CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_015728	Roseobacter litoralis Och 149 plasmid pRLO149_83, complete sequence	0 crisprs	NA	0
NC_015730	Roseobacter litoralis Och 149, complete sequence	0 crisprs	csa3,DEDDh,WYL,cas3	3
NC_015729	Roseobacter litoralis Och 149 plasmid pRLO149_63, complete sequence	0 crisprs	NA	1
NC_015741	Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1116449 : 1173504

Burkholderia_phage(16.67%)

transposase,integrase,lysis,protease,tRNA

attL 1129371:1129397|attR 1133176:1133202

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044025215.1\|1116449_1117442_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_044025216.1\|1117494_1117995_+	hypothetical protein	NA	NA	NA	NA
WP_013961023.1\|1118255_1119233_+	hypothetical protein	NA	NA	NA	NA
WP_044025217.1\|1119229_1119835_-	hypothetical protein	NA	NA	NA	NA
WP_044025546.1\|1120303_1120915_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.9e-36	42.6
WP_013961027.1\|1121096_1121687_-	hypothetical protein	NA	NA	NA	NA
WP_013961028.1\|1121840_1123055_+	hypothetical protein	NA	NA	NA	NA
WP_013961029.1\|1123054_1124629_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_013961030.1\|1124792_1125845_-	Fic family protein	NA	NA	NA	NA
WP_044025547.1\|1126300_1126807_+	antirestriction protein ArdA	NA	NA	NA	NA
WP_013961032.1\|1126818_1127235_+	hypothetical protein	NA	NA	NA	NA
WP_013961033.1\|1127267_1127588_-	hypothetical protein	NA	NA	NA	NA
WP_085977359.1\|1127678_1128774_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.0e-53	42.7
WP_013961036.1\|1128777_1129437_-	DUF4935 domain-containing protein	NA	NA	NA	NA
1129371:1129397	attL	NA	NA	NA	NA
WP_013961037.1\|1129514_1130753_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013961038.1\|1130749_1132114_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_044025218.1\|1132107_1133109_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	3.7e-05	37.6
WP_013961040.1\|1133193_1133436_-	DUF4935 domain-containing protein	NA	NA	NA	NA
1133176:1133202	attR	NA	NA	NA	NA
WP_013961042.1\|1133987_1134302_-	hypothetical protein	NA	NA	NA	NA
WP_013961043.1\|1134411_1135071_-	hypothetical protein	NA	NA	NA	NA
WP_013961044.1\|1135285_1136584_-	relaxase/mobilization nuclease-like protein	NA	NA	NA	NA
WP_013961045.1\|1136590_1137019_-	hypothetical protein	NA	NA	NA	NA
WP_013961046.1\|1137304_1137601_-	hypothetical protein	NA	NA	NA	NA
WP_013961047.1\|1138026_1140735_+	calcium-binding protein	NA	NA	NA	NA
WP_013961048.1\|1140959_1141949_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013961049.1\|1142137_1143532_+	amidohydrolase family protein	NA	NA	NA	NA
WP_013961050.1\|1143616_1144384_+	DUF3299 domain-containing protein	NA	NA	NA	NA
WP_013961051.1\|1144380_1145274_+	hypothetical protein	NA	NA	NA	NA
WP_013961052.1\|1145283_1146465_+	carbohydrate porin	NA	NA	NA	NA
WP_013961053.1\|1146624_1147755_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_148264311.1\|1147805_1149119_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_044025221.1\|1151407_1152907_+	phospholipase D family protein	NA	NA	NA	NA
WP_158308139.1\|1153227_1153392_-	hypothetical protein	NA	NA	NA	NA
WP_013961059.1\|1153909_1155721_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.0e-58	31.0
WP_013961060.1\|1155835_1157719_+	acyl-CoA synthetase	A0A2H4PQM9	Staphylococcus_phage	9.8e-23	26.8
WP_013961061.1\|1157775_1158612_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_013961062.1\|1158853_1160491_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.7e-21	33.2
WP_013961063.1\|1160487_1161300_-	ABC transporter permease	NA	NA	NA	NA
WP_013961064.1\|1161296_1162253_-	ABC transporter permease	NA	NA	NA	NA
WP_013961065.1\|1162266_1163862_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013961066.1\|1163979_1165971_-	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_044025223.1\|1166024_1167137_-	DUF4147 domain-containing protein	NA	NA	NA	NA
WP_013961068.1\|1167167_1167614_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_013961069.1\|1167657_1168764_-	TFIIB-type zinc finger domain-containing protein	NA	NA	NA	NA
WP_013961070.1\|1168760_1169186_-	hypothetical protein	NA	NA	NA	NA
WP_013961071.1\|1169273_1170410_-	SPFH domain-containing protein	NA	NA	NA	NA
WP_169315065.1\|1170437_1171430_-	DUF2927 domain-containing protein	NA	NA	NA	NA
WP_013961073.1\|1171389_1172586_-	toxic anion resistance protein	NA	NA	NA	NA
WP_013961074.1\|1172619_1173504_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1440144 : 1445811

Geobacillus_phage(33.33%)

portal,tail,capsid,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013961336.1\|1440144_1441323_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.4e-59	36.9
WP_013961337.1\|1441315_1441537_+	hypothetical protein	NA	NA	NA	NA
WP_013961338.1\|1441571_1442129_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.2e-32	53.5
WP_013961339.1\|1442195_1443374_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	3.2e-64	37.4
WP_013961340.1\|1443532_1444126_+	hypothetical protein	NA	NA	NA	NA
WP_013961341.1\|1444122_1444461_+\|head	phage head closure protein	NA	NA	NA	NA
WP_013961342.1\|1444457_1444868_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013961343.1\|1444896_1445310_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_013961344.1\|1445311_1445629_+	gene transfer agent family protein	NA	NA	NA	NA
WP_148264319.1\|1445625_1445811_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA

DBSCAN-SWA_3

3650066 : 3770178

100

Tupanvirus(13.33%)

transposase,integrase,tail,protease,tRNA

attL 3708806:3708822|attR 3749185:3749201

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013963424.1\|3650066_3650753_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013963425.1\|3650833_3651847_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_013963426.1\|3651971_3653072_+	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	4.5e-36	33.3
WP_013963427.1\|3653086_3653665_+	nitroreductase	NA	NA	NA	NA
WP_013963428.1\|3653661_3654381_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_013963429.1\|3654316_3654613_-	DUF1467 family protein	NA	NA	NA	NA
WP_013963430.1\|3654636_3655041_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_013963431.1\|3655528_3656248_+	response regulator	NA	NA	NA	NA
WP_013963432.1\|3656259_3656982_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013963433.1\|3657037_3658813_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_044025413.1\|3659170_3659800_-	hypothetical protein	NA	NA	NA	NA
WP_013963436.1\|3660012_3660390_+	hypothetical protein	NA	NA	NA	NA
WP_013963437.1\|3660386_3661448_+	ferric reductase-like transmembrane domain-containing protein	NA	NA	NA	NA
WP_148264499.1\|3661528_3662209_+	hypothetical protein	NA	NA	NA	NA
WP_013963440.1\|3662933_3665930_+	calcium-binding protein	NA	NA	NA	NA
WP_013963441.1\|3666139_3666367_-	hypothetical protein	NA	NA	NA	NA
WP_044025723.1\|3666460_3667375_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_148264500.1\|3667612_3669988_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-10	56.3
WP_013963444.1\|3671989_3672295_+	hypothetical protein	NA	NA	NA	NA
WP_013963445.1\|3672381_3672624_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_148264393.1\|3672620_3673034_+	PIN domain-containing protein	NA	NA	NA	NA
WP_013963447.1\|3673376_3673748_+	GFA family protein	NA	NA	NA	NA
WP_013963448.1\|3673987_3675346_-\|transposase	ISKra4-like element ISRli1 family transposase	NA	NA	NA	NA
WP_013963449.1\|3675531_3676164_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_148264501.1\|3676497_3677520_+	autoinducer binding domain-containing protein	NA	NA	NA	NA
WP_158308131.1\|3678244_3678409_+	hypothetical protein	NA	NA	NA	NA
WP_013960335.1\|3678401_3680486_+	recombinase family protein	NA	NA	NA	NA
WP_158308166.1\|3680465_3681410_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_013963452.1\|3681678_3681864_-	hypothetical protein	NA	NA	NA	NA
WP_013963453.1\|3682418_3683798_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_083825480.1\|3684940_3685243_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013960335.1\|3687043_3689128_-	recombinase family protein	NA	NA	NA	NA
WP_158308131.1\|3689120_3689285_-	hypothetical protein	NA	NA	NA	NA
WP_148264394.1\|3690647_3693191_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_158308131.1\|3693903_3694068_+	hypothetical protein	NA	NA	NA	NA
WP_013960335.1\|3694060_3696145_+	recombinase family protein	NA	NA	NA	NA
WP_158308166.1\|3696124_3697069_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_013963460.1\|3697331_3698150_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.8e-51	43.3
WP_044025415.1\|3700174_3701137_-	autoinducer binding domain-containing protein	NA	NA	NA	NA
WP_148264395.1\|3701472_3701805_+	hypothetical protein	NA	NA	NA	NA
WP_013963463.1\|3703535_3703820_-	hypothetical protein	NA	NA	NA	NA
WP_158308167.1\|3703776_3703938_+	hypothetical protein	NA	NA	NA	NA
WP_013963464.1\|3705816_3705966_+	hypothetical protein	NA	NA	NA	NA
WP_083825511.1\|3706008_3706311_-\|transposase	transposase	NA	NA	NA	NA
WP_148264396.1\|3706419_3707548_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.9e-14	26.6
WP_013963469.1\|3708702_3709347_-	autoinducer synthetase-like protein	NA	NA	NA	NA
3708806:3708822	attL	NA	NA	NA	NA
WP_013963470.1\|3709724_3710864_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083825482.1\|3711415_3712582_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0YZU7	Pseudomonas_phage	2.6e-05	41.2
WP_044025218.1\|3712575_3713577_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	3.7e-05	37.6
WP_013963471.1\|3713704_3713935_+	hypothetical protein	NA	NA	NA	NA
WP_013963472.1\|3714046_3714226_-	hypothetical protein	NA	NA	NA	NA
WP_013963473.1\|3714282_3714468_-	hypothetical protein	NA	NA	NA	NA
WP_044025419.1\|3714918_3715107_-	hypothetical protein	NA	NA	NA	NA
WP_013963475.1\|3715193_3715499_-	hypothetical protein	NA	NA	NA	NA
WP_083825483.1\|3715649_3716258_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	1.7e-13	31.2
WP_013963479.1\|3719788_3720325_-	DnaJ domain-containing protein	NA	NA	NA	NA
WP_013963481.1\|3720727_3722017_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.3e-98	51.9
WP_044025732.1\|3722057_3723029_-	D-glycerate dehydrogenase	M1HBE3	Paramecium_bursaria_Chlorella_virus	1.9e-22	29.1
WP_013963483.1\|3723028_3723916_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_013963484.1\|3723912_3725112_-	malate--CoA ligase subunit beta	NA	NA	NA	NA
WP_013963485.1\|3725145_3726384_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_044025733.1\|3726632_3727256_+	response regulator transcription factor	NA	NA	NA	NA
WP_013963487.1\|3727336_3728314_+	CoA ester lyase	NA	NA	NA	NA
WP_158308168.1\|3728282_3728486_+	hypothetical protein	NA	NA	NA	NA
WP_013963489.1\|3728715_3729435_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-16	26.3
WP_013963490.1\|3729431_3730223_+	ABC transporter permease	NA	NA	NA	NA
WP_013963492.1\|3730614_3732210_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_013963493.1\|3732220_3732901_+	response regulator transcription factor	NA	NA	NA	NA
WP_011567425.1\|3732997_3733105_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
WP_013963494.1\|3733129_3734023_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
WP_013963495.1\|3734024_3734774_+	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA
WP_013963496.1\|3734775_3735051_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA
WP_013963497.1\|3735047_3736154_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
WP_044025734.1\|3736217_3737054_+	hypothetical protein	NA	NA	NA	NA
WP_148264503.1\|3737946_3739530_-	amidohydrolase family protein	NA	NA	NA	NA
WP_083825485.1\|3739664_3741296_-	amidohydrolase family protein	NA	NA	NA	NA
WP_148264504.1\|3741429_3742428_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013963502.1\|3742778_3743135_+	hypothetical protein	NA	NA	NA	NA
WP_148264397.1\|3743109_3744387_+	hypothetical protein	NA	NA	NA	NA
WP_013963504.1\|3744718_3745837_-	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	4.1e-45	34.5
WP_148264398.1\|3747869_3748049_-	hypothetical protein	NA	NA	NA	NA
WP_158308169.1\|3748258_3748408_-	hypothetical protein	NA	NA	NA	NA
WP_013963506.1\|3749186_3749579_+	hypothetical protein	NA	NA	NA	NA
3749185:3749201	attR	NA	NA	NA	NA
WP_013963507.1\|3749661_3750954_-	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	5.9e-128	53.1
WP_013963508.1\|3750946_3751555_-	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L2K0	Tupanvirus	1.4e-23	36.4
WP_013963509.1\|3751673_3752564_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_013963510.1\|3752753_3753593_+	OmpA family protein	NA	NA	NA	NA
WP_013963511.1\|3753693_3755004_+	flagellar hook-basal body complex protein	NA	NA	NA	NA
WP_013963512.1\|3755047_3756493_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_013963513.1\|3756496_3757501_+	flagellar hook protein	NA	NA	NA	NA
WP_013963514.1\|3757497_3758601_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
WP_044025737.1\|3759572_3761636_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	3.7e-15	34.2
WP_013963517.1\|3761828_3762482_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_013963518.1\|3762846_3764142_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_044025424.1\|3764138_3764948_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_148264505.1\|3765556_3766093_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_013963521.1\|3766092_3766830_+	hypothetical protein	NA	NA	NA	NA
WP_013963522.1\|3766845_3769233_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4N7L3	Lake_Baikal_phage	7.8e-09	28.4
WP_013963523.1\|3769258_3769717_+\|tail	phage tail protein	NA	NA	NA	NA
WP_013963524.1\|3769722_3770178_+\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015729

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14344 : 22440

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013959942.1\|14344_15235_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.2e-93	58.5
WP_013959943.1\|15248_16094_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.3e-37	41.7
WP_044025838.1\|16090_17167_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	2.5e-87	48.6
WP_013959945.1\|17171_17735_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.5e-35	44.0
WP_013959946.1\|17952_18936_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	8.7e-39	31.2
WP_013959949.1\|20727_22440_+	bifunctional sulfate adenylyltransferase/adenylylsulfate kinase	A0A2P1ELS9	Moumouvirus	3.3e-118	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015730

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015729

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection