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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046035 Pseudomonas coronafaciens pv. oryzae str. 1_6 chromosome, complete genome 1 crisprs DEDDh,csa3,DinG,cas3,PD-DExK 0 1 5 0
NZ_CP046036 Pseudomonas coronafaciens pv. oryzae str. 1_6 plasmid pPor1_6, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP046035
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046035_1 4357385-4357467 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 MG592546 Vibrio phage 1.179.O._10N.286.45.F12, partial genome 2883-2907 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 MG592620 Vibrio phage 1.254.O._10N.286.45.C8, partial genome 2858-2882 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 MG592623 Vibrio phage 1.257.O._10N.286.46.A4, partial genome 2874-2898 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 NZ_CP013600 Rhizobium sp. N741 plasmid pRspN741e, complete sequence 12010-12034 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 NZ_CP013504 Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence 12010-12034 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 NZ_CP013510 Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence 12010-12034 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 NZ_CP013521 Rhizobium sp. N113 plasmid pRspN113d, complete sequence 12010-12034 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 NZ_CP013494 Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence 12010-12034 4 0.84
NZ_CP046035_1 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder 4357414-4357438 25 NZ_CP013594 Rhizobium sp. N871 plasmid pRspN871d, complete sequence 12010-12034 4 0.84

1. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to MG592546 (Vibrio phage 1.179.O._10N.286.45.F12, partial genome) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
ttatgcagcgcttcaagaaagccaa	Protospacer
. *************.******** 

2. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to MG592620 (Vibrio phage 1.254.O._10N.286.45.C8, partial genome) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
ttatgcagcgcttcaagaaagccaa	Protospacer
. *************.******** 

3. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to MG592623 (Vibrio phage 1.257.O._10N.286.46.A4, partial genome) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
ttatgcagcgcttcaagaaagccaa	Protospacer
. *************.******** 

4. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
tcatgcggcgcttcaggaaagcgac	Protospacer
. ****.*************** **

5. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
tcatgcggcgcttcaggaaagcgac	Protospacer
. ****.*************** **

6. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
tcatgcggcgcttcaggaaagcgac	Protospacer
. ****.*************** **

7. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
tcatgcggcgcttcaggaaagcgac	Protospacer
. ****.*************** **

8. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
tcatgcggcgcttcaggaaagcgac	Protospacer
. ****.*************** **

9. spacer 1.1|4357414|25|NZ_CP046035|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 4, identity: 0.84

caatgcagcgcttcaggaaagccac	CRISPR spacer
tcatgcggcgcttcaggaaagcgac	Protospacer
. ****.*************** **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2177619 : 2228538 68 Pseudomonas_phage(70.21%) capsid,portal,head,protease,terminase,tail,integrase attL 2166957:2166972|attR 2229633:2229648
DBSCAN-SWA_2 3204543 : 3215978 12 uncultured_Caudovirales_phage(62.5%) tRNA NA
DBSCAN-SWA_3 4882412 : 4956320 90 uncultured_Caudovirales_phage(47.27%) capsid,holin,portal,lysis,head,bacteriocin,protease,terminase,tail,plate,tRNA,integrase attL 4897126:4897142|attR 4937963:4937979
DBSCAN-SWA_4 5085017 : 5138551 52 Bacteriophage(18.75%) tRNA,holin,protease NA
DBSCAN-SWA_5 5296249 : 5345624 40 Paramecium_bursaria_Chlorella_virus(22.22%) protease,integrase,plate attL 5296135:5296167|attR 5303597:5303629
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage