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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017342 Staphylococcus aureus subsp. aureus TCH60, complete sequence 13 crisprs cas3,WYL,csa3,DEDDh,DinG 3 2 10 1
NC_017345 Staphylococcus aureus subsp. aureus TCH60 plasmid unnamed, complete sequence 0 crisprs RT 0 0 0 0

Results visualization

1. NC_017342
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_1 105603-105758 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_2 526576-526663 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_3 762572-762705 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_4 766143-766350 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_5 847646-847750 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_6 1039835-1039960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_7 1117411-1117501 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_8 1621732-1621811 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_9 2112872-2112964 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_10 2414443-2414528 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_11 2480902-2480981 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_12 2539199-2539283 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017342_13 2691580-2691672 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017342_4 4.3|766300|23|NC_017342|CRISPRCasFinder 766300-766322 23 NC_017342.1 762930-762952 1 0.957
NC_017342_12 12.1|2539225|33|NC_017342|CRISPRCasFinder 2539225-2539257 33 NC_017342.1 967218-967250 1 0.97
NC_017342_12 12.1|2539225|33|NC_017342|CRISPRCasFinder 2539225-2539257 33 NC_017342.1 2288351-2288383 1 0.97
NC_017342_10 10.1|2414473|26|NC_017342|CRISPRCasFinder 2414473-2414498 26 NC_017342.1 1162210-1162235 2 0.923
NC_017342_10 10.1|2414473|26|NC_017342|CRISPRCasFinder 2414473-2414498 26 NC_017342.1 1224412-1224437 2 0.923

1. spacer 4.3|766300|23|NC_017342|CRISPRCasFinder matches to position: 762930-762952, mismatch: 1, identity: 0.957

gaggtaccaagtgagccaggcac	CRISPR spacer
gaagtaccaagtgagccaggcac	Protospacer
**.********************

2. spacer 12.1|2539225|33|NC_017342|CRISPRCasFinder matches to position: 967218-967250, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggtcccaacaaagagaaattggattcccaat	Protospacer
****.****************************

3. spacer 12.1|2539225|33|NC_017342|CRISPRCasFinder matches to position: 2288351-2288383, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggattcccaat	Protospacer
************ ********************

4. spacer 10.1|2414473|26|NC_017342|CRISPRCasFinder matches to position: 1162210-1162235, mismatch: 2, identity: 0.923

ccaccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**.*******.***************

5. spacer 10.1|2414473|26|NC_017342|CRISPRCasFinder matches to position: 1224412-1224437, mismatch: 2, identity: 0.923

ccaccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccgcg	Protospacer
**.******************** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017342_8 8.1|1621758|28|NC_017342|CRISPRCasFinder 1621758-1621785 28 NZ_CP007066 Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence 8899-8926 7 0.75
NC_017342_13 13.1|2691612|29|NC_017342|CRISPRCasFinder 2691612-2691640 29 NZ_CP026273 Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence 142439-142467 8 0.724

1. spacer 8.1|1621758|28|NC_017342|CRISPRCasFinder matches to NZ_CP007066 (Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence) position: , mismatch: 7, identity: 0.75

ttttaataggcaatggaagttggcgggg	CRISPR spacer
ttttaataggcaatggaagtaatctaaa	Protospacer
******************** . * ...

2. spacer 13.1|2691612|29|NC_017342|CRISPRCasFinder matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 8, identity: 0.724

cgattagagggatttatgcagttgtgcgg	CRISPR spacer
aatttagagggatttatatagttgtgaat	Protospacer
 . **************..******* . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1207981 : 1275588 66 Staphylococcus_phage(66.67%) tail,transposase,tRNA,holin,protease NA
DBSCAN-SWA_2 1408694 : 1463250 55 Staphylococcus_phage(94.74%) protease NA
DBSCAN-SWA_3 1597458 : 1606500 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 1675938 : 1684250 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_5 1742070 : 1829597 104 Staphylococcus_phage(80.52%) portal,tail,head,capsid,terminase,tRNA,integrase,plate,holin,protease attL 1743537:1743554|attR 1789128:1789145
DBSCAN-SWA_6 2278381 : 2286854 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 2306746 : 2333051 31 Enterococcus_phage(33.33%) holin,bacteriocin,protease NA
DBSCAN-SWA_8 2461382 : 2477024 23 Staphylococcus_phage(89.47%) terminase,coat,integrase attL 2464541:2464555|attR 2478058:2478072
DBSCAN-SWA_9 2560109 : 2574247 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_10 2586218 : 2594038 10 Pandoravirus(16.67%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_017342.1|WP_001153681.1|1267217_1267370_+|hypothetical-protein 1267217_1267370_+ 50 aa aa NA NA NA 1207981-1275588 yes