSVTP
>NC_014562.1|WP_013357175.1|609582_610401_-|pyridoxal-phosphatase
MSYRVIALDLDGTLLTPAKTILPQSIDALNQARQAGVHVAIVTGRHHCAIHPFYQALQLDTPAICCNGTYLYDYQAKKVLASDPLDPQLALQVIERLDQQQIHGLLYVDDAMLYQTPTGHVMRTLKWAESLPEHQRPLFRQVPDLAQAARDAGSIWKFALSHDNHQELQQFATAVEAELGLACEWSWHDQVDIAKGGNSKGKRLAQWVESLGLSMSDVIAFGDNYNDLSMLETAGLGVAMGNADEAIKARAKKVIGTNLETGIADTLRQFVL
>NC_014562.1|WP_013357176.1|610556_611558_+|6-phosphogluconolactonase
MKQVVYTASPESQQIHVWQMNDEGALTLLQVIDVAGQVQPMVVSPKRDFLYVGVRPNFRVLAFQIAADGTLTEAGQAPLPGSPTHISTDREGRFLFCGSYNDACVSVSPIGDDGIPQAPLQVINGLDGCHSANIDTDNKTLYVPALKQDRICLFALGADGQLTPRKQAQVTTVEGAGPRHMQFHPGGQFAYCVNELDSTVDVWALNTGEGEAESVQTLDMMPPDFSGTRWAADIHLTPDGRFLYACDRTSSTLAIFSVSELGDELTLEGFQPTETQPRGFNIDHSGRFLVAAGQKSHHIEVYAISEPKGLLQPLGRYAVGQGPMWVVIHQLQA
>NC_014562.1|WP_013357177.1|611914_612391_-|kinase-inhibitor
MRVFSQDFNDGEKMPEKHVFNGMGYQGENISPHLAWEAAPEGTKSFVVTCYDPDAPTGSGWWHWVVANIPASTTSLPQGAGSGKASLPAGAIQTRTDFGQAGYGGAAPPQGETHRYIFTVHALDVETIEVDEGASGAMVGFNVHFHALASASLTVNYQ
>NC_014562.1|WP_013357178.1|612466_613771_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTPVFSSDDARFDRQHIWHPYTSMKDPLPCYPVVAAQGFQLQLADGRELVDGMSSWWAAIHGYNHPRLNRALTEQVTQMSHVMFGGITHPAAVALCRQLVAMTPEALECVFLADSGSVAVEVSVKMALQYWLGRGETRQQFLTLKRGYHGDTFAAMSVCDPDNSMHSLWRGYLPEHHFAAAPACGFNDEWDERDFDDFARLIEQHHRQLAAVILEPIVQGAGGMRFYHPRYLQQVREACDRYGVLLIADEIATGFGRTGKLFACEHAGITPDILCVGKALTGGMMTLAATLTTRDVADTISRSAAGCFMHGPTFMGNPLACAVAAESLCMLADGHWQRQVAAIEQQLRAELLPLRRSPQVADVRVLGAIGVVETHQPVNMAALQQFFVEQGVWIRPFGRLIYLMPPYIITPQALSQLVQAIGSALEHLQHFAA

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Crispr_ID: NC_014562_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014562_2

2708874-2708985

Orphan

Consensus_repeat	Method
CGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014562_2

>merge|NC_014562|2|2708874-2708985|CRISPRCasFinder
CGTTCACGGGCGCACCTCAGGGATGAGGTGCGTACTAAAAACGCCGGGAGCGTTTTTGAACAGCGCAAAGCGTTGGCCCGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA

>NC_014562|2|2|2708874-2708985|CRISPRCasFinder
CGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA	CTAAAAACGCCGGGAGCGTTTTTGAACAGCGCAAAGCGTTGGCC
CGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014562.1\|WP_013358963.1\|2721436_2722192_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320693
NC_014562.1\|WP_013358947.1\|2704177_2705356_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NC_014562.1\|WP_013358954.1\|2710656_2711316_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_014562.1\|WP_081463853.1\|2705352_2706675_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NC_014562.1\|WP_013358949.1\|2706721_2707300_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NC_014562.1\|WP_013358952.1\|2709138_2710377_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_014562.1\|WP_013358945.1\|2701431_2702529_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_014562.1\|WP_013358946.1\|2702961_2704164_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NC_014562.1\|WP_013358957.1\|2714373_2715249_-\|small-conductance-mechanosensitive-channel-MscS	unknown	unknown	gnl\|CDD\|182386
NC_014562.1\|WP_013358941.1\|2695800_2697240_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
NC_014562.1\|WP_013358942.1\|2697257_2698001_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NC_014562.1\|WP_008925677.1\|2707470_2707800_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NC_014562.1\|WP_013358956.1\|2713616_2714240_-\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463
NC_014562.1\|WP_013358958.1\|2715438_2716518_-\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406
NC_014562.1\|WP_013358944.1\|2701021_2701408_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_014562.1\|WP_013358955.1\|2712749_2713472_-\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
NC_014562.1\|WP_013358943.1\|2698067_2700941_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_014562.1\|WP_013358959.1\|2716623_2717787_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_014562.1\|WP_013358962.1\|2719170_2721165_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NC_014562.1\|WP_010248822.1\|2711498_2712404_+\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144

Protein	Function_ID	Function_description	E-value
NC_014562.1\|WP_013358963.1\|2721436_2722192_+\|M48-family-metallopeptidase	gnl\|CDD\|320693	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein. This subfamily contains peptidase M48 Ste24p protease loiP (formerly yggG)-like family are mostly uncharacterized proteins that include E. coli loiP and ycaLG, considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. LoiP has been shown to be a metallopeptidase that cleaves its targets preferentially between Phe-Phe residues. It is upregulated when bacteria are subjected to media of low osmolarity, thus yggG was named LoiP (low osmolarity induced protease). Proper membrane localization of LoiP may depend on YfgC, another putative metalloprotease in this subfamily.	1.31732e-118
NC_014562.1\|WP_013358947.1\|2704177_2705356_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NC_014562.1\|WP_013358954.1\|2710656_2711316_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	2.28785e-136
NC_014562.1\|WP_081463853.1\|2705352_2706675_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NC_014562.1\|WP_013358949.1\|2706721_2707300_-\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	2.61888e-114
NC_014562.1\|WP_013358952.1\|2709138_2710377_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_014562.1\|WP_013358945.1\|2701431_2702529_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_014562.1\|WP_013358946.1\|2702961_2704164_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NC_014562.1\|WP_013358957.1\|2714373_2715249_-\|small-conductance-mechanosensitive-channel-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	3.81994e-158
NC_014562.1\|WP_013358941.1\|2695800_2697240_+\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NC_014562.1\|WP_013358942.1\|2697257_2698001_-\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	2.89055e-141
NC_014562.1\|WP_008925677.1\|2707470_2707800_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	1.91531e-65
NC_014562.1\|WP_013358956.1\|2713616_2714240_-\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	7.87592e-112
NC_014562.1\|WP_013358958.1\|2715438_2716518_-\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NC_014562.1\|WP_013358944.1\|2701021_2701408_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.45923e-73
NC_014562.1\|WP_013358955.1\|2712749_2713472_-\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	2.64204e-132
NC_014562.1\|WP_013358943.1\|2698067_2700941_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_014562.1\|WP_013358959.1\|2716623_2717787_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_014562.1\|WP_013358962.1\|2719170_2721165_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NC_014562.1\|WP_010248822.1\|2711498_2712404_+\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	2.70609e-160

>NC_014562.1|WP_008925677.1|2707470_2707800_+|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQQDALNSAAEDLNQRLQDLKVRTRVTNTEQLVFIAALNVCHELAQEKVKTRDYAANMEQRIRMLQQTIEQALVEQGRISEREGAKFE
>NC_014562.1|WP_013358949.1|2706721_2707300_-|YecA-family-protein
MSLQNATPDYNALAAVLSQQGVGMTPAEMHGLLSGILCGGNQDTSWKTLVHDLANEGMAFSHTLAVPLAALHEHTATTLEDDGFLFQLMLPADDDITVFDRADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRTIAQLGYEEDEDQEELEHSLEEVIEYVRVAALLCHDTFTRPQPTAPEVQKPTLH
>NC_014562.1|WP_081463853.1|2705352_2706675_-|Xaa-Pro-aminopeptidase
MISLERYLQRRQALLAKMAPGSAALIFAAPEVTRSNDTEYPFRQSSDFSYFTGFNEPQALLVLIKSDENHNHSVLFNRVRDPAAEVWSGRRLGQEAAPEKLGVDRALPWSDIGEQLHLLLNGLDVIYHAQGEYAHADTLVFSALDKLRRGFRQNLSAPATVTDWRPWVHEMRLFKDAEEIALLRRAGEISALAHTRAMQICQPGMFEYQLEGEIHHEFTRHGARYPSYNTIVGAGENGCILHYTENESEMRDGDLVLIDAGCEFYGYAGDITRTFPVNGKFSPAQRAIYDIVLASLKRSLEMFRPGVSIREVNDEVVRIMITGLVELGILEGDVDTLLAEEAHRRFFMHGLSHWLGLDVHDVGHYGTPSRDRILEPGMVLTVEPGLYIAPDADVPAQYRGIGIRIEDDIVITEDGIENLTDSVVKEADEIEALMAAAKQA
>NC_014562.1|WP_013358947.1|2704177_2705356_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MTILIAGGGMTGATLALAISHLTQGTLPVTLIESSEPGSRAHPGFDGRAIALSAGTCQQLADINLWQRIASCATPITDIHVSDRGHAGFVSLAAADYAIPALGQVVELFDVGQRLFAELKKAPGVTLRCPARVTHAQRSEQQVEVKLDSGEQLSGKLLVAADGTRSALAASCGIQWQRDDYQQLAVIANVTTALPHQGRAFERFTEHGPLALLPMSGNRLSLVWCHPLSQRERIEQWSEAEFLSQLQRAFGWRLGKFTHTGQREYYPLALHRAISPATHRVAVVGNAAQTLHPIAGQGFNLGLRDVMSLAETLAAAHRQQQDPGSYAVLNHYQQRRQPDRAATIGITDGLVRVFANRYGPMVAGRNLGLLAMDHLPWLRNQLAERTLGWVKR
>NC_014562.1|WP_013358946.1|2702961_2704164_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQTFDVVIAGGGMVGLAVACGLQGSGLRIAVLEKSPEPPLALSASASIRVSAINAASERLLQKLDVWSSILSLRCRAYHGMEVWDKDSFGTIAFDDEQQGLSHLGHIIENPVIHNALWQRASACSDVTLMAPSQLQQVAFGDNEAFITLQDGSMLSARLMIAADGANSWLRNKADIPLTFWDYDHHALVANVRTEKPHDAVARQVFHGDGILAFLPMQDPHLSSIVWSLSPQEASRLETMPDALFNQQLSVAFDMRLGLCQLESERKSFPLVARYARNFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIGEIRRLHQQGKDIGQHLYLRRYERSRKHSAAMMLAGMQGFREIFAGNNPAKKLLRDVGLKLADRLPGVKPMMLKQAMGLNDLPAWLR
>NC_014562.1|WP_013358945.1|2701431_2702529_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MTQQTPLFEQHQACGARMVDFHGWMMPLHYGSQIDEHHVVRSDAGMFDVSHMTIVDLTGPRTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFMSETFFRLVVNSATREKDLAWITQHAEGYGITLTERDDLALIAVQGPQAQQKAQTLFSEEQRLAVAGMKPFFGVQSGDLFIATTGYTGEAGYEIAMPAEEAANFWQRLLAAGVKPAGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTVCWEPADRDFIGREALELQRERGTEKLVGLILTEKGVLRNGQPVRFTDDQGQLQEGIITSGSFSPTLGYSIALARVPASIGSTAIVEIRNRQMPVQVTRPVFVRAGKPVAQ
>NC_014562.1|WP_013358944.1|2701021_2701408_-|glycine-cleavage-system-protein-GcvH
MSNVPNTLKYRDSHEWVRKEADGSYTVGITEHAQELLGDMVFVDLPEVGATFAAGEECAVAESVKAASDIYAPISGEIVAVNEALTDSPEQVNSEPYDSGWLFKIKASDASEIDTLLDADAYKASIDE
>NC_014562.1|WP_013358943.1|2698067_2700941_-|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLEHNGAFIERHIGPSPEQQAQMLDAIGARSLDALISTIVPADIQLPGPPAVGEAATEQQALAELKAIASQNLRYKSWIGMGYSAVITPPVILRNMLENPGWYTAYTPYQPEVSQGRLEALLNFQQLTLDLTGMDIASASLLDEATAAAEAMAMAKRVSKLKNANKFFIADDIHPQTLDVVRTRAETFGFELIIDSADKASDHDDLFGVLLQQVGTTGEAHDYSALIAGLKARKVVVSMAADFMSLVLLEAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFASRDEHKRSMPGRIIGVSRDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIAGLYAVFHGPAGLKRIASRIHRFTNILAAGLQQGGLKLRHQHWFDTLTVEVADKAAVLNRALSFGVNLRSDIHNAVGITLDETTCRDDILALFAILLGDEHGQDLEKLDSEVASESHAIPAGLQRHSEILTHLVFNRHHSETEMMRYMHSLEKKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPAEQATGYLQMIGQLSQWLVQLTGYDALCMQPNSGAQGEYAGLLAIRRYHESRGEGDRHLCLIPSSAHGTNPASAQMAGMDVVVVACDKQGNIDLGDLREKAAQAGDKLSCIMVTYPSTHGVYEETIREVCQIVHQYGGQVYLDGANMNAQVGITTPGYIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIDGVLTQQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASSVAILNANYIASRLQSAYPVLYTGREGRVAHECILDIRPLKEQTGISELDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKIELDRFIDAMLAIRMEIDRVTAGEWPLDDNPLVNAPHTQLEIVSEWSHPYSRELAVFPAGSHNKYWPTVKRLDDVFGDRNLFCSCVPMSDYQ
>NC_014562.1|WP_013358942.1|2697257_2698001_-|SDR-family-oxidoreductase
MKLALVTGGSRGIGRATSLLLAARGYRVAVNYRQREAEAQQLVAQIQQQGGEAFAVQADISDEAQVMAMFAQLDQQSVPLALLVNNAGILFQQCRTEQLDAARLHKVFATNVIGTFLCCREAVKRMGTHHGGQGGAIVNVSSAASRTGAPGEYVDYAASKGAMDTLTKGLSLEVAQQVIRVNGVRPGFIYTEMHADGGEPGRVDRLASIIPMGRGGEAEEVAEAIVWLASDAASYVTGSIIDAAGGR
>NC_014562.1|WP_013358941.1|2695800_2697240_+|6-phospho-beta-glucosidase
MSAELQLPKGFLWGGAVAAHQVEGGWDQGGKGVSIADVLTGGSHGVDRVITDGVQPGHFYPNHKGVEFYSHYKQDVALFAEMGFKCFRTSIAWTRIFPNGDEQQPNEAGLQFYDDLFDELLKYGIEPVITLSHFEMPYHLVKEYGGWHNRKVVDFFVRFSEVVLKRYKNKVKYWMTFNEINNQRNWQYPLFGYCCSGVIFTEHEKPEEAMYQVMHHQFVASARVVKLGHAINPDFQIGCMIAMVPVYPFSCHPDDVVLAQESMHQRYVFSDVQMRGYYPAYTLKEWARKGYNIQMEADDAATLRQGCADYVGFSYYMSNAVKTDASGVDDPITGFEGVVKNPHVKASDWGWQIDPVGLRYAMNEMYERYQKPLFIVENGFGAIDKPNADGLIEDDYRIDYLRAHIEEMKKAVTYDGVELMGYTPWGCLDCVSFTTGQYDKRYGFIHVNKNDDGSGDFSRAKKKSFSWYQQVIASNGENL
>NC_014562.1|WP_013358952.1|2709138_2710377_-|phosphoglycerate-dehydrogenase
MAKVSLEKDKIKFLLVEGVHQSALENLRAAGYTNIEFHKGALDSDALKASIRDAHFIGIRSRSQLTKEIFAAAEKLVAVGCFCIGTNQVDLQAAASRGIPVFNAPFSNTRSVAELVIGEMLLMLRGIPEANAKAHRGIWNKIAKGSFEARGKKLGIIGYGHIGMQLGVLAESLGMHVFFYDIENKLPLGNATQVRHLADLLNMSDVVSLHVPETASTQDMIGAEQLAQMKPGALLINASRGTVVDIPALCDALASKHVGGAAIDVFPTEPATNSEPFISPLSEFDNVILTPHIGGSTEEAQENIGIEVAGKLAKYSDNGSTLSAVNFPEVSLPIHGISASRLLHIHENRPGVLTAINQIFAEQGINIAAQYLQTSPFMGYVVIDIDAEPEVAENALHLMKAIPGTIRARLLY
>NC_014562.1|WP_013358954.1|2710656_2711316_-|ribose-5-phosphate-isomerase-RpiA
MTQDELKKAVGWAALDYVQPGTVVGVGTGSTAAHFIDALATVRHQIEGAVSSSDASTQKLKSLGIQVFDLNEIDLLSVYVDGADEINPQMQMIKGGGAALTREKIVAAVAETFICIADASKEVDVLGRFPLPVEVIPMARSYVARQLVKMGGLPEYRQNVVTDNGNIILDVHNLRILDPIELEKTINALPGVVTVGLFAARGADIALIGGPDGVKTIKK
>NC_014562.1|WP_010248822.1|2711498_2712404_+|LysR-family-transcriptional-regulator-ArgP
MKRPDYRTLQALDSVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVRTVPPRPTEQGQKLLALLHQVELLEEEWLGDENSGTTPLLLSLAVNADSLATWLLPALKDVLADSPVRLNLQVEDETRTQERLRRGEVVGAVSIQPQPLPSCLVDQLGALDYLFVASRDFADRFFPNGVTRSALLKAPAVAFDHLDDMHQAFLQQNFDLSPGSVPCHIVNSSEAFVQMARQGSTCCMIPHLQIERELASGELIDLTPGLCQRRMLYWHRFAPESRLMRRVTDALIAHGHRVLRQDDVAA
>NC_014562.1|WP_013358955.1|2712749_2713472_-|oxidative-stress-defense-protein
MKLKALALAAIMSAGALPGVHADELPNGPHVVTSGKATVDARPDIATLSIVVNVSSKDAADAKKQADSRVAQYFDFLQKNGIEKKDIDAANLSTQPEYDYTKEGKSVLKGYRAVRQVQVTLRQLDKLNDLLDGALKSGLNEVRSVELGVANPESYKEQARKAAIKKATQQASQLAEGFNAKLGSIYSIRYQVANYQPMPMNRMYKAAAAADTSAQETYDQQSINFDDQVDVVFELQPNTP
>NC_014562.1|WP_013358956.1|2713616_2714240_-|arginine-exporter-ArgO
MISLYFQGLALGAALILPLGPQNAFVMNQGVKRQYHLMTAALCSLSDILLICGGIFGGSALLSQSPLLLMVITWAGVAFLLWYGWGALRSAFRGEADLTDGAPLKQSRGRIIATLLAVTWLNPHVYLDTFVVLGSLGGQLPTTTARQWFALGTISASILWFFGLALLAAWLSPRLRTAKAQRIINLLVGAVMWFIALQLARQSIAGF
>NC_014562.1|WP_013358957.1|2714373_2715249_-|small-conductance-mechanosensitive-channel-MscS
MEDLHVVDGLNNAGNWLIRNQALIISYAVNIVAAIAIIIIGMVIARIISNAVNRLLRARHIDATVADFLSALVRYGVIAFTIIAALGRIGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVTFRPFRTGEFVDLGGVMGTVLHVQIFSTTLRTGDGKIVVVPNGKIISGNIVNFSREPVRRNEFIIGVAYEADVDEVIALLQQVVEADSRVLKEKGIQIGLNELAASSMNFVVRCWSNSGDLQDVYWELLKNFKRALDSKGIGIPYPQMDVHLHQKSVPEAVETQVQ
>NC_014562.1|WP_013358958.1|2715438_2716518_-|class-II-fructose-bisphosphate-aldolase
MSKIFDFVKPGVVTGDDVQKIFKVAKENKFALPAVNCVGTDSINAALEAAAKVKAPIIIQFSNGGAAFIAGKGFKTDKPQGAAIFGAIAGAHHVHLMAEQYGVPVILHTDHCAKKLLPWIDGLLDAGEEYFQKNGKPLFSSHMIDLSEESLEENIEISSKYLARMAKLDMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVNYAYEKLHAISPRFTIAASFGNVHGVYKPGNVKLTPTILRDSQKYVCEKHGLPHNALDFVFHGGSGSSAAEIEESISYGVIKMNIDTDTQWATWDGILQYYKKNEGYLQSQLGNPEGDDKPNKKYYDPRVWLRSAQASMVVRLEQAFKELNAVDVL
>NC_014562.1|WP_013358959.1|2716623_2717787_-|phosphoglycerate-kinase
MSVIKMTDLDLAGKRVLIRADLNVPVKEGKVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSGTNVTLAKDYLDGVEVGAGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGVGKFAPIACAGPLLSAELEALGKVMSNPERPLVAVVGGSKVSTKFDVLQSLVKIADTVIVGGGIANTFVAIDNNVGKSLYEPDFVEAAKGLRDQHGIPVPTDSRVGTEFSETAPATVKKVSEVADNEEIMDFGDETAQAMAAILKDAKTILWNGPVGVFEFPNFRKGTEIVANAIADSDAFSVAGGGDTLAAIDLFGIEDKISYISTGGGAFLEFVEGKKLPAVAMLEERAKQ
>NC_014562.1|WP_013358962.1|2719170_2721165_-|transketolase
MPSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRGYLNHNPTNPLWADRDRFVLSNGHGSMLIYSLLHLTGYDLPLSELENFRQLHSKTPGHPEYGYTVGVETTTGPLGQGIANAVGFAIAERTLAAQFNRPGHDIVDHNTYVFMGDGCMMEGISHEVCSLAGTLKLGKLVAFYDDNGISIDGHIDGWFTDDTAKRFEAYGWHVVRGVDGHDADAIAKAIDEAKSVSDKPSLLMCKTVIGFGSPNKAGTHDSHGAPLGDDEVALTRKQLGWNHAPFVIPSDIYAEWDAKEAGQAKESAWDEKFTAYAQAHPELAAEFKRRVSNELPANWQEESQKFVEQLQANPAKIASRKASQNAIEAFGKILPEYLGGSADLAPSNLTIWSGSKPINEDAAGNYIHYGVREFGMTAIANGLALHGGFLPYTATFLMFVEYARNAARMAALMKIRQIMVYTHDSIGLGEDGPTHQPVEQMASLRTTPNMSLWRPCDQVESAVAWKYAIERQDGPTALIFSRQNLAQQERDAAQLANVARGGYVLKDCDGTPELILIATGSEVELAVGAWDKLTSEGRKVRVVSMPSTDAFDKQSDEYRESVLPKAVSARVAIEAGIADYWFKYTGLNGAIVGMTSFGESAPADQLFELFGFTVDNVVAKAKALLA
>NC_014562.1|WP_013358963.1|2721436_2722192_+|M48-family-metallopeptidase
MKIQKTVLALGLATLLSGCQGLDNNGLMQSGAQAFQAYTLSDDQVKQLSDKSCEQMDKDNQVAPANSEYQQRLNKIAAALGDNINGVPANYKVYQTKDVNAWAMANGCIRVYSGLMDMMTDNEVEGVLGHEMGHVALGHTRKAMQLAYATTAARTAAASVGGVIGSLSQSQLGEMGEKLVNAQFSQTQESQADDYSYDLMKKRNINPEGLVTSFEKLAKLEQGRQSSMFDSHPASEARAEHIRERIAADAK

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Crispr_ID: NC_014562_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014562_3

3548755-3548945

Orphan

Consensus_repeat	Method
TGCCGCCGTCAGTGCGCCGGTAAACAGCGCGGCTCCGGCATCGTCTGAGGCCGC	PILER-CR

2 spacers

The CRISPR arrays of NC_014562_3

>merge|NC_014562|3|3548755-3548945|PILER-CR
GCGCCGGTAAACAGCGCGGCACCGATGCCACCTGAGGCTGCTGCAACCCGCCAGCCAGCGGGTGCTGCCGTCAGTGCGCCGGTAAACAGCGCGGCTCCGGCGTCGTCTGAGGCCGCTGGATCCTCACAATCTGCTAATGCCGCCGTCAGTGCGCCGGTAAACAGCGCGGCTCCGGCATCGTCTGATGCCGC

>NC_014562|3|1|3548755-3548945|PILER-CR
GCGCCGGTAAACAGCGCGGCACCGATGCCACCTGAGGCTGCTGCAACCCGCCAG	CCAGCGGGTGCTGCCGTCAGTGCGCCGGTAAACAGCGC
GGCTCCGGCGTCGTCTGAGGCCGCTGGATCCTCACAATCTGCTAATGCCGCCGT	CAGTGCGCCGGTAAACAGCGC
GGCTCCGGCATCGTCTGATGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014562.1\|WP_033784694.1\|3560696_3560894_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371309
NC_014562.1\|WP_013359648.1\|3555993_3557001_+\|endoglucanase	unknown	unknown	gnl\|CDD\|366548
NC_014562.1\|WP_013359647.1\|3555541_3555985_+\|cellulose-synthase	unknown	unknown	gnl\|CDD\|281496
NC_014562.1\|WP_013359644.1\|3546541_3548653_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|274400
NC_014562.1\|WP_013359641.1\|3543388_3544411_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236898
NC_014562.1\|WP_013359637.1\|3538686_3540297_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NC_014562.1\|WP_013359651.1\|3558955_3560494_-\|cellulose-biosynthesis-protein-BcsE	unknown	unknown	gnl\|CDD\|371330
NC_014562.1\|WP_013359639.1\|3541497_3542400_+\|dipeptide-ABC-transporter-permease-DppC	unknown	unknown	gnl\|CDD\|182833
NC_014562.1\|WP_013359643.1\|3545689_3546493_+\|cellulose-synthase-operon-protein-YhjQ	unknown	unknown	gnl\|CDD\|274549
NC_014562.1\|WP_013359636.1\|3535098_3536790_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	unknown	unknown	gnl\|CDD\|183198
NC_014562.1\|WP_013359655.1\|3564231_3566520_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	unknown	unknown	gnl\|CDD\|236851
NC_014562.1\|WP_013359653.1\|3560893_3561625_+\|cellulose-synthase-operon-protein-YhjQ	unknown	unknown	gnl\|CDD\|368976
NC_014562.1\|WP_041457149.1\|3545102_3545699_+\|cellulose-biosynthesis-protein-BcsO	unknown	unknown	gnl\|CDD\|374957
NC_014562.1\|WP_013359638.1\|3540468_3541488_+\|dipeptide-ABC-transporter-permease-DppB	unknown	unknown	gnl\|CDD\|182834
NC_014562.1\|WP_013359640.1\|3542412_3543399_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182906
NC_014562.1\|WP_013359650.1\|3558761_3558959_-\|cellulose-biosynthesis-protein-BcsF	unknown	unknown	gnl\|CDD\|371386
NC_014562.1\|WP_013359654.1\|3561621_3564222_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|236918
NC_014562.1\|WP_013359646.1\|3551726_3555542_+\|cellulose-biosynthesis-protein-BcsC	unknown	unknown	gnl\|CDD\|377509
NC_014562.1\|WP_041457150.1\|3557107_3558772_-\|cellulose-biosynthesis-protein-BcsG	unknown	unknown	gnl\|CDD\|371656
NC_014562.1\|WP_013359635.1\|3534353_3534782_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649

Protein	Function_ID	Function_description	E-value
NC_014562.1\|WP_033784694.1\|3560696_3560894_+\|hypothetical-protein	gnl\|CDD\|371309	pfam10945, CBP_BcsR, Cellulose biosynthesis protein BcsR. CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).	7.10516e-15
NC_014562.1\|WP_013359648.1\|3555993_3557001_+\|endoglucanase	gnl\|CDD\|366548	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8.	2.44023e-100
NC_014562.1\|WP_013359647.1\|3555541_3555985_+\|cellulose-synthase	gnl\|CDD\|281496	pfam03500, Cellsynth_D, Cellulose synthase subunit D.	1.79784e-09
NC_014562.1\|WP_013359644.1\|3546541_3548653_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|274400	TIGR03030, Cellulose_synthase_UDP-forming, cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.	0
NC_014562.1\|WP_013359641.1\|3543388_3544411_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	0
NC_014562.1\|WP_013359637.1\|3538686_3540297_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_014562.1\|WP_013359651.1\|3558955_3560494_-\|cellulose-biosynthesis-protein-BcsE	gnl\|CDD\|371330	pfam10995, CBP_GIL, GGDEF I-site like or GIL domain. The GIL domain, for GGDEF I-site like domain, is a c-di-GMP binding domain on the BcsE proteins of enterobacteria. It is not essentail for cellulose synthesis but is critical for maximal cellulose production. Cellulose production in enterobacteria is controlled by a two-tiered c-di-GMP-dependent system involving BcsE and the PilZ domain containing glycosyltransferase BcsA.	0
NC_014562.1\|WP_013359639.1\|3541497_3542400_+\|dipeptide-ABC-transporter-permease-DppC	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	0
NC_014562.1\|WP_013359643.1\|3545689_3546493_+\|cellulose-synthase-operon-protein-YhjQ	gnl\|CDD\|274549	TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.84244e-54
NC_014562.1\|WP_013359636.1\|3535098_3536790_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	gnl\|CDD\|183198	PRK11560, PRK11560, kdo(2)-lipid A phosphoethanolamine 7''-transferase.	0
NC_014562.1\|WP_013359655.1\|3564231_3566520_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	gnl\|CDD\|236851	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB.	0
NC_014562.1\|WP_013359653.1\|3560893_3561625_+\|cellulose-synthase-operon-protein-YhjQ	gnl\|CDD\|368976	pfam06564, CBP_BcsQ, Cellulose biosynthesis protein BcsQ. This is a family of bacterial proteins involved in cellulose biosynthesis. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)). A second component of the extracellular matrix of the multicellular morphotype (rdar) of Salmonella typhimurium and Escherichia coli is cellulose. The family does contain a P-loop sequence motif suggesting a nucleotide binding function, but this has not been confirmed.	1.89498e-99
NC_014562.1\|WP_041457149.1\|3545102_3545699_+\|cellulose-biosynthesis-protein-BcsO	gnl\|CDD\|374957	pfam17037, CBP_BcsO, Cellulose biosynthesis protein BcsO. This is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	4.54771e-14
NC_014562.1\|WP_013359638.1\|3540468_3541488_+\|dipeptide-ABC-transporter-permease-DppB	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	0
NC_014562.1\|WP_013359640.1\|3542412_3543399_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182906	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional.	0
NC_014562.1\|WP_013359650.1\|3558761_3558959_-\|cellulose-biosynthesis-protein-BcsF	gnl\|CDD\|371386	pfam11120, CBP_BcsF, Cellulose biosynthesis protein BcsF. CBP_BcsF is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	2.36138e-15
NC_014562.1\|WP_013359654.1\|3561621_3564222_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|236918	PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional.	0
NC_014562.1\|WP_013359646.1\|3551726_3555542_+\|cellulose-biosynthesis-protein-BcsC	gnl\|CDD\|377509	pfam05420, BCSC_C, Cellulose synthase operon protein C C-terminus (BCSC_C). This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.	7.31272e-147
NC_014562.1\|WP_041457150.1\|3557107_3558772_-\|cellulose-biosynthesis-protein-BcsG	gnl\|CDD\|371656	pfam11658, CBP_BcsG, Cellulose biosynthesis protein BcsG. CBP_BcsG is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)).	0
NC_014562.1\|WP_013359635.1\|3534353_3534782_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	6.55395e-77

>NC_014562.1|WP_013359644.1|3546541_3548653_+|UDP-forming-cellulose-synthase-catalytic-subunit
MSKIGFYLLLLVLAPVAAVIIITPMDSQKQYIFGLISIGMMFLLGFSKSRKITVVMVILSALMSSRYIWWRTTETLHFNSEVEAILGIGLYLAELYVWLILILGFLQTTWPLKRTIEPLPDDTRLWPTVDIYVPSYNESLDVVRDTVLAAQCIDYPRDKLKIYLLDDGKRSEFARFAADVGVGYITRDDNKHAKAGNLNHAMKITKGELICIFDCDHVATRTFLQATVGPFLKDPKLALLQTPHYFYSPDPFERNLRAARSIPNEGALFYGPVQQGNDNWNATFFCGSCAVIRRSALEEIGGFAVETVTEDAHTALKMQRLGWGSAFLSIPLAAGLATERLGLHIIQRTRWARGMTQIFRVDNPLFGRGLKWQQRLCYLNAMLHFQFGLPRVAFLTAPLAYLLFNLNIIHSSASLIFAYVLPHLVMSLYVNSRMNGRFRYTFWGEIYETVMCFHLVIPTILTLLSPKHGKFNVTDKGGVLDQGFFDFHIVRPHVIVALLLGIGIVAGVVRAVMHDYFGVDPYVIALNVGWAIFSLIILMAAIAVARETKQVRKTIRVDVQIPAIIHYASGISSRTLTSNLSMGGAQLDAPDGRHETDEIEEIDLLLKSGAITIPVSKISGDDESIRLRFEAMPLARRRELVRVVLARADAWIQPEYKQDNPLISLGTIIRTVFELFWLTWKGRHDKRKKVDPVAAAAKEDGAA
>NC_014562.1|WP_013359643.1|3545689_3546493_+|cellulose-synthase-operon-protein-YhjQ
MPLVCVCSPKGGVGKTTLAANLAWSLARSGSKVLAIDFDVQNALRLHFGVPLHDGRGFVARSEEQADWSQSILTTGGNIFVLPYGDVTEPQRERFEENLMKAPHFIKRGLDTVLNYPGLVIVADFPPGPGPALKAMTALADMHLVVMLADTASVSLLPQIEENRMTGKPLNNKQGHYFILNQCDNRRNINRDVTAFMQQRLGDNLLGVVHRDESVGEANASQQSVYDFSPASAAAFDIELIAKRVSSILNITVGNGEVQASIRTNHF
>NC_014562.1|WP_041457149.1|3545102_3545699_+|cellulose-biosynthesis-protein-BcsO
MKNNYDDLQRFKEKTQTLDIDFKDMSGQAQEAAEHSKWALIRQLAKEDHQTSLGGGQRIDLPQPQPLRGDEFTAPPPEAPARPATLSAQPTTSARSSILDSLSGSSLPAARTAERDPSSLFPPPPPQKRVAAEPVAVSHPEPVRPAMAANLKPAITPVTPHSEPERFSALFRSRDSEPSNLPKETLLEPLLEKIALCR
>NC_014562.1|WP_013359641.1|3543388_3544411_+|ABC-transporter-ATP-binding-protein
MSHETTKDQFLLQAIDLKKHYPVKKGLFGQERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIETPTEGQLYWHGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVSQILEEPLVINTQLTKAERREKTLEMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVLIADEPVSALDVSVRAQVLNLMMDLQQDMGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGSKEAIFANPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCHRRFGTCVQLQPKLKNYGGQEIACFAVDQDENQPVGVAEKVS
>NC_014562.1|WP_013359640.1|3542412_3543399_+|dipeptide-ABC-transporter-ATP-binding-protein
MALLNVDKLSVHFGDDKAPFRAVDRISYQVEQGQVVGIVGESGSGKSVSSLAIMGLIDFPGKVMAEKLEFNQRDLKRISERERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKRTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLDLQRQENMALILITHDLALVAEAAHHIIVMYAGQVVESGKATDIFKAPSHPYTQALLRALPEFAADKARLASLPGVVPGKYDRPAGCLLNPRCPYATDLCRQEEPELRTIPGRQSKCHYPLDDAGRPTYES
>NC_014562.1|WP_013359639.1|3541497_3542400_+|dipeptide-ABC-transporter-permease-DppC
MSVVDPGSVTVAPKPMTPFQEFWHYFKRNKGAVVGLVYIIIVLLCAIFADVLAPHAPAEQFRDALLHPPVWQEGGNWSYILGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIFGVIFGLLAGYLGGVVDAIIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALPHYIRLTRAAVLVEVNRDYVTASGVAGAGMLRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQYAQSAWWVVTFPGLVILLTVLAFNLMGDGLRDALDPKLKQ
>NC_014562.1|WP_013359638.1|3540468_3541488_+|dipeptide-ABC-transporter-permease-DppB
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVLIMAGERGISPERHAQLMALLGLDQPLWKQYLNYINGVLHGDLGISLKSRIPVWDEFVPRFKATLELGICAMIFAVAIGIPVGVLAAVKRGSIFDHTAVGISLTGYSMPIFWWGIMLIMLVSVQLNLTPVSGRVGDTVFLDDSMPLTGFMLIDTFFWGEPGDFHDAVMHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIVVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIEALQRRDYPVVQGGVLLTAVLIIVVNLLVDLLYGVVNPRIRHKK
>NC_014562.1|WP_013359637.1|3538686_3540297_+|ABC-transporter-substrate-binding-protein
MINSLAKSGMLKVGLSLIAMTVAAGVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSRQIYNRLVEFTIGTTELHAALAEKWDVSEDGKTYTFHLRKGVKWQTTKDFKPTRDFNADDVVFTFERQLDKNNAYHGVSGGSYEYFEGMDMPKLISKIEKVDENTVRFVLTRPESPFLADLGMDFASILSKEYADNMLKAGTPQNVDLNPVGTGPFQLLQYQKDSRILYKANPDYWGTKPKIDRLVFSITPDASVRYAKLQKGECQVMPYPNPADIARMKQDKNINLYEQAGLNVGYLSYNVEKKPLDNLKVRQALTMAVNKKAIIDAVYQGAGQPAKNLIPPTMWGYNDDVKDYAYDPEKAKALLKEAGMADGFSIDLWAMPVQRPYNPNARRMAEMIQSDWAKIGVKAKIVTYEWGEYLKRAKAGEHQTVMMGWTGDNGDPDNFLATLFSCSAAKDGSNYSRWCDKSFEDQIQPARATADQAKRIEYYKQAQVVMHDQAPALMIAHSTVYEPVSKKVSGYKVDPLGGHYFAQVDIKE
>NC_014562.1|WP_013359636.1|3535098_3536790_+|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase
MNYIKTLTQQKLSLLLALYLGILLNLPIFYRRFDGFLRQSTVTNWLTAVTEVVAIVLLTFFLMRLLSLGGKWFYRVLATMIVLISVAAAYYMAFFNVVIGYGIVASVMTTDTDLSKEVVGYHFILWMVLVSALPLLMIWRNRLSMTLNEQLRTPGQRLKPTLIMLLCVALVWLPIRYFDKLQKHNEEITNIDLPSYGGVVAHSYLPSNWLAAVGLFAWTRVDESLNSEELLDPAKKFTYVAPAGLDDTYVVFVIGETTRWDHMGMLGYERDTTPKLSKEKNLVAFRGESCDTATKLSLRCMFVREGGTMDNPGRTLKEQNVFAVMKELGFTSELFAMQSEVWFYDNVNANNFAFREQIGSEKRNQGKAVDDMLLVPEMKASLDRFPKGKHLVVLHTKGSHYLYSQRYPRSFAKYQPECMGVDETCSKAQLINAYDNSVLYVDSMLDSVLDQLRDKKAIVFYAADHGESISENMHLHGTPREMAPPEQFRVPMMVWASDKYLEDSQNRSNFERLQAQQRVGRTHRHVELFDTILGCLGYTSPDGGINPANNWCQAPAKGQAKAL
>NC_014562.1|WP_013359635.1|3534353_3534782_+|organic-hydroperoxide-resistance-protein
MSLEQVVYRAKAKATGGRDGRATSSDGVLDVKLGVPKEMGGAGGEVTNPEQLFAAGYSACFLGAMKFVAGRDKIAMPKDAWIEGEVGIGPIPDGFGIEATLNIHLPEMDEAEAQKLVDAAHIVCPYSNATRNNIDVTLNIIR
>NC_014562.1|WP_013359646.1|3551726_3555542_+|cellulose-biosynthesis-protein-BcsC
MKKNLLSAGIRHALLLGSALALSPPLLAAESANPALQALFDQASYWHQKAHDDLAKASLQKVLMVEPGNTQALYLLALYSQQGGDTAAATEYRARLSQVSPSDPHLSELDNARQMQTIPQAQLSLARQQARSGNIPAALQTWRNTFSGNEPPPSVAAEYYLTMAGDRTLLPQAVEALRQFAAQHPQDTGARLALGKALTYQEPTRREGIEVLSSLASGNQDADRSLRQALLWLGPQPSDAALYQTWQQRHPQDSAVIDYYRKNVGGAEKGAGFSALNSGDVGGAQTSFEKVLGANPQDADALAGMGYVAQRAGRYQEAADYLQRSAQQGGDQGSSRQQQADDARFYAQLASAQQALKNGDSAQALTLSEPLVQADGEKGLAARLFRADVLRRTNQPEQAEQIYRTILQSDADNRSAKEGLFYVLRQQNRSAEASTLLGALPDSVRQSVTPRANEADALRQQAKRQLAAGNNAAAIATLQQGIQRYPSDGWLRLDLARLYRQQGDTLLAANVMQPVMRNGASTSELYAGALNASESGGWQQASALLARIPANAQTAAMRELAQRVNFNLQMSTADQYLAQGATAAAANTLKALTVTPPANPVDAGNLAQKLAKAGDLSSAVSVVRTNLQRGVQGNAGDYAAQMAVLNQAGLGSEAQRFLSNPELQARSTPTQLAGIRNGYLINEVDRLRQQRQYAVAYDKLIGALQQDPQNRDLMFAMARLYQDGKMNRDAGVVYDYLMTQDTPTQDARVGAINVALAQNNVPRANALSRGLNTTTQTPDRLLLLARVAEANGNHSQAMAYLRSARGQLTGLQGAQSGSVPTVGGLALADNPFINRTTSPVGRSPSSYGTVLPWQAAPAGQTAGVTSQGEQAAGSTTVSQQSQVLHDVNTMMDSLQEKTATWSQGMVQVRGRDGESGLSKLTEAKAPLTFSTVPFETARLDFTATPVSLTAGSGAADAWRRFGTNALSQGRVVAAGGATVNDLPTATTDSQTASGVELNLALKGDSYKVDIGSTPLGQDLSTLVGGVQWSPKLTDFLTLILTGERRAITDSLLSYVGAEDKASGKRWGRVTKNGAHALLSYDNGDAGFYAGGGAYSYLGENVASNNNLQATAGAYVRPFHSDDRELKVGMSLAWMDFSKNLSYFSYGQGGYFSPQNYASVSFPIEFSRKFDDLKVNIGGAAGYQTYSQDKSAYFPADASLQSELESLAASGSVKDAYYSGGSKNGIGYNLHAGADYKLNKDVTIGGQLGYDTFGDYNESSARLYVRYLFGEK
>NC_014562.1|WP_013359647.1|3555541_3555985_+|cellulose-synthase
MSEHSGVSHPYQPGWFDLVSVLIDGMIANAGQQEAEAFLYRMGESLATRYPLPESRTVQDLEREANLQLARFNWGFVQLQPEEKALLIAYHALPAGDNRHSPADWQAAFGAVIAGLFSGWLQGQGGSRMVPVTLELNDGSTLHYRYQ
>NC_014562.1|WP_013359648.1|3555993_3557001_+|endoglucanase
MKRKPFWMGWICTVLLLACSAQANASGWDTFKSRFLTAEGRITDTANNNVSHTEGQGYGMLLAVANNDRATFDRLWQWTRTQLRNPQTDLFYWRYVPGSDNPVADKNNASDGDVLLAWALQRAAQKWQVESYQQESDRIQRAIIKLDVTSFGGHTVLLPGAQGFNKTSYVVLNPSYFLFQAWREFGERSHLQVWDKLINDGFDLLGKLSFGKTGLPLDWVALNADGSVAPAVGYSNRFSYDAIRVPLNIWWYDPHSLALVPFQRVWQGYSRMLTPAWFDVLANAPAPYHLEGGLLAVRDLTLNETGYLSDKLAADQNYFSASLQLLTWQAFQEKR
>NC_014562.1|WP_041457150.1|3557107_3558772_-|cellulose-biosynthesis-protein-BcsG
MKNDQPAAAHSSRLWSCWRGLGGWNFYFLVKFALLWYGYLNFHALSNLVFLAWLLFPLPSVRLHRLRHWVSIPVGFALFWHDTWLPGLSSILSQGDQLAGFSGAYLLDLADRFINWQMVGALFVLLVLYLFISQWVRITVLVSLMLIWLNVLTIAGPAMSLLPTRATTPQVVLNQTPAAASQAAAVPDGLDQSAAPTSASLTAWLSRFYESERKRVTHFPDSLPADSQPFDILVINICSLAWSDMDASQLRNHPLWQHFDIMLTNYNSATSYSGPAGIRLLRASCGQTSHSELYKPTDSRCYLFDNLAKLGFKEQLMMDHTGVFGNYLKELREGGDIQAPLMSQAGIAPELTSFDGSPVLNDAQLMQRWLDDRSKSSDARSATFYNLIPLHDGTRELGSTQTAPWKPRAQLLFDQIDAFLTQLEKSGRRVMVLVVPEHGAALEGDKMQMSGLRDIPSPAITHVPVGIKFVGMKAPHQGQSLNIDAPTSLLAISEIVSRVVDGQVFNAPNVNMSVLTDKLPQTPVVSENDGAVVMMYQGKPWIRLNGGDWVPYPQ
>NC_014562.1|WP_013359650.1|3558761_3558959_-|cellulose-biosynthesis-protein-BcsF
MNLMDWVQIALLIVVILLILKPVWHQWLPRRWNGLLNRLLPARALKSEGHWQRQSPKTDAKINEK
>NC_014562.1|WP_013359651.1|3558955_3560494_-|cellulose-biosynthesis-protein-BcsE
MKNSFSLGLLHVQPELTALQTPGCYWVTCARQDDARTFIRQVISHQQAVTLISADQPPRDLLTPDPVGGPDRIPLFSLSKSKRSLLQLESDFLRTLGSKNGLVIFNSSAAQWDKLDDAELTRWIKGMRHTLHKRKLTLLIVTSGSTIINLSNNLQRYFRQLDGVAHLGFQQDSWQYRINWWYAAERLLADRAIRLGCEEDRFFTLNENQEPLSLNDEQHYLADKIVLEGAPPLSRQWQLFDDNEQVWLRAQQANAATVIFSLTRSDLINELAKFVHSLRRGRGNGLKIVVREMGASLRYSDERLLLACGVNVIVPTNAPMSRFLTTLEGVQGQVFNRRVPASLEALTASLQPLHEKGYLRLDAFCQSVSQLISNTLLPENDKGLLVALRPVPQLKPQQILTLCKPRRFGDLVTVLEDRVILFLSSCRYNDLDKALKYIFSLPHDELFANRMVWFEDNQILAEVSNIKKLTPMAIQDLTPVSETTRAAVESRHETQERSAPLPITLLPENESR
>NC_014562.1|WP_033784694.1|3560696_3560894_+|hypothetical-protein
MKNQNLYTPVATAGDRQDDISALRDAFSLHSFRYVDIAREERLKEIVSRWPLLAETLPSQPEQPD
>NC_014562.1|WP_013359653.1|3560893_3561625_+|cellulose-synthase-operon-protein-YhjQ
MPLIALQGVRGGVGTTSLCAGLGWALASLGERVLLIDGSPVSQLGVHFNLPAQQESGWMQALCDDGEWQHAALRYPNGPDLLPHGVLSHQHALTIAHQNEAVAAPLLQALPDLQARYQWIIFDLPADPLPWHETLYPALDGILCVTQPDANCHLRLSQRHFPARTRFIINQFNANSRLQQDLHQLWMASLTELIPLLIHRDEALAESLMMKQPVGEYRPHALVSEEIITLANWLLLNLNGVRS
>NC_014562.1|WP_013359654.1|3561621_3564222_+|UDP-forming-cellulose-synthase-catalytic-subunit
MNPLRWLLTAPAWQSLHSGYTTARGNGASRFASALHLFWSVLGLMLLRFESPAWQRVIQQRRRLYPHISPERPRPLDILRYLIQTLWLIVIRLPGAGGRDGVNRLRVLTGWRHHGYRWLDNLVARSQTHSIDTRLEQRLKRLSPLMRRSLFVVVALFASLLALLCISQPFGLMTQFIFVVLLWGLAMLVRRIPGRFPTMMLIVLSLTVSCRYLWWRYTSTLNWDDPLSLIFGLLLIAAETYAWVVLVLGYFQTLWPLNRQPVSMPADRSQWPSVDLLVPTYNEPLSVVRPTLYAALGIDWPKDRLTIYLLDDGNRPEFRDFAASVGINYVVRPSNEHAKAGNINHALKKYCRSDFVSIFDCDHVPTRSFLQMAMGWFIKDPRLAMLQTPHHFFSPDPFERNLGRFRRTPNEGSLFYGLVQDGNDTWDATFFCGSCAILRRTALEEIGGIAVETVTEDAHTSLRLHRRGYTSAYIRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNPLFGKGLKWVQRLCYANAMLHFLSGIPRLVFLLAPLAFLLCHAYIIYAPALAIAIYVLPHMLHTSLTNSRIQGRWRHSFWSEVYETVLAWYIARPTTVALFNPHKGKFNVTAKGGLVEEQHLDWVITKPYMLLVLLNLAGVLMAFWRIQHGPANEILTVCVSLIWVIYNMIILGGAVAVSVEARQIREAHRVEIAMPAAIAREDGHMLPCTLRDYSDGGVGLEMREPDALRENEKVWLLLRRGQQEFSFPCQVQRVFGRRAGVRLHQLTTQQHIDFIQCTFARADTWALWQDGFPEDKPVQSLADIMILGFKGYLRLAEYGPPQLRRLFNLLTAGVSWLASLLPQGIGRVPASKNLH
>NC_014562.1|WP_013359655.1|3564231_3566520_+|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB
MTTTGINRWVAALLLGSATLSSAVAQESAPVMATGETAVQSLPQQPAAPLRSSQLSFAKLAPPPGSMTLSGTRPSGQIEFGVRSDEVVTRALLNLSYRPSPALLPTLSQLKVYLNDELVSLITLTPEQPGKQNQMQLAIDPRFITDFNRVRFELVGHYANICENPANSTIWLDIGKESGLDLTLQKLPLKNDLSHFPEPFLDTRDTRPLTLPMVFAARPDVNQQRAAAILASWFGSKAAWRGQHFPVLYNQLPQQQHAVVFATNDARPDFLKNLPPVMKPTVAMVSQPDSPYEKMLLILGRNDDDLLTAVQGIAQGELLLRGDSATVDRVTLLAPRQPYDAPNWVRTDRRTTFAELTQYENQLQSDGLQPNPISLTLNLPPDLFLVRARGIDMDLSYRYTSPVHPDGSRLAVNLNNQFIQDYPLVPKNTAGQQLLHIPLIQGMMDKNHELLIPALRLGVVNQLRFDFDYANTFMGGTADGRCETVTPVGHHVVVDDSSSIDFSGYRHYIEMPSLQSWANAGFPFSRYADLAQTLVLVQPNPDAQQVSTLLNALGNMGAQTGYPALRVQLTDDWGTAKKQDADLLMIGDIPKDLQDDRRITALVDATASWLKTPARRVSQPVQPLSEAERAAESTTAIGSRGPLATVIGFQSPFYDQRSVVALLADGSPRSWQLLDEALADSGKRQAISGSTAIIRESGVNSLRVGETYFVGHLPWWERLWSLLSSHPFWLALCALFVVVLFALMTWRLMRIITRRRLLDEDE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014562_3	3.2\|3548901\|21\|NC_014562\|PILER-CR	3548901-3548921	21	NC_014562.1	3548946-3548966	1	0.952

1. spacer 3.2|3548901|21|NC_014562|PILER-CR matches to position: 3548946-3548966, mismatch: 1, identity: 0.952

tggatcctcacaatctgctaa	CRISPR spacer
tggaacctcacaatctgctaa	Protospacer
**** ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014562_2	2.1\|2708908\|44\|NC_014562\|CRISPRCasFinder	2708908-2708951	44	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	450661-450704	2	0.955
NC_014562_2	2.1\|2708908\|44\|NC_014562\|CRISPRCasFinder	2708908-2708951	44	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	116049-116092	2	0.955
NC_014562_1	1.1\|604092\|55\|NC_014562\|CRISPRCasFinder	604092-604146	55	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	539503-539557	4	0.927
NC_014562_1	1.1\|604092\|55\|NC_014562\|CRISPRCasFinder	604092-604146	55	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	267220-267274	4	0.927
NC_014562_1	1.1\|604092\|55\|NC_014562\|CRISPRCasFinder	604092-604146	55	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	450661-450715	4	0.927
NC_014562_1	1.1\|604092\|55\|NC_014562\|CRISPRCasFinder	604092-604146	55	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	116038-116092	4	0.927
NC_014562_1	1.1\|604092\|55\|NC_014562\|CRISPRCasFinder	604092-604146	55	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	160177-160231	4	0.927
NC_014562_2	2.1\|2708908\|44\|NC_014562\|CRISPRCasFinder	2708908-2708951	44	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	160188-160231	4	0.909
NC_014562_2	2.1\|2708908\|44\|NC_014562\|CRISPRCasFinder	2708908-2708951	44	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	267231-267274	4	0.909
NC_014562_2	2.1\|2708908\|44\|NC_014562\|CRISPRCasFinder	2708908-2708951	44	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	539503-539546	4	0.909
NC_014562_1	1.1\|604092\|55\|NC_014562\|CRISPRCasFinder	604092-604146	55	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	15129-15183	5	0.909

1. spacer 2.1|2708908|44|NC_014562|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 2, identity: 0.955

ctaaaaacgccgggagcgtttttgaacagcgcaaagcgttggcc	CRISPR spacer
ataaaaacgccgggagcgtttttgaacaacgcaaagcgttggcc	Protospacer
 ***************************.***************

2. spacer 2.1|2708908|44|NC_014562|CRISPRCasFinder matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 2, identity: 0.955

ctaaaaacgccgggagcgtttttgaacagcgcaaagcgttggcc	CRISPR spacer
ataaaaacgccgggagcgtttttgaacaacgcaaagcgttggcc	Protospacer
 ***************************.***************

3. spacer 1.1|604092|55|NC_014562|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 4, identity: 0.927

ctaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccggcaacggga	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccgggaacgggc	Protospacer
 .********************************************* ******

4. spacer 1.1|604092|55|NC_014562|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 4, identity: 0.927

ctaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccggcaacggga	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccgggaacgggc	Protospacer
 .********************************************* ******

5. spacer 1.1|604092|55|NC_014562|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 4, identity: 0.927

ctaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccggcaacggga	CRISPR spacer
ataaaaacgccgggagcgtttttgaacaacgcaaagcgttggcccgggaacgggc	Protospacer
 ********************************* ************ ******

6. spacer 1.1|604092|55|NC_014562|CRISPRCasFinder matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 4, identity: 0.927

ctaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccggcaacggga	CRISPR spacer
ataaaaacgccgggagcgtttttgaacaacgcaaagcgttggcccgggaacgggc	Protospacer
 ********************************* ************ ******

7. spacer 1.1|604092|55|NC_014562|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.927

ctaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccggcaacggga-	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccgg-aacgggcg	Protospacer
 .********************************************* ******

8. spacer 2.1|2708908|44|NC_014562|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.909

ctaaaaacgccgggagcgtttttgaacagcgcaaagcgttggcc	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcc	Protospacer
 .**************************.***** *********

9. spacer 2.1|2708908|44|NC_014562|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 4, identity: 0.909

ctaaaaacgccgggagcgtttttgaacagcgcaaagcgttggcc	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcc	Protospacer
 .**************************.***** *********

10. spacer 2.1|2708908|44|NC_014562|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 4, identity: 0.909

ctaaaaacgccgggagcgtttttgaacagcgcaaagcgttggcc	CRISPR spacer
acaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcc	Protospacer
 .**************************.***** *********

11. spacer 1.1|604092|55|NC_014562|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.909

ctaaaaacgccgggagcgtttttgaacaacgcaacgcgttggcccggcaacggga	CRISPR spacer
acaaaaacgccgggagcatttttgaacaacgcaacgcgttggcccgggaacgggc	Protospacer
 .***************.***************************** ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

307719 : 317391

Streptococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013356907.1\|307719_308832_-	porin OmpC	Q1MVN1	Enterobacteria_phage	5.6e-111	56.2
WP_013356908.1\|309071_310175_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-59	42.4
WP_013356909.1\|310185_311439_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.5e-91	44.1
WP_013356910.1\|311799_312531_+	chromophore lyase	A0A2I6PIE7	Escherichia_phage	4.9e-47	37.5
WP_013356911.1\|313436_313904_+	glycoside hydrolase family protein	H9C148	Vibrio_phage	1.0e-26	45.3
WP_013356912.1\|313900_314248_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.4e-20	44.7
WP_013356913.1\|314244_314538_+	hypothetical protein	NA	NA	NA	NA
WP_013356914.1\|314742_316497_+	phage-like EPS depolymerase	A0A1S6L3G8	Erwinia_phage	6.1e-152	46.4
WP_003854408.1\|317178_317391_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.3e-23	71.4

DBSCAN-SWA_2

379077 : 386802

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013356969.1\|379077_380226_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.5e-90	46.4
WP_009091760.1\|380225_380558_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-11	36.3
WP_013356970.1\|380583_382431_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_013356971.1\|382441_383410_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.1e-45	40.3
WP_013356972.1\|383469_384048_-	DUF3251 domain-containing protein	NA	NA	NA	NA
WP_013356973.1\|384064_384502_-	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	2.5e-06	51.9
WP_009091750.1\|384688_385138_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_013356974.1\|385141_386242_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.0e-47	34.3
WP_013356975.1\|386331_386802_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	48.0

DBSCAN-SWA_3

985496 : 1025650

Salmonella_phage(20.0%)

head,integrase,tRNA,holin,bacteriocin

attL 1008852:1008865|attR 1025927:1025940

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013357493.1\|985496_986609_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_003849831.1\|986651_987125_-	NUDIX hydrolase	NA	NA	NA	NA
WP_041456761.1\|987169_987832_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_013357495.1\|987936_989187_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.2e-18	85.2
WP_148235569.1\|989321_989924_+	hypothetical protein	NA	NA	NA	NA
WP_013357496.1\|989970_991116_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	1.8e-152	73.0
WP_041456763.1\|991090_991342_-	excisionase	NA	NA	NA	NA
WP_013357497.1\|991367_992093_-	DUF2786 domain-containing protein	A0A1W6DYA0	Aeromonas_phage	4.5e-08	29.9
WP_049788862.1\|992092_992530_-	hypothetical protein	NA	NA	NA	NA
WP_041456764.1\|993022_993658_-	helix-turn-helix domain-containing protein	B1B6L9	Salmonella_phage	4.9e-19	32.1
WP_071822173.1\|993756_993981_+	hypothetical protein	NA	NA	NA	NA
WP_013357498.1\|993973_994462_+	hypothetical protein	A0A1C9II13	Salmonella_phage	3.9e-64	69.8
WP_071822174.1\|994711_994909_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_013357499.1\|994898_995846_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.0e-85	60.9
WP_013357500.1\|995858_997199_+	chromosome partitioning protein ParB	A0A2H4J902	uncultured_Caudovirales_phage	1.8e-79	69.1
WP_013357501.1\|997922_998909_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_013357502.1\|998916_1000251_+	ATP-binding protein	NA	NA	NA	NA
WP_041456768.1\|1000580_1001150_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.0e-28	41.0
WP_148235584.1\|1001280_1002306_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	1.5e-158	76.9
WP_013357504.1\|1002340_1002727_+	hypothetical protein	NA	NA	NA	NA
WP_148235585.1\|1002720_1003020_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_013357506.1\|1003012_1003480_+	glycoside hydrolase family protein	H9C148	Vibrio_phage	2.7e-22	39.9
WP_013357507.1\|1003479_1003734_+	hypothetical protein	NA	NA	NA	NA
WP_148235570.1\|1003982_1004501_+	hypothetical protein	NA	NA	NA	NA
WP_041456776.1\|1004668_1004920_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_041456778.1\|1005020_1005335_+	hypothetical protein	NA	NA	NA	NA
WP_041456779.1\|1005368_1005800_+	hypothetical protein	G0YQ33	Erwinia_phage	3.8e-15	46.4
WP_013357509.1\|1006060_1006690_+	hypothetical protein	F1C5D5	Cronobacter_phage	1.9e-84	72.7
WP_013357510.1\|1006721_1007180_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	9.5e-57	70.4
WP_013357512.1\|1008205_1009153_+	hypothetical protein	G0ZND5	Cronobacter_phage	1.3e-135	79.0
1008852:1008865	attL	NA	NA	NA	NA
WP_041456782.1\|1009133_1010096_+\|head	SPP1 gp7 family phage head morphogenesis protein	I6S615	Salmonella_phage	1.1e-99	62.5
WP_041456784.1\|1010252_1010621_+	hypothetical protein	F1C5E3	Cronobacter_phage	5.3e-34	56.6
WP_013357515.1\|1010617_1011001_+	hypothetical protein	G0ZNE4	Cronobacter_phage	1.4e-45	66.1
WP_013357516.1\|1011061_1012342_+	hypothetical protein	A0A291AXC5	Shigella_phage	7.0e-65	55.4
WP_013357517.1\|1012397_1014830_+	hypothetical protein	I3PGW2	Xanthomonas_phage	3.6e-86	36.2
WP_049788863.1\|1014830_1015124_+	hypothetical protein	A0A191ZCU4	Erwinia_phage	8.6e-19	55.8
WP_013357518.1\|1015573_1015762_+	DUF2767 family protein	NA	NA	NA	NA
WP_148235586.1\|1017303_1018305_+	hypothetical protein	NA	NA	NA	NA
WP_041456786.1\|1018570_1019551_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_041456787.1\|1019929_1020367_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013357521.1\|1020484_1021354_-	hypothetical protein	NA	NA	NA	NA
WP_033786031.1\|1022007_1022247_+	hypothetical protein	NA	NA	NA	NA
WP_010260799.1\|1022547_1023531_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013199813.1\|1023532_1025650_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1025927:1025940	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1202630 : 1212855

Tupanvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013357680.1\|1202630_1204559_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.8e-126	36.9
WP_033732471.1\|1204562_1205114_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.7e-15	32.9
WP_004157374.1\|1205213_1205411_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003853267.1\|1205455_1205812_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_106120997.1\|1205934_1205979_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_013357682.1\|1206126_1207110_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.9e-34	37.6
WP_013357683.1\|1207124_1209512_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.4e-10	32.0
WP_003853259.1\|1209516_1209819_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.3e-13	40.0
WP_013357684.1\|1209998_1210982_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_013357685.1\|1211032_1211578_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	7.7e-13	37.4
WP_013357686.1\|1211578_1212328_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_013357687.1\|1212396_1212855_+	C40 family peptidase	A0A217EQL1	Bacillus_phage	5.5e-12	37.5

DBSCAN-SWA_5

1659627 : 1783090

129

Erwinia_phage(24.07%)

terminase,tail,protease,portal,integrase,tRNA,plate,holin,lysis

attL 1706015:1706032|attR 1788289:1788306

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013358085.1\|1659627_1660326_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_013358086.1\|1660370_1662287_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	1.4e-85	31.9
WP_013358087.1\|1662536_1663274_-	carbonic anhydrase family protein	NA	NA	NA	NA
WP_013358089.1\|1663918_1664086_-	hypothetical protein	NA	NA	NA	NA
WP_013358090.1\|1664427_1664787_+	hypothetical protein	NA	NA	NA	NA
WP_013358091.1\|1664863_1665208_+	RidA family protein	NA	NA	NA	NA
WP_013358092.1\|1665220_1665415_-	YoaH family protein	NA	NA	NA	NA
WP_013358093.1\|1665525_1666905_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	2.0e-41	31.5
WP_013358094.1\|1666888_1667452_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_013358095.1\|1667638_1669003_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_013358096.1\|1669228_1670791_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_013358097.1\|1670927_1672520_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	8.2e-39	44.4
WP_013358100.1\|1673029_1673992_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_033733019.1\|1674055_1674856_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_013358102.1\|1674871_1675717_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_013358103.1\|1675808_1676267_+	DUF986 domain-containing protein	NA	NA	NA	NA
WP_013358104.1\|1676263_1677073_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_003852684.1\|1677210_1677420_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	5.9e-22	76.6
WP_013358105.1\|1678068_1679073_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013358106.1\|1679091_1679364_-	YebO family protein	NA	NA	NA	NA
WP_013358107.1\|1679576_1679813_+	membrane protein	NA	NA	NA	NA
WP_013358108.1\|1679843_1680635_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_013358109.1\|1680820_1682191_+	MFS transporter	NA	NA	NA	NA
WP_003852678.1\|1682531_1683413_-\|protease	protease HtpX	NA	NA	NA	NA
WP_013358110.1\|1683657_1685697_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	9.4e-88	34.7
WP_013358111.1\|1685716_1686418_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_013358112.1\|1686514_1687015_-	GAF domain-containing protein	NA	NA	NA	NA
WP_013358113.1\|1687229_1688474_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_013358114.1\|1688442_1691076_+	PqiB family protein	NA	NA	NA	NA
WP_193372122.1\|1691118_1692585_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_013358116.1\|1692586_1693234_-	metallophosphoesterase	K7P6H8	Enterobacteria_phage	2.7e-57	49.5
WP_033783299.1\|1693466_1693715_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_013358118.1\|1693864_1695223_-	MFS transporter	NA	NA	NA	NA
WP_013358119.1\|1695357_1697388_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	4.4e-21	26.2
WP_013358120.1\|1697644_1698238_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_013358121.1\|1698252_1699725_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_013358122.1\|1699748_1701431_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	9.3e-57	30.5
WP_013358123.1\|1701859_1702210_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_013358124.1\|1702196_1702526_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_013358125.1\|1702726_1703869_+	acyltransferase	Q6QI96	Burkholderia_phage	1.6e-36	31.4
WP_013358126.1\|1704027_1704288_+	hypothetical protein	NA	NA	NA	NA
WP_013358127.1\|1704404_1704590_+	hypothetical protein	NA	NA	NA	NA
WP_013358128.1\|1704686_1704824_-	hypothetical protein	NA	NA	NA	NA
WP_013358129.1\|1705039_1706062_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	9.7e-25	25.3
1706015:1706032	attL	NA	NA	NA	NA
WP_013358130.1\|1706351_1706636_-	hypothetical protein	NA	NA	NA	NA
WP_193372133.1\|1707574_1708039_+	hypothetical protein	NA	NA	NA	NA
WP_041457224.1\|1708561_1709380_+	hypothetical protein	NA	NA	NA	NA
WP_158307098.1\|1709790_1710105_+	hypothetical protein	NA	NA	NA	NA
WP_013358131.1\|1710133_1711168_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	7.9e-184	90.4
WP_013358132.1\|1711167_1712931_-\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	0.0e+00	96.3
WP_013358135.1\|1714024_1714447_+	hypothetical protein	F1BUQ1	Erwinia_phage	1.6e-45	70.3
WP_013358136.1\|1714548_1715016_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	5.5e-60	76.3
WP_013358137.1\|1715012_1715459_+	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	6.9e-44	66.4
WP_013358138.1\|1715567_1717127_+	hypothetical protein	NA	NA	NA	NA
WP_148235573.1\|1717092_1717491_+	hypothetical protein	NA	NA	NA	NA
WP_013358139.1\|1717570_1718155_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	3.0e-87	82.0
WP_013358140.1\|1718151_1718502_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	4.1e-44	75.9
WP_013358141.1\|1718506_1719415_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.6e-135	84.8
WP_013358142.1\|1719407_1720016_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.2e-94	81.7
WP_013358143.1\|1720012_1721059_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	2.1e-123	65.5
WP_013358144.1\|1721058_1721649_+\|tail	tail fiber assembly protein	K7P870	Enterobacteria_phage	3.4e-38	44.2
WP_013358145.1\|1721702_1722143_-	hypothetical protein	NA	NA	NA	NA
WP_041456897.1\|1722160_1722694_-	hypothetical protein	NA	NA	NA	NA
WP_013358147.1\|1722998_1724168_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.9e-197	89.2
WP_193372128.1\|1724624_1725188_+	recombinase RecT	E5AGD9	Erwinia_phage	2.7e-61	69.3
WP_013358149.1\|1725541_1725823_+	hypothetical protein	NA	NA	NA	NA
WP_041456899.1\|1726001_1726466_+	hypothetical protein	NA	NA	NA	NA
WP_041456900.1\|1726493_1726739_+	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	2.0e-37	95.0
WP_013358151.1\|1726735_1727053_+	hypothetical protein	NA	NA	NA	NA
WP_041457228.1\|1727087_1727300_+	hypothetical protein	A0A2H4IYB3	uncultured_Caudovirales_phage	3.9e-29	81.4
WP_081463845.1\|1727656_1728481_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.2e-131	96.0
WP_013358153.1\|1728789_1729137_-	YebY family protein	NA	NA	NA	NA
WP_013358154.1\|1729165_1730041_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_041456903.1\|1730045_1730423_-	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA
WP_033733020.1\|1730573_1730807_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.1e-15	60.3
WP_033783311.1\|1730806_1731475_+	exodeoxyribonuclease X	NA	NA	NA	NA
WP_013358157.1\|1731468_1733532_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_013358158.1\|1733658_1734315_-	DUF533 domain-containing protein	NA	NA	NA	NA
WP_013358159.1\|1734481_1735660_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_010258674.1\|1735694_1736333_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_013358160.1\|1736547_1738023_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	1.2e-76	35.8
WP_013358161.1\|1738386_1739313_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013358162.1\|1739373_1740816_+	pyruvate kinase	NA	NA	NA	NA
WP_013358163.1\|1740901_1742134_+	MFS transporter	NA	NA	NA	NA
WP_013358165.1\|1742485_1743460_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_013358166.1\|1743585_1744917_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	6.3e-16	40.0
WP_013358167.1\|1744930_1745878_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_013358168.1\|1745955_1746711_+	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	9.7e-14	29.5
WP_013358169.1\|1746707_1747493_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_013358170.1\|1747493_1748498_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.4e-07	25.9
WP_013358173.1\|1749216_1749744_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.8e-09	32.4
WP_013358174.1\|1749781_1750525_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013358175.1\|1750810_1751242_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_013358176.1\|1751241_1753020_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	2.8e-11	26.4
WP_013358178.1\|1753231_1754053_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	5.3e-50	72.4
WP_013358179.1\|1754122_1754518_+	MAPEG family protein	NA	NA	NA	NA
WP_041456908.1\|1754599_1755328_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_013358181.1\|1755324_1756293_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_013358182.1\|1756297_1756921_-	LysE family translocator	NA	NA	NA	NA
WP_013358183.1\|1757065_1758163_+	glycerol dehydrogenase	NA	NA	NA	NA
WP_013358184.1\|1758193_1759042_-	hypothetical protein	NA	NA	NA	NA
WP_013358185.1\|1759353_1760376_-	acyl-CoA--6-aminopenicillanic acid acyl-transferase	NA	NA	NA	NA
WP_041457231.1\|1760396_1761119_-	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	3.2e-38	42.2
WP_041456910.1\|1761121_1761778_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_013358188.1\|1761829_1762582_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_013358189.1\|1762710_1763265_-	hypothetical protein	NA	NA	NA	NA
WP_013358190.1\|1763261_1764590_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_013358191.1\|1764718_1765576_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013358192.1\|1765950_1766475_-\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	5.9e-18	31.3
WP_013358193.1\|1766471_1767878_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	8.7e-16	55.3
WP_071822184.1\|1767879_1768452_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	9.5e-46	46.5
WP_013358194.1\|1768448_1769651_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	4.5e-138	64.8
WP_013358195.1\|1769650_1770004_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.3e-50	80.3
WP_013358196.1\|1770000_1770657_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	6.3e-70	55.5
WP_013358197.1\|1770908_1771958_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.7e-113	59.0
WP_041456913.1\|1771963_1772269_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	8.9e-27	59.4
WP_013358199.1\|1772293_1772842_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.3e-55	64.1
WP_013358200.1\|1772841_1774908_-	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	8.3e-225	58.2
WP_013358201.1\|1774897_1775050_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.0e-15	78.0
WP_013358202.1\|1775085_1775547_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	9.7e-41	60.3
WP_013358203.1\|1775549_1775990_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.3e-58	76.0
WP_013358204.1\|1776000_1777146_-	DUF3383 family protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-166	77.7
WP_013358205.1\|1777149_1777686_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	3.1e-38	45.1
WP_041456915.1\|1778393_1778852_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	2.1e-35	56.9
WP_013358207.1\|1778848_1779388_-	lysozyme	H9C184	Pectobacterium_phage	3.5e-74	73.8
WP_135908398.1\|1779390_1779732_-	hypothetical protein	NA	NA	NA	NA
WP_013358209.1\|1780641_1781175_-	antitermination protein Q	U5P0A5	Shigella_phage	2.5e-40	62.5
WP_041456919.1\|1781725_1782160_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_013358211.1\|1782172_1783090_-	conserved phage C-terminal domain-containing protein	H2DE83	Erwinia_phage	2.4e-35	61.3
1788289:1788306	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2598165 : 2606182

uncultured_Mediterranean_phage(33.33%)

integrase

attL 2589343:2589356|attR 2611231:2611244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2589343:2589356	attL	NA	NA	NA	NA
WP_013358858.1\|2598165_2599635_-\|integrase	integrase	A0A0R6PGY7	Moraxella_phage	6.2e-25	27.3
WP_013358859.1\|2599792_2602354_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.2e-28	25.6
WP_009086923.1\|2602487_2603480_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.6e-32	37.6
WP_013358860.1\|2603537_2604638_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.8e-05	35.2
WP_013358862.1\|2604800_2605427_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.7e-36	49.1
WP_013358863.1\|2605420_2606182_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-65	52.8
2611231:2611244	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2803961 : 2915471

109

Salmonella_phage(52.38%)

tail,capsid,head,integrase,portal,tRNA,plate,holin,lysis,coat

attL 2856175:2856226|attR 2878951:2879002

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013359030.1\|2803961_2804531_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013359031.1\|2804553_2805069_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013359032.1\|2805094_2805790_+	molecular chaperone	NA	NA	NA	NA
WP_013359033.1\|2805797_2808245_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_179291187.1\|2808244_2809219_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013359035.1\|2809215_2810538_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-60	35.7
WP_013359036.1\|2810774_2811197_-	TonB system transport protein ExbD	NA	NA	NA	NA
WP_013359037.1\|2811203_2811926_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_013359038.1\|2812275_2813247_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_013359039.1\|2813296_2813803_+	TRAP transporter small permease	NA	NA	NA	NA
WP_013359040.1\|2813817_2815104_+	TRAP transporter large permease	NA	NA	NA	NA
WP_013359041.1\|2815237_2816428_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_033733897.1\|2816603_2817266_+	DedA family protein	NA	NA	NA	NA
WP_013359043.1\|2817296_2818205_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013359044.1\|2818408_2819233_+	2,5-didehydrogluconate reductase DkgA	A0A2H4PQR8	Staphylococcus_phage	2.3e-61	45.2
WP_013359045.1\|2819307_2820738_-	cell division protein FtsP	NA	NA	NA	NA
WP_013359046.1\|2820880_2821618_-	1-acylglycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
WP_013359047.1\|2821663_2823937_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.8e-86	35.1
WP_013359048.1\|2824129_2824894_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013359049.1\|2825061_2825643_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_013359050.1\|2825691_2826000_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013359051.1\|2826375_2827275_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_033784060.1\|2827368_2829264_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.6e-92	34.7
WP_013359053.1\|2829313_2829895_-	esterase YqiA	NA	NA	NA	NA
WP_013359054.1\|2829898_2830726_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_008925735.1\|2830768_2831194_-	DUF1249 family protein	NA	NA	NA	NA
WP_013359055.1\|2831190_2831802_-	ADP-ribose diphosphatase	NA	NA	NA	NA
WP_013359056.1\|2832040_2833507_+	outer membrane channel protein TolC	NA	NA	NA	NA
WP_013359057.1\|2833648_2834320_+	DUF1190 family protein	A0A173GEW8	Erwinia_phage	1.3e-41	47.1
WP_013359058.1\|2834327_2835488_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	3.6e-84	43.4
WP_013359059.1\|2835541_2836327_-	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_013359061.1\|2836563_2837220_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.1e-42	43.6
WP_013359062.1\|2837659_2838049_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_013359063.1\|2838087_2839512_-	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A1B1IUK5	uncultured_Mediterranean_phage	1.8e-37	29.1
WP_013359064.1\|2839582_2842435_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_013359065.1\|2842468_2843779_-	inorganic triphosphatase	NA	NA	NA	NA
WP_008925741.1\|2844052_2844673_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_041457092.1\|2844831_2846064_+	multifunctional CCA addition/repair protein	K4IEX3	Salmonella_phage	7.2e-83	44.6
WP_013359067.1\|2846079_2846898_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_013359068.1\|2847089_2847449_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
WP_003848436.1\|2847557_2848163_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_013359069.1\|2848389_2849403_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.9e-107	58.3
WP_001144069.1\|2849680_2849896_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013359070.1\|2850014_2851760_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-71	36.6
WP_013359071.1\|2851991_2853833_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_013359072.1\|2853913_2854432_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_041457094.1\|2854428_2855013_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013359074.1\|2855151_2855943_+	SDR family oxidoreductase	NA	NA	NA	NA
2856175:2856226	attL	NA	NA	NA	NA
WP_071822196.1\|2856366_2856585_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	6.8e-21	65.7
WP_013359077.1\|2857742_2858228_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-59	73.6
WP_009086867.1\|2861365_2861485_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.7e-10	76.9
WP_013359080.1\|2861499_2861808_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.8e-30	70.6
WP_013359081.1\|2861862_2862378_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.4e-80	84.8
WP_013359082.1\|2862390_2863560_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.1e-197	87.9
WP_013359083.1\|2863605_2864229_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.1e-71	75.1
WP_013359085.1\|2864930_2865323_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	6.1e-12	47.3
WP_013359086.1\|2866209_2868477_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_013359087.1\|2868676_2869084_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.0e-26	49.6
WP_013359089.1\|2869790_2870147_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	1.5e-41	66.7
WP_013359090.1\|2870143_2870722_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	7.1e-65	64.4
WP_013359091.1\|2870798_2871245_-	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	6.9e-44	64.3
WP_013359092.1\|2871237_2871669_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.0e-56	75.7
WP_013359093.1\|2871764_2872193_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	9.0e-33	54.6
WP_041457100.1\|2872189_2872564_-	hypothetical protein	NA	NA	NA	NA
WP_013359095.1\|2872565_2873075_-	lysozyme	E5G6N1	Salmonella_phage	4.7e-73	78.0
WP_013359096.1\|2873055_2873268_-	hypothetical protein	E5G6N0	Salmonella_phage	3.1e-18	60.3
WP_013359097.1\|2873271_2873475_-\|tail	tail protein X	E5G6M9	Salmonella_phage	5.4e-28	82.1
WP_013359098.1\|2873474_2873939_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.2e-59	70.8
WP_158307100.1\|2874038_2874278_-	hypothetical protein	E5G6M7	Salmonella_phage	3.7e-20	64.6
WP_013359099.1\|2874223_2875225_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	7.8e-112	66.4
WP_013359101.1\|2875530_2875758_-	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	1.1e-13	54.7
WP_041457102.1\|2875827_2876166_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	4.8e-29	58.9
WP_071822197.1\|2876129_2876318_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	6.1e-10	62.5
WP_013359103.1\|2876321_2876831_-	phage regulatory CII family protein	F1BUS6	Erwinia_phage	2.0e-55	65.5
WP_041457104.1\|2876865_2877102_-	hypothetical protein	NA	NA	NA	NA
WP_049788878.1\|2877192_2877813_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.0e-37	37.7
WP_013359104.1\|2877817_2878831_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	3.4e-115	62.0
WP_148235577.1\|2879655_2880132_+	hypothetical protein	NA	NA	NA	NA
2878951:2879002	attR	NA	NA	NA	NA
WP_013359106.1\|2880729_2881761_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.7e-160	79.2
WP_041457266.1\|2881810_2883208_-	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_013359108.1\|2883430_2884225_-	hypothetical protein	A0A0M4R2T6	Salmonella_phage	6.0e-22	31.1
WP_022549167.1\|2884228_2884426_-	hypothetical protein	NA	NA	NA	NA
WP_041457107.1\|2884682_2884868_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	1.1e-08	62.7
WP_013359111.1\|2886595_2887900_+	type II toxin-antitoxin system HipA family toxin YjjJ	NA	NA	NA	NA
WP_013359112.1\|2888160_2889258_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_013359113.1\|2889278_2890700_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_013359114.1\|2890969_2892445_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_041457109.1\|2892441_2893077_-	carbonic anhydrase	NA	NA	NA	NA
WP_041457110.1\|2893656_2894466_-	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_013359117.1\|2894572_2895280_+	polyphenol oxidase family protein	NA	NA	NA	NA
WP_013359118.1\|2895490_2897509_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_013359119.1\|2897509_2898628_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_013359120.1\|2898711_2899215_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_013359121.1\|2899211_2900900_-	chloride channel protein	NA	NA	NA	NA
WP_013359122.1\|2901046_2902033_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013359123.1\|2902288_2903257_+	TerC family protein	A0A291LBC5	Escherichia_phage	3.1e-33	35.2
WP_033784084.1\|2903492_2904725_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_041457112.1\|2905066_2905375_-	CcdB family protein	NA	NA	NA	NA
WP_013359125.1\|2905374_2905614_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_013359126.1\|2905892_2907383_-	altronate dehydratase	NA	NA	NA	NA
WP_013359127.1\|2907387_2908836_-	tagaturonate reductase	NA	NA	NA	NA
WP_013359128.1\|2908838_2910254_-	glucuronate isomerase	NA	NA	NA	NA
WP_013359129.1\|2910654_2911959_+	MFS transporter	NA	NA	NA	NA
WP_013359130.1\|2912045_2912822_+	transcriptional regulator ExuR	NA	NA	NA	NA
WP_003850219.1\|2913145_2913820_+	DedA family protein	NA	NA	NA	NA
WP_013359131.1\|2913819_2914167_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_041457268.1\|2914357_2914732_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_033733985.1\|2914767_2915073_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_041457113.1\|2915075_2915471_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014562

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection