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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_022112 Lactobacillus paracasei subsp. paracasei 8700:2, complete sequence 4 crisprs DinG,WYL,DEDDh,csa3,cas3,RT,csn2,cas2,cas1,cas9 0 9 7 0
NC_022123 Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 2, complete sequence 0 crisprs NA 0 0 0 0
NC_022114 Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence 1 crisprs NA 0 1 0 0

Results visualization

1. NC_022112
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022112_1 265694-265838 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022112_2 638198-638313 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022112_3 1823765-1823885 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022112_4 2192491-2193845 TypeII NA
20 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022112_4 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193780-2193809 30 NZ_CP022955 Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence 89-118 0 1.0
NC_022112_4 4.17|2193583|29|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193583-2193611 29 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 337684-337712 6 0.793
NC_022112_4 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193648-2193677 30 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 787988-788017 6 0.8
NC_022112_4 4.10|2193121|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193121-2193150 30 NZ_CP049251 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed4, complete sequence 110306-110335 7 0.767
NC_022112_4 4.15|2193451|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193451-2193480 30 NZ_CP018229 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence 347900-347929 7 0.767
NC_022112_4 4.15|2193451|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193451-2193480 30 NZ_CP016290 Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence 472321-472350 7 0.767
NC_022112_4 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193648-2193677 30 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 170192-170221 7 0.767
NC_022112_4 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193648-2193677 30 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1643071-1643100 7 0.767
NC_022112_4 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193648-2193677 30 MG757157 Gordonia phage Flapper, complete genome 3335-3364 7 0.767
NC_022112_4 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193780-2193809 30 KY290955 Aeromonas phage 65.2, complete genome 93969-93998 7 0.767
NC_022112_4 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193780-2193809 30 NC_015251 Aeromonas phage 65, complete genome 93984-94013 7 0.767
NC_022112_4 4.1|2192527|30|NC_022112|CRISPRCasFinder,CRT 2192527-2192556 30 NZ_CP016024 Ralstonia insidiosa strain ATCC 49129 plasmid pRI-1, complete sequence 227967-227996 8 0.733
NC_022112_4 4.9|2193055|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193055-2193084 30 NZ_CP034227 Lactobacillus agilis strain La3 plasmid pLa3_2, complete sequence 3216-3245 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MN497953 Mycobacterium phage GtownJaz, complete genome 25204-25233 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MG925341 Mycobacteriophage EpicPhail, complete genome 25203-25232 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KX808129 Mycobacterium phage Sabinator, complete genome 25201-25230 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MK359341 Mycobacterium phage GingkoMaracino, complete genome 25089-25118 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 JF704114 Mycobacterium phage Vix, complete genome 25285-25314 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MK279913 Mycobacterium phage PotatoSplit, complete genome 25203-25232 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MG757161 Mycobacterium phage LugYA, complete genome 25203-25232 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH536825 Mycobacterium phage Ollie, complete genome 25073-25102 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH020238 Mycobacterium phage Lilith, complete genome 25196-25225 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH077583 Mycobacterium phage PGHhamlin, complete genome 25195-25224 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH155864 Mycobacterium phage Beauxregard13, complete genome 25203-25232 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH727554 Mycobacterium phage MuchMore, complete genome 25195-25224 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH338240 Mycobacterium phage Sabia, complete genome 25196-25225 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MN813699 Mycobacterium phage P28Green, complete genome 25204-25233 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KM233455 Mycobacterium phage Farber, complete genome 25196-25225 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 HM755814 Mycobacterium phage Wonder, complete genome 24652-24681 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KU578077 Mycobacterium phage Marie, complete genome 25202-25231 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KT381277 Mycobacterium phage Wooldri, complete genome 25114-25143 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MK875800 Mycobacterium phage MoneyMay, complete genome 25202-25231 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KX664448 Mycobacterium phage Watson, complete genome 25195-25224 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KX507362 Mycobacterium phage Aglet, complete genome 25204-25233 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MN586048 Mycobacterium phage Fernando, complete genome 25202-25231 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KU985091 Mycobacterium phage Hercules11, complete genome 25210-25239 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 NC_042310 Mycobacterium virus JHC117, complete genome 25201-25230 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH576949 Mycobacterium phage BreSam8, complete genome 25196-25225 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KP027202 Mycobacterium phage Taurus, complete genome 25202-25231 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH399776 Mycobacterium phage Grum1, complete genome 25202-25231 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MN585969 Mycobacterium phage Dieselweasel, complete genome 25204-25233 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KU255188 Mycobacterium phage JenCasNa, complete genome 25202-25231 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KX458237 Mycobacterium phage Penny1, complete genome 25203-25232 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH536813 Mycobacterium phage AugsMagnumOpus, complete genome 25195-25224 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MF185733 Mycobacterium phage StepMih, complete genome 25196-25225 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MF185732 Mycobacterium phage Stagni, complete genome 25205-25234 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MK494096 Mycobacterium phage Mainiac, complete genome 25196-25225 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KU984914 Mycobacterium phage Malinsilva, complete genome 25195-25224 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 JF704101 Mycobacterium virus Microwolf, complete genome 25204-25233 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KT359365 Mycobacterium phage DaHudson, complete genome 25195-25224 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 MH651179 Mycobacterium phage MadMarie, complete genome 25205-25234 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 KF279418 Mycobacterium phage Anubis, complete genome 25089-25118 8 0.733
NC_022112_4 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193187-2193216 30 NC_028798 Mycobacterium phage MarQuardt, complete genome 25204-25233 8 0.733
NC_022112_4 4.13|2193319|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193319-2193348 30 KY653117 Staphylococcus phage IME1323_01, complete genome 20139-20168 9 0.7
NC_022112_4 4.15|2193451|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193451-2193480 30 NC_021920 Corynebacterium maris DSM 45190 plasmid pCmaris1, complete sequence 44607-44636 9 0.7
NC_022112_4 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193780-2193809 30 NZ_LR699117 Aquicella lusitana strain SGT-39 plasmid 4 51940-51969 9 0.7
NC_022112_4 4.9|2193055|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR 2193055-2193084 30 MN693950 Marine virus AFVG_250M300, complete genome 1356-1385 10 0.667

1. spacer 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022955 (Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence) position: , mismatch: 0, identity: 1.0

tttctttcacttttacttcaatcgctagac	CRISPR spacer
tttctttcacttttacttcaatcgctagac	Protospacer
******************************

2. spacer 4.17|2193583|29|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gtgatgcaggctgtatgatttttttgtat	CRISPR spacer
gttgcgctggctgtattatttttttgtaa	Protospacer
** ..** ******** *********** 

3. spacer 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 6, identity: 0.8

tgtgccgcatgttgaatccgtgccgactcg	CRISPR spacer
cgtgccgcatgttgaaccagtgccggattg	Protospacer
.***************.* ******. *.*

4. spacer 4.10|2193121|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049251 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

cgtgggcgatcaaagatggcggcgaaaggg	CRISPR spacer
agatggcgatgaacgatggcggcgaaaatg	Protospacer
 *  ****** ** *************. *

5. spacer 4.15|2193451|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttagcttgaatgaggttcgcgaacgtttag	CRISPR spacer
ttagcctgaatgatgttcgcgaagtcgaag	Protospacer
*****.******* *********  .  **

6. spacer 4.15|2193451|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ttagcttgaatgaggttcgcgaacgtttag	CRISPR spacer
ttagcctgaatgatgttcgcgaagtcgaag	Protospacer
*****.******* *********  .  **

7. spacer 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

tgtgccgcatgttgaatccgtgccgactcg	CRISPR spacer
cgtgccgcatgtcgaatccgcgccccgtgg	Protospacer
.***********.*******.***   * *

8. spacer 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

tgtgccgcatgttgaatccgtgccgactcg	CRISPR spacer
cgtgccgcatgtcgaatccgcgccccgtgg	Protospacer
.***********.*******.***   * *

9. spacer 4.18|2193648|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MG757157 (Gordonia phage Flapper, complete genome) position: , mismatch: 7, identity: 0.767

tgtgccgcatgttgaatccgtgccgactcg	CRISPR spacer
cgacccgcacgttgaatccgtaccgacatg	Protospacer
.*  *****.***********.***** .*

10. spacer 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 7, identity: 0.767

tttctttcacttttacttcaatcgctagac	CRISPR spacer
tttctttcatttttacttccatcagcaaat	Protospacer
*********.********* ***. .*.*.

11. spacer 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 7, identity: 0.767

tttctttcacttttacttcaatcgctagac	CRISPR spacer
tttctttcatttttacttccatcagcaaat	Protospacer
*********.********* ***. .*.*.

12. spacer 4.1|2192527|30|NC_022112|CRISPRCasFinder,CRT matches to NZ_CP016024 (Ralstonia insidiosa strain ATCC 49129 plasmid pRI-1, complete sequence) position: , mismatch: 8, identity: 0.733

cgcatatcactgagcatgtgcgagatcgtc	CRISPR spacer
cccataccactgagcatgtgcgaaaaacgg	Protospacer
* ****.****************.*     

13. spacer 4.9|2193055|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034227 (Lactobacillus agilis strain La3 plasmid pLa3_2, complete sequence) position: , mismatch: 8, identity: 0.733

aaggggcgtctttctttatatcatcggctt	CRISPR spacer
taggggcgtctttttttatatccgctcata	Protospacer
 ************.********  *   * 

14. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MN497953 (Mycobacterium phage GtownJaz, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

15. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MG925341 (Mycobacteriophage EpicPhail, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

16. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KX808129 (Mycobacterium phage Sabinator, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

17. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MK359341 (Mycobacterium phage GingkoMaracino, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

18. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to JF704114 (Mycobacterium phage Vix, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

19. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MK279913 (Mycobacterium phage PotatoSplit, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

20. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MG757161 (Mycobacterium phage LugYA, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

21. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH536825 (Mycobacterium phage Ollie, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

22. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH020238 (Mycobacterium phage Lilith, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

23. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH077583 (Mycobacterium phage PGHhamlin, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

24. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH155864 (Mycobacterium phage Beauxregard13, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

25. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH727554 (Mycobacterium phage MuchMore, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

26. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH338240 (Mycobacterium phage Sabia, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

27. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MN813699 (Mycobacterium phage P28Green, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

28. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KM233455 (Mycobacterium phage Farber, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

29. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to HM755814 (Mycobacterium phage Wonder, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

30. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KU578077 (Mycobacterium phage Marie, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

31. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KT381277 (Mycobacterium phage Wooldri, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

32. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MK875800 (Mycobacterium phage MoneyMay, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

33. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KX664448 (Mycobacterium phage Watson, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

34. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KX507362 (Mycobacterium phage Aglet, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

35. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MN586048 (Mycobacterium phage Fernando, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

36. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KU985091 (Mycobacterium phage Hercules11, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

37. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NC_042310 (Mycobacterium virus JHC117, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

38. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH576949 (Mycobacterium phage BreSam8, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

39. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KP027202 (Mycobacterium phage Taurus, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

40. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH399776 (Mycobacterium phage Grum1, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

41. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MN585969 (Mycobacterium phage Dieselweasel, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

42. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KU255188 (Mycobacterium phage JenCasNa, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

43. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KX458237 (Mycobacterium phage Penny1, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

44. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH536813 (Mycobacterium phage AugsMagnumOpus, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

45. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MF185733 (Mycobacterium phage StepMih, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

46. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MF185732 (Mycobacterium phage Stagni, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

47. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MK494096 (Mycobacterium phage Mainiac, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

48. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KU984914 (Mycobacterium phage Malinsilva, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

49. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to JF704101 (Mycobacterium virus Microwolf, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

50. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KT359365 (Mycobacterium phage DaHudson, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

51. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MH651179 (Mycobacterium phage MadMarie, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

52. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KF279418 (Mycobacterium phage Anubis, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

53. spacer 4.11|2193187|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NC_028798 (Mycobacterium phage MarQuardt, complete genome) position: , mismatch: 8, identity: 0.733

ggcgtgtccaagcgttcggcgtccagttct	CRISPR spacer
atcgcgtcgaagcgttcggcgtccaacagt	Protospacer
. **.*** ****************..  *

54. spacer 4.13|2193319|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to KY653117 (Staphylococcus phage IME1323_01, complete genome) position: , mismatch: 9, identity: 0.7

cggggcaacatccacatctaagtctaacac	CRISPR spacer
tttggctacatcctcatctaagtctacatt	Protospacer
.  *** ****** ************   .

55. spacer 4.15|2193451|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NC_021920 (Corynebacterium maris DSM 45190 plasmid pCmaris1, complete sequence) position: , mismatch: 9, identity: 0.7

ttagcttgaatgaggttcgcgaacgtttag	CRISPR spacer
gaagctcgagtgaggttcgcgaacgcggct	Protospacer
  ****.**.***************.    

56. spacer 4.20|2193780|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR699117 (Aquicella lusitana strain SGT-39 plasmid 4) position: , mismatch: 9, identity: 0.7

tttctttcacttttacttcaatcgctagac	CRISPR spacer
attcttccacttttacttcaatcttcttga	Protospacer
 *****.**************** ..  . 

57. spacer 4.9|2193055|30|NC_022112|CRISPRCasFinder,CRT,PILER-CR matches to MN693950 (Marine virus AFVG_250M300, complete genome) position: , mismatch: 10, identity: 0.667

aaggggcgtctttctttatatcatcggctt	CRISPR spacer
cttctttttctttctttttatcatcggctg	Protospacer
      . ********* *********** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 17786 : 65643 48 Pithovirus(25.0%) bacteriocin,protease,holin NA
DBSCAN-SWA_2 807493 : 848471 49 Lactobacillus_phage(95.24%) protease,integrase,tRNA,capsid,head,holin,tail,terminase,portal attL 795682:795696|attR 816706:816720
DBSCAN-SWA_3 919653 : 928912 8 Streptococcus_phage(33.33%) integrase attL 912482:912495|attR 929352:929365
DBSCAN-SWA_4 983377 : 1031507 70 Lactobacillus_phage(85.71%) integrase,capsid,head,holin,tail,terminase,portal attL 978140:978154|attR 984772:984786
DBSCAN-SWA_5 1545479 : 1633693 97 Lactobacillus_phage(59.57%) protease,integrase,tRNA,terminase,capsid,head,holin,tail,portal attL 1585268:1585283|attR 1624732:1624747
DBSCAN-SWA_6 2324019 : 2385630 58 Bacillus_phage(20.0%) bacteriocin,protease NA
DBSCAN-SWA_7 2890329 : 2902825 18 Lactobacillus_phage(40.0%) integrase,capsid,head,tail,terminase,portal attL 2890213:2890232|attR 2904856:2904875
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_022114
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_022114_1 542-698 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NZ_CP014927 Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence 35518-35600 23 0.723
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NZ_CP014928 Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence 27242-27324 23 0.723
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NZ_CP014932 Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence 38859-38941 23 0.723
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NZ_CP014918 Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence 5543-5625 23 0.723
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NC_022114 Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence 579-661 23 0.723
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NZ_CP019324 Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence 27857-27939 23 0.723
NC_022114_1 1.1|579|83|NC_022114|CRISPRCasFinder 579-661 83 NZ_CP031201 Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence 6996-7078 24 0.711

1. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NZ_CP014927 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

2. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

3. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NZ_CP014932 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

4. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NZ_CP014918 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

5. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NC_022114 (Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

6. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NZ_CP019324 (Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

7. spacer 1.1|579|83|NC_022114|CRISPRCasFinder matches to NZ_CP031201 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence) position: , mismatch: 24, identity: 0.711

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaatcccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
******************* ****************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage