CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007063	Fusobacterium nucleatum subsp. animalis 7_1 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP007062	Fusobacterium nucleatum subsp. animalis 7_1 chromosome, complete genome	7 crisprs	cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cas14j,csa3,WYL,PD-DExK,cas14k,DinG,DEDDh	2	11	4	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007062_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_1

175445-176728

TypeI-B

Consensus_repeat	Method
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	PILER-CR
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CRISPRCasFinder
ATGAACTANAAACTTGAAAAGTTTTGAAAT	CRT

19 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NZ_CP007062_1

>merge|NZ_CP007062|1|175445-176728|PILER-CR,CRISPRCasFinder,CRT
ATGAACTATAAACTTGAAAAGTTTTGAAATATCTCCACAGGTTTTTTAATGTATTTCTTAATCATATGAACTATAAACTTGAAAAGTTTTGAAATAAGAAATTAGGATAATTATATTTTCCACCTTTTTTATGAACTATAAACTTGAAAAGTTTTGAAATATTCCACTCCTTACCTATTCTTTTCATATTCTTTTGATGAACTATAAACTTGAAAAGTTTTGAAATCTGGTAAAGATTATGCTTGTATAAATGGAGAACTTACATGAACTATAAACTTGAAAAGTTTTGAAATTATAGCAGAATGTGTGGAGTTCAATGAAGAAACAAAATGAACTATAAACTTGAAAAGTTTTGAAATATCCTGTATGATAAGACTTACTGCTTCCATATCCTCATGAACTAAAAACTTGAAAAGTTTTGAAATCCACTTGTGCTATTTTCTGATTTACTACTTTGAGTAATGAACTAAAAACTTGAAAAGTTTTGAAATGTTAATACAACAAAAGGAGTATCTGTAAAAGACTCAATGAACTAAAAACTTGAAAAGTTTTGAAATTCTTTATATAGTAAAGAAGATAAAAAAGGAGCAGAAATGAACTAAAAACTTGAAAAGTTTTGAAATATAGGTACTTCAACACTTCCAGCAGCAGATATTATTATGAACTAAAAACTTGAAAAGTTTTGAAATCTCAGAAGCAAGAAAATTAGCTTTTGAAATATAAAATGAACTAAAAACTTGAAAAGTTTTGAAATGCTAACCACTTCTCACCACTTTCTACACTACCTTTTATGAACTAAAAACTTGAAAAGTTTTGAAATTCAGTTAAAGTTCTCCAACTTTTAAAGACTTCTTTAATGAACTAAAAACTTGAAAAGTTTTGAAATGCTAACCACTTCTCACCACTTTCTACACTACCTTTTATGAACTAAAAACTTGAAAAGTTTTGAAATATCTTTGGAATTTCTTTGGATAGAGCTGAGTGGTATTATGAACTAAAAACTTGAAAAGTTTTGAAATTCATAAACTGTTACATATAACAAGCCTTCACTTCCATGAACTATAAACTTGAAAAGTTTTGAAATATTGTTCTAGTATATTTTATATTAATTCTTATATTGCATGAACTAAAAACTTGAAAAGTTTTGAAATGGCTGTGTAGATGATATATTTGTTCTAAAATCTTTAAATGAACTGTAAACTTGAAAAGTTTTGAAATAAAAATAGAATATTTTTAAACTTTCTAAAAATACTCATGAACTATAAACTTAAAAAATTTTGTTGT

>NZ_CP007062|1|1|175445-176662|PILER-CR
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATCTCCACAGGTTTTTTAATGTATTTCTTAATCAT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	AAGAAATTAGGATAATTATATTTTCCACCTTTTTT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATTCCACTCCTTACCTATTCTTTTCATATTCTTTTG
ATGAACTATAAACTTGAAAAGTTTTGAAAT	CTGGTAAAGATTATGCTTGTATAAATGGAGAACTTAC
ATGAACTATAAACTTGAAAAGTTTTGAAAT	TATAGCAGAATGTGTGGAGTTCAATGAAGAAACAAA
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATCCTGTATGATAAGACTTACTGCTTCCATATCCTC
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CCACTTGTGCTATTTTCTGATTTACTACTTTGAGTA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GTTAATACAACAAAAGGAGTATCTGTAAAAGACTCA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCTTTATATAGTAAAGAAGATAAAAAAGGAGCAGAA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	ATAGGTACTTCAACACTTCCAGCAGCAGATATTATT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CTCAGAAGCAAGAAAATTAGCTTTTGAAATATAAA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GCTAACCACTTCTCACCACTTTCTACACTACCTTTT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCAGTTAAAGTTCTCCAACTTTTAAAGACTTCTTTA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GCTAACCACTTCTCACCACTTTCTACACTACCTTTT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	ATCTTTGGAATTTCTTTGGATAGAGCTGAGTGGTATT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCATAAACTGTTACATATAACAAGCCTTCACTTCC
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATTGTTCTAGTATATTTTATATTAATTCTTATATTGC
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GGCTGTGTAGATGATATATTTGTTCTAAAATCTTTAA
ATGAACTGTAAACTTGAAAAGTTTTGAAAT

>NZ_CP007062|1|1|175445-176728|CRISPRCasFinder
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATCTCCACAGGTTTTTTAATGTATTTCTTAATCAT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	AAGAAATTAGGATAATTATATTTTCCACCTTTTTT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATTCCACTCCTTACCTATTCTTTTCATATTCTTTTG
ATGAACTATAAACTTGAAAAGTTTTGAAAT	CTGGTAAAGATTATGCTTGTATAAATGGAGAACTTAC
ATGAACTATAAACTTGAAAAGTTTTGAAAT	TATAGCAGAATGTGTGGAGTTCAATGAAGAAACAAA
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATCCTGTATGATAAGACTTACTGCTTCCATATCCTC
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CCACTTGTGCTATTTTCTGATTTACTACTTTGAGTA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GTTAATACAACAAAAGGAGTATCTGTAAAAGACTCA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCTTTATATAGTAAAGAAGATAAAAAAGGAGCAGAA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	ATAGGTACTTCAACACTTCCAGCAGCAGATATTATT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CTCAGAAGCAAGAAAATTAGCTTTTGAAATATAAA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GCTAACCACTTCTCACCACTTTCTACACTACCTTTT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCAGTTAAAGTTCTCCAACTTTTAAAGACTTCTTTA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GCTAACCACTTCTCACCACTTTCTACACTACCTTTT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	ATCTTTGGAATTTCTTTGGATAGAGCTGAGTGGTATT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCATAAACTGTTACATATAACAAGCCTTCACTTCC
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATTGTTCTAGTATATTTTATATTAATTCTTATATTGC
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GGCTGTGTAGATGATATATTTGTTCTAAAATCTTTAA
ATGAACTGTAAACTTGAAAAGTTTTGAAAT	AAAAATAGAATATTTTTAAACTTTCTAAAAATACTC
ATGAACTATAAACTTAAAAAATTTTGTTGT

>NZ_CP007062|1|1|175445-176728|CRT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATCTCCACAGGTTTTTTAATGTATTTCTTAATCAT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	AAGAAATTAGGATAATTATATTTTCCACCTTTTTT
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATTCCACTCCTTACCTATTCTTTTCATATTCTTTTG
ATGAACTATAAACTTGAAAAGTTTTGAAAT	CTGGTAAAGATTATGCTTGTATAAATGGAGAACTTAC
ATGAACTATAAACTTGAAAAGTTTTGAAAT	TATAGCAGAATGTGTGGAGTTCAATGAAGAAACAAA
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATCCTGTATGATAAGACTTACTGCTTCCATATCCTC
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CCACTTGTGCTATTTTCTGATTTACTACTTTGAGTA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GTTAATACAACAAAAGGAGTATCTGTAAAAGACTCA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCTTTATATAGTAAAGAAGATAAAAAAGGAGCAGAA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	ATAGGTACTTCAACACTTCCAGCAGCAGATATTATT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	CTCAGAAGCAAGAAAATTAGCTTTTGAAATATAAA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GCTAACCACTTCTCACCACTTTCTACACTACCTTTT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCAGTTAAAGTTCTCCAACTTTTAAAGACTTCTTTA
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GCTAACCACTTCTCACCACTTTCTACACTACCTTTT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	ATCTTTGGAATTTCTTTGGATAGAGCTGAGTGGTATT
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	TCATAAACTGTTACATATAACAAGCCTTCACTTCC
ATGAACTATAAACTTGAAAAGTTTTGAAAT	ATTGTTCTAGTATATTTTATATTAATTCTTATATTGC
ATGAACTAAAAACTTGAAAAGTTTTGAAAT	GGCTGTGTAGATGATATATTTGTTCTAAAATCTTTAA
ATGAACTGTAAACTTGAAAAGTTTTGAAAT	AAAAATAGAATATTTTTAAACTTTCTAAAAATACTC
ATGAACTATAAACTTAAAAAATTTTGTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_008701585.1\|190538_192323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702882.1\|177445_178180_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NZ_CP007062.1\|WP_008702885.1\|179558_180086_+\|macro-domain-containing-protein	unknown	unknown	gnl\|CDD\|394878
NZ_CP007062.1\|WP_008702871.1\|164133_164346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702879.1\|173470_173959_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP007062.1\|WP_016361155.1\|196116_196407_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702877.1\|170079_170850_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP007062.1\|WP_008702872.1\|164729_165767_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP007062.1\|WP_008702887.1\|181627_181987_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212142
NZ_CP007062.1\|WP_016361153.1\|170922_173460_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP007062.1\|WP_008701584.1\|192332_195734_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP007062.1\|WP_032843256.1\|169135_170077_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP007062.1\|WP_005904402.1\|176995_177250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702880.1\|173970_174969_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP007062.1\|WP_008702881.1\|174987_175272_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007062.1\|WP_008702884.1\|178185_179550_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_CP007062.1\|WP_008701587.1\|187829_190529_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350770
NZ_CP007062.1\|WP_008702886.1\|180229_181618_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238520
NZ_CP007062.1\|WP_008702875.1\|167402_169130_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NZ_CP007062.1\|WP_008702873.1\|166644_167388_+\|CRISPR-associated-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_008702885.1\|179558_180086_+\|macro-domain-containing-protein	gnl\|CDD\|394878	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacteylases may reverse cellular ADP-ribosylation.	7.56749e-84
NZ_CP007062.1\|WP_008702873.1\|166644_167388_+\|CRISPR-associated-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.68822e-07
NZ_CP007062.1\|WP_008702879.1\|173470_173959_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.56875e-53
NZ_CP007062.1\|WP_008702877.1\|170079_170850_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.79769e-51
NZ_CP007062.1\|WP_008702872.1\|164729_165767_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.87536e-09
NZ_CP007062.1\|WP_008702887.1\|181627_181987_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212142	cd11535, NTP-PPase_SsMazG, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Sulfolobus solfataricus (Ss) and its homologs from archaea and bacteria. This family includes a MazG-like protein from Sulfolobus solfataricus (SsMazG) and its homologs from archaea and bacteria. Although its biological roles remain still unclear, SsMazG shows significant sequence similarity to the NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, SsMazG contains a single MazG-like domain. It is predicted that SsMazG might participate in house-cleaning by preventing incorporation of the oxidation product 2-oxo-(d)ATP (iso-dGTP), a mutagenic derivative of ATP, into DNA.	3.9571e-23
NZ_CP007062.1\|WP_016361153.1\|170922_173460_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.85235e-31
NZ_CP007062.1\|WP_008701584.1\|192332_195734_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP007062.1\|WP_032843256.1\|169135_170077_+\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.42079e-44
NZ_CP007062.1\|WP_008702882.1\|177445_178180_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	7.102e-118
NZ_CP007062.1\|WP_008702880.1\|173970_174969_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.3966e-150
NZ_CP007062.1\|WP_008702881.1\|174987_175272_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.26586e-25
NZ_CP007062.1\|WP_008702884.1\|178185_179550_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	1.16922e-157
NZ_CP007062.1\|WP_008701587.1\|187829_190529_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350770	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins. Proteins belonging to SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprises a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. Archaeal SWI2 and SNF2 are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.26459e-108
NZ_CP007062.1\|WP_008702886.1\|180229_181618_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	5.43326e-100

>NZ_CP007062.1|WP_008702881.1|174987_175272_+|CRISPR-associated-endonuclease-Cas2
MKNINYNYAWVFYDVSEKRVNKVFKICKKYLSHFQKSVFRGDITPSKLISLRSELKSIIVGNEDFVCILKSISPDVFGEETLGNPTPNGENIFL
>NZ_CP007062.1|WP_008702880.1|173970_174969_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTKYITSMGELSRKDNSLCFRKNGKNIYIPIENTKEIYCLNEVSFNSKLLDFLGRNNIIVHFFNYYGGYSGSFYPRNQYNSGKLLVKQVEKYKNNRIDIAKAIVKGIGANIDEVLYHYYKHGKSEVKDCIDWIREDLYKLVDKTESVKELLAYEGEIWMKFYSMFQYFINEDFVLNKRVKRPPDNPINALISFGNTLLYTKTISAIYRTHLDQRISFLHEPSEGRFSLSLDISEVFKPIIVYKTIFDLVNNKRLQVAKHFEKSLNYCILNEEGRQIFIEAFENRIESTFLHTKLNRKISYRTAIKLDCYKLIKNILEDKEFISFSLKNSY
>NZ_CP007062.1|WP_008702879.1|173470_173959_+|CRISPR-associated-protein-Cas4
MNGTMINYYFHCKRQCYMFAHRLNLEDNSEIVKIGKAIHEDRARNSENTEIKIENIALDKINSKYVIEVKKSDADVEASKWQLLYYLKILKDKGIERKGKLEFIEKNKTDKKIVFVELDEDTERELEKHILEIEKLLEADELPKVINKASCKKCAYYEYCYI
>NZ_CP007062.1|WP_016361153.1|170922_173460_+|CRISPR-associated-helicase/endonuclease-Cas3
MTKFEDIFSFQDKYKYLAHIKDNRKETLQEHTELANKYFEKIVEYKNLKPFFERIKNILNLKNQEEELYYKMIDDVVNFHDFGKVNSQFQIDKMLNEEILKMEDKYNISGVLGSDHSLLSASMFIAYYFGKITDLIEMVETKKIVILLEILFALSYTISKHHGNLDSFEEYIEKLSRNNDENILKELKNISVSNGGILLRAFLEKENITIFFNFIETYISERKKKENISSQEAMSIFVFTKMMFSLLVASDYYSTNEFMQEIKYEDFGNMGNIDTIKKEYENSEIIKSIRDKEKNGIANDEDINNFRTKIFLEAEKNLEKNKEDNIFFLEAPTGSGKSNTALNLSLKLLDKDRRKIFYVYPFNTLVEQNMNTLKNIFGNNKEVIKNIAVVNSVTALTNKDSRDIPIEEYSDILMDRQFLNYPFIVTTHVGIFNSLVGNTKEDCMPFYQLANSVIVFDEIQAYKNTIWTEIIKILNSYAKLLNIKIIIMSATLPNLSYLLDEEEKNNISKLIENRDEYFNNTIFKNRVEVNYDLLSEQKIEYEELLKHITENSLNSQKILIEFISKNDAKKFYELCENNEDLNVDHEILILTGEDNKARRNFIIKKINSKDKKIILISTQLIEAGVDIDVDVGYKNISGLDNEEQFLGRINRSCKKSGKAYFFYLTDAKKVYKNSVIIENKLNLFSDEMRDVLENKNFDVFYSKVLEILKRKAKEKNNNDNFETIIFNKKFRLLKERMKLIEEQEDKKTYFFNRTLTDEEIEEIGENIDGSEVWERYVNILKEENYAKKIVELSKIREKMMYFLYEVKKNTELNYSDIKGSIIYIDDGDKYFTDGIYTGGEGDMFI
>NZ_CP007062.1|WP_008702877.1|170079_170850_+|type-I-B-CRISPR-associated-protein-Cas5
MKALKFTLSGNSAFFKDNVINTVYLTYGNIHRVALLGMLGAILGYGGYSKQNDMLKKKNKKMPDYPEFYEKLKDIKISIVSNGKNGYFNKKLQTFNNSVGYASKEEGGNLIVKQFWLENPSWDIYILLDCDEAKKIADYIQNRKAIYLPYLGSNDHLANIMDVEIIDIEEKMSSEDETIEILSMIKDSDISEKKKNVFSMDKNSTRDDIYKYSEYLPVALSKELNQYEKEKMTITNMSVVLKKSYYKVEDKNIVFY
>NZ_CP007062.1|WP_032843256.1|169135_170077_+|CRISPR-associated-protein
MEKRIYGILGISSIMSNWNADFSGEPKSISNGRIFGSDKAFKYPMKKMWENQGEKVLYIKSLKVDKGALIPKTLKERYEQLFPEKKLDKNIETIEVIKNLFKAIDVKNFGATFAEEGNNISITGAVQIGQGFNFYDESNTEVQDILSPFRDPKGKVNKETKENEDAKNSTLGTKIVSDEAHYFYPFNINPLAYKEFIELEITDGYTEEDYLKFKEAALSSATSFATNSKVGCDNEFGLFIETEEDFYLPILTQYVKFEKGEEKNKITLNLSTILKGVENHIKNIEIYYNPVTTEIVTDISNYKLINILTKKEV
>NZ_CP007062.1|WP_008702875.1|167402_169130_+|hypothetical-protein
MIDEALEVFKKIYDKEGEELVVSKHIPKDGTYILVNIKSGKIIEKLNIFYDKKSKKIDGELNQYYGYFRAFDYYSNLVDMNKPMDPKKTIHSNQIYSFFIKKDSIRENKLTKSIIEGYKKNLLNPEEKYNSKEGKELYKNIAEKLPKIEKDIVEDIFLWIEDNVNENLLENDNKKDYLKIFFVEEDLDKSLEVFKNEHKRYIIPNIFNSNDYNKKIGETIYGLSNNNMGLNAKKVFLENKTRRVSSPYLVDTDEILLQYAFYNYLLPEVKQGNYYIYFSENEITPRTYKEGCPNGAKYLLNASYSKDVDIKNFSVISKNSSEEININFKEILHQKKKDTDEIEYGNLNREKMMNNINKILFYNSLLGNFLLNDGDLDIKDIEVKKLLMKYRNSFYKWFYLNDEAEVKKNIRKIYLDAVMVAIGNGHFFKASQQLDFGFCLEKYFYGKSELMEEIMNVKEVFLNHTLSEEDWEFSNDEEYFFAVGQILAYINYMRNSKAKSLNFIKQLTFVKNIDVLKEKIKKIIISYSHIFETKNKKINRTISNISLYQPKEIRIDMLLAGFTADIIFFKKREEK
>NZ_CP007062.1|WP_008702873.1|166644_167388_+|CRISPR-associated-protein
MEVYEMKLKVKLKKDIFLKDVSTYITRFMDMSLSANPTMYSYHASKIYKGYTFDGLFPIEEDKIYKKDKIYSFRVRTISQKIANYFLDTLMFFENKDIQGLTLNIRVVEKKLIEKLYTITPILMKTDEGYWRYSMTFEEFEKRLKINCLKKYLYFTQKSDDITVDSELLKKLGEAKSDDLDLFSNIKFINRMPVPIIYKGRKLVGDKVELQVANNEKAQDIAYMLLGTGLLENCARGCGFLNFKNYE
>NZ_CP007062.1|WP_008702872.1|164729_165767_+|tetratricopeptide-repeat-protein
MDEKFWEQINTFGENGEFYKIVKEIKKLPEEKLNIELINALGRAYMNLGDYENALDTYLSYIGKNKEDVTNADIWIYSECGWLCNEVGDYERGLKYLLEAEKLGRDDEWLNTEVGQCLGRLGRAEEGIARLKKSLKLIETEAPENINEKIFINSEIGYLYGFLEIPEEALKYFYRTKDLGRNDEWLYVHLWFNLERFKGKEEALKYFENEVKDNDKNAALWASLGQVYMNFLENYEEAEKAFKKAFELSGDGLYLYNRGIALRMLGRYEEAIEILLQSRKISVQEGDVTDGEDSELVRCYVALKDKENARKYLESAKEGVKNIPEEHVNEFKNTLKELEDSIAKI
>NZ_CP007062.1|WP_008702871.1|164133_164346_+|hypothetical-protein
MNRDAKFINFSEEHELDYILKKYGKEPNKENRDFLKEFGKKAKEFLGKTMLGHEEFYKYLEDNSLIETLK
>NZ_CP007062.1|WP_005904402.1|176995_177250_+|hypothetical-protein
MKKFSIHGTEEGNTTSIKLDEIAILADPDTLLKIGEFIIKTAHVMKGYEVDYSQLQDEVSDFDYKNNTDIIIYNQDYDYKNDID
>NZ_CP007062.1|WP_008702882.1|177445_178180_+|glycerophosphodiester-phosphodiesterase
MTKNFAHRGFSGKYPENTMLAFQKAIEVGADGIELDVQLTKDGEVVIIHDETIDRTTDGKGYVVDYTYEELSKFDASYIYRGKVGFNKIPTLKEYFELVKDLDFITNIELKTGINEYLGIEEKVYQLIKEYKLEKKVIISSFNHFSILRMKKIAPELKCGFLSEDWIIDAGAYTASHKIECFHPRFNNLIPEVVAELKKNNIEINTWTVNKEEDINDLIDKKVDILIGNYPDLVKKIINKKNRG
>NZ_CP007062.1|WP_008702884.1|178185_179550_+|sodium:alanine-symporter-family-protein
MESLELFLTTINKWLWGRWLVYVLLGLGILYTFTNGFIQVRHFKFIIKKTLVDSFKARNDEKGSGSISTFKAMMVTLAGNVGGGNVVGVATAVAAGGMGAVFWMWVAAFFGMALKYGEIVLSQLYRGKDSEGNLLSGPMYYIRDGLKAPWLGVVIAVLMCTKMMGANLVQSNTISGVLSSNYNVPTWLTGVILICCLMAVVLGGLKRIANIATSLVPIMSIFYVVVGLLVILLNIQEVPSVIKEIFTQAFSMKAVAGGTGGYVIAKAMQYGITRGMYSNEAGEGTAPFAHGSAIVDHPCEEGITGVTEVFLDTIIICSITAIVIGVTGIYQSDLSPAVMAIESFGTVWGPLKHLATFALLLFCFTTLMGQWFNAAKSFTYAFGPKVTDKVRFVFPFLCIIGALTKISLVWTIQDIAMGLVIIPNLIALIILFPQVREQTKDYFSNSKFYPQDKK
>NZ_CP007062.1|WP_008702885.1|179558_180086_+|macro-domain-containing-protein
MYKDIIKLVSGDITKVPEVEAIVNAANTSLEMGGGVCGAIFRAAGNDLIKECKEIGGCNTGEAVITKGYNLPNKYIIHTVGPRYSTGENGEAERLASAYYESLKLAKKKGIRKIAFPSISTGIYRFPVDEGAEIALNTAIKFLDENPDSFDLILWVLDEKTYIVYKEKYEKLIKE
>NZ_CP007062.1|WP_008702886.1|180229_181618_+|aminopeptidase-P-family-protein
MLNKEVYVNRRKKLKENFKDGLILIMGNNFSPLDCEDNTYPFIQDATFKYYFGIEHNRLIGIIDIDKNEEIIFGNDYTMSDIIWMGKQKFLKELAIEVGIEKFIEKEELKKYLENRKNIRFTNQYRVDNIMYLSSILNINPFEFDKYTSFDLVKAIIKQRNIKDKIEIEEIEKAVNITREMHLSAMRNVKAGIKEYELVAEVEKQPRKYNAYYSFQTILSKNGQILHNHSHLNTLKDGDMVLLDCGALSDEGYCGDMTTTFPVSGKFTERQKNIHNIVRDMFDRAKELSKVGITYKEVHLEVCKLLAENMKKLGLMKGEVEDIVSAGAHALFMPHGLGHMMGMTVHDMENFGEINVGYDEGEKKSTQFGLSSLRLAKKLEIGNVFTIEPGIYFIPELFEKWKSEKLQEEFLNYDEIEKYMNFGGIRMERDVLIQEDGTGRILGDRFPRTADEIEEYMKVYRK
>NZ_CP007062.1|WP_008702887.1|181627_181987_+|nucleotide-pyrophosphohydrolase
MVNIQQELLKKLSDKSSINEIQSYIKKVMEVRGFNKEKSSDKILLLVEEVGELAKAIRKNENKLGIDKSKECNYSSVESEVADVFIVLLSICDILNIDLFKVFLEKEEKNIKRTWSVGE
>NZ_CP007062.1|WP_008701587.1|187829_190529_+|DEAD/DEAH-box-helicase
MIDVKFYMLVEGEDNLYLALYDTEKNLISSYSNLNQSKINNYIENLKNEEEFFISWEKEKKSEYLKLDKTLLEYLLEEEKFVNSDFERIIKKEIKNVPLLIRDNKEIEDRLDIYIEINDNLLTKKNAMNSYIYSQGVFYKIDIEKNTQFTLVDLFQKIDKYELESYGTLILKNYKNIDLKYEDYETIISEEKTAIPQIIIEKIAFDNSLYLKINSIISTMDYDFFIKNQIETVLTVNELEKKLEISKINLENLSSDMFEIVKVLTKLQKSIGLKSSYFIDNENFIILNEELAKEFVKKELLQLTGKYSIIGTDRLRKYNIKAVKPKISGRFSYNLDYFEGEVEVEVEGDKFSIQQLLNNYKKDEYIVLSDGTNALINREYIEKLQRIFKEEDGNKVKVSFFDMPIVQDMIDEKSFENDFMGSKDFFEGINKLAEENIDYPKLNATLRDYQKYGYKWLKYLTDNNLGACLADDMGLGKTLQAIALLTNLHEEKKKKSMVIMPKSLIYNWENEIKRFSPKLKVGVYYGINRDFSLLKKVDIILTTYGTIRNDIENLLEQKFDLLVLDESQNIKNINSQTTKAVLLLNSKKRVALSGTPIENNLLELYSLFRFLNPEMFGSVQEFTNDYIVPIQKYSDTSTIEELRKKIYPFLLRRVKKEVLADLPDKIEKLVYVDMNDEHRRFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSPELESKKIISSKKEVLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQNDSRYKVFVMTLKTGGVGLNLVSADTIFIYDPWWNTTVENQAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKNKLLDDLISEDNLSTKNLSKSDIEFILGS
>NZ_CP007062.1|WP_008701585.1|190538_192323_+|hypothetical-protein
MNELEHILSKRYDQEILLKLFQKYFVNWIADGYIGKELNIFEISTIGEKTDKEVLLKLFAEFYGNEENFKKIFETLSEEVKKIFKVVVWGEKFPIKKEDLKRYLDTYTDNFEKEVFIPKDEYLFFDLEEFDKDMNTAFSIKYDIARYIRNFIDNKPKDYYLHSDESSSDLAFKLYRDNNENEFINNMNFYLDFYNSGENPISSSGKILKDFKRNMQKHCGITEYYNDVKGLEFLKTETLCLIFTLLEKKYRTNTYFNNKNIKNVIDDFMTTETFDKEDTYNYTNLFLNFLKGTRNIWESPERISEVVKSLVKLLKEMPKDDVVSIDNIVKAFIYRDKDVELIAFKDVKDYIYINEANGERAKILEYKQYEDYIIEPFVKSYIFLLGIFGVFEIFYEKPFFKKGLYLKNNYLSKYDGLKYIKLTNLGRYIFGYTDKYELPKIYEKAEVQIDDKRQFVTVVGEAPAKMMFFEKIGTKVKENMFKLTYDSFIKGIKNYDELIERIERFKENIDNKELSQNWEEFFENLEKKFNSVKIEDDYVILKLENNKELIQTVIKDSRFKKLSLKAEEYHLLVKKENLKEVIKIFSEYGYYIVE
>NZ_CP007062.1|WP_008701584.1|192332_195734_+|DNA-polymerase-III-subunit-alpha
MENNFVHLNLHTEYSLSEGVNSIDNFLVRAKELGMNSLAVTDYANMFCAVEFYQKAKKMGIKPIIGLELPIFNKDEQNIFSLTLLAKNYNGYKNLVKLASELYKKNENRELKLNKEILKEYSQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENFYLEIQANELSETKIINDKFYDLAKLNGLELVATNNVYYVDRDGYELQDVIICIQSGLKVKEKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNIEITFGNLQFPYYEVPSEYSGMDEYLKTICHTNIKKLYKENLTKDILDRLEYELSVIIKMGYSGYFIVVWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDLDRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNDGITYSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKTIDKFNLAISEDFTLDEKLNKEKEFLGFYLSSHPLDRYKDIILAFRINKLSEIDLEGNQSVKTFGTITNLKKIITKKEEQMAMFNLSCYDRTISCIAFPRVYERFISELIEKKTVYIEGKIQIDNYKGERTSKLLVDKLVELDKIYEYPAKKMFILIEPEDSYRYSRLKNLINSNKGKTQITFAIKNKDEKKLQTINKGVKLSKEFFENLVELMGIGKIKFEM
>NZ_CP007062.1|WP_016361155.1|196116_196407_+|hypothetical-protein
MATVRKNITLKEEEVIIFNDYCKKTGQTLSELLRNSALKFIKEVEEMDLAEYIKLNCKEMDKVEGEEIAKIIKNIETDKDDKGVEITLDEILQGSL

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Crispr_ID: NZ_CP007062_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_2

1510404-1510511

Orphan

Consensus_repeat	Method
TGTAGGGGATAACATTGAATTGATACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007062_2

>merge|NZ_CP007062|2|1510404-1510511|CRISPRCasFinder
TGTAGGGGATAACATTGAATTGATACAATTATGTTTCTCAATGTACAGCTAAACATTGATGACACAAATACCTTTCTCAATGTAGGGGATAACATTGAATTGAACAAA

>NZ_CP007062|2|2|1510404-1510511|CRISPRCasFinder
TGTAGGGGATAACATTGAATTGATACAA	TTATGTTTCTCAATGTACAGCTAAACATTGATGACACAAATACCTTTCTCAA
TGTAGGGGATAACATTGAATTGAACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_008700018.1\|1505949_1506447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008700011.1\|1511350_1511617_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP007062.1\|WP_008692753.1\|1503546_1504575_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|223929
NZ_CP007062.1\|WP_008700009.1\|1511986_1512115_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008700003.1\|1513557_1513743_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008700024.1\|1501997_1503071_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP007062.1\|WP_008700010.1\|1511616_1511871_+\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NZ_CP007062.1\|WP_008700005.1\|1513216_1513465_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008700012.1\|1510558_1511029_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341212
NZ_CP007062.1\|WP_005905047.1\|1516575_1517445_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP007062.1\|WP_008700016.1\|1506479_1507142_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008700020.1\|1505351_1505957_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_005909561.1\|1503094_1503541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008700013.1\|1509424_1510204_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP007062.1\|WP_005909577.1\|1514582_1515557_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236898
NZ_CP007062.1\|WP_005909563.1\|1504669_1504954_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP007062.1\|WP_008700002.1\|1515549_1516557_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP007062.1\|WP_008700014.1\|1508796_1509444_+\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP007062.1\|WP_008700007.1\|1512370_1512799_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_016361376.1\|1500846_1501998_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_008700011.1\|1511350_1511617_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	2.11785e-12
NZ_CP007062.1\|WP_008700024.1\|1501997_1503071_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP007062.1\|WP_008700002.1\|1515549_1516557_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.05018e-179
NZ_CP007062.1\|WP_008700012.1\|1510558_1511029_+\|hypothetical-protein	gnl\|CDD\|341212	cd17492, toxin_CptN, type III toxin-antitoxin system toxin CptN and similar proteins. CptN-like toxin component of a type III toxin-antitoxin (TA) system, which consists of a ribonuclease (RNase) toxin that processes its structured and specific cognate RNA antitoxin, which in turn then directly inhibits the toxin. TA systems have been associated with many important phenotypes, like phage resistance, maintenance of genomic islands, and formation of bacterial persister cells.	1.68794e-37
NZ_CP007062.1\|WP_005905047.1\|1516575_1517445_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.57306e-113
NZ_CP007062.1\|WP_008700013.1\|1509424_1510204_+\|hypothetical-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	0.00190491
NZ_CP007062.1\|WP_008700010.1\|1511616_1511871_+\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	1.60826e-28
NZ_CP007062.1\|WP_005909563.1\|1504669_1504954_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	2.98365e-28
NZ_CP007062.1\|WP_005909577.1\|1514582_1515557_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.16293e-141
NZ_CP007062.1\|WP_016361376.1\|1500846_1501998_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	3.70264e-110
NZ_CP007062.1\|WP_008700014.1\|1508796_1509444_+\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	0.00232292
NZ_CP007062.1\|WP_008692753.1\|1503546_1504575_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|223929	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	1.22422e-63

>NZ_CP007062.1|WP_008700013.1|1509424_1510204_+|hypothetical-protein
MLKNSISSFNSIIKEMVDEVNELKNRLEKLKNEKLPFKLTTFQQEICDRLSILNYDGLNKISTNFIDILLELVEKEYKKCKKIEKTFLENILADYENTASNFINTISSKSQIDENTKYELIKYIAIQYFRLQKNSLKIIEKIRKVRSYKEFIRLEIPKILKSDYIIFKISSPLFCTSDNPICVLDSNFLLFPLTPYIVCITSYKYDKKLETNIFILDEIKENLFIKYINFLIINNSKSLVLSFNIEEFKSLFCNLLNKN
>NZ_CP007062.1|WP_008700014.1|1508796_1509444_+|DUF4238-domain-containing-protein
MIKPYSPKLTKNQHFIPQMYLRNFSFNFNNKKEKAEIYFLMKENITSFSKLKMEDKNFIENICYENYIYTTLDEYSAILELLKTSFNSNVNCYKNKLAFYFEALSYSQYEETFNSYNIRIKEKLENFFREKLKNISVGTVVKVCSEFSYKDPVKIIYSGNISNFLNEYNKQLVNFSLLKVKELYLNMYTNTFNNLNLKIEKLNKTFKFRYVKKLY
>NZ_CP007062.1|WP_008700016.1|1506479_1507142_-|hypothetical-protein
MIMEVFESFIKGLYLLFSETSILILIVLSIIILLKERIIIDNFKFVIFMFSITFPFILLFLVKFFSTNFSLDGWLGFLGSYLGIIGTFGALYWKSNLEKNEKNKQMDSYISYIIKKNKENFDKNFKNLNKYLYEISSIYTDNDNEIKKYSFDLPNFHKNFIENNFEYILTLPRGNDFITLYNVLTKINSLTSNFIEYLEREREALIKIIQTLSIKSINLL
>NZ_CP007062.1|WP_008700018.1|1505949_1506447_-|hypothetical-protein
MVNNFHRSAEDEIDYYSFYFQGFIIFKLKMTSLIIENYNNDKILENILKQIEIIPQMKNYNEQKFGFFEPFQNLTSEYVKTLAEINEENKMLKALTFDLLFRKYQLNLILLFSNLVGKVAQYFICSPFYREVMKTNQELKYCDFWIKEFIEAFMEYYKILNKFNE
>NZ_CP007062.1|WP_008700020.1|1505351_1505957_-|hypothetical-protein
MNNFYKIVKGELKMEKKKFEDKTIESEILKNIKEAIEKIEKKFYNIISVNCGERIRERVFCYELYHQLRLIKFDCKFDIHGELDKSGFYDVDVIPDFLFHKQGTDENYCIMEVKGEIRSNGICKDFNTLSKFLVEQKEIKAYRLAIFLLFNHSLEVFISFLKRNRKVIDLDKYSEKIVILCKKDKNSEIETCILEEIKSQL
>NZ_CP007062.1|WP_005909563.1|1504669_1504954_-|preprotein-translocase-subunit-YajC
MQELFSKYGNVVIIVIVWIAIFYFLIIRPNKKKQQQQQNLLNSLKEGTEVITIGGIKGTIAFVGEDYVEIRVDKGVKLTFRKSAIANVINNNQQ
>NZ_CP007062.1|WP_008692753.1|1503546_1504575_-|N-acetylmuramoyl-L-alanine-amidase
MKKKLLSVFFFFLVSVLSFSAKVSDVKFSANKFIINLNAADGECLVSADEESRLIYIEIQNLDSSSFEKFSRNLELDIRSSNLFEDVIIDKSKDSVSLTLQVAPKVSYTMDTTNKRIELNLQRTSKNKHLIVIDPGHGGKDPGAARGSVVEKKIVLAVGTYLRDELSKDFNVIMTRDSDFFVVLSERPKIGNKNKAALFVSVHANASDNKSANGVEVFYFSKKSSPYAERIANFENSIGEKYGDSSDKIIQISGELAYKKNQENSIRLAKKIVENIADRLEMRNGGVHGANFAVLRGFNGTGVLIELGFVSNSYDSEILVDSNSQQKMAEEIAKSIREYLTR
>NZ_CP007062.1|WP_005909561.1|1503094_1503541_-|hypothetical-protein
MNKNIKMIDLKKLKKINVTVLLLVIVAILGIITLLMPSKDKIGEIEVRKVEQKKEEMVEVTVYGVTEGSDSPSKYTLTLKEASTSDLLKSAVEDMVKKYSSDLELVNIYFSDDTVYYEFNKKDLSEAFLNALQMTTQEITGVEEINLL
>NZ_CP007062.1|WP_008700024.1|1501997_1503071_-|peptide-chain-release-factor-1
MFDKLEEVVARYDELNKMLVSPEILADSKKMIECNKALNEITEIVEKYKEYKKYVDDIEFIKESFKTEKDPDMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRAGAGGDEAALFAADLFRMYSRYAERKKWKIEIIEKQDGELGGIKEIAFTIIGLGAYSRLKFESGVHRVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSAVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGDRAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ
>NZ_CP007062.1|WP_016361376.1|1500846_1501998_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MNLVEILKFTEEYLKKYSFSKPRLEAEKLVSYVLNLDRIALYIHYERELSEDEKTSIKQYLKKMVEENKTFDELKGEKKDFKEENLDIFNKSVEYLKKNGVPSPLLDTEYIFSDVLKVNKNTLKYSMSREIKKEDKDKIREMLVLRAKKRKPLQYILGEWEFYGLPFKVNEGVLIPRADTEILVEQCIQLMREVEEPNILDIGSGSGAISIAIANELKSSSVTGIDINEKAIELAIENKTLNKIENVNFIESNLFEKLDKDFKYDLIVSNPPYISKEEYRTLMPEVKNYEPQNALTDLGDGLYFYREISKLAGEYLKDTGYLAYEIGYNQAKDVTKILQNNNFDVLSVIKDYGGNNRVVIAKKAVKTENFEEIEEEEDVNLSE
>NZ_CP007062.1|WP_008700012.1|1510558_1511029_+|hypothetical-protein
MEINGIYFAKGEFYQIIRDIGGVWNDSKERPIVCLLKIDDTDIYWAIPMGNLNHRNEKAKERLDFYLNIEESDIRSCFYHIGKTTTDTIFFISDVIPIKEIYIDREYLGFNNIHYVIKNKKLIFELERKLKRILYFEDSRPNYFRQHITDLKNKCC
>NZ_CP007062.1|WP_008700011.1|1511350_1511617_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MSMKLINIRMDEDLKKEMEIVCNDLGINITTAFTIFAKKLTREKRIPFSVSIDPFYSNENIAALQNSIDEVKDGKVIMKTIEELEAME
>NZ_CP007062.1|WP_008700010.1|1511616_1511871_+|Txe/YoeB-family-addiction-module-toxin
MKISFSIQAWEEYLYFQTQDKKTLKKINELIKDIERNGALNGIGKPEKLTNNLSGLYSKRINDKDRLVYENDFIVILETVKFFL
>NZ_CP007062.1|WP_008700009.1|1511986_1512115_-|hypothetical-protein
MIPQSRFNELVEEKNKLKTDLTERDKQLFELEEKNYIKRYKL
>NZ_CP007062.1|WP_008700007.1|1512370_1512799_-|hypothetical-protein
MKKILVILLLLILSITVFSLDVDINELQKKFPDSKIQVSSSGNNSNKLIAIIKPNNDIIWIMISHNKEFEDLGYDIKEIYNKVGFKLEQKTANMLVMKKNYEGVFFIKGNYKKLYFVHKYINIFEAQNIEKDEGLIESCMIN
>NZ_CP007062.1|WP_008700005.1|1513216_1513465_-|hypothetical-protein
MVRIKKKIFLSYLDKRVEVLPRLKKFKKFKKCKTISDFARIVYYERHKGKNAIWGPIRNVVFKKELALLEYGKQYLEYIEKI
>NZ_CP007062.1|WP_008700003.1|1513557_1513743_-|hypothetical-protein
MSLNNKVNLESKNKSDTIRLRNAAIDKEITINKFNEIHLNDKRKMSYREKTLFLESYHTNI
>NZ_CP007062.1|WP_005909577.1|1514582_1515557_-|ATP-binding-cassette-domain-containing-protein
MSKVLLEVKNLKKYFQTPKGQLHAVDNVNFAIEEGKTLGVVGESGCGKSTTGRTILRLLEATDGEILFEGKNIRKYSKAEMKKLREKMQIIFQDPFASLNPRMTVSEIIAEPLIIHKKCKNKQELNNRVKELMDTVGLSQRLVNTYPHELDGGRRQRIGIAKALALNPKFIVCDEPVSALDVSIQAQVLNLMKDLQEKLGLTYMFITHDLSVVKYFSNDIAVMYLGELVEKAPSKDLFKNPIHPYTKALLSAIPTINIRKKMERIKLEGEITSPINPGIGCRFAKRCIYAEEICSKESPKLEKVGEAHFFACHRAKELGFVNEK
>NZ_CP007062.1|WP_008700002.1|1515549_1516557_-|ABC-transporter-ATP-binding-protein
MENRNLLEIRDLEIQYVKDDETVHAVNGINIDIAEGETLGLVGETGAGKTTTALGIMRLITGPTGKIKSGAIEFNGKSILEISEEEIRKIRGNDISMIFQDPMTSLNPVMTVGEQIAEVIEIHEHVTKEEAMNKAAEMLELVGIPGTRKNDYPHQFSGGMKQRVVIAIALACNPKLLIADEPTTALDVTIQAQVLDLMTDLKNKFKTSMLLITHDLGVVAQVCDKVAIMYAGEIVEYGTLEDVFENPKHPYTLGLFGSIPSLDEEKTRLVPIKGLMPDPTNLPTGCKFNPRCPHAVELCSQRTPVVTEVSKGHKVQCLIAEGLVKFRENWEEENE
>NZ_CP007062.1|WP_005905047.1|1516575_1517445_-|ABC-transporter-permease
MEKTKNKKQSQWAEVFRMLKKNRMAMLGLIILVILVLLALFADVIANYDAVVIKQNLAERLMPPNGEHWLGTDEFGRDIFARLIHGARVSLKVGILAISISVIVGGILGAISGYFGGVIDNIIMRVVDIFLAVPSILLAIAIVSALGPSMLNLMISISVSYVPNFARIVRASVLSIRDQEFIEAAKAIGASNSRIIMKHIIPNSLAPVIVQGTLGVAGAILSTAGLSFIGLGIQPPAPEWGSMLSGGRQYLRYAWWVTTFPGVAIMITILSLNLLGDGLRDALDPRLKQ

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Crispr_ID: NZ_CP007062_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_3

1647623-1647713

Orphan

Consensus_repeat	Method
TTCAAGGATTTTTCCGTTGCCTTGCCAACAACT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP007062_3

>merge|NZ_CP007062|3|1647623-1647713|CRISPRCasFinder
TTCAAGGATTTTTCCGTTGCCTTGCCAACAACTTCAGCTCCCATAGTCTGAAATGAATTTCAAGGATTTTTCCGTTGCCTTGCCAATAACT

>NZ_CP007062|3|3|1647623-1647713|CRISPRCasFinder
TTCAAGGATTTTTCCGTTGCCTTGCCAACAACT	TCAGCTCCCATAGTCTGAAATGAAT
TTCAAGGATTTTTCCGTTGCCTTGCCAATAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_005909813.1\|1656534_1657863_-\|2-hydroxyacyl-CoA-dehydratase-subunit-D	unknown	unknown	gnl\|CDD\|224689
NZ_CP007062.1\|WP_005906657.1\|1654760_1655354_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|372554
NZ_CP007062.1\|WP_008702513.1\|1643612_1644365_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187608
NZ_CP007062.1\|WP_008702502.1\|1653668_1654532_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP007062.1\|WP_008702516.1\|1641697_1642567_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP007062.1\|WP_050977177.1\|1648079_1648346_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224583
NZ_CP007062.1\|WP_005909807.1\|1644483_1645236_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP007062.1\|WP_008702512.1\|1645235_1645808_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP007062.1\|WP_005909812.1\|1655364_1656513_-\|2-hydroxyacyl-CoA-dehydratase-subunit-D	unknown	unknown	gnl\|CDD\|224689
NZ_CP007062.1\|WP_016361390.1\|1647799_1648033_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200071
NZ_CP007062.1\|WP_008795124.1\|1640962_1641685_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP007062.1\|WP_008694125.1\|1658104_1658902_-\|2-hydroxyglutaryl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|224835
NZ_CP007062.1\|WP_016361389.1\|1642583_1643216_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP007062.1\|WP_005906659.1\|1646348_1646891_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702521.1\|1639293_1640970_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP007062.1\|WP_008702511.1\|1645817_1646324_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|224692
NZ_CP007062.1\|WP_016361392.1\|1652023_1653691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702507.1\|1649629_1651987_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|177094
NZ_CP007062.1\|WP_016361391.1\|1648455_1649589_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702510.1\|1646940_1647558_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_005909813.1\|1656534_1657863_-\|2-hydroxyacyl-CoA-dehydratase-subunit-D	gnl\|CDD\|224689	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism].	2.83247e-150
NZ_CP007062.1\|WP_005906657.1\|1654760_1655354_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	5.13125e-38
NZ_CP007062.1\|WP_008702513.1\|1643612_1644365_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187608	cd05350, SDR_c6, classical (c) SDR, subgroup 6. These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.73124e-44
NZ_CP007062.1\|WP_008702502.1\|1653668_1654532_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	8.81505e-20
NZ_CP007062.1\|WP_008702516.1\|1641697_1642567_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	2.79077e-109
NZ_CP007062.1\|WP_050977177.1\|1648079_1648346_-\|hypothetical-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	1.70741e-12
NZ_CP007062.1\|WP_005909807.1\|1644483_1645236_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.85975e-60
NZ_CP007062.1\|WP_008702512.1\|1645235_1645808_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	2.05466e-84
NZ_CP007062.1\|WP_016361390.1\|1647799_1648033_-\|hypothetical-protein	gnl\|CDD\|200071	TIGR01041, V-type_ATP_synthase_beta_chain, ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases. [Energy metabolism, ATP-proton motive force interconversion].	0.000607762
NZ_CP007062.1\|WP_008795124.1\|1640962_1641685_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	5.51729e-76
NZ_CP007062.1\|WP_008694125.1\|1658104_1658902_-\|2-hydroxyglutaryl-CoA-dehydratase	gnl\|CDD\|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	2.6682e-112
NZ_CP007062.1\|WP_016361389.1\|1642583_1643216_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.43718e-15
NZ_CP007062.1\|WP_008702521.1\|1639293_1640970_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP007062.1\|WP_008702511.1\|1645817_1646324_+\|HAD-family-hydrolase	gnl\|CDD\|224692	COG1778, COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only].	1.72085e-80
NZ_CP007062.1\|WP_008702507.1\|1649629_1651987_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	1.00843e-114
NZ_CP007062.1\|WP_005909812.1\|1655364_1656513_-\|2-hydroxyacyl-CoA-dehydratase-subunit-D	gnl\|CDD\|224689	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism].	4.04036e-144
NZ_CP007062.1\|WP_008702510.1\|1646940_1647558_-\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	1.41986e-10

>NZ_CP007062.1|WP_008702510.1|1646940_1647558_-|hypothetical-protein
MKENIELLMKKLNKAYLIYKNEFLNKDFLVIARKGKNIEIIEINFRKEHLKHLVGIKGIKANEFFEKISQNRLSIKELKELGKNPYIIEKLNSFSKLKKLLEESPYLYDFYPHSTPKIQLDKIIANINREIKKELIGLKFLKSSSGKSYVPASIERRKALEITTEERKRIIFILEKNLVEREYIKILFKVEDENLSLYLNEEVEK
>NZ_CP007062.1|WP_005906659.1|1646348_1646891_+|hypothetical-protein
MLNFKKINKMIDLIEESQIMEGMTFNEFAMEFYSEVKLVPLSRYLKTNNKVKRMPKIMNMRKAGELLLFTKTDDETLSFLKRKGYNEMPSLDYKTIMLLRKLDPIDNWKKILAFLNGDKTVEEINMSTRPILFPQEIKKLEEYIKDELNLNDEEFEKFMSISSIAVKNKEVMKAIKKLSR
>NZ_CP007062.1|WP_008702511.1|1645817_1646324_+|HAD-family-hydrolase
MENIKILVLDVDGTLTDGKIYVDDKDNSFKAFNVKDGFALVNWIKLGGEVVILTGKKSNIVERRAKELGIKYVIQGSRNKTQDLKNLLNKLNITFENTAYMGDDLNDLGVMKNVALSGCPKDSIQEVLEISNFISTKNGGDGAVREFLEYIMKNNGMWKKILEKYSSE
>NZ_CP007062.1|WP_008702512.1|1645235_1645808_+|crossover-junction-endodeoxyribonuclease-RuvC
MRVIGIDPGTAIVGYGIIDYDKNKYSVVDYGVILTSKDLSTEERLEVIYNNMNKILKKYKPEFMAIEDLFYFKNNKTVISVAQARGVILLVGKQNNIPMSNYTPLQVKIGITGYGKAEKKQVQQMVQKFLGLSEIPRPDDAADALAICITHINSLGSKLNFTGTNILKKIVVPSGTNKISLEEYRNLLKK
>NZ_CP007062.1|WP_005909807.1|1644483_1645236_+|MgtC/SapB-family-protein
MPNILEMIDRFLNLKFANELTVEVVCFRLILAIILGGIVGYEREKNNRPAGFRTHILVCFGAAIVSMVQDQLRLNILDLARTEGTAVASVIKTDLGRLGAQVISGVGFLGAGSIMKEKGETVGGLTTAAGIWATACVGLGIGWGFYNIAVVAILFMIIIMATLKKLESRLVKKSRLLKFEVKFFDTDEFANGLIEAYEVFRKKSIKIAEIDKYQEDGVVTFTVDMKGRSNISDVVVLLSSIKNVEYVRDV
>NZ_CP007062.1|WP_008702513.1|1643612_1644365_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKIFIVGGSSGIGLSLAKRYASLGNRVAICGTNEEKLKKIKESNNNIEVYKVDVRNKEELKSAIDDFSRENLDLIINSAGIYTNNRTAKLTDKEAYAMIDINLTGVLNTFEAVRDMMFKNNRGHIAVISSIAGLLDYPKASVYARTKMTIIGVCETYRAFFRDYNINISIIIPGYIATDKLKSLSEEDVSKKPTVLSEEEATNITIKAIEEKKEKIIYPLSMKILILIITKLPKRLLTYILMKQANWGKK
>NZ_CP007062.1|WP_016361389.1|1642583_1643216_-|Crp/Fnr-family-transcriptional-regulator
MISKEDIKHLEKIFPFWLDINQNDRAKIILSSRILSLKKNAIFFNSHDLDGLLFLKSGRLRFFLSHLEARELPLYYLNNMEIEFFEDFSDNSTSTILDIAFIVEKNSEILLIPYSVLNLFRNKYSVLEKFLHNLTREKFSKSLLSLQNILLIPLKDRLLKFLYSLNKTEISLTHEEIAKNLGSSREVISRNLKILEKENFLKVNRKKLLY
>NZ_CP007062.1|WP_008702516.1|1641697_1642567_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MKKPIIGISASMIYEEKDELFLGDKYSCAAYSYIDAVYKSWGIPITLPILKDVSAIREQVKLLDGLILSGGRDVDPHFYGEEPLEKLEAIFPERDVHEIALIKAAIDLKKPIFAICRGMQILNVACGGTLYQDISYAPGEHIKHYQIGSPYQATHTIKIDKNSILFKMADKMEIERVNSFHHQALKQVAKGLKVVATAPDGIIEAVEAENEDGPFILGVQFHPEMMFDKSTFVRGMFKRFINICIESRPAEVILKDETHHTEENKEKNIDEKIKEIEDEEKKEFFKGDL
>NZ_CP007062.1|WP_008795124.1|1640962_1641685_+|response-regulator-transcription-factor
MINCIIVEDELPAREELKYFLNEEKEINLIAEFNNPLDTLNFLENNTADVIFLDINMPDMNGISLGKIITKMYPDMKIVFITAYKDYAVDAFEIKAFDYLLKPYSESRIKNLLKSLINIKNEKTTSIKNNNLKKITVNIDERLYVISLNDIDYIEASEKETLIFSNQKKYVSKIKISKWEEMLKENNFYRCHRSFIVNLDKITEIEQWFNSSWILKIKNYTTAIPVSRNNIKELKELFLA
>NZ_CP007062.1|WP_008702521.1|1639293_1640970_+|sensor-histidine-kinase
MNIQFISHLISNIGCSAIIAFFFIRIDKANIIIKSNAKTKKDIIALSFFFSLLSISGTYIGLNFNGAILNTRNVGVIAGGILGGPYVAIITGLVAGIHRAFVNLGRETAIPCAIATITGGFLTAYVHRFIKSKDKIFFGFFLACVVENLSMGLILIILKDKILAQNIVANFYVPMVFMNSIGSSVLILLVEDIIQKSELIAGRQAKLALEIANKTLPHFRETENLSEVCKIIAEDLGAKATVITNKKEIIAGFSFDKDEIKKADIKSNNTRKVLKTGEAMLVIKEDDEIIEDFLDISPHIKSCIILPLKEKNDISGTLKIFFDTAEKITDKNRYLMIGLSHLISTQMEISKVENLISLLKYSELKALQSQINPHFLFNVLNTMTSLIRTNPEKAREVIIDLSNYLRYNLDNNVKSVELIKELNQVDTYIKIEKVRFGDKLNILYDVDESLYNFQIPSLIIQPLVENSIKHGILKKRDNGCVKIIIKKIDKDIEITIEDDGVGIEQSIIDNLDKQIKENIGLKNVHQRLKLLYGEGLNIKKLEQGTRIKFKILGGVKYD
>NZ_CP007062.1|WP_016361390.1|1647799_1648033_-|hypothetical-protein
MSKRKNKYLDFSDYFNDEEKVSKEDKSIIELETLLIGKKIKEKNIEDEYDLKIYKEYLKQKEEGTLKTYSHKEVWKE
>NZ_CP007062.1|WP_050977177.1|1648079_1648346_-|hypothetical-protein
MDKKYILEKLSQIDKSKYNISELGLFGRYAKDKADDNSDIDILVKIEFKKGMYQNFCESQKELEKIFNKKIDLIEKGTFDYKFRSDNV
>NZ_CP007062.1|WP_016361391.1|1648455_1649589_-|hypothetical-protein
MSEDKKLKEEFCVFFDVLGTKSKFLTSNLEEEEKLVKKYENFIKDIKEILIENGFEENKIKLFSDNIFINFPNVTLKEMYDVFRCLAYIQIMTIKKYDFLLRGGVEYSTIYNEKDIVIGKGLVEAVELEKKANYPIIMLGERAQKEDFKNHYLVDEKYINETLKKLDIKNIQDIKKIDIEQEVDKIKIEKKINGESGATVIRINDRTYINYLGIYHESQNKENFIKMMLSHKNFIIESLKKNKEEFLKNIKNFDSKELKNHFDYIFYNIKKNYILEYIKEIDEQNSQIDSNIFENEYNKNNRRKEELINNLKNIEKYIEKKYFYLKDIENNILKIREKYIYLLYYHNSFLERVYKLYKDIEDVDYNDCFIDIYKEIL
>NZ_CP007062.1|WP_008702507.1|1649629_1651987_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
METNLVKYLRARRPIIWVNSGDYKEIDTIVKEATKDYQDKAIYEYRAFGAVDFETKVKEEEITDLYNFLDKLYSEGIKTNVFLLIKNAEEEMKDAKNIAYIKKIAETRYSSPDYNFTIIVISETETVPKELEKFTSILDIPNMSKDEIEKYILKFSKDNNIKVDEKDIGEVAISLKGLTKLEIDHVLNMIIESKNNISISGRDIIIKEKGQIIKKSSILEIIDFKEKIEDIGGLEGLKEWLKSKAQVFRRLDEAKKFGVDTPKGVLLVGMPGCGKSLAAKASARLFNVPLLRLDIGRLLGKYVGESEHNMRVALKTAESISPCILWIDEIEKAFAGINQDGGASDITKRLFGQFLTWLQEKENTVFVVATANDITAFPPEFLRKGRFDEIFFIDFPNEEEREKIFKIHLEKRGKLNDKIDIKELAEKTIGYCGSDIEEVVKMTVETIFNIEDIENEEDSKLTTQDLLDSIKSIDSLSNILADKIEVLKKGYDKFKIKSASKKIAPTQRIKEKFKVDKVLELDNMVFVRGGKYKPSFADEEKEVCNLEVCKYPTTQEMWLEIYKNNPSYFIGDKRPVEKVSWWNAIRFCNEMSKKYKLEPVYNITYDDFDNPILKINQIGESPVEPDKADFRKTEGFRLPTEVEWEWFARGGEVAIQDGTFDKKYAGSDNPDKVAWYDNNSEEQTHDVGTKNPNQLGLYDCSGNVWEWCYDSKGYKFWEKAPKETLYYYKNSLDRGDRITRGGSWKDHTNKGYGGSFDINTREIYICNGESTYGYYNIGFRIVRTV
>NZ_CP007062.1|WP_016361392.1|1652023_1653691_-|hypothetical-protein
MFGLRGSRKRKTEEIIKKFLKSYAENEKSQDKKDLKTWLVSELQNELPNKKVEDIEKIATELITGIEIYYQKKKEVEKYQSVGITNGDYVGNEILEKVADEIEEAEIIDTKEVIEDMKEASNILSQYNETMMYETAAIKEPQLVANVLSANSVNNYVDSVNTAIDNANKTMMESVTTKAGMINQNPNLDGFIFEEYHAGTFNIDAAVKQKSYHAEALKPELGETYGKNSIDLIIEDTDKYVKKYSAKAYKNANESAKAFYDKVTGYKYKFQSKLVPTDQTGDIANSVDKIKFNNVESKGITKAEIKDIQKNLQSGNKTGDILNFKKDVNTISISKQIGKQAMLNGTMGVGIGMAANIGVNLITGKEVEAEEVIEVGIKTGASMGMATAVAGGIRVAVEKKVIPTVFSRMLTNNTIGAIAAASMDIIGTAFKLGSGEISLGQAVKDVGSSISAGYGAIISSGIGFSGGMALATTIGLGTIGTVGTILTGGLALAAGAVCGVVGSNIALKIANGLGKITEKVVDKAVDIVKSGVNKVKNTVSSAWSGVKSFIRKLFN
>NZ_CP007062.1|WP_008702502.1|1653668_1654532_-|WYL-domain-containing-protein
MKKVRFTISDFMNEIIKSDSEYFKLQIGKIGNIIFNYYIDKNLNKVELEDSSGEVIQFNLNKSNEEIFMDTLIRNKIETEAEYWRNIFFTYINNLRYKREEILFEKNFKNIEKAIKDKNKIKIKYHNYIRLINPYFIKVSDSESRSYLFCYCEKNNDYRNYRISEIEEIWFTNEKIEVKDKKYIDEVYKKFDPFLSYKNRVKVKFTEKGLELYEKVLTNRPRLLNKDNNIYTFECDNKLAIVYFAQFFSLIEILEPQELRKKLQNELENTLKIYKNEEEKDVWFEGK
>NZ_CP007062.1|WP_005906657.1|1654760_1655354_-|leucine-rich-repeat-domain-containing-protein
MEQNIWEYDDFIFKGDELKGMTQKGKDKVKLEGKTDLVIPELTPDGLPLKKIGDNAFYRRGLTSVVIPNTVESIGYDAFGVCKLKEVKLPEALVNIEGFAFYRNKLTKVEFGSKVKRLEPSSFAMNELPELNLPESLEYIGASAFYKNALETVSFPKSVTKIDMYAFRKNNIHKVEVANSVDLHKFAFEPFTAVERF
>NZ_CP007062.1|WP_005909812.1|1655364_1656513_-|2-hydroxyacyl-CoA-dehydratase-subunit-D
MAEIKELLEQFKYYAENPRKQLDKYLAEGKKAVGIFPYYAPEEIVYAGGMVPFGVWGGQGPIEKAKDYFPTFYYSLALRCLEMALDGTLDGLSASMLTTLDDTLRPLSQNYKVSAGKKIPMIFLNHAQHRKEDFGKQYNAKIFNNAKEELEKICNVKITDENLKKAFKVYNENREEKRRFIKLAAKHPQSVKASDRSNVLKSSYFMLKDEHTDLLRILNQQLEALPEEQWDGVRVVTSGIITDNPGLLEVFDNYKVCVVADDVAHESRALKVDIDLSIADPMLALADQFARMDEDPLLYDPDIIKRPKYVLDLVKENNADGCLLFMMNFNDTEEMEYPSLKQAFDEAKVPLIKMGYDQQMVDFGQVKTQLETFNELVQLSRF
>NZ_CP007062.1|WP_005909813.1|1656534_1657863_-|2-hydroxyacyl-CoA-dehydratase-subunit-D
MAGKMEKLPNKKPRPIEGHKPAAAILRGVVDKVYANAWEAKKRGELVGWSSSKFPIELAKAFDLNVVYPENHAASAAAKKDGLRLCQAAEDMGYDNDICGYARISLAYAAGEPTDARRMPQPDFLLCCNNICNMMTKWYENIARIHNIPLIMIDIPFSNTVDVPEEKIDYLLGQFNYAIKQLEELTGKKFDEKKFEDACARANRTAAAWLRACKYMGYKPSPLSGFDLFNHMADIVAARCDEEAAMGFELLADEFEQSIKEGTSTWEYPEEHRILFEGIPCWPGLKPLFEPLKDNGVNVTAVVYAPAFGFRYNNIREMAAAYCKAPCSVCIETGVEWRETMAKENGISGALVNYNRSCKPWSGAMPEIERRWKEDLGIPVVHFDGDQADERNFSTEQYNTRVQGLVEIMQERKEEKLAKGEEVYTNFENTKETDWSKETIKH
>NZ_CP007062.1|WP_008694125.1|1658104_1658902_-|2-hydroxyglutaryl-CoA-dehydratase
MSNVFTMGIDVGSTASKCVILKDGKEIVAKSVISVGTGTSGPARAMKEALEQVGLSSVSELQGAVATGYGRNSLAEVPAQMSELSCHAKGAYFLFPNVHSIIDIGGQDSKALKIGDNGMLENFVMNDKCAAGTGRFLDVIAKVLEVNLEDLEKLDEKSTVDVAISSTCTVFAESEVISQLAKGTKIEDIVKGIHTAIASRVGSLAKRIGIKDDVVMTGGVALNKGMVRALERNLGFKIHTNEYCQLNGAIGAALFAYQKYMMTHQ

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Crispr_ID: NZ_CP007062_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_4

1782873-1782967

Orphan

Consensus_repeat	Method
GATTATTAAATGGTTAGAGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007062_4

>merge|NZ_CP007062|4|1782873-1782967|CRISPRCasFinder
GATTATTAAATGGTTAGAGAAGATTTGAAAAATTTTACAATCTTAAATAGATTAAAATAATTAAAAAGGGTGAATTATTAAATGGTTAGAGAAGA

>NZ_CP007062|4|4|1782873-1782967|CRISPRCasFinder
GATTATTAAATGGTTAGAGAAGA	TTTGAAAAATTTTACAATCTTAAATAGATTAAAATAATTAAAAAGGGTG
AATTATTAAATGGTTAGAGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_008702371.1\|1776880_1777864_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP007062.1\|WP_008702377.1\|1771757_1772756_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|179641
NZ_CP007062.1\|WP_008702376.1\|1772787_1774065_-\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|225930
NZ_CP007062.1\|WP_008694348.1\|1789869_1791246_-\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
NZ_CP007062.1\|WP_005908527.1\|1784369_1784795_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702362.1\|1784953_1785364_+\|methylaspartate-mutase-subunit-S	unknown	unknown	gnl\|CDD\|179400
NZ_CP007062.1\|WP_008702375.1\|1774084_1774852_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP007062.1\|WP_008702368.1\|1780282_1781212_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|235964
NZ_CP007062.1\|WP_008702359.1\|1788410_1789076_-\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP007062.1\|WP_008702369.1\|1779011_1780286_+\|coenzyme-F390-synthetase	unknown	unknown	gnl\|CDD\|274074
NZ_CP007062.1\|WP_050977179.1\|1792857_1794258_-\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NZ_CP007062.1\|WP_016361414.1\|1775018_1775912_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702367.1\|1781224_1782859_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
NZ_CP007062.1\|WP_005909975.1\|1791498_1792620_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702360.1\|1786901_1788359_+\|methylaspartate-mutase-subunit-E	unknown	unknown	gnl\|CDD\|227202
NZ_CP007062.1\|WP_008702357.1\|1789093_1789747_-\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NZ_CP007062.1\|WP_008702370.1\|1777826_1778639_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293816
NZ_CP007062.1\|WP_008702354.1\|1794574_1795198_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP007062.1\|WP_008702361.1\|1785498_1786887_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379405
NZ_CP007062.1\|WP_008702372.1\|1776021_1776795_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_008702371.1\|1776880_1777864_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	8.12731e-52
NZ_CP007062.1\|WP_008702377.1\|1771757_1772756_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|179641	PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA.	0
NZ_CP007062.1\|WP_008702376.1\|1772787_1774065_-\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	1.74159e-115
NZ_CP007062.1\|WP_008694348.1\|1789869_1791246_-\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	0
NZ_CP007062.1\|WP_008702370.1\|1777826_1778639_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293816	cd07730, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. Some members of this subgroup are annotated as GumP protein.	1.50191e-67
NZ_CP007062.1\|WP_008702362.1\|1784953_1785364_+\|methylaspartate-mutase-subunit-S	gnl\|CDD\|179400	PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional.	6.43906e-80
NZ_CP007062.1\|WP_008702375.1\|1774084_1774852_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.02096e-83
NZ_CP007062.1\|WP_008702368.1\|1780282_1781212_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|235964	PRK07204, PRK07204, beta-ketoacyl-ACP synthase III.	7.88595e-94
NZ_CP007062.1\|WP_008702359.1\|1788410_1789076_-\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	6.27701e-111
NZ_CP007062.1\|WP_008702369.1\|1779011_1780286_+\|coenzyme-F390-synthetase	gnl\|CDD\|274074	TIGR02304, conserved_hypothetical_protein, putative adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.	0
NZ_CP007062.1\|WP_050977179.1\|1792857_1794258_-\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	1.04757e-67
NZ_CP007062.1\|WP_008702367.1\|1781224_1782859_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	8.68968e-79
NZ_CP007062.1\|WP_008702360.1\|1786901_1788359_+\|methylaspartate-mutase-subunit-E	gnl\|CDD\|227202	COG4865, COG4865, Glutamate mutase epsilon subunit [Amino acid transport and metabolism].	0
NZ_CP007062.1\|WP_008702357.1\|1789093_1789747_-\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	9.17777e-108
NZ_CP007062.1\|WP_008702354.1\|1794574_1795198_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60326e-58
NZ_CP007062.1\|WP_008702361.1\|1785498_1786887_+\|hypothetical-protein	gnl\|CDD\|379405	pfam13941, MutL, MutL protein. This small family includes, GlmL/MutL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family.	0
NZ_CP007062.1\|WP_008702372.1\|1776021_1776795_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	3.1413e-91

>NZ_CP007062.1|WP_008702367.1|1781224_1782859_+|AAA-family-ATPase
MQKSIGIGIENFKKVINENCYYVDKTKYIEDILKDKSEIKLFTRPRRFGKTLNMSTLKYFFDIHNKDENRKLFSGLDIEKSPYFSEQGQYPVVFISLKGIKNNSWKDALFNIKSLLRELYEEFSFIKNSLSSSEQDEFDKIWFKKDDGEYENALKNLTTYLYKYYKKEVILLIDEYDSPLISAYKYQYYEDASTFFKIFYGEALKTNPYLKMGIMTGIIRVVKAGIFSDLNNLKVYSILDDFYSDFFGFTQNEVEEALKYFGIEYEISQVKTWYDGYKFGNSDIYNPWSILNFLSDRKIRPYWIDTSDNFLIKDILKNVDIDTMDTLQKLFLGENVKVSINGYSDLSSLLEQLDLWEFLLFSGYLTINEKVGEDYVDIYSLRIPNREVREFFKKKFIDAKFGESLFRKAMEALTNLKFNSFEKYLQDILLKSTSYHDTKNEDFYHGLVLGMMFYLDNQYYVKSNEESGLGRYDVIAEPKNKNNSGFILEFKIIDNEKDLEKTSQKAIKQIIEKKYDTTLKNRGIKDITLVGIAFFGKLVKISYK
>NZ_CP007062.1|WP_008702368.1|1780282_1781212_+|ketoacyl-ACP-synthase-III
MRKIQFIGYGVELPKNTVNFKEQTRYRISGDEKQISLAVSACQKALKNANITINDIDCIVSASAVGIQPIPCMAALIHEKIAKGTSIPALDINTTCTSFITALDIMSYLLEAGRYKRVLIVSCDVASRALNPKQKESFQLFSDGAVAFVIEKTDKEIGVIDAIQKTWSEGAHSTEIRGGLSNFHPENYSESTKEEFMFDMCGKTILALSMKKIPKMMKEFLENNNMKISDIDIVVPHQASVAMPLVMEKLGVPKGKYIDEVKEFGNMVSASVPMTLAHALEKQKIKNGDIILLIGTAAGLTTNMMLIKI
>NZ_CP007062.1|WP_008702369.1|1779011_1780286_+|coenzyme-F390-synthetase
MKKIFKIILTFIKVRYFSKWTSRDKLLKYQEKQVEKHLKFLKENSPYFKIHQITEDFTMNKTFMMENFDELNTLGVKKDEAMEIALNSEKTRNFNQKYKNISVGLSSGTSGHRGMFITTPEEQGIWAGTILAKLLPKNNIFGHRIAFFLRADNDLYKTINSFLISLEYFDTFKDIDEHIERLNKYKPSMVVAPPSLLLILAKKIEEGELKISPKRVISVAEILEKPDEEYIKKQFKLNIIHQIYQATEGFLACTCEYGHLHLNEDLIKFEKKYIDEKRFYPIITDFRRTSQPFVNYYLNDILVEATEPCECGSVLQRIEKIEGRSDDIFKFINKSGKEVVIFPDFIRRTILFVENIREYQVFQINNNLLEVAILNITEEQKELIKKEFNKLFTSLEIENIEIKFINYEIDKTKKLKRIVRKVVE
>NZ_CP007062.1|WP_008702370.1|1777826_1778639_+|MBL-fold-metallo-hydrolase
MLNTAEKMIEKVDYFACGYCTNDLKKVFKGFEKTIVNFYAGVFLIKHKKLGYILYDTGYSMNILKNNLKYFLYRFANPITLKKEDMIDYQLKEKDIDKEEIKYIIISHLHPDHIGGLKFFPNSYLILTKTCYNDYKLKKDSLLIFNELLPNDFEDRLILIDNYKENSLFPYKNSFDLFSDLSMLIVEVDGHTKGQACLFLPEKNLFIAADVCWGTEFLPFTDKMKWLPRKIQNNFEDYKKGSDLLKKLIEDNISVIVSHDKKEKIIEILK
>NZ_CP007062.1|WP_008702371.1|1776880_1777864_+|NAD(P)-dependent-oxidoreductase
MKVLLTGATGFLGKYVIDELKNNSYQVVAFGRNEKIGHTLIDENVEFFKGDIDNLDDLFRASQDCSAVIHAAALSTVWGRWEDFYNVNVLGTKNVVQVCEEKNLKLVFVSSPSIYAGAKDQLNVKEDEAPKENDLNYYIKSKIMAENIIKSSNLNYIIIRPRGLFGIGDTSIIPRLLDLNKKIGIPLFVDGKQKIDITCVENVAYALRLALENNQYSREIYNITNDEPIEFKEILTLFFNEMGTEGKYLKWNYNLISPLVSFLEIFYKFFGIKKEPPITKYTLYLMRYSQTLNIDKAKRELGYYPKMSILEGVKKYVEHSRKNDRES
>NZ_CP007062.1|WP_008702372.1|1776021_1776795_+|SDR-family-oxidoreductase
MEKILITGASSGIGKELAKYLANKSKKLFLLARSLDKLNLLKKELEEKYSSLKCICIKYDLTNINNLENIVEICDVDLVINCAGFGKITDFSKLSDKEDLDTINVNFISPLILTKKFSERFLQKGQGIVLNVCSTAALYQHPYMAIYSSAKSALLHYSLALDEELSYKNKNVRVLSVCPGPTASNFFDKDIQEKFGSSQKFMMSSEDVAKKIIKVLENKKRFSIIGFRNKLSMFLINLLPISLQLKLVGLILKKVIK
>NZ_CP007062.1|WP_016361414.1|1775018_1775912_-|hypothetical-protein
MFRLKSSFYLLMIYFLFNFSLNSFSSEIKIPKKIYGITIDDGWYDEVKTEDIIEGIKKLPVKPTVRIVMSKDIKAKDYVSLFKEIHKVAYIMAQPVDSFEMNTYKNVESYKNRFEDSYKYLKDYVDIWEIGNEVNGEEWIKENPKFTAKKIYSAYKFIKNKNGVTALTPYYFLPEENKISMENWLKKYIPADMKNELDYIFISYYEDDNDGFQPKWEDIFKNLEKTFPNSKLGIGECGNTAKNATNQSKIKMINHYYTMPKYTANYVGGYFWWYWVQDCIPYKNNEVWSEIYKNMKN
>NZ_CP007062.1|WP_008702375.1|1774084_1774852_-|DeoR/GlpR-transcriptional-regulator
MLSMERYQYIINYLEENGNSTRKELAELLNVTTMTIGRDFKKLEEKGLLIQTHGGAVLPGFLMEERKYDRKKEEHREIKRKIAKKIFQKICSNMTIILDAGTTTYELASLLKNSSLKNICVITNDLYIALELYQKKEIKVLLLGGEVLSETGSTATIFSLQQIEGYNADIAFLGVSSISETFDLTVPTEVKAFLKRTMMKISKESILLVDSSKFQKKKLYKFANLKNFDYIVTDYIFSKEEIEKYHLKKKVINIK
>NZ_CP007062.1|WP_008702376.1|1772787_1774065_-|four-carbon-acid-sugar-kinase-family-protein
MQKYIVIADDLTGSNATCSLLKKIGLRAASILKLQNGMKYDADVISYSTGSRGLDKEEAYKRVSEAIKILKDKNVLVYNKRIDSTLRGNIGAEINAMLDNLENDRIAVVVPAYPDSKRIVVNKTMLVNGVLLENSDAGKDPKTPIKTSCVETLIQKDCKYSSTYFELADIEQPIEKLIKKIQKSTEKSRVLIFDAVNNEDIIKISRAIIQSNINIITVDPGPFTLYFSKELQKKKHLEKKILMLIGSVTETTKKQIEYILQEEDIFLVKMKAESFFEKESCIKEIERVISFIKKGIESYELFLITTSPIGDEKKLDLKKIAHKLNTTVEDVSKIIANTLTETAVRVLKETQKFEGVYSSGGDITIALLEKLKAIGVEIREEVIPLAAYGRIIGGDFSNLKLVSKGGMVGDETVIKLCLHKMKNDI
>NZ_CP007062.1|WP_008702377.1|1771757_1772756_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MRTKIAIPMGDPAGVGAEIIVKTAVSNEILNLCDLVVIGDKNVLEKAIEICKVDLKIHTIKNVEDGKYEKGVLNVIDLQNIDMDSLEYGKIQGMCGKAAFEYIKKSVELAMAHKVDAIATTPINKESLKAGNVNYIGHTEILGDLSNSKDPLTMFEVDNMRVFFLTRHMSLRNACDAVTKERVLEYIKRCTKALKQLGVSGKMAVAGLNPHSGEHGLFGNEEVKEITPAIEEAQKLGYDVVGPIGADSVFHQALQGRYVAVLSLYHDQGHIATKTYDFERTIAITLDMPILRTSVDHGTAFDIAGKGIVSAVSMIEAVKLAAKYAPNFKNIK
>NZ_CP007062.1|WP_005908527.1|1784369_1784795_+|hypothetical-protein
MKKFLLTLMLLGAVSAVAATKSAKAQYPDGTYRGVYISSQETQVELQFDLKNDVITKINYRTLQYKGHDWLNEDEYKAKNGGYMKLLERITNKKVQDVMPTMYNSEEIEKGGATVREMKVRSALQYGLNLGPFKLPKKEAK
>NZ_CP007062.1|WP_008702362.1|1784953_1785364_+|methylaspartate-mutase-subunit-S
MAKKKIVIGVIGSDCHTVGNKIIHSKLEENGFDVINIGVLSPQIDFINAALESNSDAIIVSSIYGYGELDCQGIREKCDEYGLKNILLYIGGNIGSSSEEWEKTEKRFKEMGFDRIYKPGTPIEETIIDLKKDFQL
>NZ_CP007062.1|WP_008702361.1|1785498_1786887_+|hypothetical-protein
MSTSIYLTIDFGSTYTKLTAIDLDKGEIVATSRAMTTVKTDVLVGFNEAFEELKKDLVKKLKNYKIVKKVACSSAAGGLKIIAIGLVPELTTEAAKKAALSSGARVIKTYAFNLTDKDIKEISNLPYDMLLLTGGTNGGNREYILNNAKILAKNNIEKPIVVAGNEEVSEQIIEIFKNNNIECYKSENVMPVVNKINVLPVKEVIREVFMRNIVKAKGMENVQKIVGDIIMPTPTAVMKAAEIFSKDDNNTIVIDIGGATTDVHSIGKGLPKTNDIQLKGMEEPYSKRTVEGDLGMRYSALALYEAASLNKIREYLGSKDSKINIRENFKFRQENPDFVAETEDDIVFDEMMAMLCAEIAMNRHVGTLESIFSPMGTLFVQNGKDLTDVKYVIGTGGIINNSRNPRKILDLTLFNEDNPLLLKPKYPKFLVDKTYIMSAMGLLANDYPDIAYQIMKKYLVEI
>NZ_CP007062.1|WP_008702360.1|1786901_1788359_+|methylaspartate-mutase-subunit-E
MSVTFKKIDKKDFLEIRNNFLESYKYLADFDLETAFRFHKSLPDYKNFQKKLEKSIQNNKVMTQAYSKETLLEDLIKNLNTFHRVGQADFLSVIIDSHTRENHYDNAKIALEDSIKSNKSLLNGFPLVNYGVKLARKIINDVEVPLQIKHGSPDARLLIEMALLAGFSAFDGGGISHNVPFTKSISLKESLENWRYVDRLVGLYEENGIRINREIFSPLTATLVPPAISNSIQILETLLAVEQGVKNISVGVAQYGNITQDIASLLALKEQVQFYLDTFSFKDINISTVFSEWIGGFPEEELKAYSLISYSATIALFSKANRIFIKNIDEYSKNSLGNTMINSLLLTRTILEIGNCQKMNNSEDIILEKEQIKKETAQIITKVFSICNGDLGKGIIKAFEDGIIDIPFAPSKYNLGKMMPARDNEGMIRYLDIGNLPFCHLIKDFHQKKIKERSNKENREINFQMTIDDIFAMSQGKLLNKKSRD
>NZ_CP007062.1|WP_008702359.1|1788410_1789076_-|CoA-transferase-subunit-B
MEMDKKLVREIIAKRVAQEFHDGYVVNLGIGLPTLVANYVGDMDVIFQSENGCIGVGPAPEKEKEDPYLVNAGGGYITAAKGAMFFDSAYSFGIIRGGHVDATVLGALEVDEKGNLANWMIPGKKVPGMGGAMDLVVGAKHVIVAMEHTSNGAVKILKECKLPLTAVGVVDLIITEKAVFEVTDKGLVLKEITPYSSLEDIKATTATDFALTDELKKQLNI
>NZ_CP007062.1|WP_008702357.1|1789093_1789747_-|CoA-transferase-subunit-A
MRQKLVSMEEAISHIKDGMTVHIGGFLACGTPESIITALVEKGVKDLTIVANDTGYVDRGIGRLVVNNQVKKVIASHIGTNPETGRRMQSGEMEVELVPQGTLAERVRAGGYGLGGILTPTGLGTIVQEGKQIINVDGKDYLLEKPIKADVALLFGSKVDELGNVICEKTTKNFNPLMATAADLVIVEALEVVPVGSLSPEHLDISRIFIDYIVKSK
>NZ_CP007062.1|WP_008694348.1|1789869_1791246_-|short-chain-fatty-acid-transporter
MESVKEKKGLFKRFTSMCVRVMERWLPDPFIFCALLTFIVFIGAIFLTKATPLQVIGFWADGFWNLLAFSMQMALVLVTGHTLASSKLFKKMLSTFASGIKGPKQAILIVSIVSGIACALNWGFGLVIGALFAKEIAKKVKGVDYRLLIASAYTGFLVWHGGLSGSIPLQLASGGEGLAKQTAGVVTEAIPTSQTLFSPMNIFIVVGLLIIVPLLNMAMFPSKDEVVEVDPKLLTEPEEVVLDTSKMTPAERIENSRVVSILLSIMGFIYIGYYLITKGFALNLNIVNFIFLFLGILLHGTPRRYLNALAEAIKGAGGILLQFPFYAGIMGIMVGVDGDGMSLAKLMSNFFVNISTPKTFPVFSFISAGVVNFFVPSGGGQWAVQAPIVMPAGQAIGVSAAKSAMAIAWGDAWTNMIQPFWALPALGIAGLGAKDIMGYCLIVTVVSGLFICTGFLLF
>NZ_CP007062.1|WP_005909975.1|1791498_1792620_-|hypothetical-protein
MKKLALVLGSLLVVGSVASAKEVMPAPTPAPEKVVEYVEKPVIVYRDREVAPAWRPNGSVDVQYRWYGETENKTKSEDTDKDWANSKNNVSRLQTTANVNFTKNQTLDVRVRNYQTLRGTKGDGASDEYRIRHFYNFGNLGSSKVKATSRLEYKQKSNDGAKHAEASVLFDFADYLFSNNFFKVEKFGLRPGYAHNWSGHSNGGEGREYVTFDGYNGGTNNKYFLNFESEYTLPLGFSAELNVYNGYDRYQGSFASSKGNKKGQYYGALEAYLYQHTPLYKNNGVELSFDFEGGYDPYTWHQYKVIANGSGYERASYELYMLPTFQVSYKPTDFVKLYAAAGAEYRNFAVTNNSEAKNWRWQPTAWAGMKVTF
>NZ_CP007062.1|WP_050977179.1|1792857_1794258_-|Na+/H+-antiporter-NhaC-family-protein
MMDGFDALLAAPIATIYASFIAMILTKQKFNGIVDNAIDNVKEIQVALFILMAAYAMAEAFMSTGVGASLILIALKVGITAKTVAVIGAIVTSILSIATGTSWGTFAACAPIFLWLNHIVGGNILLTTAAIAGGACFGDNIGLISDTTIVSSGIQKVEVVRRIRHQGVWSALVLLSGIIVFAIVGFTMDLPSTVGDPAEAINSIPADVWTALAEKRESAVKLLEQVRSGVPLYMAIPLVIVLVLAFMGTQTFICLFAGLFFAYIFGMMAGTVTSTMDYLDMMMGGFASAGGWVIVMMMWVAAFGGIMKSMNAFEPISKLLSRISGSVRQLMFYNGLLCVFGNATLADEMAQIVTIGPIIKEMVEDNVEGSEEDLYTLRLRNATFSDAMGVFGSQLIPWHVYIAFYMGIATIVYPLHTFVAVDIIKYNFIAMIAVASILILTLTGLDRFIPLFKLPSEPAVRLKKQN
>NZ_CP007062.1|WP_008702354.1|1794574_1795198_-|amino-acid-transporter
MEKYLQGFLMGLAYVAPIGVQNLFVINSAITQKRSKALLIALIVIFFDITLAFACFFGIGLLIDKLEWLKLIILLVGSLVIIYIGQGLLRSKSELKKNNNMDIPILKAITSACVVTWFNPQAIIDGTMMLGAFRATLSSEAGIHFILGVTSASFCWFMGLSIFISLFSHKFNNKVLRVINIVCGIVIIFYGLKLLLNFYKIFIHYIY

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Crispr_ID: NZ_CP007062_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_5

2026921-2027064

Orphan

Consensus_repeat	Method
TAGTTGGTGCACTTGGTG	CRT
ATTCCTATATTTATAGTTGGTGCACTTGGTG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP007062_5

>merge|NZ_CP007062|5|2026921-2027064|CRT,CRISPRCasFinder
ATGGTGTTATACTTGGTGGTTGAATTCCTATATTTATAGTTGGTGCACTTGGTGTACTAGGACTAGTTGGCACAACGTTAATAGTTGGTGCACTTGGTGCACTTGGTGCTGTTATTCCTATATTTATAGTTGGTGCACTTGGTG

>NZ_CP007062|5|2|2026921-2027064|CRT
ATGGTGTTATACTTGGTG	GTTGAATTCCTATATTTA
TAGTTGGTGCACTTGGTG	TACTAGGACTAGTTGGCACAACGTTAA
TAGTTGGTGCACTTGGTG	CACTTGGTGCTGTTATTCCTATATTTA
TAGTTGGTGCACTTGGTG

>NZ_CP007062|5|5|2026944-2027064|CRISPRCasFinder
ATTCCTATATTTATAGTTGGTGCACTTGGTG	TACTAGGACTAGTTGGCACAACGTTAATAGTTGGTGCACTTGGTGCACTTGGTGCTGTT
ATTCCTATATTTATAGTTGGTGCACTTGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_008693173.1\|2029709_2030792_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP007062.1\|WP_016361452.1\|2035967_2037032_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|340818
NZ_CP007062.1\|WP_005905257.1\|2038337_2039423_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP007062.1\|WP_016361453.1\|2037039_2038338_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|223842
NZ_CP007062.1\|WP_008702118.1\|2012464_2014018_-\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405
NZ_CP007062.1\|WP_008798599.1\|2032142_2032850_-\|FtsQ-type-POTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224505
NZ_CP007062.1\|WP_008702121.1\|2009670_2011203_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP007062.1\|WP_008702123.1\|2007396_2008461_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP007062.1\|WP_005910730.1\|2030814_2032146_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP007062.1\|WP_008795097.1\|2034580_2035963_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|223844
NZ_CP007062.1\|WP_016361449.1\|2015661_2016420_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP007062.1\|WP_008702120.1\|2011282_2011867_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702116.1\|2015296_2015665_-\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP007062.1\|WP_080583035.1\|2014138_2015191_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP007062.1\|WP_016361451.1\|2028138_2029557_-\|AspT/YidE/YbjL-antiporter-duplication-domain-containing-protein	unknown	unknown	gnl\|CDD\|225532
NZ_CP007062.1\|WP_005910744.1\|2008541_2009519_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP007062.1\|WP_008702109.1\|2032862_2033726_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP007062.1\|WP_008702108.1\|2033738_2034584_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|223882
NZ_CP007062.1\|WP_025407253.1\|2011884_2012478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_005910750.1\|2006796_2007321_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236892

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_008693173.1\|2029709_2030792_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	6.19785e-168
NZ_CP007062.1\|WP_016361452.1\|2035967_2037032_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|340818	cd03785, GT28_MurG, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. MurG (EC 2.4.1.227) is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	6.39865e-117
NZ_CP007062.1\|WP_005905257.1\|2038337_2039423_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	8.29475e-149
NZ_CP007062.1\|WP_016361453.1\|2037039_2038338_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|223842	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].	5.66635e-153
NZ_CP007062.1\|WP_005910750.1\|2006796_2007321_+\|hypothetical-protein	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0.00958101
NZ_CP007062.1\|WP_008798599.1\|2032142_2032850_-\|FtsQ-type-POTRA-domain-containing-protein	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	1.02101e-13
NZ_CP007062.1\|WP_008702121.1\|2009670_2011203_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP007062.1\|WP_008702123.1\|2007396_2008461_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.17886e-138
NZ_CP007062.1\|WP_005910730.1\|2030814_2032146_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	3.74988e-94
NZ_CP007062.1\|WP_008795097.1\|2034580_2035963_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|223844	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane].	0
NZ_CP007062.1\|WP_016361449.1\|2015661_2016420_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	5.8792e-118
NZ_CP007062.1\|WP_008702118.1\|2012464_2014018_-\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	3.9091e-30
NZ_CP007062.1\|WP_008702116.1\|2015296_2015665_-\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	4.03377e-43
NZ_CP007062.1\|WP_080583035.1\|2014138_2015191_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP007062.1\|WP_016361451.1\|2028138_2029557_-\|AspT/YidE/YbjL-antiporter-duplication-domain-containing-protein	gnl\|CDD\|225532	COG2985, COG2985, Predicted permease [General function prediction only].	9.70714e-135
NZ_CP007062.1\|WP_005910744.1\|2008541_2009519_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	4.87759e-175
NZ_CP007062.1\|WP_008702108.1\|2033738_2034584_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|223882	COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane].	9.24409e-117
NZ_CP007062.1\|WP_008702109.1\|2032862_2033726_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	9.77679e-115

>NZ_CP007062.1|WP_016361449.1|2015661_2016420_-|TatD-family-hydrolase
MKIIDSHVHLNLEQFDGDREEVFKRIEEKLDFVVNIGFDLESSEKSVEYANKYPFIYAVIGFHPDEIEGYSEEAEKKLEELSKNPKVLAIGEIGLDYHWMTRPKEEQWKIFRKQLELARRVNKPVVIHTREAMEDTINILNEFPDIKGILHCYPGSVETAKRMIDRFYLGIGGVLTFKNAKKLVDVVKEIPIEKLVIETDCPYMAPTPYRGQRNEPIYTEEVAKKIAELKNMSYEDVVRITNENTRKVFKML
>NZ_CP007062.1|WP_008702116.1|2015296_2015665_-|holo-[acyl-carrier-protein]-synthase
MIVGIGNDIIEIERIEKAISKEGFKDKIYTQRELENIKKRGNRAETYAGVFSAKEAISKAIGTGVREFSLTDLEILNDDLGKPYVVVSEKLDKIIKSKKEDYQIEISISHSKKYAIAMAIIL
>NZ_CP007062.1|WP_080583035.1|2014138_2015191_-|peptide-chain-release-factor-2
MKTLGGLFDLEKRKSTIKELEKLTFEENFWSDKRKSSEIIKNMNFEKNIVSRYEKLATEIEDEEVLIDFVESGETSFESELSEKHKILKNDVEEFEINLLLDGEYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKNYKVTELDFMEGDSVGVKSVTFLVEGINAYGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDENVEVEIDPADIRIDTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQKERSQLSNRETAMKMLKSKLLELEIKKKEEEMKKIQGEQSDIGWGNQIRSYVFQPYALVKDHRTNTEIGNVKAVMDGSIDDFINSYLRWIKSN
>NZ_CP007062.1|WP_008702118.1|2012464_2014018_-|toxin-antitoxin-system-YwqK-family-antitoxin
MKKVLNILLIALILTILWILFLVMKPSSSDVQGIKSVKTKYDKYYAEIDKKIESEFDKNPQKLYEERRNSLRKLNLNLGFNRVVKYLGDDKYIFGFTRNGKLIFVLKKDKPDSDNGVVKYLYDNQSLKEIGYVEGKNFDFSGKVQFFDEEGILRNEYQYYKGKLEGLEKVFSEDGKLEEERVYKNNLIDGEEVYYYENGKVAEKGQYVAGKRNGLSVDYYESGKLYSEKTYKNDLLNGNYKIYYENGETKEEAYLKNDKLEGISKIYYESGKIHQIAHNKNDKKNGSLVVYYENGKPEREMNFKNDILDGFEISYYESGKVKTRIFHKNGKPQGEGLSFYESSKLKEKGYYKDGILDGQYIMYYEDGKLQEVYNYIAGILNGEYKLYYENGKLQENGNYIDNNLEGKVSMYYESGKLEWEYNYIKGKLEGEYKNYYENGKLERTGNYKNGLLEGEAVFYFEGGQIGEKASFINGEEEGNHLYYDKTGKLIKKEVYSNGNLLSTEEFQKVEEDNDEGN
>NZ_CP007062.1|WP_025407253.1|2011884_2012478_-|hypothetical-protein
MKEIRVKPLEADNKEGKIMAYIFFFQPILCVIVASFIIYMNKELFRLDLVAQIAIGVFILLAISAFFTNMPNIANNVLAEEVCYIKNKIFYYTKTRNFFGIKKVIKSFEIPIAEISDIRENKEKIKVNIFSIFKARNSLEIETREGKKYSIMNDFHLSGKHSQDDMKIETREERAKRIFNEVKELVMEAKNMNTFNF
>NZ_CP007062.1|WP_008702120.1|2011282_2011867_-|hypothetical-protein
MKVKELKINPVPEKKSLRFVVHWLMMMPILPFIFLGIIYYVIDKKILDDLYQQILENKGYFCIFVFYWLFAAINLAREIFSYLLVEEVCYVENKVFYYQKFRIAFGMRKLMKKLEIPLSEILEVKEGKKPFFLCFLYSIITHRNAVEIETRDGKKYKIMNSVVFGDKDSQNPNSSETNERANKIYNEVKNMILK
>NZ_CP007062.1|WP_008702121.1|2009670_2011203_-|glutamate--tRNA-ligase
MCDNCKKRVRTRVAPSPTGDPHVGTAYIALFNIAFAHVNGGDFILRIEDTDRNRYTAGSEQMIFDALKWLDLNYSEGPDVGGDYGPYRQSERFDLYGKYAKELVEKGGAYYCFCDHERLENLRERQKAMGLPPGYDGHCRSLSKEEIEEKLKAGVPYVIRLKMPYEGETVIHDRLRGDVVFENSKIDDQVLLKADGYPTYHLANIVDDHLMGITHVIRAEEWIPSTPKHIQLYKAFGWEAPEFIHMPLLRNNDRSKISKRKNPVSLIWYKEEGYLKEGLVNFLGLMGYSYGDGQEIFTLQEFKDNFNIDKVTLGGPVFDLVKLGWVNNQHMKLKDLGELTRLTIPFFVNEGYIDNENVSEKEFETLKKIVEIEREGAKTLKELAKNSKFFFVDEFSLPEVKEDMDKKERKSVERLLNSLKDEVGLKSIKLFIEKLEKWEGNEFTAEQAKDLLHSLLDDLQEGPGKIFMPLRAVLTGATKGADLYNILYVIGKERALKRIKDTVKKYNIAL
>NZ_CP007062.1|WP_005910744.1|2008541_2009519_+|tryptophan--tRNA-ligase
MKRSLSGIQPSGILHIGNYFGAMKQFIDLQDDYDGFYFIADYHSLTSLTKAETLKENTYNIVLDYLAIGLDPNKSTIFLQSNVPEHTELTWLLSNITPVGLLERGHSYKDKIAKGIPSNTGLLTYPVLMAADILIYDSDIVPVGKDQKQHLEMTRDIAMKFNQQYEVEFFKLPEPLILDDSAIVPGTDGQKMSKSYNNTINMFATKKKLKEQVMSIVTDSTPLEEPKNPDNNIAKIYALFNNIDKQNELKEKFLAGNFGYGHAKTELLNSILEYFGKAREKREELEKDIDYVKDVLNEGSKKARAIAIEKIKKAKEIVGLIGNIY
>NZ_CP007062.1|WP_008702123.1|2007396_2008461_+|alanine-racemase
MRTWVEIDKENLKYNVLKLKEIANNREVLGVVKANAYGLGSVEITKILQEIGVNFFGVANLEEAIELQEAGIKDKILILGASFEDELIEATKRGVHVAISSMGQLQFLVNNKLNPNIHLKFDTGMTRLGFEVDEAKKVIEFCKNNNLNLVGIFSHLSDSDENTVETKNFTLEQIEKFKKIVNSLNLKYIHISNSAGITNFQNDIVGNLVRMGIGMYSFTGNKKTPYLKNIFTIKSRVLFIKKVKKDSFVSYGRHYTLPADSTYAVLPIGYADGLKKYLSKGGYVLINNHRCEIIGNICMDMTMIRIPKEVENSVKIGDEVTVINADILDNLNIPELCVWEFMTGIGKRVKRIIV
>NZ_CP007062.1|WP_005910750.1|2006796_2007321_+|hypothetical-protein
MNKNKIILFLISLFALTACSSINEYLPSFLTEGSTPAAIQEAVSSRVNPEKEIYVLSSAQLSKSGSIIAQSRANKQASEALRGKVKSEVEAQIRGYLEDMDAFSKSIVSPVFSDLATYSTDLAMKKVTQKGAWEDSEKVYSLLAVDRNEVITITDKVFRNFVDNASKNLGNSTK
>NZ_CP007062.1|WP_016361451.1|2028138_2029557_-|AspT/YidE/YbjL-antiporter-duplication-domain-containing-protein
MHFDVVGFIFNSLVLLFFTMTLGNLFGNVKFRKFNFGITGTLFIGLFVGYFLTKYAVTIPEESKYFSKAQNVLKGNVIDNSIMNLSLLIFIVGTGLLAAKDMKYAITKFGKQFVIIAIFIPFVGAVASYGFSQIFSKMSPYQITGTYTGALTSSAGLAAATESSEAESRHLASEFQGLSEGTKIKILAIINNAKERDAKLKNEDIPEKMTIENTTTLSAEDTEVYVTEAKAGVGVGHSIGYPFGVLFLILGINFIPKIFRFDVEKEKEKYFAQKKIDLSKDKDAGKNTIPEVKMDFVGFSVAAFLGYFLGGIKISMGPLGTFSLGSIGGAIIVALLLGFIGKIGPITFRMDSVVLGKMRTYFLSIFLAGTGLNYGFRVVEAVTGDGIMIAVVSALVAILSVLFGFLLGHYVFHINWTLLSGAITGGMTSAPGLGAAIDALDCDEPAVSYGATQPLATLCMVIFSIIIHKLPI
>NZ_CP007062.1|WP_008693173.1|2029709_2030792_-|cell-division-protein-FtsZ
MTDAIKDLVKIKVIGVGGGGGNAINDMLYSGVTGVEYIAANTDKQDLEKSLADVKLQIGEKLTKGQGAGASPEVGRQAAEEDIEKIQELLKGTDMLFITAGMGGGTGTGAAPVIAKAAKELDVLTVAVVTKPFNFEGERRKNNAESGIELLRQNVDSLVIIPNDKLFDLPDKSITLQNAFKEANNILRIGIKAVVDLVLGQGFINLDFADIKSVLKDSDIAVLGFGDGEGENRAMKAAEKALQSPLLEKSIQGADKILINLMTSQDVGLSESQTVTDVIRQAAGKKIEDVMFGVTIVPEFTDRIEITIIANNFKEGVESNSDSPIKMGTGKVAESSKQTESKEDPDDVFDIPPWMRNNKR
>NZ_CP007062.1|WP_005910730.1|2030814_2032146_-|cell-division-protein-FtsA
MKDDVIKKVALDIGNNGIKLLVGEMSSDFQRISVTNYVKTKSKGISKSLIENPEALAETLREAIGKAESIESPITKLSLALGGPGILSATVNVKSSFPEKEIEKTDMDNLLRQAKRQIFKGREGQYRILYKEVYNKKLDNSGIVRQPIGMVGKELQADIHLVYVDDSYVQKFIQVVNKIGIDIDRIYLNSYASAKGTLDEETKKMGVAHVDIGYGSTSIVILKSGKVLYAKTKPIGEMHYISDLSIMLKIPKEGAEEILKKLKNKQVEADNTIRYGAKKVTLREIKDIILARTGDIINFIGSAIDESGFNGVLAKGIVLTGGAVEIEGVAEQIATRSGYLTRKMLPIPLKGLKDAFYSDAVVIGVFLEDMEREYKASIEETKEANKVKKEKIKEETTSNNKINDKKMDRKEEIDNFLGEIEEVEPEKEEGKIRKVIRWFGELF
>NZ_CP007062.1|WP_008798599.1|2032142_2032850_-|FtsQ-type-POTRA-domain-containing-protein
MGIRLLFLSGIIYLIYMLPQNFFRLDYFNINKVNVTDNSKMLHDELTKLTEKLYNKNSIYIDSNEIKEFIEKDIRVESATVEKKSLGEIDIDVKEKDLAYYAVIGKNIYLTDKEGKIFAYLNEKEVEGVPFIIANNEEEIKEISEFLNEISDLAIFKKISQIYKVNDKEFIIILTDGVKIKTNRAKDNDEISKEKENKRYLIAEQLYFNMSKERKIDYIDLRFNDYIIKYLGDSK
>NZ_CP007062.1|WP_008702109.1|2032862_2033726_-|D-alanine--D-alanine-ligase
MKIAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLHGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAYRTVEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLARPIIEDYIVGEELTVGVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFGMKGISRSDFILSDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVETFLK
>NZ_CP007062.1|WP_008702108.1|2033738_2034584_-|UDP-N-acetylmuramate-dehydrogenase
MKVFTNQEMKNYSNMRVGGRAKKLIILETKEEIVDVYNDKENTNIFILGNGTNVLFTDDYMDRTFVCTKKLNKIEDLGNNLVKVETGANLKDLTDFMKDKNYTGIESLFGIPGSIGGLVYMNGGAFGTEIFDKIVSVEVFDENHQIREVKKENLKVAYRKTEIQDKNWLILSATFKFDNGFDESRVKEIKELRESKHPLDKPSLGSTFKNPKGDFAARLISECGLKGTIIGNAQIAEKHPNFVLNLGGATFKDITDILTLVKKSVFEKFGIKLEEEIIIVK
>NZ_CP007062.1|WP_008795097.1|2034580_2035963_-|UDP-N-acetylmuramate--L-alanine-ligase
MEKIYFIGINGIGMSGLAKIMKCKGYDVKGADICTNYVTEELLSMGITVYNEHDEENVKGSDYVIASTAIKENNPELSYAKNNGITLLKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGKSEYFIAEADESDNSFLFMYPKYSVITNIDADHLDVHGNLDNIKKSFIKFICHTQKEAIICMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSLNIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDKDLENGYGNKTKRVRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVILLPIYAAGEKNEFNISSEILKEHINHNNVENMNEWKDVKRYVSRVKKDSTYIFMGAGDISTLAHQIAEELEGMSE
>NZ_CP007062.1|WP_016361452.1|2035967_2037032_-|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MKKVMLTTGGTGGHIYPALAVADKLKLKGVDTVFVGSTERMEKDLVPDSGHKFIGLDISVPKGFKNIRKYLKAIRAAYKVIKEEKPDAIIGFGNYISVPVIIAGILLRKKIYLQEQNVNIGSANKMFYKIAKMTFLAFDKTYDDIPIKSQSRFKVTGNPLRKEIDGLRYTTEREKLGIKPGEKVLLITGGSLGAQEINNIVMKYWEKFCANKNIRIFWATGNNFEQLKKVRKSKKENDRIEPYFNDMLNVMAAADLIVCRAGALTISEIIELEKPSIIIPYGSIKVGQYENAKVLTDYNAAYVFTRDELDDSMKKVFEIIRNDEKLKKMRIRLKPLRKPNAAEEIIASLDIWRN
>NZ_CP007062.1|WP_016361453.1|2037039_2038338_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKKAMIYGLGISGTGAKELLEKEGYEIIVVDDKKAMTSDEALNYLDGIEFFIKSPGIPYNNFVKEVQKRKIKILDEIEIAYNYMIEKGMKTKIIAITGTNGKSTTTAKISDMLNYAGYKAAYAGNIGRSLSEVLLKEKDLDFISLELSSFQLENIENFKPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIENIDDVEIEKRAKQVKAKRISVSKFKKADIFVENDKICHGKDSIIDVDKLSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKLKFINDSKATNVDSTKFAIEANKNSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADKIESELKKVGYEDSKIHKLVNLENSLQDMKKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKELVLKIFG
>NZ_CP007062.1|WP_005905257.1|2038337_2039423_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYFLAEYFTKLEFLKSIYLRAFLAFVISFFIVLFVGKPFIKYLKVKKFGEEIRDDGPSSHFSKKGTPTMGGVLIIAAVLLTSLFINDLKNPLVLLVLLSTLMFAGIGFIDDYRKFKVSKKGLAGKKKLLFQGIIGLVIWAYIYFVGLTGRPMVDLSLINPISSHQYYIGAIGMFFLIQIVLMGTSNAVNITDGLDGLAIMPMIICSTILGVIAYFTGHTELSSHLHLFYTVGSGELSVFSAAVTGAGLGFLWYNCYPAQIFMGDTGSLTLGGILGVIAIILKQELMLPIMGFIFVLEALSVILQVGSFKLRGKRIFKMAPIHHHFELMGIPESKVTMRFWIGTLIFGIIALGTIKMRGIL

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Crispr_ID: NZ_CP007062_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_6

2050355-2050755

Orphan

Consensus_repeat	Method
CTTTATTTCCTATTCCANNTACT	CRT

9 spacers

The CRISPR arrays of NZ_CP007062_6

>merge|NZ_CP007062|6|2050355-2050755|CRT
CTTTATTTCCTATTCCAGCTACTTTGTTATCATCGCCAGCTGCTTTATTTCCTATTCCAGCTACTTTGTTATCATCGCCAGCTGCTTTATTTCCTATTCCAGCTACTTTGTTATCATCACCAATAGCTTTATTTCCTATTCCAGCTACTTTGTTATCATCGCCAGCTGCTTTATTTCCTATTCCAGCTACTTTGTTATCATCGCCAGCTGCTTTATTTCCTATTCCAGCTACTTTGTTATCATCACCAGCTGCTTTATTTCCTATTCCATTTACCAGATTTTCAGCTCCGGCTACTTTATTTCCTATTCCATTTACTAAGTTTTTAATTCCTGTTGTTTTATTTCCTATTCCATTTACTAGGTTTCTACTTCCAGCTGTTGTATTAGCTACTCCGTTTACT

>NZ_CP007062|6|3|2050355-2050755|CRT
CTTTATTTCCTATTCCAGCTACT	TTGTTATCATCGCCAGCTG
CTTTATTTCCTATTCCAGCTACT	TTGTTATCATCGCCAGCTG
CTTTATTTCCTATTCCAGCTACT	TTGTTATCATCACCAATAG
CTTTATTTCCTATTCCAGCTACT	TTGTTATCATCGCCAGCTG
CTTTATTTCCTATTCCAGCTACT	TTGTTATCATCGCCAGCTG
CTTTATTTCCTATTCCAGCTACT	TTGTTATCATCACCAGCTG
CTTTATTTCCTATTCCATTTACC	AGATTTTCAGCTCCGGCTA
CTTTATTTCCTATTCCATTTACT	AAGTTTTTAATTCCTGTTG
TTTTATTTCCTATTCCATTTACT	AGGTTTCTACTTCCAGCTG
TTGTATTAGCTACTCCGTTTACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_008702076.1\|2053662_2054241_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP007062.1\|WP_016361454.1\|2039662_2041486_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	unknown	unknown	gnl\|CDD\|223841
NZ_CP007062.1\|WP_008702073.1\|2058635_2060408_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|341157
NZ_CP007062.1\|WP_008702089.1\|2045836_2046712_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP007062.1\|WP_005910688.1\|2063786_2064080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702099.1\|2042520_2043012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008795082.1\|2064116_2064704_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008702087.1\|2046712_2046988_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_005905257.1\|2038337_2039423_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP007062.1\|WP_008702075.1\|2054242_2055565_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP007062.1\|WP_008702074.1\|2055576_2058618_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP007062.1\|WP_005910684.1\|2064728_2066060_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP007062.1\|WP_008702071.1\|2062072_2063635_-\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP007062.1\|WP_008702084.1\|2047324_2047585_+\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NZ_CP007062.1\|WP_008702096.1\|2043022_2044777_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|237053
NZ_CP007062.1\|WP_008702068.1\|2066291_2067416_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP007062.1\|WP_008702072.1\|2060632_2062063_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|225420
NZ_CP007062.1\|WP_008702092.1\|2045165_2045681_-\|flavodoxin	unknown	unknown	gnl\|CDD\|180850
NZ_CP007062.1\|WP_008702082.1\|2047602_2048154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_005910709.1\|2044788_2045169_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_008702076.1\|2053662_2054241_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	8.63447e-50
NZ_CP007062.1\|WP_016361454.1\|2039662_2041486_-\|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	4.13456e-139
NZ_CP007062.1\|WP_008702092.1\|2045165_2045681_-\|flavodoxin	gnl\|CDD\|180850	PRK07116, PRK07116, flavodoxin; Provisional.	1.329e-36
NZ_CP007062.1\|WP_008702089.1\|2045836_2046712_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.83331e-11
NZ_CP007062.1\|WP_005905257.1\|2038337_2039423_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	8.29475e-149
NZ_CP007062.1\|WP_008702075.1\|2054242_2055565_-\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	6.48433e-117
NZ_CP007062.1\|WP_008702074.1\|2055576_2058618_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP007062.1\|WP_008702071.1\|2062072_2063635_-\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0
NZ_CP007062.1\|WP_008702084.1\|2047324_2047585_+\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	4.48893e-28
NZ_CP007062.1\|WP_008702096.1\|2043022_2044777_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|237053	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP007062.1\|WP_008702068.1\|2066291_2067416_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP007062.1\|WP_008702072.1\|2060632_2062063_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.95348e-71
NZ_CP007062.1\|WP_008702073.1\|2058635_2060408_-\|restriction-endonuclease	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	4.90614e-83
NZ_CP007062.1\|WP_005910684.1\|2064728_2066060_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	1.43826e-172
NZ_CP007062.1\|WP_005910709.1\|2044788_2045169_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.66765e-51

>NZ_CP007062.1|WP_008702082.1|2047602_2048154_+|hypothetical-protein
MLKIRNKIFTFNKDEEVYMGHLSIWNKETEVHFYGAINRDYEEKLEEKLNWFEKNRLSVIDKFIQEDDVFNSINQMIENKELEINNQKIFSKITEEDFKSSFYIKLVNFEFLQNDITIDSYMGTEPDYLMGHFVNIKITSNFNINIHYTYVLPSLINQAIERNLRKPWKKEDKILIFPYVKKY
>NZ_CP007062.1|WP_008702084.1|2047324_2047585_+|Txe/YoeB-family-addiction-module-toxin
MIKEWSDEAWEEFLEQVIKDRNFLKRIEKILKDIERNRYIGIGKPEPLKYGFSGYWSRRIDNYNRIVYKIENNVLKMAQCGLHYNE
>NZ_CP007062.1|WP_008702087.1|2046712_2046988_+|hypothetical-protein
MFPNILDNAIVYFYTQKRNYGSVFYDNGKIEYIHYLAICSYDNNEYYLFHCNNKFEVIADYIFDSIEECKNMASKCKKDIVWIKNNCNEIY
>NZ_CP007062.1|WP_008702089.1|2045836_2046712_+|DMT-family-transporter
MLRKERIFLFLVLLLAVIRGSSYIFIKNIIDTQSPFEIIFFRFFLTGIILLIFYIKEFKSLNYYDLIFGLLAGIFLFSAFAFQTYGLKYTTVSKQSFLTSLYIVIIPLLDFIFFKNKIKKNVIALFFLILIGLLFISFKDFKNFEFSLNFGDILTILCALGFALNILLFSKIKKFNINVINITIIQMLTIGVLAFIFQIIFEKKVINFSMSFSLIYLILICTMLNFTIQNISQKYVPAHIMGLILSLEAIFGTVFAIIFLNETISQNFIIGTFLIAIAVILIQYFENKRGD
>NZ_CP007062.1|WP_008702092.1|2045165_2045681_-|flavodoxin
MSKKLVVYFSHKGENYSKGKIVNLEKGNTEIAAEMISNILNADIFEIVAEKEYPFNYNECIEIAKKELRENSKIKLKQDIDIKEYDTIFIGYPNWWGTMPMPVWTFLEGKDFTNKKILPFCTHEGSGLGKSESDIKKITSGAKVLKGLAINGSEVNNSEGKIRKWLEEVLE
>NZ_CP007062.1|WP_005910709.1|2044788_2045169_-|MerR-family-transcriptional-regulator
MTIKEVSEQLGITQDTLRYYEKVGMVPPVTRTEGGIRDYQEDDIEWIKLATCMRSAGLPVKVMIDYLNLYKQGDSTIQARCNLLKKQREKLLEQRRQIEETLERLNYKIARYEIAVETGKLTWGKE
>NZ_CP007062.1|WP_008702096.1|2043022_2044777_-|1-deoxy-D-xylulose-5-phosphate-synthase
MYLEKINSPEDVKKLNIEEMKVLAQEIREAIITRDAKHGGHFGPNLGIVEATIALHYVFNSPKDKFVFDVSHQSYPHKMLTGRRQAFTDETHYDDVTGYSNQNESEHDHFILGHTSTSISLALGLVKARDVKEEKENIVAIIGDGSLSGGEALEGLDFAGGELKSNFIIIANDNDMSIAENHGGLYKNLKLLRETDGKAEINLFKAMGLDYIFVKDGNNLKELIEVFKKVKDINHPIVVHICTQKGKGYKLAEIDKEPWHYTMPFNIENGKPLNVDDSEDYTDVTKEYLIKKMKEDKTVVTITSGTPGAVGFNKKDRDEVGSQFIDVGIAEETAVAIASGMVSKGAKPVYTVVSTFLQRTYDQLSQDLCINNNPATIVVYYAGAIGMTDVTHLGWFDIAMMGNIPNLVYLAPTTKEEHLAMLEWSIEQQEHPVAIRIPGGKMVSTGKKVTKDFSKLNIYEVSQKGEKVAIIGLGTFYQLGEKVATLYEEKTGVKATVINPMYITGVDEKLLEELKKDHSLVITLEDGVLDGGFGEKITRFYGNSDMKVLNYGLKKEFLDRYDIGKLLTKNRLKADLIVEDLLKF
>NZ_CP007062.1|WP_008702099.1|2042520_2043012_-|hypothetical-protein
MKKGILIFILAVSASVFGKENLNNVKIVTSSNVITSNFSSTDSNFEKDRKDIMDLYEKFLKNEDNKEELAKITTKDFSLNKVNKTSPKKNEEILKKIEKIDTYSNLEESSSFNIENDKATLTVKKASTSKKEKVNDIESKELKLEFKKVNNKWLIDKAEETIF
>NZ_CP007062.1|WP_016361454.1|2039662_2041486_-|D-glycero-beta-D-manno-heptose-1,7-bisphosphate-7-phosphatase
MKKAIFLDRDGTINVEKDYIYKSEDLIFEEGTIEALKTFKNLGYILIVVSNQSGIARGYFTEEDLNIFNNNMNEILKKNGVEITEFYCCPHHPDGIGEYKKVCECRKPNNKMIEDAIKKYNIDREKSYMIGDKTSDIGAGLKSNLKTVLVKTGYGLKDMEKVDKNETLICENLKDFSEILKREKLNELIFEEFSKKVQIKNVVMDSRKVTEGSLFFAINNGNSYVKDVLDKGASLVIADNTNIKDKRVVKVIDTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNKVGFNENNDYKIESYEFSNKGSKFVLDGKEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIGEDIYINDAYNASPMSMKAAIDTLNEIYNDKYKIAILGDMLELGENEINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNIKMEKVILLKASRGTALEDIIK
>NZ_CP007062.1|WP_005905257.1|2038337_2039423_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYFLAEYFTKLEFLKSIYLRAFLAFVISFFIVLFVGKPFIKYLKVKKFGEEIRDDGPSSHFSKKGTPTMGGVLIIAAVLLTSLFINDLKNPLVLLVLLSTLMFAGIGFIDDYRKFKVSKKGLAGKKKLLFQGIIGLVIWAYIYFVGLTGRPMVDLSLINPISSHQYYIGAIGMFFLIQIVLMGTSNAVNITDGLDGLAIMPMIICSTILGVIAYFTGHTELSSHLHLFYTVGSGELSVFSAAVTGAGLGFLWYNCYPAQIFMGDTGSLTLGGILGVIAIILKQELMLPIMGFIFVLEALSVILQVGSFKLRGKRIFKMAPIHHHFELMGIPESKVTMRFWIGTLIFGIIALGTIKMRGIL
>NZ_CP007062.1|WP_008702076.1|2053662_2054241_-|flavin-reductase-family-protein
MKKRNLKGSVVLNPVPVVLITCKNLEGKDNVFTVAWVGTICSKPPMLSISVRPERLSYGYIKESMEFTINLPTRKQTKEVDFCGVRSGRQIDKIKECGFNLQEGEKVKSSYIKECPINIECKVKDIIKLGSHDMFIADVLCSHIDEDLFDKKDKIHFEKANLISYSHGEYFSLSKEAIGKFGYSVMKKKKKS
>NZ_CP007062.1|WP_008702075.1|2054242_2055565_-|MATE-family-efflux-transporter
MFKKKIFKTIFKYAIPNVISMWIFTLYTMIDGVFISRFVGSTALAGVNLALPLINFIFSISIMIGVGSSTLIAIKFGENRHDEGNKIFTLATFLNLFLGIFISAIILLNIDRVINILGANKSQEVYKYVKEYLMVIVFFSVFYMSGYAFEIYIKIDGKPSYPAICVLVGGLTNLFLDYVFVVIFNYGVTGAAIATGISQVTSCAMLLLYIILKAKYVKFKKLSKINFEKIFKIFRTGFSEFLTEISSGILILIYNLVILKKIGVLGVSIFGTVSYITSFITMTMIGFSQGIQPVISYYLGKKNYKKLKEILKISIVFLGVLGIFCFIFVSLFSECIGKIFFREQDMILYVKRVLKIYSLSYLLIGINIFVSAYFTAIKKVIYSALITFPRGILFNSILLLILPNTFGNKVIWIVSFLSEVLTVFICIYLLKKIKREGILN
>NZ_CP007062.1|WP_008702074.1|2055576_2058618_-|type-I-restriction-endonuclease-subunit-R
MSSVDYNMLISTLESTVVTEYVKEDMPVYTYQSEADLEREFIKNLQNQGYEYLIIHNEKELIVNLKDKLEKLNNIIFSENEWERFFKEKIANKNESIVEKTRTIQEDYIKSFTRDNGTLVNISLIDKKNIHNNFLQVINQYEEENGTHNTRYDVSVLVNGLPLIHIELKRRGVAIREAFNQINRYQRDSFWAGSGLFEYVQIFVISNGTNTKYYSNTTRARHIKEISFNRRKVKKSSNSFEFTSYWADANNKAITDLVDFTKAFFAKHTILNILTKYCIFDTSDTLLVMRPYQISATERILSKIQLANNYKWVGKIDAGGYIWHTTGSGKTLTSFKTAQLASQLDYIDKVLFVVDRKDLDSQTQKEYDRFSKGSANGNTSTKILKAQLEDRYKNKSKIIITTIQKLGHFIKQNKNHEVFKKNIVLIFDECHRSQFGELHLAITKTFKNYFMFGFTGTPIFPKNSNGSSKTLFKTTEQTFGDKLHTYTIVNAINDGNVLPFRIDYINTIKEKENIQDKKVNAIDIEKAMSDPIRIREVVSYIIEHFEQKTMRNKHYELKEQRLSGFNSIFAVSSIPVAKKYYLELKKQLEEKNKNLTIATIFSYSANEEENTDNLDDESFDTENLDLGSREFLEEAISDYNKKFGTNFDTSSDGFQLYYEDLSKRTKNKEIDILIVVNMFLTGFDATTLNTLWVDKNLRMHGLIQAFSRTNRILNSIKTFGNIICFRDLQKETDEAIALFGNKEAGGIVLLKTYEEYYNGYEDDKGREKEGYSQLIEELQNKFPIDEQIIGEQNKKEFIILFGNILKLKNILSAFDKFAGNEILSEREYQDYQSVYIDLYEEIKKTKNTDKENINDDIIFEIELIKQVEINIDYIMMKVAEYYKSNKKDKEILVDIKKAINSSIELRSKKELIEGFIDRVNFSKNVTDDFKKFVREEKEKDLEKVIEEEKLKPEETKKFIDNSLRDGILKTTGTDIDKLLPPVSRFGGGNRAEKKLGVIEKLKVFFDKYLGLVI
>NZ_CP007062.1|WP_008702073.1|2058635_2060408_-|restriction-endonuclease
MSKLDELIKELCPNGVEYKELKDLCIIKKGVQLNKEKLLEEAEYPVINGGILPSGYWNDYNVKENTITISQGGASAGYVQYIPTKFWAGAHCYYLELKDKNINYRYIYHFIKMKQDKLTSSQVGAGIPSVEKKILENLLIPVPPLEVQDEIVRILDNFTALTAELTAELTARKKQYSWYRDYLLKFENKIEIVKLKDIAIEMYRGNGIKREEVREIGIPCVRYGEIYTDYGISFKKTKSYTDENLITNKKYIDYGDILFAITGESVEEIGKSTAYIGKEKCLVGGDVLVMKHKQDPVYLSYVLSTENAQKQKSKGKIKSKVVHTNATDIGEIEIPLPPLEVQKRIVEVLDNFEKICNDLNIGLPAEIEARQKQYEFYRNFLLTFKIENCTLPKTRQDKTRQDKTRQDIIKLFMYIFGYIELELGEILKIKNGSDYKKFNIGNIPVYGSGGIINYIDTYIYDKESVLIPRKGSIGNLFYVDKPFWTVDTIFYTVIDKDIVIPKYIYYYLSKVNLEKLNTAGGVPSLTQTVLNKILIPLPPLEEQQKIVDILDRFDKLCNGISEGLPAEIEARQKQYEYFREKLLTFKNIND
>NZ_CP007062.1|WP_008702072.1|2060632_2062063_-|ATP-dependent-DNA-helicase-RecG
MNNRIKFWVSSPENQYLERKSARIEPLNILKHLIAFANADGGSLIIGVEDNGEVTGFNTSKAHKIEEFKNIALTKLKDSPILPKYEILEVKNEKGEEDKILVISVEPAYDRVIKSYDNNVYLRQFDKTEKLNHEQITQLEYDRGQRYFEDEVVEDSSIEDIDLELVESYRKNMNLTNSNLEDILKARNFIKKGFLTNACVLLFAKEPTKYLPQARLKFVRYDGTKAGVGTEINIIKEKTFDKAIPKIITEVKEFIKTQLREFQYLDGEDGTFKSMPEYPEFAWFEGIVNALTHRNYSIRGEYIRFIMFDDRIEIHSPGKLPNIVTIENILTQRYSRNPRIARILSEFGWVKEMNEGVKRIYSEMEKFFLKKPVYSEPSNNVLLVLENNILNRNIRIEDNLKKLIDKDIYKGLNFIEKEIMKFSFMNKKITVADLSKNINKTTVTTRMYLKKLVTLGLLEWHGTNPKDPTQFYSLKK
>NZ_CP007062.1|WP_008702071.1|2062072_2063635_-|type-I-restriction-modification-system-subunit-M
MNSKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGNSDFNYANLSDEDAIVAKEDLIRTKGFFILPSELFINVRKKADKDENLNVTLDTIFKNIENSANGTESESDLKGLFDDIDVNSNKLGGTVVKRNENLVNLINGVGDMKLGDYQENTIDAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNKVYDPACGSGSLLLKFAKILGKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKFDIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILINDSRFSPAGVLAPKSKADLAFIMHSLSWLAPNGTAAIVCFPGVMYRSGAEQKIRKYLIDNNYIDCIIQLPDNLFYGTSIATCIMVLKKSKIDNKILFIDGSKEFVKVTNSNKMTEKHIDDIVEKFTKRENIEYISNLIEYEKIVEENYNLSVSTYVEKEDTSEKIDIFELNKEIQRIVAREEELRKEIDKIIAEIEIK
>NZ_CP007062.1|WP_005910688.1|2063786_2064080_-|hypothetical-protein
MKKGIFAMFILVASMAMVACTNANATNEGAVGENDAFKVLEKRREYYKEQDKERAETQVQTDTVGEGATITTEDEAKAKEEADKEALKILEKKRKGN
>NZ_CP007062.1|WP_008795082.1|2064116_2064704_-|hypothetical-protein
MEKNLEILDRLYNLRYKSGKVHLFHSINKLVGRFGNVVSLDKIYVSKEYLSYLSEKLFKDKDKLISFFGGNNKFVRLSLVHEFMQDFGRDIAQDIKDDFIELKQYNSSVFKEVKERMIILKENENEDITKEDIDLIQRYLTNWKNLQDKIRHFIPEEFYSQKNNYFYTCLLSYIKFFEKLNSDYESGIKYLLAIK
>NZ_CP007062.1|WP_005910684.1|2064728_2066060_-|magnesium-transporter
MEEIVELLEHNRLAELKEILIKENPIDIADVFEEFPKEKDLIIFKLLPKDFSSEVFSYLSPEKQQEVIENITDEEIKFIMEDMYLDDTVDFIEEMPANIVGKILKNVSHDKRKLINQMLKYPENSAGSVMTVEYVSFKDNCTVKQAIDYYRKIAIDKEETDICFVTDSKKKLVGIISLKTLILSNDDSYIKNEMDTNFVSVLTKDDQEEIAALFRKYDLTTMPVVDQEDRLVGVITVDDIVDVIDQENTEDIQKMAAMNPSDEEYLKESVISLAKHRILWLLVLMISATFTGMVIKKYEEVLQSAVYLAVFIPMLMDTGGNAGSQSATLIIRGIALEEIEFSDIFKVIWKEFRVSILVGFILSAVNFVRIYYFTKSGLETSLVVAISMFLTIIMAKVIGGVLPLIAKSMKIDPAIMASPLITTIVDTAALIIYFQLSVIFLHI
>NZ_CP007062.1|WP_008702068.1|2066291_2067416_-|tRNA-guanosine(34)-transglycosylase-Tgt
MKLPITYKIENKDGKARAGVITTPHGEIETPVFMPVGTQATVKTMSKEELIDIGSEIILGNTYHLYLRPNDELIARLGGLHKFMNWDRPILTDSGGFQVFSLGSLRKIKEEGVYFSSHIDGSKHFISPEKSIQIQNNLGSDIAMLFDECPPGLSSREYIIPSIERTTRWAKRCVEAHQKKDSQGLFAIVQGGIYEDLRQKSLDELSEMDESFSGYAIGGLAVGEPREDMYRILDYIVEKCPEEKPRYLMGVGEPVDMLNAVESGIDMMDCVQPTRLARHGTVFTKDGRLVIKSERYKEDTKPLDEECDCYVCKNYSRAYIRHLIKVQEVLGLRLTSYHNLYFLIKLMKDAREAIKEKRFKEFKENFIKRYENKK

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Crispr_ID: NZ_CP007062_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007062_7

2154294-2154379

Orphan

Consensus_repeat	Method
TCTTCAGGTTTTTCCGTTGCCTGCCAACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007062_7

>merge|NZ_CP007062|7|2154294-2154379|CRISPRCasFinder
TCTTCAGGTTTTTCCGTTGCCTGCCAACTGTCATAGCCTGTACATCTATGAATCTGTCTTCAGGTTTTTCCGTTGCCTGCCAACTG

>NZ_CP007062|7|6|2154294-2154379|CRISPRCasFinder
TCTTCAGGTTTTTCCGTTGCCTGCCAACTG	TCATAGCCTGTACATCTATGAATCTG
TCTTCAGGTTTTTCCGTTGCCTGCCAACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007062.1\|WP_008701969.1\|2160276_2161443_-\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|223082
NZ_CP007062.1\|WP_008701971.1\|2155678_2156650_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP007062.1\|WP_008701980.1\|2141187_2151768_-\|autotransporter-adhesin-RadD	unknown	unknown	gnl\|CDD\|380182
NZ_CP007062.1\|WP_008701967.1\|2162842_2163394_+\|lactate-utilization-protein-C	unknown	unknown	gnl\|CDD\|224473
NZ_CP007062.1\|WP_008701985.1\|2139286_2140072_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP007062.1\|WP_016361473.1\|2140052_2141039_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
NZ_CP007062.1\|WP_005910602.1\|2158620_2160048_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP007062.1\|WP_008701966.1\|2163436_2165596_+\|LUD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224062
NZ_CP007062.1\|WP_005910612.1\|2151780_2152170_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008701972.1\|2155264_2155648_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP007062.1\|WP_005910610.1\|2152581_2152953_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370466
NZ_CP007062.1\|WP_008701973.1\|2154564_2155272_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP007062.1\|WP_016361472.1\|2136585_2137416_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP007062.1\|WP_008701970.1\|2156661_2157441_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP007062.1\|WP_016361474.1\|2152185_2152569_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007062.1\|WP_008701968.1\|2161439_2162630_-\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|223082
NZ_CP007062.1\|WP_008701987.1\|2137694_2139275_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173855
NZ_CP007062.1\|WP_008701976.1\|2153303_2154239_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232
NZ_CP007062.1\|WP_008693325.1\|2157452_2158589_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP007062.1\|WP_008701990.1\|2135646_2136585_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674

Protein	Function_ID	Function_description	E-value
NZ_CP007062.1\|WP_008701971.1\|2155678_2156650_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.10554e-121
NZ_CP007062.1\|WP_008701980.1\|2141187_2151768_-\|autotransporter-adhesin-RadD	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	2.77881e-28
NZ_CP007062.1\|WP_008701967.1\|2162842_2163394_+\|lactate-utilization-protein-C	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	4.37927e-66
NZ_CP007062.1\|WP_008701985.1\|2139286_2140072_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.02161e-123
NZ_CP007062.1\|WP_016361473.1\|2140052_2141039_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	6.83841e-114
NZ_CP007062.1\|WP_005910602.1\|2158620_2160048_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	7.85237e-127
NZ_CP007062.1\|WP_008701966.1\|2163436_2165596_+\|LUD-domain-containing-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
NZ_CP007062.1\|WP_008701969.1\|2160276_2161443_-\|ArsA-family-ATPase	gnl\|CDD\|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	5.40707e-111
NZ_CP007062.1\|WP_008701972.1\|2155264_2155648_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	8.30692e-27
NZ_CP007062.1\|WP_005910610.1\|2152581_2152953_-\|hypothetical-protein	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	5.85685e-19
NZ_CP007062.1\|WP_008701973.1\|2154564_2155272_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	3.7896e-82
NZ_CP007062.1\|WP_016361472.1\|2136585_2137416_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.26241e-90
NZ_CP007062.1\|WP_008701970.1\|2156661_2157441_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	2.27603e-80
NZ_CP007062.1\|WP_008701968.1\|2161439_2162630_-\|ArsA-family-ATPase	gnl\|CDD\|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	7.16899e-114
NZ_CP007062.1\|WP_008701987.1\|2137694_2139275_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173855	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP007062.1\|WP_008701976.1\|2153303_2154239_-\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	7.64124e-14
NZ_CP007062.1\|WP_008693325.1\|2157452_2158589_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.78413e-154
NZ_CP007062.1\|WP_008701990.1\|2135646_2136585_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.21809e-115

>NZ_CP007062.1|WP_008701976.1|2153303_2154239_-|hypothetical-protein
MDGGKIFKKLKLAQKGYDENFLNKEFLYIYENKNEIKKFSITFKKQNFLHLTGIKYDSKDNMNPLDFYRAVKEKRLSLSEKNINDFTNIKLKVFPKLINLLQESSVFYKFSPEKENTNWLYIDSFITENQRKEESIILGITEKGENTNNYAPSSILRGIPDEKGDYIGNILIIACRNFSLKKEKYKAIYRVTDVSKIPDELKKDILDLENYNCITGNPIGNIKFKNFENRWIAKIDLERYGIEKKEIDIEGTQISAGFIEEERIYAGVMIYYNISDLIITKEIAQKFVPIKQKEQEKVIEKSKNKRIEIGD
>NZ_CP007062.1|WP_005910610.1|2152581_2152953_-|hypothetical-protein
MKKIILTLFVLLSIGIFANDEIISALKGLNAEYEDLVKEEEARFQKEKELSERAAAQNVKLAELKANIEEKLLAAPEERKTKFFKDTFDGLVKDYSKYLSQINEKIAENTEIVSNFEKIQKIR
>NZ_CP007062.1|WP_016361474.1|2152185_2152569_-|hypothetical-protein
MKIKEILLISLSVVSLIACSNNKINNEDRDAMQILEEKREYYEELDKKKEKEAKGYQVEMTAEEAKTEKEKLANMTEDEKLKYKVDKAKEKIDNMLDIAKKARQEEIEVEETKNQVEEALKNITEEK
>NZ_CP007062.1|WP_005910612.1|2151780_2152170_-|hypothetical-protein
MKKILLLSLSLLILACTNMDTSTDESKEAQISRLLKEADKKKEETVEVEKTVVTDNGEEVTEGEVAVQNKKSHKGMTRGEIMEYEMTRVSDEMNALQADVQQYQEKKAQLKAYQEKLQKLEELNNAGIK
>NZ_CP007062.1|WP_008701980.1|2141187_2151768_-|autotransporter-adhesin-RadD
MKDYNKVESCLKSFLKNNKRLSYSMALLISFLINGGFSYADEAIQVPLRTEIKTRIEKEQENISQMLKEADESMKDIELKIKKLTQRGEFWVKPLEKSYQGFIFANWGNYSKNKNKTESNFNGPEYSASYGKNMGYGQFSNGKYYGEYGIVKNPLEFVDKIDFGANITPKAVTEKTIVEKTVIKKDITAPSVTPPTVEVGEITLTAPEEVAIVEMTPPNEPNPSVTTPSTVPALQGITVAAVSEVNVTPSTPEVAAAPTINAPTVTPPATPAGFTPRLITPPEVPADIVVTPPTITPPTLLGGGANPQADRYYYWDGNDGAISQVNVTSGTISITGNVTNYSNGNMDLTLNNFHVSAYPGTSPSGTAPTSGTYKLNRRFFNTLLNVPYSEFSSGVTINYNYKIGGSNPQNNPPTPYEGAVINLETEGNVAGNLSTAVTKNQITESKKNILKGYQSYSGITGNDNGATELLFINKGNINLISEKGIYIFTTTHTGGNNRTNYLDNEGTISAKGKESVIIKHTPDTAEGRGWIYSNSSSGKMYADGEGSVIMGWAYKHLQHGRAAFVNAGEIKVRGKRAVGIFMADDTNPNNTTMAAGSSVYLTKPIDLLGDRSMGWVSQNTGVSAGNGGYFVQFNIGNEVQDATLGESEGDGTKVEKAIGILQDHSSKTDTTAVIKIGEHSKGSIGVYGRQGILNITAPTAKDKILDSNNQEKALTVSEIDLQGGADNIGIVASKDGTKPAAEVNVTGDVKISGGTGQKIAIAEKGGKINLKGNVMAGTNVNFVKNAVPLYATGEHSTITVQNSNKFEFYLSGNSTAAYAKDKATINMNRTTLPSEPTIHIKGENGKGIGLFAKDGGVINAQKHYIKVENGSTAISSIGAGSNIDFTGGKLEYTGNGYAVYSDGTGKIDLSDAELNLHGSSTAFDVDLGASTLPTKLNSGTKIKVHSDDVIAFNLKRATGLTTVGGIETSIKSKIETKLGLGSGSLNNLFSGSTADRYKVAAVDGGEITVGNLDKSGTKDDTDQAKKDGYQYFNRFLAQRLKATANGSTIKAVLSSSFANDNFNGQVVGFEMNSSKNATNVDETAINLVNSKIMADRTDAGAGAIGAFINYGLVNIDATSKIEVEKENNVVNKQAVGVYAVNGSKVDNKGTIDVGGDQSVGILGMAYREDASHNPIVKEFGDKATNQGLVNITNEKDIKMSGKDAIGIYAMNNNTDTTVTSHLVTNKGTVEVGDSGEKTAVGIYAKGVNVKPESGKIKIGKKAVGIYAEDSQVGEANKDLGTVDFNGDDGVGIYLKGSGSNLLGNKVTLTQSKDSKNKVGILADRGTSSIIKTEVAVGTLNNVIAYYSKGNHEFNVQSNVTLNENSIGISGEDDLLYGDGTNTYTMKLGKSSTGLFGTKKIGLKDKTNIELNGENSVGAYASGANGVITSEGKIKFLKENSIGLYGAKGATINDKTASMDFTNANAKNNIGVYLAGANWERDSALTFSSTHEKGNIYLFAQGGSEGATDKGNKITLKNIFNVSPSNDPTGNEKTIGMYLDTAVKGKSTYVDNTVDMSDGNAKVSVTKKAIGIYAKNADNSKNNIINTLKVSSAGQGTVGVFTDGNLKLSGNGGLIEAKNSGIGLYGNKGTVTVEGTHKVEVSSAGTGMYLTKGSHLSGGKLELENKTAGTSAAGIYYEGTGNEVNHDTDIVVTAGENLLALYANGLKLNNNKEIIIKKGKNNVAAYITGNSTFRNKGKIQLGESGNNGDFKSGIGVYVVDGEAINETGKTIDIYDFNDEAGLSVGMLANAASGKTAKVTNKGTINANGEVIGMVVEDNSEGINDTGAEIVAKNEEPLKAIGAYVNGANAKFENKGKISAENIALVLQGTKEGNIKNTGTLNLTKTGAVGVYAKDSVVDFNIAPTVAGADKTVALYASGTTKIKSQITSATGKAHIGVYAEGNAEFLSGSKVTVGNGSGNDYGIGVYTKSGYNKTVNTDIQLGGEKTIGFYLGATGGSGSTVTHNGTINVGSGIGAYIPEHSKFIAQNTTFNVGDKGTAVYLKGGEVDLGKTGTANINFNGTNGRAIYQDGGTITTGTGLHITGSGSFLTLKNANSSINSIVEVGANGIGINGIYDKSGTYKLTLESPNGHIKLGGDKGTGIAAIAKNTAGLKVDIINKGIIETTSGEKTTGIYGKGANIENATGAKINIGAKGVGIYTTNDNSLEDTTLNNAGEINLIGDEAKGIVAIKSNTNQDFIVGKITGTKDKLVGAYFKDSQAVTKVKDFNISLGTNAKGLVFNEGKDFTITSSSTNKVTIGATTGNSRGIGIAALGVNGNISNTEVKVGKNSLGLYAKDKKLTFDLATGKLESSDASRSSILAYADGNNSEIALNGGGTLKVGANGIALGTKGGKITANATTTVEVDGVKGLGAYVENGGSISNNFDIKVKSAEGIGMYAKGGALASVAKVSELKGNKSIGYVFENITNAINMPNSVQLTDTNATGQVGVAVKGTGAGLTVAGVSVVGSKNIGIYNETTGAVTNNGALNVADSTGDSSIGIYSQGGTVTSTGNATIGKNSIAIYGKNTAATLNGNLNIGEKGVGLYVDNTATSKGDTAVNGNITVGANGAIGIQTTNSKVNLTGDLSVASGDSKGIFSMGAGNVETTGNINVGNNSVGIYKNGSGEIKTALGSIGKTLTVADSGYGVFSKGAKLINNMNVTVGVDAIGAYVDGNDLTSTGTVTVADKGVGLLVKGTGKTLTSTGNITVGSNNSVGLYAGDNANIAQSGNITVANNNGIGVYSKGSGNISTVGAMTVGKDSIGVYKDGKGTMNINASSPIQTMTIAEKGYGLYYKGNSRADSIINSNMNMTLGKEAVGIYAKNTTVNHTGDITVGETTIGSSGFTTPSDNKNSIGIFGDNSNINFKGNMLVDKPLSVGIYGANGGSITVQSGSTITVKNGATGIMTGSKVENITLESGSTLNVDGKVDTNVYTNATKSNVSFGIAAYSGLIDNQGTINVTNGATGIYLAGTASLKNGATGTINIDATSKSTAKPDTKASAELGGIKVTDKGVVTINNKVINGGILNVKGALNMEGLGLDVSTGKTVVDAKSISGVAEVLPSFSRGNSEQKVTIKDVFRTGVVGAFSGDVKSKSVSWIAKISKEPGSSTTTSDITMVRIPYNSLISGERYKNLASGLEDIRSKIGKDSSSPIFKSLDNISSHRDFARAVANIRGDVYSNIQERMKTVENSFDKSYNELLSSYNKTRNVDKFSVIYTGGEHKDSTLGVSGYEYKSTGVLYLNDREAFTYGGKYGWSAGIVGSNFEFKGDTNKGSKERVISGKLGLHYQAPLNKDDDNARLRWLTRGEITVNNHRTKRYSQVGADTYQNKASFYSTELSWKNIISYDYDINTNWTVKPYTGIDISYGHIFNIKEKNEGLPLEVKGKDYFVITPNVGVETKYVLPLGAVHQAFAKVDTEFNYDVTKLYHGVNQAKMRNASTGYYDLSKPERRRARVAVGAELGLEKENAYGITFRAEYQGYKKSQLNYGVRLNYKF
>NZ_CP007062.1|WP_016361473.1|2140052_2141039_+|ABC-transporter-ATP-binding-protein
MVRDLSKNNELILEARNVTKQFKVSKNNILTACDNINLSMYKGKTLGIVGESGCGKSTFLRMLMNLEKISSGEIFYKGKDISKFSKDEIWESRQHIQMVYQDPGASFSPRMKVVDILTEPLINYDRLKKEDKEKKAIELLEMVDLPADFLHKYPHNMSGGQKQRIGIARALSLEPEVLVCDEATSALDVSIQKNIIELLVKLQKERDLCIVFICHDIALVQSFAHEIAVMYLGNVLEVLPGEKLKDSAYHPYTKALLSSLFSINMDFSKKITSIEGDVPSPINLPSGCVFQGRCKFVKDKCKGHKPILEDIEKKHEVACYFTKEINNL
>NZ_CP007062.1|WP_008701985.1|2139286_2140072_+|ABC-transporter-ATP-binding-protein
MLEIKDLTIQYGEKEAVVENFSLTMEKGEIISIVGESGSGKSTVLRSIIGGLLGQGKVVSGDIIFNGKSLLNLSNNEWRELRGTVISMISQDCGATLNPIRKIGSQYIEYINAHTNLNKAEAEKKALFMLEKVRLPEVKNIMNSYPYELSGGMKQRVGIAMALTFEPELILADEPTSALDVTTQAQIVKQMMEINDEFHTGIIIVTHNMGVAAYMADKIIVMKNGIVVDTGTREEIINNPKSDYTKKLLKAIPEMDGERFV
>NZ_CP007062.1|WP_008701987.1|2137694_2139275_+|ABC-transporter-substrate-binding-protein
MKIFTKKSFAFLMAILMMFTLVACGGDKKEETSATGTTNANGELVIGVTSFADTLEPTEQYFSWVITRYGVGENLVRFDENGQLEPSLAEEWKVSDDKLTWEFKIRDGVKFSNGNPLTAEAVKSSFERTFKKSKRAEGFFKPTSIVADGQTLKITTEKPVAILPQCLADPLFLIIDTSDNVEEYTTNAPICTGPYVFKEFVPTEYAIVERNENYWGGKPGLAKVTFKCINDQSTRALSLKSGEIGAAYNLKIENKADFEGQDDINIQELKSLRSTYAFMNQHGVLKDIALRQALLRALNKKAYCEDLLGGAATPGKAPIPPTLDFGFDKLVDENAYNPESAKEILAKAGYKDVDGDGFVEKPDGSKLDLNFVIYTSREELKVYAQAAQANLKDVGIKVTLKTVSYETLLDMRDSGNFDLLIWNVLAANTGDPEKYLYENWDSESASNQAGYKNAKVDELLDKLNAEFNPEKRKELAIEIQQLIMNDAATVFFGYETTFLFSNKKVQNLKMFPMDYYWLTKDVTVVE
>NZ_CP007062.1|WP_016361472.1|2136585_2137416_+|ABC-transporter-permease
MKVTKFIKLHKQLVFFLIMALLIVLVAIFAKQIAPRDPLIAIMERPLRAPDKINLLGTDTLGRDILSRIIYGARYSLFMTLMLVAVVFTLGTTLGLLAGYFGGIVDTIIMRLADMMVSFPGIILAIAIAGLLGPSMTNAIIAISAVTWPKYARLSRSMVLKIKKELYVEAARLTGSGDKDILFKYILPNMVTLMLVTAISDIGALMLEISALSFLGFGAQPPIPEWGSMLNEGRTYLAKAPWLMLYPGMAIVIVVVVFNMLGDNIKDLIDIKEEDF
>NZ_CP007062.1|WP_008701990.1|2135646_2136585_+|ABC-transporter-permease
MVKNHFINRILQILVVLFGISFFTFSLTYLSPGDPAEIMLTECGNIPTPELVKQTRAELGLDKPFAEQYFKWASNVAHGEFGKSYSLRVPVVSKIKTAFMPTLKLSLLSLTFMIIISLPLGILAALKVNKWQDYFVRAISFTGLSIPSFWLGLIFLSIFGVMLHWVTVSGGKADFKSLILPAFTLGFAMSAKYIRQVRHTVLEELNKDYVVGARMRGIKESTILIKHVLPNALIPLITLLGLSLGSLLGGTAVIEIIYNFPGMGNLAIKAISYRDYPLVQAYVLLIALIYLVINLIVDFSYKLLDKRVEGAN
>NZ_CP007062.1|WP_008701973.1|2154564_2155272_-|LrgB-family-protein
MSDIIQKILFSPFFGIVLSLITYEIGKYFFSKTKSIFCNPLLIGILLSIVFLMCTGIPFEAYDKGGSIIKIFISPVESVIIGVALYEQFQILKRNWFPILVSTVLGSTFSIIILYILGKVFGLPDDIFHATLPKSVTTAIALDIASKNGWQEALIPMMTVSTGIIGAVIAPVVTKFMKSRVAKGLAMGTASHAVGTAKAIEMGEVEGAMSGLALSLSAISTSFMIPLLLSTILKL
>NZ_CP007062.1|WP_008701972.1|2155264_2155648_-|CidA/LrgA-family-protein
MGQWIIILALALVGQFVSDLISFPIPKTIIASIILFLLLEFKVVKADYFKEALASCKKHLAFLFLPVGVGIMTQLKSEPAMVYVKVLIIMIISTILIMLVTGVLADIIIGAQEKILGNKNKKEGKDE
>NZ_CP007062.1|WP_008701971.1|2155678_2156650_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MGKNIMVYIETADNSPINVSLEALTLAKKISKENNEQVIAVLIGENLDEAAKKCFDYGADEVLYVEENKKELEAVGNALTDIKEKYNPSVIFLGSTINGKDLANIVASKMKTPAFVDAVNVKYENGKYLMTLPMYSGNILKEVTFEGDKTLVIAVRSGACKKEVCENAKSGEVKKEKAADKNLFTKIAEIVQEISETVNLEEAEVIVSGGRGMGSKENFELVKQLAEVCGGVVGATRPATEDEWIPRSHQVGQSGKIVAPKLYIACGISGATQHVSGIMGSNYIVAINKDEDAPIFDVTDVGIVGNVMDIIPIMIEEIKKIKS
>NZ_CP007062.1|WP_008701970.1|2156661_2157441_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MEILVCIKQVADDSVEIFMNEKTGKPALEGVEKVVNAFDTYALEMAVRLKEAKGDTTVTTLSLGGEDAKNSLKNCLAVGADEAFYIKDENYQEKDAVIIAQALSKGIKKIEEQRGKKFDIIFCGKETTDFATGQVGIMLANELNYGVVTNLVDIDTEGEKVIAKKETETGYEKVEVASPCIVTVNKPNYEPRYPTIKSKMAARKKAIAEISIEVANESAVKEVKLFSPPKRQAGVKIKTGTAEELVAQAIQKMLEAKVF
>NZ_CP007062.1|WP_008693325.1|2157452_2158589_-|acyl-CoA-dehydrogenase
MAYLISEEAQDLLKDVKKFCDNEVREQCKEYDKSGEWPKEIYDKAIEQGYQALEVPEKYGGPGLKRVDVAALIEEMAIADAGFATTISASGLAMKPVFISGNEEQKQRMCDLVLAGGLGAFCLTEPGAGSDASAGRTTAVKDGNEYVLNGRKCFITNGAVASFYCITAITDKEKGLKGISMFFVEKGTKGLSTGNHEDKMGIRTSNTCDVVLEDCRIPASALVGKEGEGFAIAMKTLDQARSWIGCIAVGIAQRGIQEAIAYGKERIQFGKPIIKNQALQFKIADMEIKTETARQMVAHALTKMDLGLPYGKESAIAKCYAGDIAMQVSSEAIQMFGGYGYSREYPVEKLLRDSKIFQIFEGTNEIQRIVIANNVIGR
>NZ_CP007062.1|WP_005910602.1|2158620_2160048_-|FAD-binding-oxidoreductase
MGNHIYNKVSEDLVEKFKKIVPGKVYTKDEINKDFFHDEMPIYGEGEPEVVIDVTTTEAISEIMKLCYENNIPVTPRGAGTGLTGAAVAVTGGVMLNMTKMNKILGYDYENFVVKVEPGVLLNDLAEDALKQGLLYPPDPGEKFATLGGNVSTNAGGMRAVKYGTTRDYVRAMTVVLPTGEIIKLGATVSKTSTGYSLLNLMIGSEGTLGVITELTLKLIPAPKETISLIIPYENLDECIATVPKFFMNHLQPQALEFMEREIVLASERYIGKSVFPQKLEGVDIGAYLLVTFDGNNMEELEEITERASEVVLEAGALDVLVADTPAKKKDAWAARSSFLEAIEAETKLLDECDVVVPVNQIAPYLHYVNETGKKYDFAVKSFGHAGDGNLHIYACSNDMEMGEFKRQVEEFLMDIYKKASELGGLISGEHGIGYGKMQFLADFSGEVNMRLMRGIKEVFDPKMILNPNKVCYKA
>NZ_CP007062.1|WP_008701969.1|2160276_2161443_-|ArsA-family-ATPase
MRILIYTGKGGVGKTSIAAATAFFLANSGKKVILMSTDQAHSLGDVLDKKLNGEICQVFQNLDVVEIDTIEESQKVWRNLQDYLKQIISAKANDGIEIDETLLFPGLEEIFSLLKILDIYEANEYDVMVVDCAPTGQSLSMLTYSEKLNMLADTILPMVQSINSIFGSFISKKTSVPKPRDIVFEEFKSLVKRLTKLYEIFHKRDSTSIRIVTTPEQIVLEEARRNYTWLQLYNFNVDAVYMNKLYPKEAMEGYFEDWKNIQKDSIYLAEESFSEQKLFKLELQAEEIHGKDSLKKIAQLLYKTINPAEIFCQAESFKIEEVNGTRILTIHLPFAKEENISVIKEKYDIIISLLNETRRFHLPDKLKTRKISKYSYKNGELKINMDYE
>NZ_CP007062.1|WP_008701968.1|2161439_2162630_-|ArsA-family-ATPase
MARIIIFTGKGGVGKSSVAAAHALSSAKMGKKTLLVSADTAHNLGDIFKIQIGSKITKISENLDALELDSDVVKREIFPEVKNTMLDLMGKSGIGITNLNENFFLPGFENLFSLLKIKEIYETNQYEHILVDCAPTGETLALLKLPELLAWYMEKFFPIGKKIVRVLSPISKLAYKVVLPSAKTMNTIEHIHKKLLELQELLKNNEICSVRLVCIPEKMIVEETKRNFMYLNLYRYQVDTVFINRIITDEIENTFMQKWKKIQSKYIKELEEVFFDIPVVKIPWYPKEIVGETGLELLCNTIENLPDLFSVKKVTQNEEYFPCKDGYLLKIQLPFIKEEELKIYHHEMDINIKINNVNRCIPLPNVLRKSHIVDTKLENGNLYIHFQVEKKKEEKS
>NZ_CP007062.1|WP_008701967.1|2162842_2163394_+|lactate-utilization-protein-C
MKSITDDLYESFKKNLESVNGNCMRTPKAELGKVITELFKEHNVDSVSLFESPMLKEAGVISSLQQNGITVHTDHIRLHAETDKGGLSEAQHGIAELGTIVQEQDDVDGRIVATMSEYYIGVVKGSTIVLTYDDMFDILSGMKKIPNFVGFITGPSRTADIECVGTVGVHGPIEVSIVIVDDE
>NZ_CP007062.1|WP_008701966.1|2163436_2165596_+|LUD-domain-containing-protein
MASEDLKKEIHFALENATLGRTLGNFCKTYPARREKSYAGVDFEKTREKIAEVKSYAAEHIDEMIAEFTTNCEARGGHVYHAKSTEDAMDWIRKLVKEKGVKTIVKSKSMASEEIKMNHVLGDDGVLVQETDLGEFIIALEGNTPVHMVMPALHLNKEQVADLFTDYTKVKNNPIISEEVKTARKVMRDKFTHADMGVSGANVAVAETGTVFTMTNEGNGRMVGTLPPIHLYIFGIEKFVKSLSDARYIFKALPRNGTAQRITSYISMYTGACEVTTDKEKDEKCKKDFYCVILDDPGRREILAETDFREIFNCIRCGACLDVCPAFALVGGHVYGSNVYTGGIGTMLTHFLVSEERAAEIQNICLQCGRCNDVCGGGLHISDMIMKLREKNMKEHPDALKKFALDAVSDRKLFHSMLRIASVAQGMFTKGEPMIRHLPMFLSGMIKGRSFPAIAQVPLRDFFHTIKQDVKNPKGTIAIFAGCLLDFVYTDLARAVVADMNSIGYKVEMPLGQACCGCPATNMGDTENAKKEAEINIKGMEAEKYDYIVSACPSCTHQLHLYPTFFEEGTEMHKKAKELADKTYDFCKLFYELGGMSEEGDGKPIKVTYHDSCHLKRSLKVSKEQRELLKHTKGVEFIEMNDCDNCCGFGGSYSLLYPEISAPILEKKIQNIKESGADVVALDCPGCLMQIKGGLDARGINDIKVKHTAEIIAEKRGLI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007062_1	1.3\|175605\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	175605-175640	36	NZ_CP007062.1	2242917-2242952	2	0.944
NZ_CP007062_6	6.3\|2050462\|19\|NZ_CP007062\|CRT	2050462-2050480	19	NZ_CP007062.1	1040293-1040311	2	0.895

1. spacer 1.3|175605|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to position: 2242917-2242952, mismatch: 2, identity: 0.944

attccactccttacctattcttttcatattcttttg	CRISPR spacer
attccactccttcccaattcttttcatattcttttg	Protospacer
************ ** ********************

2. spacer 6.3|2050462|19|NZ_CP007062|CRT matches to position: 1040293-1040311, mismatch: 2, identity: 0.895

ttgttatcatcaccaatag	CRISPR spacer
ttgtaatcatcaccattag	Protospacer
**** ********** ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007062_6	6.1\|2050378\|19\|NZ_CP007062\|CRT	2050378-2050396	19	LG146436	KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same	46295-46313	0	1.0
NZ_CP007062_6	6.1\|2050378\|19\|NZ_CP007062\|CRT	2050378-2050396	19	KF534715	Pectobacterium phage PM1, complete genome	46295-46313	0	1.0
NZ_CP007062_6	6.2\|2050420\|19\|NZ_CP007062\|CRT	2050420-2050438	19	LG146436	KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same	46295-46313	0	1.0
NZ_CP007062_6	6.2\|2050420\|19\|NZ_CP007062\|CRT	2050420-2050438	19	KF534715	Pectobacterium phage PM1, complete genome	46295-46313	0	1.0
NZ_CP007062_6	6.4\|2050504\|19\|NZ_CP007062\|CRT	2050504-2050522	19	LG146436	KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same	46295-46313	0	1.0
NZ_CP007062_6	6.4\|2050504\|19\|NZ_CP007062\|CRT	2050504-2050522	19	KF534715	Pectobacterium phage PM1, complete genome	46295-46313	0	1.0
NZ_CP007062_6	6.5\|2050546\|19\|NZ_CP007062\|CRT	2050546-2050564	19	LG146436	KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same	46295-46313	0	1.0
NZ_CP007062_6	6.5\|2050546\|19\|NZ_CP007062\|CRT	2050546-2050564	19	KF534715	Pectobacterium phage PM1, complete genome	46295-46313	0	1.0
NZ_CP007062_6	6.8\|2050672\|19\|NZ_CP007062\|CRT	2050672-2050690	19	NZ_CP015323	Bacillus filamentosus strain Hbe603 plasmid pBEH1, complete sequence	29575-29593	0	1.0
NZ_CP007062_1	1.3\|175605\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	175605-175640	36	KR131711	Fusobacterium phage Funu2 supercont1.1, partial genome	37240-37275	2	0.944
NZ_CP007062_1	1.6\|175804\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	175804-175839	36	KR131711	Fusobacterium phage Funu2 supercont1.1, partial genome	19864-19899	2	0.944
NZ_CP007062_5	5.3\|2027020\|27\|NZ_CP007062\|CRT	2027020-2027046	27	MN694358	Marine virus AFVG_250M310, complete genome	39630-39656	5	0.815
NZ_CP007062_5	5.3\|2027020\|27\|NZ_CP007062\|CRT	2027020-2027046	27	MN525560	Escherichia phage PR01 coat protein gene, partial cds	365-391	6	0.778
NZ_CP007062_1	1.16\|176464\|35\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	176464-176498	35	JQ680366	Unidentified phage clone 2200_scaffold2352 genomic sequence	1564-1598	8	0.771
NZ_CP007062_1	1.11\|176134\|35\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	176134-176168	35	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	441762-441796	9	0.743
NZ_CP007062_1	1.11\|176134\|35\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	176134-176168	35	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	346623-346657	9	0.743
NZ_CP007062_1	1.9\|176002\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	176002-176037	36	MT375529	Pelagibacter phage Kolga EXVC01, complete genome	37570-37605	10	0.722
NZ_CP007062_1	1.9\|176002\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	176002-176037	36	MT375519	Pelagibacter phage Aegir EXVC01, complete genome	4033-4068	10	0.722

1. spacer 6.1|2050378|19|NZ_CP007062|CRT matches to LG146436 (KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

2. spacer 6.1|2050378|19|NZ_CP007062|CRT matches to KF534715 (Pectobacterium phage PM1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

3. spacer 6.2|2050420|19|NZ_CP007062|CRT matches to LG146436 (KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

4. spacer 6.2|2050420|19|NZ_CP007062|CRT matches to KF534715 (Pectobacterium phage PM1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

5. spacer 6.4|2050504|19|NZ_CP007062|CRT matches to LG146436 (KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

6. spacer 6.4|2050504|19|NZ_CP007062|CRT matches to KF534715 (Pectobacterium phage PM1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

7. spacer 6.5|2050546|19|NZ_CP007062|CRT matches to LG146436 (KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

8. spacer 6.5|2050546|19|NZ_CP007062|CRT matches to KF534715 (Pectobacterium phage PM1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttatcatcgccagctg	CRISPR spacer
ttgttatcatcgccagctg	Protospacer
*******************

9. spacer 6.8|2050672|19|NZ_CP007062|CRT matches to NZ_CP015323 (Bacillus filamentosus strain Hbe603 plasmid pBEH1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtttttaattcctgttg	CRISPR spacer
aagtttttaattcctgttg	Protospacer
*******************

10. spacer 1.3|175605|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to KR131711 (Fusobacterium phage Funu2 supercont1.1, partial genome) position: , mismatch: 2, identity: 0.944

attccactccttacctattcttttcatattcttttg	CRISPR spacer
attccactccttcccaattcttttcatattcttttg	Protospacer
************ ** ********************

11. spacer 1.6|175804|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to KR131711 (Fusobacterium phage Funu2 supercont1.1, partial genome) position: , mismatch: 2, identity: 0.944

atcctgtatgataagacttactgcttccatatcctc	CRISPR spacer
aagctgtatgataagacttactgcttccatatcctc	Protospacer
*  *********************************

12. spacer 5.3|2027020|27|NZ_CP007062|CRT matches to MN694358 (Marine virus AFVG_250M310, complete genome) position: , mismatch: 5, identity: 0.815

cacttggtgctgttattcctatattta	CRISPR spacer
aagatggtgctattattcctatatcta	Protospacer
 *  *******.************.**

13. spacer 5.3|2027020|27|NZ_CP007062|CRT matches to MN525560 (Escherichia phage PR01 coat protein gene, partial cds) position: , mismatch: 6, identity: 0.778

cacttggtgctgttattcctatattta	CRISPR spacer
atactggtgatgttattcctattttta	Protospacer
   .***** ************ ****

14. spacer 1.16|176464|35|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to JQ680366 (Unidentified phage clone 2200_scaffold2352 genomic sequence) position: , mismatch: 8, identity: 0.771

tcataaactgttacatataacaagcc---ttcacttcc	CRISPR spacer
tcatacactgatacatataacaagccggatacaac---	Protospacer
***** **** ***************   * ** .

15. spacer 1.11|176134|35|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 9, identity: 0.743

ctcagaagcaagaaaattagcttttgaaatataaa	CRISPR spacer
atctttatcaagaaaactagcttttgaagtatagc	Protospacer
 **   * ********.***********.****.

16. spacer 1.11|176134|35|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 9, identity: 0.743

ctcagaagcaagaaaattagcttttgaaatataaa	CRISPR spacer
atctttatcaagaaaactagcttttgaagtatagc	Protospacer
 **   * ********.***********.****.

17. spacer 1.9|176002|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to MT375529 (Pelagibacter phage Kolga EXVC01, complete genome) position: , mismatch: 10, identity: 0.722

tctttatatagtaaagaagataaaaaaggagcagaa	CRISPR spacer
tttttatatattaaagaagctaaaaaagttttttca	Protospacer
*.******** ******** ********   .   *

18. spacer 1.9|176002|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to MT375519 (Pelagibacter phage Aegir EXVC01, complete genome) position: , mismatch: 10, identity: 0.722

tctttatatagtaaagaagataaaaaaggagcagaa	CRISPR spacer
tttttatatattaaagaagctaaaaaagttttttca	Protospacer
*.******** ******** ********   .   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

264974 : 329536

Fusobacterium_phage(40.0%)

portal,integrase,transposase,capsid,holin,protease

attL 257573:257588|attR 315392:315407

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
257573:257588	attL	NA	NA	NA	NA
WP_016361166.1\|264974_265376_-\|transposase	IS200/IS605 family transposase	A0A0H3UZM0	Geobacillus_virus	1.2e-23	43.5
WP_008701517.1\|265537_266278_+	hypothetical protein	NA	NA	NA	NA
WP_008701516.1\|266565_267492_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_005910874.1\|267793_268198_+	hypothetical protein	NA	NA	NA	NA
WP_005910876.1\|268213_268768_+	hypothetical protein	NA	NA	NA	NA
WP_016361167.1\|268782_269148_+	hypothetical protein	NA	NA	NA	NA
WP_005910370.1\|269164_269413_+	hypothetical protein	NA	NA	NA	NA
WP_005910878.1\|269379_269955_+	OmpA family protein	NA	NA	NA	NA
WP_016361168.1\|269972_275957_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_008701508.1\|276009_277644_-	AAA family ATPase	NA	NA	NA	NA
WP_008701506.1\|277759_279274_+	YfcC family protein	NA	NA	NA	NA
WP_016361169.1\|279332_281177_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.5e-112	37.2
WP_005904666.1\|281367_281589_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_008701502.1\|281591_281969_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016361170.1\|282151_283786_+	AAA family ATPase	NA	NA	NA	NA
WP_008701498.1\|283844_284708_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_016361171.1\|284916_288189_+\|protease	autotransporter serine protease fusolisin	NA	NA	NA	NA
WP_008701494.1\|288886_290800_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_008701492.1\|290825_292043_+	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_008701491.1\|292285_295852_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_005910893.1\|295922_297272_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_005910894.1\|297576_298764_-	methionine gamma-lyase	NA	NA	NA	NA
WP_008701490.1\|298879_300307_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_008701489.1\|300527_301742_-	threonine ammonia-lyase	NA	NA	NA	NA
WP_008701487.1\|303395_304568_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_008701486.1\|304732_306157_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_005910906.1\|306220_307135_-	glutaminase A	NA	NA	NA	NA
WP_005910908.1\|307448_307748_+	hypothetical protein	NA	NA	NA	NA
WP_008701485.1\|308133_309468_+	signal recognition particle protein	NA	NA	NA	NA
WP_005904724.1\|309514_309778_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_008701484.1\|310059_310362_+	hypothetical protein	NA	NA	NA	NA
WP_016361174.1\|310377_310836_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_016361175.1\|310845_311295_-	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	5.7e-22	47.9
WP_008701478.1\|311309_311597_-	hypothetical protein	NA	NA	NA	NA
WP_008701476.1\|311608_312040_-	M15 family metallopeptidase	A0A162EAZ8	Salmonella_phage	9.4e-30	48.5
WP_008701475.1\|312051_312834_-	hypothetical protein	A0A0E3U2P7	Fusobacterium_phage	2.4e-07	36.7
WP_008701474.1\|312846_313821_-\|integrase	site-specific integrase	A0A0E3U2P3	Fusobacterium_phage	2.8e-130	73.1
WP_101433443.1\|313952_314189_+	hypothetical protein	A0A0E3Y6G8	Fusobacterium_phage	1.9e-37	96.2
WP_008701471.1\|315299_315926_-	hypothetical protein	NA	NA	NA	NA
315392:315407	attR	NA	NA	NA	NA
WP_008701470.1\|315922_317032_-	hypothetical protein	A0A2H4J8D2	uncultured_Caudovirales_phage	6.8e-16	24.2
WP_008701469.1\|317024_317363_-	hypothetical protein	NA	NA	NA	NA
WP_008701468.1\|317362_317947_-	hypothetical protein	NA	NA	NA	NA
WP_008701467.1\|317891_318848_-	hypothetical protein	NA	NA	NA	NA
WP_008701466.1\|318847_319171_-	hypothetical protein	NA	NA	NA	NA
WP_008701465.1\|319188_319773_-	hypothetical protein	NA	NA	NA	NA
WP_008701464.1\|319773_322068_-	hypothetical protein	A0A1U9WQS5	Geobacillus_phage	1.3e-37	36.1
WP_016361178.1\|322178_322574_-	hypothetical protein	NA	NA	NA	NA
WP_008701459.1\|322573_322963_-	hypothetical protein	NA	NA	NA	NA
WP_008701457.1\|322962_324000_-	hypothetical protein	NA	NA	NA	NA
WP_008701455.1\|323999_324512_-	hypothetical protein	NA	NA	NA	NA
WP_016361179.1\|324504_324840_-	hypothetical protein	NA	NA	NA	NA
WP_008701452.1\|324841_325339_-	hypothetical protein	NA	NA	NA	NA
WP_016361180.1\|325335_325845_-	hypothetical protein	NA	NA	NA	NA
WP_008701449.1\|325896_327699_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_008701448.1\|327710_328448_-	hypothetical protein	NA	NA	NA	NA
WP_008701447.1\|328444_329536_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	5.9e-20	32.3

DBSCAN-SWA_2

767341 : 854061

101

Fusobacterium_phage(90.28%)

portal,terminase,integrase,tail,plate,holin,protease

attL 779802:779819|attR 829263:829280

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005908820.1\|767341_767671_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_005905142.1\|767671_767956_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_008700898.1\|768227_769184_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_008700897.1\|769204_770425_+	MFS transporter	NA	NA	NA	NA
WP_005908823.1\|770545_771565_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_005908824.1\|771587_773090_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	9.6e-13	33.2
WP_005908825.1\|773179_774205_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_005905155.1\|774401_775349_-	ROK family protein	NA	NA	NA	NA
WP_016361257.1\|775372_776296_-	NAD(P)/FAD-dependent oxidoreductase	A0A2I2L5E1	Orpheovirus	8.2e-31	32.7
WP_008700895.1\|776317_776941_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	2.6e-20	32.6
WP_008700894.1\|777086_777668_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA
WP_008700893.1\|777664_778438_-	hypothetical protein	NA	NA	NA	NA
WP_008700891.1\|778441_779446_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_008700889.1\|779473_783025_-	chromosome segregation protein SMC	NA	NA	NA	NA
779802:779819	attL	NA	NA	NA	NA
WP_008700887.1\|783196_785179_+	S9 family peptidase	NA	NA	NA	NA
WP_008700885.1\|785457_787278_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_008700884.1\|787532_789353_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_008700883.1\|789371_789839_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005905171.1\|789850_790402_+	LemA family protein	NA	NA	NA	NA
WP_008700882.1\|790743_791292_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_008700881.1\|791471_793946_+	AMP-binding protein	A0A1V0SBX8	Catovirus	6.8e-40	29.0
WP_008700880.1\|794048_795569_+	DUF1846 domain-containing protein	NA	NA	NA	NA
WP_008700879.1\|795706_797290_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.6e-154	51.8
WP_008700877.1\|798785_799817_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_016361261.1\|799818_801795_-	aconitate hydratase	NA	NA	NA	NA
WP_008700873.1\|801980_802844_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016361262.1\|802840_803602_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_008700869.1\|803752_807319_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_008700868.1\|807435_808632_-	acetate kinase	NA	NA	NA	NA
WP_008700866.1\|808682_809687_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_016361263.1\|810649_810838_-	hypothetical protein	NA	NA	NA	NA
WP_016361264.1\|810866_811778_-\|integrase	site-specific integrase	A8ATX2	Listeria_phage	8.1e-15	27.3
WP_016361265.1\|811779_812346_-	hypothetical protein	A0A0E3U2S4	Fusobacterium_phage	1.4e-41	100.0
WP_008700857.1\|812455_812650_-	hypothetical protein	A0A0E3Y4X2	Fusobacterium_phage	1.6e-29	100.0
WP_016361266.1\|812777_813179_-\|holin	phage holin family protein	A0A0E3Y658	Fusobacterium_phage	6.8e-59	100.0
WP_008700853.1\|813191_813458_-	hypothetical protein	A0A0E3Y5F6	Fusobacterium_phage	2.3e-31	100.0
WP_008700850.1\|813454_813820_-	hypothetical protein	A0A0E3Y6G3	Fusobacterium_phage	9.9e-65	100.0
WP_008700848.1\|813830_814364_-	N-acetylmuramoyl-L-alanine amidase	A0A0E3Y6A6	Fusobacterium_phage	4.0e-99	100.0
WP_008700846.1\|814360_815110_-	hypothetical protein	A0A0E3U258	Fusobacterium_phage	7.1e-142	100.0
WP_008702919.1\|815301_816276_-\|integrase	site-specific integrase	A0A0E3U2P3	Fusobacterium_phage	4.7e-170	100.0
WP_008702909.1\|816355_816640_+	hypothetical protein	A0A0E3Y5F3	Fusobacterium_phage	2.5e-47	98.9
WP_008702910.1\|816645_816978_-	hypothetical protein	A0A0E3Y626	Fusobacterium_phage	2.9e-55	100.0
WP_008702911.1\|816979_817276_+	hypothetical protein	A0A0E3Y4V3	Fusobacterium_phage	6.8e-48	100.0
WP_008700845.1\|818273_818909_-\|tail	phage tail protein I	A0A0E3U255	Fusobacterium_phage	4.8e-115	100.0
WP_008700843.1\|818901_820002_-\|plate	baseplate J/gp47 family protein	A0A0E3U2P1	Fusobacterium_phage	3.5e-206	100.0
WP_005899054.1\|819994_820309_-	hypothetical protein	A0A0E3Y6F8	Fusobacterium_phage	6.5e-49	100.0
WP_005899055.1\|820308_820695_-\|tail	phage tail protein	A0A0E3Y6A2	Fusobacterium_phage	1.2e-65	100.0
WP_008700841.1\|820694_821228_-\|plate	phage baseplate assembly protein V	A0A0E3Y4V1	Fusobacterium_phage	1.6e-87	100.0
WP_005899057.1\|821224_822310_-	hypothetical protein	A0A0E3U253	Fusobacterium_phage	2.6e-201	100.0
WP_005899058.1\|822309_822519_-	hypothetical protein	NA	NA	NA	NA
WP_016361268.1\|822508_825256_-\|tail	phage tail tape measure protein	A0A0E3U2N9	Fusobacterium_phage	0.0e+00	100.0
WP_016361269.1\|825330_825561_-	hypothetical protein	A0A0E3Y621	Fusobacterium_phage	1.2e-31	100.0
WP_008700834.1\|825734_826070_-	hypothetical protein	A0A0E3Y5E7	Fusobacterium_phage	2.0e-56	100.0
WP_016361270.1\|826079_826613_-\|tail	phage major tail tube protein	A0A0E3Y6F4	Fusobacterium_phage	1.2e-95	100.0
WP_008700830.1\|826623_828024_-\|tail	phage tail protein	A0A0E3U251	Fusobacterium_phage	7.2e-273	100.0
WP_016361271.1\|828024_828378_-	hypothetical protein	A0A0E3U2N7	Fusobacterium_phage	2.5e-33	99.1
WP_005899066.1\|828379_828856_-	hypothetical protein	A0A0E3Y698	Fusobacterium_phage	1.0e-85	100.0
WP_008700827.1\|828852_829461_-	hypothetical protein	A0A0E3Y4U7	Fusobacterium_phage	9.6e-89	100.0
829263:829280	attR	NA	NA	NA	NA
WP_008700826.1\|829460_829775_-	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	2.6e-53	100.0
WP_008700825.1\|829774_830002_-	hypothetical protein	A0A0E3U249	Fusobacterium_phage	4.9e-22	100.0
WP_005908893.1\|830052_831060_-	hypothetical protein	A0A0E3U2N5	Fusobacterium_phage	9.4e-190	100.0
WP_008700824.1\|831072_831390_-	hypothetical protein	A0A0E3Y5E3	Fusobacterium_phage	2.9e-52	100.0
WP_008700823.1\|831401_832505_-\|protease	Clp protease ClpP	A0A0E3Y6E9	Fusobacterium_phage	1.0e-189	100.0
WP_008700821.1\|832504_834040_-\|portal	phage portal protein	A0A0E3Y693	Fusobacterium_phage	1.4e-293	100.0
WP_005899075.1\|834049_834268_-	hypothetical protein	A0A0E3U247	Fusobacterium_phage	7.0e-34	100.0
WP_016361272.1\|834267_836040_-\|terminase	phage terminase large subunit family protein	A0A0E3U2N4	Fusobacterium_phage	0.0e+00	100.0
WP_008700817.1\|836002_836476_-	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	4.1e-79	100.0
WP_008700816.1\|836587_837259_-	hypothetical protein	A0A0E3Y615	Fusobacterium_phage	4.1e-117	100.0
WP_008700815.1\|837255_838572_-	DNA modification methylase	A0A0E3Y5D8	Fusobacterium_phage	2.1e-253	100.0
WP_008700814.1\|838728_839832_-	hypothetical protein	A0A0E3U246	Fusobacterium_phage	2.1e-206	100.0
WP_008795347.1\|839833_840025_-	hypothetical protein	A0A0E3U2N2	Fusobacterium_phage	4.1e-30	100.0
WP_008700813.1\|840003_840228_-	hypothetical protein	A0A0E3Y6E5	Fusobacterium_phage	3.3e-39	100.0
WP_016361273.1\|840390_840918_-	DUF5105 domain-containing protein	A0A0E3Y687	Fusobacterium_phage	1.4e-91	100.0
WP_008692971.1\|840939_841404_-	transcriptional regulator	A0A0E3Y4U2	Fusobacterium_phage	5.7e-57	100.0
WP_008700811.1\|841636_841858_+	hypothetical protein	A0A0E3U245	Fusobacterium_phage	2.3e-32	100.0
WP_008700810.1\|841898_842102_-	hypothetical protein	NA	NA	NA	NA
WP_008700807.1\|842232_842472_+	hypothetical protein	A0A0E3U2N0	Fusobacterium_phage	4.8e-36	100.0
WP_008692967.1\|842442_842862_-	DUF2513 domain-containing protein	A0A0E3Y611	Fusobacterium_phage	3.3e-72	100.0
WP_008692966.1\|842917_843400_-	hypothetical protein	A0A0E3Y5D4	Fusobacterium_phage	8.2e-83	100.0
WP_008700805.1\|843399_843759_-	hypothetical protein	A0A0E3Y6E2	Fusobacterium_phage	5.4e-55	100.0
WP_008700803.1\|843867_844089_-	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	6.4e-35	100.0
WP_017139859.1\|844824_845028_+	hypothetical protein	A0A0E3Y682	Fusobacterium_phage	2.0e-30	100.0
WP_008700795.1\|845017_845254_+	hypothetical protein	A0A0E3Y4U1	Fusobacterium_phage	1.1e-37	100.0
WP_008700793.1\|845263_845440_+	hypothetical protein	A0A0E3Y606	Fusobacterium_phage	1.4e-24	100.0
WP_008700792.1\|845451_845715_+	hypothetical protein	A0A0E3U243	Fusobacterium_phage	3.2e-41	100.0
WP_008700791.1\|845725_846772_+	hypothetical protein	A0A0E3U2M6	Fusobacterium_phage	9.8e-166	100.0
WP_008692952.1\|846783_846993_+	hypothetical protein	A0A0E3Y5C9	Fusobacterium_phage	4.7e-35	100.0
WP_008700790.1\|847004_847385_+	hypothetical protein	A0A0E3Y6D7	Fusobacterium_phage	1.9e-66	100.0
WP_008692949.1\|847394_848102_+	ParA family protein	A0A0E3Y677	Fusobacterium_phage	1.2e-127	100.0
WP_008700789.1\|848094_848721_+	hypothetical protein	A0A0E3U242	Fusobacterium_phage	3.9e-109	100.0
WP_005899123.1\|848717_848894_+	hypothetical protein	A0A0E3U2M4	Fusobacterium_phage	5.0e-22	100.0
WP_008700788.1\|849085_849223_+	hypothetical protein	A0A0E3Y4T7	Fusobacterium_phage	1.2e-18	100.0
WP_008700787.1\|849197_849449_+	hypothetical protein	A0A0E3Y600	Fusobacterium_phage	4.9e-39	100.0
WP_008700785.1\|849438_849591_+	hypothetical protein	A0A0E3Y5C2	Fusobacterium_phage	6.2e-21	100.0
WP_016361277.1\|849650_850226_+	hypothetical protein	A0A0E3U2M3	Fusobacterium_phage	1.4e-102	100.0
WP_016361278.1\|850235_850628_+	hypothetical protein	A0A0E3Y6C4	Fusobacterium_phage	3.8e-70	100.0
WP_008795360.1\|850637_850925_+	hypothetical protein	A0A0E3Y667	Fusobacterium_phage	9.9e-52	100.0
WP_008700777.1\|850927_851386_+	hypothetical protein	A0A0E3Y4S6	Fusobacterium_phage	3.1e-84	100.0
WP_008700775.1\|851357_851726_+	ASCH domain-containing protein	A0A0E3U240	Fusobacterium_phage	7.4e-60	100.0
WP_008700773.1\|851852_853271_+	recombinase family protein	NA	NA	NA	NA
WP_008700770.1\|853338_854061_+	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	3.3e-27	32.2

DBSCAN-SWA_3

1138998 : 1145975

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008700463.1\|1138998_1140513_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.5e-63	44.5
WP_008700462.1\|1140550_1141357_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_008700461.1\|1141377_1141920_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.9e-19	35.2
WP_008700460.1\|1141907_1142927_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	1.4e-63	42.9
WP_008700459.1\|1143126_1144476_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.1e-52	31.8
WP_005909206.1\|1144510_1145224_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.2e-43	42.8
WP_008700457.1\|1145501_1145975_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.0e-25	47.6

DBSCAN-SWA_4

2200928 : 2244238

Fusobacterium_phage(97.01%)

portal,capsid,transposase,integrase,tRNA,terminase

attL 2214286:2214304|attR 2250543:2250561

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008701933.1\|2200928_2202347_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	7.6e-52	31.8
WP_008701932.1\|2202365_2203061_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_008701930.1\|2203036_2205373_-	endonuclease MutS2	F2Y0V3	Organic_Lake_phycodnavirus	3.8e-16	28.0
WP_008701928.1\|2205762_2206158_+	hypothetical protein	A0A0E3U260	Fusobacterium_phage	4.4e-66	100.0
WP_008701926.1\|2206216_2206537_-	hypothetical protein	A0A0E3Y631	Fusobacterium_phage	4.9e-52	100.0
WP_008701924.1\|2206545_2206905_-	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	7.5e-65	100.0
WP_008701922.1\|2206916_2207417_-	M15 family metallopeptidase	A0A0E3Y6B0	Fusobacterium_phage	4.8e-94	100.0
WP_016361480.1\|2207610_2208357_-	hypothetical protein	A0A0E3U2P7	Fusobacterium_phage	3.2e-142	100.0
WP_016361481.1\|2208422_2208677_+	hypothetical protein	A0A0E3U261	Fusobacterium_phage	1.4e-41	100.0
WP_008701916.1\|2208673_2209369_-	hypothetical protein	A0A0E3Y6G8	Fusobacterium_phage	2.5e-133	100.0
WP_008701914.1\|2209371_2209977_-	hypothetical protein	A0A0E3Y5G1	Fusobacterium_phage	4.6e-91	100.0
WP_008701912.1\|2209973_2211113_-	hypothetical protein	A0A0E3Y634	Fusobacterium_phage	4.9e-211	100.0
WP_008701910.1\|2211109_2211445_-	hypothetical protein	A0A0E3U2P9	Fusobacterium_phage	1.2e-56	100.0
WP_008701908.1\|2211453_2212101_-	hypothetical protein	A0A0E3U262	Fusobacterium_phage	2.8e-94	100.0
WP_008701906.1\|2212100_2212979_-	hypothetical protein	A0A0E3Y4V7	Fusobacterium_phage	6.8e-136	100.0
WP_008701904.1\|2212953_2213295_-	hypothetical protein	A0A0E3Y6B2	Fusobacterium_phage	8.4e-58	100.0
WP_008701903.1\|2213364_2213940_-	Rha family transcriptional regulator	A0A0E3Y6H2	Fusobacterium_phage	8.5e-103	100.0
WP_016361482.1\|2214050_2214224_-	hypothetical protein	A0A0E3U2Q1	Fusobacterium_phage	5.8e-23	100.0
2214286:2214304	attL	NA	NA	NA	NA
WP_008701901.1\|2214344_2214941_-	hypothetical protein	A0A0E3U263	Fusobacterium_phage	3.5e-99	100.0
WP_008701900.1\|2214950_2216819_-	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	0.0e+00	100.0
WP_008701898.1\|2216962_2217388_-	hypothetical protein	A0A0E3Y638	Fusobacterium_phage	7.2e-75	100.0
WP_008701897.1\|2217426_2217840_-	hypothetical protein	A0A0E3Y4V9	Fusobacterium_phage	1.3e-73	100.0
WP_008701896.1\|2217850_2218837_-	hypothetical protein	A0A0E3U2Q2	Fusobacterium_phage	2.1e-181	100.0
WP_008701895.1\|2218836_2219346_-	hypothetical protein	A0A0E3U264	Fusobacterium_phage	3.3e-90	100.0
WP_008701893.1\|2219338_2219674_-	hypothetical protein	A0A0E3Y6B6	Fusobacterium_phage	7.0e-57	100.0
WP_008701891.1\|2219675_2220164_-	hypothetical protein	A0A0E3Y6H6	Fusobacterium_phage	5.5e-87	100.0
WP_008701888.1\|2220150_2220573_-	hypothetical protein	A0A0E3Y5G9	Fusobacterium_phage	1.4e-70	100.0
WP_008701885.1\|2220613_2221441_-	hypothetical protein	A0A0E3U2Q5	Fusobacterium_phage	4.0e-154	100.0
WP_008701882.1\|2221453_2222068_-	hypothetical protein	A0A0E3U265	Fusobacterium_phage	9.3e-108	100.0
WP_008701880.1\|2222102_2222861_-\|capsid	minor capsid protein	A0A0E3Y641	Fusobacterium_phage	2.9e-143	100.0
WP_008701878.1\|2222864_2224373_-\|portal	phage portal protein	A0A0E3Y4W1	Fusobacterium_phage	5.8e-284	100.0
WP_008701876.1\|2224375_2225656_-\|terminase	PBSX family phage terminase large subunit	A0A0E3Y6C0	Fusobacterium_phage	1.6e-242	100.0
WP_008701874.1\|2225645_2226113_-\|transposase	transposase	A0A0E3U2Q7	Fusobacterium_phage	1.3e-80	100.0
WP_008701873.1\|2226105_2227431_-	ParB N-terminal domain-containing protein	A0A0E3U266	Fusobacterium_phage	1.5e-256	100.0
WP_008701872.1\|2227434_2227785_-	hypothetical protein	A0A0E3Y6I1	Fusobacterium_phage	1.1e-55	100.0
WP_008701870.1\|2228709_2228961_+	hypothetical protein	A0A0E3Y645	Fusobacterium_phage	1.0e-44	100.0
WP_008701869.1\|2229240_2229408_-	hypothetical protein	A0A0E3U2R0	Fusobacterium_phage	1.2e-22	100.0
WP_008701868.1\|2229407_2229761_-	RusA family crossover junction endodeoxyribonuclease	A0A0E3U267	Fusobacterium_phage	1.2e-62	100.0
WP_008701865.1\|2229765_2230269_-	hypothetical protein	A0A0E3Y4W5	Fusobacterium_phage	2.9e-83	100.0
WP_008701864.1\|2230293_2231511_-	AAA family ATPase	A0A0E3Y6C3	Fusobacterium_phage	2.0e-218	100.0
WP_008701863.1\|2231511_2232240_-	helix-turn-helix domain-containing protein	A0A0E3Y6I4	Fusobacterium_phage	2.0e-101	100.0
WP_008701862.1\|2232397_2233183_-	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	2.7e-152	100.0
WP_008701860.1\|2233934_2234312_+	DUF2513 domain-containing protein	A0A0E3U268	Fusobacterium_phage	1.8e-61	100.0
WP_008701859.1\|2234288_2234465_-	hypothetical protein	A0A0E3Y5I0	Fusobacterium_phage	2.6e-23	100.0
WP_008701858.1\|2234476_2234638_-	hypothetical protein	A0A0E3Y649	Fusobacterium_phage	1.5e-20	100.0
WP_008701857.1\|2234755_2234920_-	hypothetical protein	A0A0E3Y4W7	Fusobacterium_phage	3.5e-22	100.0
WP_008701856.1\|2235018_2235504_-	PH domain-containing protein	A0A0E3U2R5	Fusobacterium_phage	1.5e-81	100.0
WP_008701855.1\|2235629_2236337_-	helix-turn-helix domain-containing protein	A0A0E3U270	Fusobacterium_phage	7.2e-128	100.0
WP_008701854.1\|2236526_2236679_+	hypothetical protein	A0A0E3Y6C8	Fusobacterium_phage	3.4e-19	100.0
WP_016361484.1\|2236687_2237065_+	hypothetical protein	A0A0E3Y6I8	Fusobacterium_phage	2.9e-67	100.0
WP_008701852.1\|2237074_2237314_+	hypothetical protein	A0A0E3Y5I4	Fusobacterium_phage	5.5e-40	100.0
WP_008701851.1\|2237314_2237464_+	hypothetical protein	A0A0E3U2R6	Fusobacterium_phage	2.0e-19	100.0
WP_016361485.1\|2237473_2237611_+	hypothetical protein	A0A0E3U271	Fusobacterium_phage	5.2e-19	100.0
WP_008701850.1\|2237585_2237837_+	hypothetical protein	A0A0E3Y652	Fusobacterium_phage	3.2e-38	100.0
WP_008701849.1\|2237952_2238645_+	hypothetical protein	A0A0E3Y6D2	Fusobacterium_phage	4.6e-127	100.0
WP_008701848.1\|2238656_2239166_+	siphovirus Gp157 family protein	A0A0E3U2R8	Fusobacterium_phage	6.4e-86	100.0
WP_008701847.1\|2239175_2239427_+	hypothetical protein	A0A0E3U272	Fusobacterium_phage	5.8e-40	98.8
WP_008701846.1\|2239574_2240159_+	hypothetical protein	A0A0E3Y6J2	Fusobacterium_phage	2.3e-111	100.0
WP_008701844.1\|2240159_2240333_+	hypothetical protein	A0A0E3Y5I7	Fusobacterium_phage	1.4e-24	100.0
WP_008701843.1\|2240390_2240537_+	hypothetical protein	A0A0E3Y654	Fusobacterium_phage	2.3e-17	100.0
WP_008701841.1\|2240536_2240770_+	hypothetical protein	A0A0E3U2S0	Fusobacterium_phage	1.9e-37	100.0
WP_008701839.1\|2240780_2241281_+	hypothetical protein	A0A0E3U273	Fusobacterium_phage	9.0e-93	100.0
WP_016361487.1\|2241326_2241689_+	hypothetical protein	A0A0E3Y4X1	Fusobacterium_phage	2.0e-65	100.0
WP_008701835.1\|2241691_2242150_+	methyltransferase domain-containing protein	A0A0E3Y6D6	Fusobacterium_phage	2.8e-88	100.0
WP_025407257.1\|2242155_2242446_+	hypothetical protein	A0A0E3Y6J7	Fusobacterium_phage	2.3e-48	99.0
WP_008701832.1\|2242445_2242955_+	dUTP diphosphatase	A0A0E3U2S3	Fusobacterium_phage	1.2e-92	100.0
WP_016361488.1\|2242954_2243140_+	hypothetical protein	A0A0E3U274	Fusobacterium_phage	2.4e-27	100.0
WP_008701827.1\|2243206_2244238_+\|integrase	site-specific integrase	A0A0E3Y5J2	Fusobacterium_phage	6.7e-191	100.0
2250543:2250561	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP007062.1|WP_008701854.1|2236526_2236679_+|hypothetical-protein

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Acr_ID: NZ_CP007062.1|WP_016361484.1|2236687_2237065_+|hypothetical-protein

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Acr_ID: NZ_CP007062.1|WP_008701852.1|2237074_2237314_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP007062.1|WP_008701854.1|2236526_2236679_+|hypothetical-protein

2236526_2236679_+

50 aa aa

2200928-2244238

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007062_1	TypeI-B	1.3\|175605\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	175605-175640	36	2242952-2242917	2

1. spacer 1.3|175605|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007062 position: 2242952-2242917, mismatch: 2

attccactccttacctattcttttcatattcttttg	CRISPR spacer
attccactccttcccaattcttttcatattcttttg	Protospacer
************ ** ********************

NZ_CP007062.1|WP_016361484.1|2236687_2237065_+|hypothetical-protein

2236687_2237065_+

125 aa aa

2200928-2244238

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007062_1	TypeI-B	1.3\|175605\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	175605-175640	36	2242952-2242917	2

1. spacer 1.3|175605|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007062 position: 2242952-2242917, mismatch: 2

attccactccttacctattcttttcatattcttttg	CRISPR spacer
attccactccttcccaattcttttcatattcttttg	Protospacer
************ ** ********************

NZ_CP007062.1|WP_008701852.1|2237074_2237314_+|hypothetical-protein

2237074_2237314_+

79 aa aa

2200928-2244238

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP007062_1	TypeI-B	1.3\|175605\|36\|NZ_CP007062\|PILER-CR,CRISPRCasFinder,CRT	175605-175640	36	2242952-2242917	2

1. spacer 1.3|175605|36|NZ_CP007062|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007062 position: 2242952-2242917, mismatch: 2

attccactccttacctattcttttcatattcttttg	CRISPR spacer
attccactccttcccaattcttttcatattcttttg	Protospacer
************ ** ********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007062

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information