CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015678	Streptococcus parasanguinis ATCC 15912, complete sequence	4 crisprs	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csm6,DinG,DEDDh,csa3	0	5	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015678_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015678_1

214756-214886

Orphan

Consensus_repeat	Method
GTTCAACCAGAGGCTCCAGCCTATACAGGAGTAGTGGAAGCTAAAGGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015678_1

>merge|NC_015678|1|214756-214886|CRISPRCasFinder
GTTCAACCAGAGGCTCCAGCCTATACAGGAGTAGTGGAAGCTAAAGGGACGCAGGAAGAAGGTCACGTGGGAGAAGCTCCTGTTCAACCAGAGGCTCCAGCCTATACAGGAGTAGTGGAAGCTAAAGGGAC

>NC_015678|1|1|214756-214886|CRISPRCasFinder
GTTCAACCAGAGGCTCCAGCCTATACAGGAGTAGTGGAAGCTAAAGGGAC	GCAGGAAGAAGGTCACGTGGGAGAAGCTCCT
GTTCAACCAGAGGCTCCAGCCTATACAGGAGTAGTGGAAGCTAAAGGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015678.1\|WP_013903317.1\|212045_213473_+\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NC_015678.1\|WP_003017768.1\|204780_204999_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NC_015678.1\|WP_004219970.1\|220693_221188_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NC_015678.1\|WP_009732555.1\|221739_223245_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_015678.1\|WP_013903323.1\|226462_227746_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NC_015678.1\|WP_013903315.1\|209777_210920_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179997
NC_015678.1\|WP_003006411.1\|205473_205737_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NC_015678.1\|WP_013903322.1\|226165_226396_+\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|377678
NC_015678.1\|WP_013903321.1\|224227_225634_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NC_015678.1\|WP_013903310.1\|198469_201088_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NC_015678.1\|WP_013903314.1\|207819_209727_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|237052
NC_015678.1\|WP_003011591.1\|201433_202393_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NC_015678.1\|WP_013903319.1\|221187_221724_+\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NC_015678.1\|WP_013903316.1\|210909_212046_+\|glucose-1-phosphate-adenylyltransferase-subunit-GlgD	unknown	unknown	gnl\|CDD\|273966
NC_015678.1\|WP_003006433.1\|219726_219927_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|237390
NC_015678.1\|WP_004219958.1\|219960_220674_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NC_015678.1\|WP_003002471.1\|225647_226067_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NC_015678.1\|WP_013903313.1\|205740_207474_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_015678.1\|WP_013903320.1\|223260_224142_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NC_015678.1\|WP_013903312.1\|202506_204666_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|180921

Protein	Function_ID	Function_description	E-value
NC_015678.1\|WP_013903317.1\|212045_213473_+\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NC_015678.1\|WP_003017768.1\|204780_204999_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	2.36262e-33
NC_015678.1\|WP_004219970.1\|220693_221188_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	2.58406e-44
NC_015678.1\|WP_009732555.1\|221739_223245_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_015678.1\|WP_013903323.1\|226462_227746_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NC_015678.1\|WP_013903315.1\|209777_210920_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179997	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NC_015678.1\|WP_003006411.1\|205473_205737_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	4.5527e-52
NC_015678.1\|WP_013903322.1\|226165_226396_+\|DUF1146-domain-containing-protein	gnl\|CDD\|377678	pfam06612, DUF1146, Protein of unknown function (DUF1146). This family consists of several hypothetical bacterial proteins of unknown function.	0.000145241
NC_015678.1\|WP_013903321.1\|224227_225634_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NC_015678.1\|WP_013903310.1\|198469_201088_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NC_015678.1\|WP_013903314.1\|207819_209727_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|237052	PRK12313, PRK12313, 1,4-alpha-glucan branching protein GlgB.	0
NC_015678.1\|WP_003011591.1\|201433_202393_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NC_015678.1\|WP_013903319.1\|221187_221724_+\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	6.33133e-35
NC_015678.1\|WP_013903316.1\|210909_212046_+\|glucose-1-phosphate-adenylyltransferase-subunit-GlgD	gnl\|CDD\|273966	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	3.76018e-163
NC_015678.1\|WP_003006433.1\|219726_219927_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|237390	PRK13467, PRK13467, F0F1 ATP synthase subunit C; Provisional.	7.53308e-26
NC_015678.1\|WP_004219958.1\|219960_220674_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	6.03375e-60
NC_015678.1\|WP_003002471.1\|225647_226067_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	3.0213e-49
NC_015678.1\|WP_013903313.1\|205740_207474_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_015678.1\|WP_013903320.1\|223260_224142_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	8.11944e-141
NC_015678.1\|WP_013903312.1\|202506_204666_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|180921	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0

>NC_015678.1|WP_013903317.1|212045_213473_+|glycogen-synthase-GlgA
MKLLFVAAEGAPFSKTGGLGDVIGALPKSLAKSGHDVRVILPYYDMVEAKFGDQIEDVLHFETKVGWRSQYVGVKRIVRDGVTFYFIDNQHYFFRGHVYGDFDDGERFAFFQLAALETMERVDFIPDVLHAHDYHTAMIPFLLKEKYRWIQAYHGIKTVLTIHNLEFQGQFDPGMLWDLFGVGFERYADGTLRWNDCLNWMKAGILYADRVTTVSPSYAHEIMTSEYGCGLDQILRMESGKVTGIVNGIDADLYNPETDPLLTYHFSLSDLSGKAASKRALQERVGLPVRDDVPLFGIVSRLTRQKGFDVVVEELHQLLQKDIQIVLLGTGDPGFENAFAWFGQAYSDKLSANITFDVQLAQEIYAASDVFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVQPYNVVDGSGTGFSFNNLSGYWFNWAVDEALAVYYKDKQAWYGLQEQAMTRDFSWDTASQRYNDLYQSL
>NC_015678.1|WP_013903316.1|210909_212046_+|glucose-1-phosphate-adenylyltransferase-subunit-GlgD
MKIDKYSAILGNTVGYHDMSTLTSHRPVASLPFDGKYRLIDFPLSSLANAGIRSVFGIFQQENISSVFDHIRSGREWGLSTLLSHYYLGIYNTPVENTTVGPEYYQQLLTYLKRSGSNQTVALNCDVLMNIDLNQIFHLHNTIDRPITVVYKKLHLQNISEVNAVLEIDETDHVTEQKLFDGKDPDEVYNMSTDVFIVDTPWLIEKIEEEAKKEYPQKLRYILRDLAVEYNAFAFEYTGYLANIHSVESYYQANLDMLENQKFMKLFSPNQKVYTKVKNEEPTYYSKTSNIKSSQFASGSIVEGTVERSVVSRRVHLHQGSEVRSSLLFPGVVIHENAIVEHAILDKGAEVAAGVTIRGTEEAPVVVKKGTIVTEDIV
>NC_015678.1|WP_013903315.1|209777_210920_+|glucose-1-phosphate-adenylyltransferase
MKNEMLALILAGGQGTRLGKLTKNIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVITQYQPLALNSHIGNGSSWGLDGINTGVSILQPYSASEGNRWFEGTSHAILQNIDYIDSINPEYVLILSGDHIYKMDYDDMLQAHKDNNASLTVAVLDVPLKEASRFGIMNTDANNRIVEFEEKPAEPKSTKASMGIYIFDWARLRNMLIAAEKSDIDMSDFGKNVIPTYLESGESVYAYEFNGYWKDVGTIESLWEANMEYIDPNNALDSRDRHWKIYSRNLISPPNFFGEHGHVEDSLVVDGCSVDGTVKHSILSTEAQVREGAVVEDAVVMSNAIIGKGAVVKRAIIGEGAVIAEGVVIDGTEEVQVVGYNEKVGVATDED
>NC_015678.1|WP_013903314.1|207819_209727_+|1,4-alpha-glucan-branching-protein-GlgB
MDRSTDLWTFGRGDNFRLQEYLGAHKEFEGDQEGYTFRVWAPNAQAVDLIGDFTDWEARRIPMVRNEGGVWEVFCPDAKEGDIYKYLVTRQNGHQVQKIDPLALWMEKRPNTGSIIKTIPEKNWKDGLWRARRKKLGFKERPVNIYEVHAGSWKRNEDHSSYTFKQLKEELIPYLVEMNYTHVEFMPVMAHPLGLSWGYQLMGYFALEQTYGSPEEFQDFVEECHLNNIGVIVDWVPGHFIINDDALAYYDGTPTFEYQDEHRAHNYGWGALNFDLGKNQVQSFLISSLKFWIDTYHLDGIRVDAVSNMLYLDYDSGPWTPNIDGGNLNYEGVHFLRRLNAIIKNEHPDVMMIAEESSAGQKVTGPEEEGGLGFDYKWNMGWMNDILRFYEEDPVYRKFDFNLVTFSYMYAFSENFLLPFSHDEVVHGKKSLMHKMWGDRYNQFAGLRNLLTYQICHPGKKLLFMGSEFGQFLEWKSEEQLEWGNLEDEMNAKMRRFTSQLNHFYKEHKELWEIDDSFDGLEIIDADNRDQSVLSMVRKNRKGDLLVCVFNMAPVERKDFTIGVPVSAVYEEIWNTELEEWGGVWKEHNPTVQSQEGLWKDYEQTLTFTLPALGASIWKVKRKVRKTKSKTSDKK
>NC_015678.1|WP_013903313.1|205740_207474_+|phosphoenolpyruvate--protein-phosphotransferase
MTKMLKGIAASDGVAVAKAYLLIQPDLSFETVSVEDTSAEEARLDAALEASQNELSLIRENAVASLGEEAAQVFDAHMMVLADPEMVGQIKETIRTKKINAEAGLKEVTDMFIAIFEGMEDNPYMQERAADIRDVTKRVLANLLGKKLPNPASINEEAIVVAHDLTPSDTAQLNKKYVKAFVTNIGGRTSHSAIMARTLEIAAVLGTNNITELVKDGDVLAVSGITGEVVINPTEEQIAEFKAAGEAYAKQKAEWALLKDAQTVTADGKHFELAANIGTPKDVEGVNDNGAEAVGLYRTEFLYMDSQDFPTEDDQYEAYKAVLEGMNGKPVVVRTMDIGGDKELPYFDLPKEMNPFLGFRALRISISETGNQMFRTQLRALLRASVHGKLRIMFPMVALLTEFRTAKGILEEEKAKLVAEGVAVADDIQVGIMIEIPAAAMLADQFAKEVDFFSIGTNDLIQYTMAADRMNEQVSYLYQPYNPSILRLINNVIKAAHAEGKWAGMCGEMAGDQTAVPLLVGMGLDEFSMSATSVLRTRSLMKKLDTAKMQEYANRALTECSTMEEVLELSKEYVNVD
>NC_015678.1|WP_003006411.1|205473_205737_+|phosphocarrier-protein-HPr
MASKDFHIVAETGIHARPATLLVQTASKFASDITLEYKGKSVNLKSIMGVMSLGVGQGADVVISAEGADADDAIAAISETMTKEGLA
>NC_015678.1|WP_003017768.1|204780_204999_-|glutaredoxin-like-protein-NrdH
MVTIYSKNNCVQCKMTKRFLDSNHVEYREINLDEQPQFVEHVKSLGFNAAPVIQTPDEVFSGFQPAKLKKLS
>NC_015678.1|WP_013903312.1|202506_204666_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MGLKSLEDVTYFRLNNEINRPVNGQIMLHKDKEALDAFFKENVVPNTKTFDSITDKIQYLLEHNYIERAFIEKYRPEFLEELAQFIKDQNFQFKSFMAAYKFYNQYALKTNDGEYYLESMEDRVFFNALYFADGNEAIARDIANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGVPFNYIDITEKYDELVANPNIRKTKIKARDLETEISKLQQESGYPYVVNIDTANRANPVDGKIIMSNLCSEILQVQEPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHIVAVPTIDHGNKLAHSFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSAEDWAELRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYPAAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRTFTDDGGEVGANQCESCVI
>NC_015678.1|WP_003011591.1|201433_202393_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSNKEKDLVGKVFGGLTLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAEIINEIYLNGTPLEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDGVGWTEEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYNYGL
>NC_015678.1|WP_013903310.1|198469_201088_+|alanine--tRNA-ligase
MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRITNAQKAIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDFPKDKLYMTYYPDDKDSYNRWIAVGVDPSHLIPIEDNFWEIGAGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFIEKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIAEEAGMTVDRDGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQLPSKLVAIVADNAEVEAVSEGTASLIFAETPFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTIGGYSVELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKEVHAGNVIKELAPIVDGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL
>NC_015678.1|WP_003006433.1|219726_219927_+|F0F1-ATP-synthase-subunit-C
MNLTFLGLCLACFGVSLAEGLMMSSLLKSASRQPEIIGQLRSLLILGVAFVEGTFFVTLVMAFIIK
>NC_015678.1|WP_004219958.1|219960_220674_+|F0F1-ATP-synthase-subunit-A
MEESITPTITLGPVTFNLTLLAMTLIAVLVVFGFIYWASRKMTIRPKGKQNVLEYAYDFVVGFTKGNIGEHYIKDYSLFLFVLFLFLLVANNIGLMAKIETTNGYNLWTSPTANLGYDFAFSFLITLIAHVEGIRRRGVKEYLKAFVTPGFMTPMNILEELTNFASLALRIFGNIFAGEVLASLLVNLSHQAFYWYPFAFIGSMAWTAFSIFISCIQAYVFTMLSSIYIGKKINGEE
>NC_015678.1|WP_004219970.1|220693_221188_+|F0F1-ATP-synthase-subunit-B
MHVSMSEIIGNFILIAGSFLLLIFLIKKFAWNNINGILEARAKKITDDIDGAESARQKAEELASKREEELAGSRKEAASIVENAKETAEKNKSQILSEATQEAVRLKEKAQQEIAHNKEEALNSIKGDVADLTVNLASKLLSQQLDAEGQRQLIDRYLDELGEA
>NC_015678.1|WP_013903319.1|221187_221724_+|F0F1-ATP-synthase-subunit-delta
MDKKQLMVIEKYTQPFVQLVFEKGEQDLVFEKLTQIKGIFEETGLANFLAHIGVEDEEKAKSLRLFQPSDSQLLDHLIEVVILNHREALFYDIVTICLDQIQLLSNAFVVTVTTVAGLDPVQEQKLVPIIERKFGIQVRSIQQKIDPDLIGGFVVTANHKTLDTSLKHQLQVIKSKLK
>NC_015678.1|WP_009732555.1|221739_223245_+|F0F1-ATP-synthase-subunit-alpha
MAINAQEISALIKQQIENFKPNFDVTETGVVTYIGDGIARAHGLENAMSGELLIFENGSYGMAQNLETTDVGIIILGDFTDIREGDSVRRTGKIMEVPAGDALIGRVVNPLGQPVDGLGEIVTDKFRPVETPAPGVMQRKSVSEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSIAIDTILNQKGQDMICIYVAIGQKESTVRTQVETLRKYGAMDYTIVVTASASQPSPLLYLAPYAGVAMAEEFMYNGKHVLIVYDDLSKQAVAYRELSLLLRRPPGREAFPGDVFYLHSRLLERSAKVSDELGGGSITALPIIETQAGDISAYIATNVISITDGQIFLQDSLFNAGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLASYRELEAFTKFGSDLDAATQAKLNRGRRTVEVLKQPVHEPLTVEKQVVILYALTHGFLDSVPVDDILRFQEELFDYFEAHYHQIFETIRSTHDLPAEEELDAALTEFVNQSNFK
>NC_015678.1|WP_013903320.1|223260_224142_+|F0F1-ATP-synthase-subunit-gamma
MAVSLNDIKNKIASTKNTSQITNAMQMVSAAKLGKSEQAAKDFQVYAAKVRKLLTDLLHGHETENTKSHPMLVSRPVKKTAYIVITSDRGLVGGYNASILKTMMEMKAEYHPTGDDFEVICIGSVGADFFRARGIQPVYELRGLPDQPSFKEVRKIISKTVQMYQEGLFDELYVCYNHHVNSLTSQMRVEQMLPIIDLDPNEADEDYVLNLELESSRDAILDQLLPQFAESMIYGAIIDAKTAENAAGMMAMQTATDNAKKVIDELTIQYNRARQAAITQEITEIVAGASALE
>NC_015678.1|WP_013903321.1|224227_225634_+|F0F1-ATP-synthase-subunit-beta
MSLGKISQVVGPVVDVAFSVGDKLPEINNALVVYKNDQQKSKVVLEVALELGDGVVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDLDQPFAEDAPRDSIHKKAPSFDELSTSEEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLVQLGIYPAVDPLASSSRALSPEIVGEEHYAVASEVKRVLQRYHELQDIIAILGMDELSDEEKTLVARARRIQFFLSQNFNVAEQFTGQPGSYVPVAETVRGFKEILDGKYDHLPEDAFRGVGSIEDVIAKAEKMGF
>NC_015678.1|WP_003002471.1|225647_226067_+|F0F1-ATP-synthase-subunit-epsilon
MSQMNVQIVTPDGLVYDHHAAFVSVKTIDGELGILPHHINTIAVLAVDQVKVRRVDDDKHIDWIAVNGGIIEVADNVITIVADSAERARDIDISRAERAKLRAEKAIEEAKDQHSVDMERRAKIALQRAINRINVGNRL
>NC_015678.1|WP_013903322.1|226165_226396_+|DUF1146-domain-containing-protein
MIQMIFNFSSHLLFIFFAYYLLLNLVQWEKFLKVSTENAVKIRFLILMLSIGIGYLASSFFISVYEMSRQIFIGQF
>NC_015678.1|WP_013903323.1|226462_227746_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEKIIVNGGNNRLVGTVKIEGAKNAVLPLLAATVLASEGVTTLKNVPVLSDVFTMNNVVRGLNAQVTFNEEENTVVVDAQEKLSEEAPYKYVSKMRASIVVLGPVLARNGHAKVSMPGGCTIGSRPIDLHLKGLEAMGAEITQTAGYIEAKADRLKGAHIYMDFPSVGATQNIMMAATLADGVTVIENAAREPEIVDLALLLNKMGANVRGAGTETLTVVGVESLHGANHNVVQDRIEAGTFMIGAAMTGGDVLIEDAIWEHNRPLLSKMQEMGVTVTEEENGIRIQSDISKLRPVTVKTLPYPGFPTDMQAQFTALMAMAKGESTMIETVFENRFQHLEEMRRMGVHSDIMRDTARIVGGESFQGAEVMSTDLRASATLVLMGLVAEGETKVSKLSHLDRGYYQFHEKLVALGADVKRVEEADDEN

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Crispr_ID: NC_015678_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015678_2

350707-350814

Orphan

Consensus_repeat	Method
AAACGCAATTAATCCTCAAAAGGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015678_2

>merge|NC_015678|2|350707-350814|CRISPRCasFinder
AAACGCAATTAATCCTCAAAAGGTTCCCCGAACCTTTTGAGTCCCACAGACGCACCACGTCGAGTGTGTAAGTTTGTTGGTAAAACGCAGTTAATCCTCAAAAGGTTC

>NC_015678|2|2|350707-350814|CRISPRCasFinder
AAACGCAATTAATCCTCAAAAGGTTC	CCCGAACCTTTTGAGTCCCACAGACGCACCACGTCGAGTGTGTAAGTTTGTTGGTA
AAACGCAGTTAATCCTCAAAAGGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015678.1\|WP_013903421.1\|347980_349297_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_015678.1\|WP_013903423.1\|351407_352130_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_015678.1\|WP_041818169.1\|354794_356108_+\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NC_015678.1\|WP_013903417.1\|344866_345205_+\|YlbF/YmcA-family-competence-regulator	unknown	unknown	gnl\|CDD\|237467
NC_015678.1\|WP_013903411.1\|338388_339552_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NC_015678.1\|WP_013903419.1\|346653_347139_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NC_015678.1\|WP_013903430.1\|359001_359493_+\|phosphoribosylanthranilate-isomerase	unknown	unknown	unknown
NC_015678.1\|WP_013903412.1\|339548_340226_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
NC_015678.1\|WP_013903415.1\|342476_343643_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NC_015678.1\|WP_001020606.1\|354481_354784_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NC_015678.1\|WP_013903432.1\|360343_360772_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_015678.1\|WP_013903433.1\|360892_361768_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|225714
NC_015678.1\|WP_013903420.1\|347129_347984_+\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NC_015678.1\|WP_013903413.1\|340215_341085_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_015678.1\|WP_003003486.1\|353038_354469_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NC_015678.1\|WP_013903424.1\|352138_352891_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_015678.1\|WP_041818165.1\|345377_346661_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_015678.1\|WP_013903427.1\|356121_356442_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NC_015678.1\|WP_041818163.1\|341396_342470_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NC_015678.1\|WP_013903431.1\|359774_360098_+\|TfoX/Sxy-family-protein	unknown	unknown	gnl\|CDD\|225612

Protein	Function_ID	Function_description	E-value
NC_015678.1\|WP_013903421.1\|347980_349297_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.53963e-58
NC_015678.1\|WP_013903423.1\|351407_352130_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.69982e-53
NC_015678.1\|WP_041818169.1\|354794_356108_+\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.99521e-133
NC_015678.1\|WP_013903417.1\|344866_345205_+\|YlbF/YmcA-family-competence-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	1.31363e-38
NC_015678.1\|WP_013903411.1\|338388_339552_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	3.14001e-132
NC_015678.1\|WP_013903419.1\|346653_347139_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	8.27984e-61
NC_015678.1\|WP_013903412.1\|339548_340226_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	6.92281e-107
NC_015678.1\|WP_013903415.1\|342476_343643_+\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NC_015678.1\|WP_001020606.1\|354481_354784_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.46934e-39
NC_015678.1\|WP_013903432.1\|360343_360772_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.28036e-16
NC_015678.1\|WP_013903433.1\|360892_361768_+\|phosphotransferase	gnl\|CDD\|225714	COG3173, COG3173, Predicted aminoglycoside phosphotransferase [General function prediction only].	7.2207e-35
NC_015678.1\|WP_013903420.1\|347129_347984_+\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.21855e-136
NC_015678.1\|WP_013903413.1\|340215_341085_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.02084e-103
NC_015678.1\|WP_003003486.1\|353038_354469_+\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NC_015678.1\|WP_013903424.1\|352138_352891_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.95391e-49
NC_015678.1\|WP_041818165.1\|345377_346661_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_015678.1\|WP_013903427.1\|356121_356442_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	7.14975e-34
NC_015678.1\|WP_041818163.1\|341396_342470_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	6.7824e-174
NC_015678.1\|WP_013903431.1\|359774_360098_+\|TfoX/Sxy-family-protein	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	2.00212e-13

>NC_015678.1|WP_013903421.1|347980_349297_+|LCP-family-protein
MSKESNFLSHHERKRLEYLYSNFHYLNEREQLEYKYLLKKSQGAYEESRPTTPEVASTEEVQGEVSEQIGDLPVYQSRSQRSKKKTAVAGGAVKRKKPRRKIRVKRILKWLALFFLLIIGGMVFMFVKGLNSKPTGPDAKPAVVEKFNGKKSRDGVNILILGTDGRIGEKSDETRTDSIMVVNVNNKEGKIKMVSFMRDTLVHIDGVSQQNIPEYDGYYDQKLNTAFTIGEQNNNQGAELVRQMLKDNFDIDIQYYAMVDFKTFATAIDTLFPNGVEMNAQFSTVDGEKVSEVEVPDDLNMKDGVVPQQTIKVGKQRMDGRTLLNYSRFRKDDEGDFGRTRRQQEVMSAIMHQIKDPTKLFTGSEALGKVFAMTSTNVPFSFLLTNGLGLVGSAGKGIERVTIPENGDWVDAYDMYGGQGLLVDFDAYKKKLYQMGLR
>NC_015678.1|WP_013903420.1|347129_347984_+|prephenate-dehydratase
MLVGYLGPKGSFTHDVATHSFPTSERIAYRTITDVIKAYENQEIDFAVVPVENSIEGSVHETLDYLFHQGTIQAVAEVVYPIKQQLLVAKKDRLIRTVYSHPQALAQGKAFLRAHYPNVAMEMTASTAYAARYVAEHPDLEIAAIAPLAAASEYGLEVQAKDIQEIEDNYTRFWILGAKEPAISETLSPALQKVSLALTLPSNLAGALYKGLSTFAWRGINLTKIESRPLKTALGEYFFIIDLLNEAPDLLQFAYQELDSLGIQTKVLGQYQVYTLKENGMEKR
>NC_015678.1|WP_013903419.1|346653_347139_+|shikimate-kinase
MAKILLGFMGAGKTTVGRILDPKFHDMDELIVEEIGMSINDYFAVEGEAAFRRREAEMLERLLENEAAIISPGGGIVVNPHNRALLEKNPHNIYLRVNFETLYSRIQNDKAMQRPLFLNNTKEEFKKIFDGRLPLYEAIATHIVDVEDKTPEEIAEIIRCL
>NC_015678.1|WP_041818165.1|345377_346661_+|3-phosphoshikimate-1-carboxyvinyltransferase
MKLRTNSKGLKGTIRVPGDKSISHRSIIFGSLAKGETKVYDILRGEDVLSTIQVFRDLGVSIQDDGDVIRIQGVGFQGLQAPTAPLDMGNSGTSIRLISGVLAGQDFAVAMVGDDSLSKRPMDRVAIPLRQMGVEIAGQGERDCPPLHEKGTHQLQPIHYRLPVASAQVKSALIFAALQAEGESTIIEKEKTRDHTEDMIRQFGGEIQVDGKTIRIQGGQEFQGQEVIVPGDISSAAFWLVAGLILPESVIKIENVGINQTRTGILEVIQEMGGDLTMEDRDEKAVSASLTVKTSSLKGIRIDGELIPRLIDELPIIALLATQANGQTVIADAEELRVKETDRIQVVADSLNAMGANVVPTEDGMIITGPTPLHGADLETFGDHRIGMMATIAALLVRDGNVVLDRAEAINTSYPSFFEDLETLLHG
>NC_015678.1|WP_013903417.1|344866_345205_+|YlbF/YmcA-family-competence-regulator
MANIYDLANELSRTLRDLPEYKAVVESKQAIEANPEAKKLFDEYVAFQNKLQGLMQSGQLPTEAVQQEMKDYMEKIQASPIVNEFFTKQQQLSIYLADLEKIIFEPIQDLYK
>NC_015678.1|WP_013903415.1|342476_343643_+|chorismate-synthase
MRYLTAGESHGPRLTAIIEGVPAGLPLSEEDINKELKRRQGGYGRGARMKIESDRVEITSGVRHGLTMGGPITLNVTNLDHQKWLEIMNVAPVEEKKKNLRKITKPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRILEEIGVEVASHIVNFGGIEIAIPGNLTVSEIKEKAAKSEVSIVVPEQEEAVKAYIDQVKKDGDTIGGIVETLVGGVPVGLGSYVQWDKKLDAKIAQGVVSINAFKGVEFGLGFDAGRLKGSQVMDEIIWSEEGGYTRRTNNLGGFEGGMTNGEPILVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDPTALPAAGVVMEAVVATVLATEVLEKFSSDNLEELKEAVANHREFTKNF
>NC_015678.1|WP_041818163.1|341396_342470_+|3-dehydroquinate-synthase
MNVSVPIPGHSYDIVIERGGFNQVGDWLRTLWGDKKVAIISDNRVAKLYASIVEKSLEKAGFQVVRFEFLQGEASKNLTTVSKVYEFLATQGMTRSDGIVALGGGVVGDLAGFAASTYMRGISFVQIPTSLTAQVDSSIGGKTGVNTALAKNMVGTFAQPDGVFIDPEVLSTLGQRELIEGMGEVIKYGLIQDTELWEELEAMDGSVESILEHAESIISHSCLVKRDHVVADELDNGIRLYLNFGHTIGHAIEATAGYGQVMHGEAVSMGMVQLSRVAEEKGLMPKGISQKIEEMCRKFGLPVAYENWDKEALYQALTHDKKARGTSLKLVIVPELGQAAIHQIPLQEVKDFLERKE
>NC_015678.1|WP_013903413.1|340215_341085_+|shikimate-dehydrogenase
MKIDGYTRMAAVIAHPIRHSISPFIHNLAYELTATNAAYLAWDIAEEDLESTISQIRKLDMIGANISMPYKQKVFPYLDEVDEMALKIGSVNTIVHRAGKLKGYNTDGIGFFRSLPMTFSMKNGIMAILGAGGAASAIVAHAIAQGAAEIHLFERSEGYETSKQRLDQLGKNFQFDLQLHYIKDTEKIQTILNKSDLILNATGVGMDGESLPIPESIQFPKEAIIADMIYFPAETPFLKLGRQQGNQTLNGLGMLFYQAEKAFELMTDKDFPADAVWEALKNEYSHFIH
>NC_015678.1|WP_013903412.1|339548_340226_+|type-I-3-dehydroquinate-dehydratase
MKLVVSIMPRSLEEAQQLDSSRYEDADVIEWRADFLEKSEILTVAPAVFEKFAGREILFTSRTRAEGGEMELTNEEYVGILKDIQSIYHPDYIDFEYYSHREVFEEMLEFSNLVLSYHNFQETPENMMEILSELTSFSPKLVKVSVMAHNEQDVLDLMNYTRGFKTLNPEQEYVTISMGKIGKISRLTADLTGSSWSYARVGEESAPGQIPLENMRRIRELLNED
>NC_015678.1|WP_013903411.1|338388_339552_+|class-I-SAM-dependent-rRNA-methyltransferase
MKKLTVSRQVATKIKQGQSLLEKQDFDSLPALDQAVQLLSGDGQSLGVGYLSEQNKGIGWFVSQELVAFDQDFFKKLFIKAKQYRRSYYADETTTAFRLFNQEGDGFGGFTVDLYGEFVVFSWYNPFVFQIKETILAAFQEAFPEVRGGYEKIRFKGLDYESARVYGEEAPQEFLILENGVSYQVFLNDGLMTGIFLDQHEVRGGLVEGLAAGKSLLNMFSYTAAFSVAAAMGGAIETTSVDLAKRSRELSEAHFVANGLALDAHRFVVMDVFDYYKYAKRHDLSYDVIVLDPPSFARNKKRTFSVAKDYHRLVSEALEILNPGGTLILSTNAANVNKDKFKKQIEKGFQGRKHRYVAEYGLPGDFRWNKKEESSNYLKVFTIRVDV
>NC_015678.1|WP_013903423.1|351407_352130_+|MurR/RpiR-family-transcriptional-regulator
MFSYEVVASFNDIENAIYTTILENENISSMTIKELAQLAHVSVGSVQRFCKHLGFDGYSHFKIAYKEYLKNEQIILNNQDNHSLKLFIDYTEQDTFLQLIMEAVAILKNVEQIVFVGIGSSGTLGRYGARYFSNIGKFSMCIEDPWQPVLQNSMEKTCVIALSESGETSQTLKIVQKLKEKGCPVIAITNTLESTLSRLSDCSITYHVPQLFLNGFNITTQVPVILIIEMLMKQLYTTKA
>NC_015678.1|WP_013903424.1|352138_352891_+|MurR/RpiR-family-transcriptional-regulator
MILFDYHKVKGLNNSELSVYNFILQHRDKVATMTIRELSTSINLSTTTIIRFAKKMGFDSYNDLKYALSRSEDKENKHRHYFPIGIPAIQFLQTSVQDEALKKQLSEIADLIVQAKQVIFLGVGTSLSLAEYGSYLFSGIGILSFAITNPFYSLKLHHSNLEDVLVIALSVSGETEEVLTLVQGFKERNAKIVSLTNTDISTLSQLSDINLSYFMPVAYADSSLRSTNLTTQIPVVYFLESLRYQVYLKK
>NC_015678.1|WP_003003486.1|353038_354469_+|6-phospho-beta-glucosidase
MAKIPEGFLWGGAVAAHQIEGGYDKGGKGISIADVMTVGSASHSRQITDGVLPDEYYPNHDAIDFYRTYKDDIQLFAEMGFKCFRTSIAWTRIFPNGDEEEPNEEGLKFYDDLFDQLLAHQIEPVITLSHFEMPYHLVTKYGAWRNRKLIDFFVRFAEVVMERYKDKVKYWMTFNEINNQGAINVPWCSWTNSGVIYQEDENPVEVLQQVIHYQSVASAKVVQLGRKINKNFKIGCMLAMVPFYPNTCDTKDILASQKAMEHRLFHYGDLHVFGERPYYIEAFCRKNNIKLDILPEDLETLKEGCVDYIGLSYYMSDTVTATASEETEELFKDVYTKKNPYIESSDWGWQIDPEGLRYSLNLLYDRYHCPLFIVENGFGAYDKVEPDGIHDSYRIDYLKQHIEQMMLAIEEDGVNVIGYTPWGCIDIVSAGTGEMEKRYGFIYVDKNNNGEGTLQRMKKDSFTWYQKVITSNGNEL
>NC_015678.1|WP_001020606.1|354481_354784_+|PTS-sugar-transporter-subunit-IIB
MNIGLFCAAGMSTSILVERMKEAAQKKGKDATIAAYSISELEQRVGDIDVALLGPQVGFQLEKAKEICASHNVPVEVIAMADYGTANGMAVLKQAYMMKK
>NC_015678.1|WP_041818169.1|354794_356108_+|PTS-sugar-transporter-subunit-IIC
MKDKLIKKFVDRMMAFVNTKGVTAIKDGIVFSMPLLIVGSIFLILANLPVPALATMLETSGITPVLNQAIGATFNISAIVTVIGIAYTYAKLEKQEPLGAGVIALAVFLLIQPSSLISKNGDVVGNIILKDWTSGKGMIGAIIVGLIVGASYSWFLKKNIKIKMPDGVPTGVANAFSALIPATVIITAATIFVGLVEQLFKVTTIEVIYNLIQTPMQGLTDSLFGAVLMCFLVPFLWMFGVHGSTVVGGIMSGLLQANALENQAILDKGLELNLANGGHIVTIQFFDQFINVTGAGITIGLVVYMVAFAKSKQLKILGRLEMVPAIFNINEPVLFGLPIVMNPVLAIPFILTPILSCIIQYSAIYFGLTPMYGAVQVPWTCPPIISGFIIGGWKTALLQTLILVMSFFVYYPFIKQMDKQDLQAEIQETSDLEDEDW
>NC_015678.1|WP_013903427.1|356121_356442_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MDEKVLEVCFQIITYVGTAKSMYIDAIQLARQGEFEQAKDRIKQGEEAYVQGHNAHHSLLTKEMNGELSQTGLLLMHAEDQLMSAEGFRTIAEEFIAVYKRFEEGK
>NC_015678.1|WP_013903430.1|359001_359493_+|phosphoribosylanthranilate-isomerase
MSLLFEEFKTICFHLNRVGITPTLMGSLGLEFRTKENWGPSDIDIHVPGDPRGWEAPDHLRIYDWDKIMKAMKDLGYVLIDIHEHEFQKDRVSVEFGSIDSLPDFAGVSESDIELIHTEGITFRLPSLEQYLSIYKASSQDSYRNDHNNNKDFKKIEWLERHL
>NC_015678.1|WP_013903431.1|359774_360098_+|TfoX/Sxy-family-protein
MASSKEYLDFILEQLSELEEISYRAMMGEYIIYYRGKIIGGIYDDRFLVKPVKSAIAYMPNVEYELPYEGAKEMLLVDDVDNKEYLTGLFNSMYDELPAPKPKKKKL
>NC_015678.1|WP_013903432.1|360343_360772_+|GNAT-family-N-acetyltransferase
MDGITKDSIKTAKLMKQLWPQLTDKEAIDEVKKYTNGKNTAIFTEVEGDTIVGLALCSLRFDYVEGCKYSPVGFLEGIIVDEEYRLKDIAKNLCTKCEEWAKNKGCKEFASDCTLTNTDSIRFHLNIGFQEANRIIHFKKKL
>NC_015678.1|WP_013903433.1|360892_361768_+|phosphotransferase
MDFSGKIAINKGWSDDKKYCVTDQKQQKYFLRVSDKEKLDSKKFEFDMMEKVASLGVPMCKPISIELCDDKVHSFHEWIDGKDARETILTVSKEQQYIYGVEAGRILQKIHSLPVTEVREDWEVFYNRKIDDKIKKYKECPVQYENGQIFIDYLNANRELLKDRPQVFQHGDYHIGNFMIGEDRKIYVIDFDRFDLGDPWEEFNRIVWSAQVSPSFASGMIDGYFDGKVPDLFWKLLAIYILNNIVGALSWAVPYGAEEISVMKHQAKEILEWYDDMKQIIPSWYLIEKKA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_015678_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015678_3

407415-408711

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	PILER-CR
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	CRT

19 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_015678_3

>merge|NC_015678|3|407415-408711|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAATTTAGCAAAATTGGGGTGTTTTATCCTCAATATAGCGTCGCTCCCTTCACGGGGGCGTGGATTGAAATCATTCACGTAGATATTCCTTCATTGCCTGAATGTCGTGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTGGTTCGCCTTTTGTATTTATGATCGTTCTCATCATGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTACACTCTTTTTGACGCTTTGCAAGTCAATAAGAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATAAATTAATTATAAAGGTCAATCAAATTAGAATTTGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTTCCAAGACCTGATCCAAGTTAGTCGCTAGAGCCGTCGCTCCCTTCACGGGGGCGTGGATTGAAATAGAAGAATATTTACAACCTTCTTGCTTCTCAATGTCGCTCCCTTCACGGGGGCGTGGATTGAAATACCAAAAGATCCTAAGAACACAGAAAATCCAAAAGTCGCTCTCTTCACGGGGGCGTGGATTGAAATCAGATTTTTTTGTAGCTCCTTGCGCTGCTCTGGGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTGATGATTATAAATATCTTGCAGAAGAAACTAAAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTTCCCCAGTTAATTCCAAAAACTACACTAATAAGGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTTGACTAATAATAGTTGGCTTCACTTTCCCATCAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTAAAACAAAATAAAAAAAGCCGACCAGTGCCGACGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTTTGGATTATGGACAAGGATACCAGAAATTATCGGGTCGCTCCCTTCACGGGGGCGTGGATTGAAATATGGCCCGAAATAACCAAGTGGCACAAAGCCTCGGGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTCGTCCCATTGGTAGCGTTTATGCTCCTCAATAAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTCGACCCAACTTTTTAGCATTAAAGGTGAACAAGCACGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTGGTTTTACCCAAGGATCGCAAATAACCCTATAATGTCGCTCCCTTCACGGGGGCGTGGATTGAAATATCCGCAGCGCTTTCTGGGCTGACTAAGGTAGCCGGTCGCTCCCTTCACTGGAACGTGTTGTGAATT

>NC_015678|3|1|407415-408644|PILER-CR
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTAGCAAAATTGGGGTGTTTTATCCTCAATATAGC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	CATTCACGTAGATATTCCTTCATTGCCTGAATGTCGT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGGTTCGCCTTTTGTATTTATGATCGTTCTCATCAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TACACTCTTTTTGACGCTTTGCAAGTCAATAAGA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	AAATTAATTATAAAGGTCAATCAAATTAGAATTT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTCCAAGACCTGATCCAAGTTAGTCGCTAGAGCC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	AGAAGAATATTTACAACCTTCTTGCTTCTCAAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ACCAAAAGATCCTAAGAACACAGAAAATCCAAAA
GTCGCTCTCTTCACGGGGGCGTGGATTGAAAT	CAGATTTTTTTGTAGCTCCTTGCGCTGCTCTGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGATGATTATAAATATCTTGCAGAAGAAACTAAA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTCCCCAGTTAATTCCAAAAACTACACTAATAAG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTGACTAATAATAGTTGGCTTCACTTTCCCATCA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TAAAACAAAATAAAAAAAGCCGACCAGTGCCGAC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTTGGATTATGGACAAGGATACCAGAAATTATCGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ATGGCCCGAAATAACCAAGTGGCACAAAGCCTCGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TCGTCCCATTGGTAGCGTTTATGCTCCTCAATAA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TCGACCCAACTTTTTAGCATTAAAGGTGAACAAGCAC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGGTTTTACCCAAGGATCGCAAATAACCCTATAAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT

>NC_015678|3|3|407415-408711|CRISPRCasFinder
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTAGCAAAATTGGGGTGTTTTATCCTCAATATAGC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	CATTCACGTAGATATTCCTTCATTGCCTGAATGTCGT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGGTTCGCCTTTTGTATTTATGATCGTTCTCATCAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TACACTCTTTTTGACGCTTTGCAAGTCAATAAGA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	AAATTAATTATAAAGGTCAATCAAATTAGAATTT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTCCAAGACCTGATCCAAGTTAGTCGCTAGAGCC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	AGAAGAATATTTACAACCTTCTTGCTTCTCAAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ACCAAAAGATCCTAAGAACACAGAAAATCCAAAA
GTCGCTCTCTTCACGGGGGCGTGGATTGAAAT	CAGATTTTTTTGTAGCTCCTTGCGCTGCTCTGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGATGATTATAAATATCTTGCAGAAGAAACTAAA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTCCCCAGTTAATTCCAAAAACTACACTAATAAG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTGACTAATAATAGTTGGCTTCACTTTCCCATCA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TAAAACAAAATAAAAAAAGCCGACCAGTGCCGAC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTTGGATTATGGACAAGGATACCAGAAATTATCGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ATGGCCCGAAATAACCAAGTGGCACAAAGCCTCGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TCGTCCCATTGGTAGCGTTTATGCTCCTCAATAA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TCGACCCAACTTTTTAGCATTAAAGGTGAACAAGCAC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGGTTTTACCCAAGGATCGCAAATAACCCTATAAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ATCCGCAGCGCTTTCTGGGCTGACTAAGGTAGCCG
GTCGCTCCCTTCACTGGAACGTGTTGTGAATT

>NC_015678|3|1|407415-408711|CRT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTAGCAAAATTGGGGTGTTTTATCCTCAATATAGC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	CATTCACGTAGATATTCCTTCATTGCCTGAATGTCGT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGGTTCGCCTTTTGTATTTATGATCGTTCTCATCAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TACACTCTTTTTGACGCTTTGCAAGTCAATAAGA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	AAATTAATTATAAAGGTCAATCAAATTAGAATTT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTCCAAGACCTGATCCAAGTTAGTCGCTAGAGCC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	AGAAGAATATTTACAACCTTCTTGCTTCTCAAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ACCAAAAGATCCTAAGAACACAGAAAATCCAAAA
GTCGCTCTCTTCACGGGGGCGTGGATTGAAAT	CAGATTTTTTTGTAGCTCCTTGCGCTGCTCTGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGATGATTATAAATATCTTGCAGAAGAAACTAAA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTCCCCAGTTAATTCCAAAAACTACACTAATAAG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTGACTAATAATAGTTGGCTTCACTTTCCCATCA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TAAAACAAAATAAAAAAAGCCGACCAGTGCCGAC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TTTGGATTATGGACAAGGATACCAGAAATTATCGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ATGGCCCGAAATAACCAAGTGGCACAAAGCCTCGG
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TCGTCCCATTGGTAGCGTTTATGCTCCTCAATAA
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TCGACCCAACTTTTTAGCATTAAAGGTGAACAAGCAC
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	TGGTTTTACCCAAGGATCGCAAATAACCCTATAAT
GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT	ATCCGCAGCGCTTTCTGGGCTGACTAAGGTAGCCG
GTCGCTCCCTTCACTGGAACGTGTTGTGAATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015678.1\|WP_041818178.1\|411164_412538_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_015678.1\|WP_041818179.1\|412700_413372_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_015678.1\|WP_013903475.1\|396886_397159_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|168880
NC_015678.1\|WP_013903476.1\|397151_398369_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|239654
NC_015678.1\|WP_013903480.1\|404420_405269_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_015678.1\|WP_013903492.1\|418666_419377_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NC_015678.1\|WP_041818474.1\|417277_417991_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181323
NC_015678.1\|WP_003003254.1\|398492_398840_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NC_015678.1\|WP_013903479.1\|402524_404417_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
NC_015678.1\|WP_013903483.1\|406974_407268_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_015678.1\|WP_003015673.1\|415234_416044_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NC_015678.1\|WP_013903488.1\|413465_414677_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_015678.1\|WP_013903477.1\|399310_401710_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015678.1\|WP_013903478.1\|401796_402525_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_015678.1\|WP_013903489.1\|414678_415221_+\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226319
NC_015678.1\|WP_013903481.1\|405270_405942_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|224385
NC_015678.1\|WP_041818177.1\|409905_410718_+\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|225217
NC_015678.1\|WP_041818180.1\|416030_417281_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238505
NC_015678.1\|WP_013903482.1\|405938_406964_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015678.1\|WP_013903484.1\|408821_409790_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015678.1\|WP_041818178.1\|411164_412538_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NC_015678.1\|WP_041818179.1\|412700_413372_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	1.85662e-115
NC_015678.1\|WP_013903475.1\|396886_397159_+\|chorismate-mutase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	3.87806e-28
NC_015678.1\|WP_013903476.1\|397151_398369_+\|chloride-channel-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	4.88022e-154
NC_015678.1\|WP_013903480.1\|404420_405269_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	3.63616e-135
NC_015678.1\|WP_013903492.1\|418666_419377_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.7412e-153
NC_015678.1\|WP_041818474.1\|417277_417991_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|181323	PRK08250, PRK08250, glutamine amidotransferase; Provisional.	4.01033e-153
NC_015678.1\|WP_003003254.1\|398492_398840_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	7.70958e-69
NC_015678.1\|WP_013903479.1\|402524_404417_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	2.3211e-132
NC_015678.1\|WP_013903483.1\|406974_407268_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.55817e-32
NC_015678.1\|WP_003015673.1\|415234_416044_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	2.08579e-165
NC_015678.1\|WP_013903488.1\|413465_414677_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_015678.1\|WP_013903477.1\|399310_401710_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43691e-98
NC_015678.1\|WP_013903478.1\|401796_402525_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.06374e-98
NC_015678.1\|WP_013903489.1\|414678_415221_+\|DUF1697-domain-containing-protein	gnl\|CDD\|226319	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown].	1.15169e-49
NC_015678.1\|WP_013903481.1\|405270_405942_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	2.27738e-28
NC_015678.1\|WP_041818180.1\|416030_417281_+\|chloride-channel-protein	gnl\|CDD\|238505	cd01033, ClC_like, Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	3.42503e-85
NC_015678.1\|WP_013903482.1\|405938_406964_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015678.1\|WP_041818177.1\|409905_410718_+\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|225217	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones].	5.92064e-22

>NC_015678.1|WP_013903483.1|406974_407268_+|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTETAKGRKRLRHVAKLCVDYGQRVQNSVFECSVAPAEFVEIKSKLLDIIDPDSDSIRFYFLGKNWQNRVETIGRDTSYDPDIGVLIL
>NC_015678.1|WP_013903482.1|405938_406964_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYLTQDNFYLTRERDNIVIKQEGKVISRFPYRIIDGIVCFSYLGASPSLIELCAENQINISFHTPQGRFCGRFVGATNGNVLLRRQQYRLADAELSLEYAQRFILAKISNSRKYLLRFKRDHRDRIDTHLFEEVNTELTWALEQVQSVEDKNSLLGIEGQAANQYFRIFNDFILNDKATFQFNGRTRRPPLDCVNALLSFGYSLLTYECQSALEAVGLDSYVGFFHTDRPGRASLALDLVEEFRTFIVDRFVFSLINKGQISKKDFEFKENGSVFLSEKGRATFLELWQKRKHMEVEHPYTKEKVKMMLLPYVQAQLLAKAIRGELESYPPFMI
>NC_015678.1|WP_013903481.1|405270_405942_+|CRISPR-associated-protein-Cas4
MVYAENDYLMLSGIQHFQFCKRQWSLIHIEQQWSDNEATAHGQILHKKADDPYIKEKRNDVIISRAMHVSSKELGLYGILDVVEFHKDERGIELKGRSGKWLPIIVEYKRGKDKKDIYDIVQLVAQAICLEETLECTIEYSYLYYHRVNQKKRIEITPELRKEVVSLASQMHEYYEQKVVPKAEYFKNCQLCSLVDICMPRLSKKNRNIDNYIFHALKSEDGL
>NC_015678.1|WP_013903480.1|404420_405269_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLENKIDFMVTIEVREANANGDPLSGNMPRTDAKGHGLISDVAIKRKIRNRMQDFGHPTFVQAGDRIEDEFRSLEKRFSNQFNSKDSDEDIEDQANKLWLDVRSFGQVFTYLKKSIGVRGPVSINMAKSLEPIVISGLQITRSTNGMEAKNESGRSSDTMGMKYFVDYGVYLLKGSINPNFAEKTGFSTEDVEVIKQALVSLFENDASSARPEGSMRVREVFWFTHSNKLGNISSARVFDLFEFDKENQEKNTYEDYGIHLNQEKLAEYENKGLKVDILEGL
>NC_015678.1|WP_013903479.1|402524_404417_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKAYEKAEEIGLVDQRTGDNDPVLLPLYHTSLKSNGNNIILIKLNKDGTFYKAEFMPDNQSIIFPVTSDSVARSGSNPAPHPLVDKLSYYVQEVSQSQYEEFHNQLANWVCFCKEDEVKDYLEKIQRFILRADFLNIVLNSLFGESYQRENLKVTYQDSNEKSKTIDLSACFIEFSIVQYHGFKDESVTTYKELHQSFISFVRAFQDNMGVCNISGRNETITNKHRGLMGNAKIISVSNKVEAYKGRFKEREDVFSVGYETSEKIHLMIKYLLENNNSSTWLGSSQYLINWFSDDLANKSQLDIVKPEFDSLFEDEEDDIEERHQLIRPNAENQEIGSSFIKGRKLFGNDATYYIAILNKTSNGRIALKYFRQLQVSQLLKNLENWQDTYSWEARTKSGTYKQKTPNFNEIINAAYGVDRGRYLELDNDSFRSDQYQQLVTALIDGKSIPNTIVKKLEANIKHRQNYPKCWHSLQQVSLAVLHKQYGREFNPMVDHENTNRSYLFGRLLAIFELMEAQRYRIEGGNQERITNAERYWNAYTSQPAKLMMNLANKIKPYEETVKLNSRGIYNKLEKEREEIISLLSPLMMNKDINDPLDYQFIFGYYSEKQYFYTKKEKYESEN
>NC_015678.1|WP_013903478.1|401796_402525_+|type-I-C-CRISPR-associated-protein-Cas5
MYRSRNFYARIRGDRALFTNPATKGGSERSSYSVPTRQALQGIVDGIYHKPTFTNVITEVKVVNQIQTELHGIRALLHDYSADLSYVSYLSDVEYLVKFYFVWNENREDLIQDRQANKHEAIMERSIRKGGRRDVFLGTRECFALVDEISQEEYENCPSYYDGFSIDLGIMFHSFAYPTDKKTPLKSYFAKTVMENGIIKFKSQKECEIVNTLSSYAFKLPSQIKSVDDEFNEYEEMEKGES
>NC_015678.1|WP_013903477.1|399310_401710_+|CRISPR-associated-helicase/endonuclease-Cas3
MILAHKDNNGNVQSLQDHSFNVATKAREDANAIDQGDILFLLGLYHDLGKANQEFQDKLLLHPNKHVDHSSAGARYLFQKIQVCLKSLNVEKTDREFFQEICAYVISSHHGMYDILLQDETINASQYAYNRLRYRIIEGTESNRYQEDIEPFAQKLESQLPYYGYCSLDDLIKKSFENYQQAWSNLKWSDESEKDFYSSCFIRLYLSLLKNADILDTINAYGIIVQPLKSEEREELNQSYLNAIEEKYRGFDNPTTRLNEVRLQISERVKERGENDSAGIYRLDLPTGAGKTNLSMRYAFHQLVKQKKSRYFYITPFLSVLEQNASEIKKITGDAGVLEHHSNVIHKDDDNDDKKTLMLDYLIDSWDSQIILTSMVQFFQTLFKTKSSNIRRFSNLANSVLILDEVQSLPIEVTTLFNLTMNFLNKVMNTSIILCTATQPAYDSPVITNRLDYGGKNGECPDIVELTHDETEVFARTELRKYNEENQHTNLAELVDFVLDNNESILAIFNTKKTVDKFYTMLEELTDRPLYQLSTNMCAQHRFDMISEIKQHLQDGVPIICISTQLIEAGVDVDFNQVIRSYAGIDSIVQASGRCNREGKRQKGQVTLVNLKNEEENISRLKEIKNKKEATEFILHENSSPIDTSLLNKDFFEYYYANNQASMDYPLSHGESVFDYLSINEYQLRPNFKGRMKQAFKTAGQKMNLINNETIGVLVPYGDAIEKLSRLEEICESDYPSEGEFQIIKSLLKELQSYTVNVREHDPILEATKSYLNGNVLVLSDGYYHEKKGITIEMLNFIM
>NC_015678.1|WP_003003254.1|398492_398840_+|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGSRERIQIFEGVVIARKGQGHTEMYTVRKISNGVGVERTFPVHTPRVEKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR
>NC_015678.1|WP_013903476.1|397151_398369_+|chloride-channel-protein
MTSLSIKQKAQQYVVLTGMALFIGLLVGAIDMIFGQGLLLIGDFRSQHWPLILFLALAGFVIVYLYKRFGGKASKGMGLIFDVGHAREEEIPLVLVPLIMLTTWMSHLFGGSVGREGVAVQIGATLSHRFARYIKIPDASRIFLMTGMAAGFAGLFQTPLAATFFALEVLTVGELQLMALYPALIASIVASFTSHALGLEKFAVPLRETLSWTPETLIKVALLGLAFGLAGKLFAVSLSWLKKTVAQVLPNPYIRIALIGAGLSLVLLNLQLTKVGTYSGLGTNLIDVAFHQGSAQSYDWILKLLFTVVTISAGYQGGEVTPLFAIGATLGVFLAPMLGLPVLVVAAIGYASVFGSATTTLLAPILIGGEVFGYANLPFFVIACAIAYCLPKEWSIYSGQKVAKK
>NC_015678.1|WP_013903475.1|396886_397159_+|chorismate-mutase
MDLDQIRKDIDQIDQELVALLERRMVCVGQIVEYKEQQGLPVLDQGREREVLEKVGSLVTDDQYRTTIQAQFQDMMKRSRDFQEEVRARD
>NC_015678.1|WP_013903484.1|408821_409790_+|hypothetical-protein
MKKGLVIVLSALVLASCGRPQRTVTPKSSDTKQTSTSEKKQSGMDLKAIKAKDYSSIKGTWIDGRGNELVFDDKGLVSEDVELDASSFKQKDQIAEMTVSAKSGVGGYGLLLLPKGQKAGKDDVSDKSKDRIWAGQSPAYGDDDNFYYRKKEQPKDREQVDTDDSSSTSKSSKGKKWNTRSDSEVKSSKKADKNDYPGYTDAQVEAARVWAYVIKNVPSELNISNSAAGTKIYNGGLGVDYPKDVRHLFGSYSAEGNITYASNGDGTVTIYPVPSHWHQSADELNSEEFMTQFTQGILDHAETVTLPDGDPDMIRQILAVLK
>NC_015678.1|WP_041818177.1|409905_410718_+|PrsW-family-intramembrane-metalloprotease
MKRKSILFLYLLLLAIGLAYETQSLTEGWMSGSQYGIVGLSTLILLVYALPAVWALFHFAKKWKLSWVPVLFSLLGGGFVAGWLSSFANTYFHDMIQAIAPNSDFWNQYESAIAAPLFEEPFKLIPIFFVLYLFGVRRIKSIFLLAIASGLGFQIVEDFAYIRQDLPEGFSYTVSGILGRVANAPMSHWVYTGLVMLGLFLIVQASRGRKDLRLVGWGYLVAGFGLHFVGNSPFSQIVTELPIAIPVLNATGLFLIYQAYQTVERLEQAK
>NC_015678.1|WP_041818178.1|411164_412538_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MITKEFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKDLTSVASHTLNYGHIVDPDKNEILDEVMVGAMRSPKTFTREDIIEINTHGGIAVTNEILQLVIREGARLAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNIAVKQLDGSLSDLINNTRQEILNTLAQVEVNIDYPEYDDVEEATTEIIREKTSEFEALLTNLLKTARRGKILREGISTAIIGRPNVGKSSLLNNLLREEKAIVTDIEGTTRDVIEEYVNINGVPLKLVDTAGIRETEDIVEQIGVERSKKALKEADLVLLVLNASEPLTDQDRQLLEISQDSNRIILLNKVDLPEKIEIDQLPEDHIKISVLKNQNIDQIEDRINALFFENAGLVEQDATYLSNARHISLIEKAVESLQAVNEGLALGMPVDLLQVDLTRTWEILGEITGDAAPDELITQLFSQFCLGK
>NC_015678.1|WP_041818179.1|412700_413372_+|ribose-5-phosphate-isomerase-RpiA
MVNLKEQVGIKAAEFVKDGMIVGLGTGSTAYYFVAELGRRIKEEGLKITAVTTSSVTYDQAESLDIPLKAIDDVEVVDVTVDGADEVDPQLNGIKGGGGALLMEKIVATNSKDCIWIVDESKQVATLGAFKLPVEVVQYGAENLFRHFEQKGYHPAFRLADDQRFITDQGNFIIDLDLKVIKDAEALANELDHTVGVVEHGLFLNMISKVIVGTPDGPVIIEK
>NC_015678.1|WP_013903488.1|413465_414677_+|phosphopentomutase
MSKFKRIHLVVLDSVGIGAAPDSNNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIPREVALKTVPAESNPTGYATKLQEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFAPTVLDKLNEAGIDTYAVGKINDIFNGAGINHDMGHNKSNSHGMDTLIKTMELPEFQEGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDERLPEIIAAMREDDLLMITADHGNDPTYAGTDHTREYIPFLAYSPSFKGNGVIPVGHFSDISATIAENFGVEKAMIGESFLDKLN
>NC_015678.1|WP_013903489.1|414678_415221_+|DUF1697-domain-containing-protein
MTRFALLIRGINVGGKNKVVMAQFRQELMELGLEQVETYINSGNIFFTTGLSRSQLVECLSIFFENHYPFIERFSLLSREDYEAECANLPQWWTEEMARKDVLFYTEGLDRESVEEKLLALELGDEVLHPGKTAVFWGKSSEESYAKTAYHKHLMKMPFYRQITIRNVNTFDKIGTLLKK
>NC_015678.1|WP_003015673.1|415234_416044_+|purine-nucleoside-phosphorylase
MTLLAKINETAAFLKGKGMEAPEFGLILGSGLGELAEEIENPVVVDYSEIPNWGRSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPLEVVTFPVRVMKVLGCEGVLVTNAAGGIGFGPGTLMAITDHINMTGQNPLIGENLDDFGPRFPDMSKAYTPEYRETAHKVADKLGIKLDDGVYIGVTGPTYETPAEIRAYKTLGADAVGMSTVPEVIVAAHSGLKVLGISCITNFAAGFQEELNHEEVVEVTERIKGDFKGLLKAILAEL
>NC_015678.1|WP_041818180.1|416030_417281_+|chloride-channel-protein
MLNSNPMKVRLQRLPYGLRVLLATLSLGIGTGLVGIACHYLLEGVQELAFGQDTSDLLQQFQEAGGLRRFLVLCVTGCLAAGFWYVLQKRYKILSIRQQIDLAGDRDPTPFAHLLHAGMQVAIVGAGASVGKEGAPREVGALLAGRLAKGFSLALKERKVLIACGAGAGLAAVYQVPFASSLFVFETLGLAYSWQNFLLVLTSTYLATWVAQSIVGQEAIYHLSAVSWSASSFLQAIVIAFLVTPLALVFAFLAKQASHKRRNDGTILWALPLAFLVLGSLVAFFPIFMGNGQVLAQALLSSQSIPYLPLTLAVKGLIVYLLLRNGAYGGTLTPSFALGIGSGYLVTLLMTVVGIHLDPALGMLLGATVFLGTTLQAPLTAIALSLGFTGQAWNLTIPLVLAAGLSYVIRKRWEKK
>NC_015678.1|WP_041818474.1|417277_417991_+|type-1-glutamine-amidotransferase
MMKVHFVLHETFEVPGAYLKWAQERGHQVTTTKVYENEALPETVDEIDFLIVMGGPQSPDEDREAFPYYDPQAEIELIQKAMKADRYIVGVCLGAQLLSVAYGAKYEHSPEREIGVFPVTLTPEGLKDPHVGEFGETLETGHWHGDMPGLTEDAVVLATSQGCPRQMIRFSPKHYAFQAHLEFDPEAVDLLIAADGEAVLEDQSQNLTFVQKPEAIRAYDYREMNAKLFAFLDSLTN
>NC_015678.1|WP_013903492.1|418666_419377_+|purine-nucleoside-phosphorylase
MSIHIAAKHGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRNMFGYTGTYKGHRVSVMGTGMGMPSISIYARELIVDYGVKKLIRVGTAGSLNEDVHVRELVLAQAAATNSNIIRNDWPQYDFPQIASFDLLDKAYHIAKDLGMTTHVGNVLSSDVFYSNYGEKNIELGKWGVKAVEMEAAALYYLAAQHHVDALAIMTISDSLVNPDEDTTAEERQNTFTDMMKVGLETLIAD

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Crispr_ID: NC_015678_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015678_4

505220-505297

Orphan

Consensus_repeat	Method
AAGGTCCCCCGGACCTTTAAACTCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015678_4

>merge|NC_015678|4|505220-505297|CRISPRCasFinder
AAGGTCCCCCGGACCTTTAAACTCGCTTTGCTAATTTTTGGCTCATGAAAAAAAGGTCCCCCGGACCTTAAACTCGCT

>NC_015678|4|4|505220-505297|CRISPRCasFinder
AAGGTCCCCCGGACCTTTAAACTCGCT	TTGCTAATTTTTGGCTCATGAAAA
AAAGGTCCCCCGGACCTTAAACTCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015678.1\|WP_013903565.1\|509249_510227_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_015678.1\|WP_013903568.1\|512272_513217_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|235964
NC_015678.1\|WP_013903566.1\|510201_511029_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293816
NC_015678.1\|WP_013903560.1\|501010_502267_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NC_015678.1\|WP_013903564.1\|507975_509253_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340817
NC_015678.1\|WP_013903556.1\|497861_498449_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NC_015678.1\|WP_013903562.1\|504090_505101_+\|DUF1002-domain-containing-protein	unknown	unknown	gnl\|CDD\|226571
NC_015678.1\|WP_013903570.1\|513661_515233_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_015678.1\|WP_013903559.1\|500360_500972_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NC_015678.1\|WP_013903563.1\|505342_506908_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_015678.1\|WP_013903555.1\|495787_497506_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NC_015678.1\|WP_013903567.1\|510994_512260_+\|coenzyme-F390-synthetase	unknown	unknown	gnl\|CDD\|274074
NC_015678.1\|WP_013903558.1\|499537_500368_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_015678.1\|WP_013903557.1\|498458_499538_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NC_015678.1\|WP_013903571.1\|515299_516067_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|283645
NC_015678.1\|WP_003007284.1\|503249_503852_+\|lysozyme-family-protein	unknown	unknown	gnl\|CDD\|372680
NC_015678.1\|WP_001117401.1\|497564_497747_-\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|179406
NC_015678.1\|WP_013903561.1\|502275_503250_+\|nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|377262
NC_015678.1\|WP_013903569.1\|513288_513630_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NC_015678.1\|WP_003016564.1\|507036_507735_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099

Protein	Function_ID	Function_description	E-value
NC_015678.1\|WP_013903565.1\|509249_510227_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.17506e-56
NC_015678.1\|WP_013903568.1\|512272_513217_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|235964	PRK07204, PRK07204, beta-ketoacyl-ACP synthase III.	9.73491e-87
NC_015678.1\|WP_013903566.1\|510201_511029_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293816	cd07730, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. Some members of this subgroup are annotated as GumP protein.	1.08317e-64
NC_015678.1\|WP_013903560.1\|501010_502267_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NC_015678.1\|WP_013903564.1\|507975_509253_+\|glycosyl-transferase	gnl\|CDD\|340817	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins. This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.	3.35002e-29
NC_015678.1\|WP_013903556.1\|497861_498449_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.66581e-110
NC_015678.1\|WP_013903562.1\|504090_505101_+\|DUF1002-domain-containing-protein	gnl\|CDD\|226571	COG4086, COG4086, Predicted secreted protein [Function unknown].	8.75111e-68
NC_015678.1\|WP_013903570.1\|513661_515233_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_015678.1\|WP_013903559.1\|500360_500972_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	3.56964e-63
NC_015678.1\|WP_013903563.1\|505342_506908_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_015678.1\|WP_013903555.1\|495787_497506_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NC_015678.1\|WP_013903567.1\|510994_512260_+\|coenzyme-F390-synthetase	gnl\|CDD\|274074	TIGR02304, conserved_hypothetical_protein, putative adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.	6.55845e-162
NC_015678.1\|WP_013903558.1\|499537_500368_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	4.92014e-100
NC_015678.1\|WP_013903557.1\|498458_499538_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NC_015678.1\|WP_013903571.1\|515299_516067_+\|alpha/beta-hydrolase	gnl\|CDD\|283645	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915). This family consists of several bacterial proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.	6.31669e-45
NC_015678.1\|WP_003007284.1\|503249_503852_+\|lysozyme-family-protein	gnl\|CDD\|372680	pfam13702, Lysozyme_like, Lysozyme-like.	9.63907e-75
NC_015678.1\|WP_001117401.1\|497564_497747_-\|4-oxalocrotonate-tautomerase	gnl\|CDD\|179406	PRK02289, PRK02289, 4-oxalocrotonate tautomerase; Provisional.	1.21761e-32
NC_015678.1\|WP_013903561.1\|502275_503250_+\|nucleoid-associated-protein	gnl\|CDD\|377262	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein.	2.0763e-28
NC_015678.1\|WP_013903569.1\|513288_513630_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	2.28012e-50
NC_015678.1\|WP_003016564.1\|507036_507735_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.06334e-82

>NC_015678.1|WP_013903562.1|504090_505101_+|DUF1002-domain-containing-protein
MKLKKIALFVTTTLALFTAIPRVSADSNVQKVIDETYVKPDFVLGYSLDQSQIEQTLSLLNYDSSKDKEEWKTMTPEVYSSIMNVANDDSLELYSSVKIQKLGKNKPLEVNIVTPQNITKVTADMYRNAAVTLGLEHAQITVASPILVTGESALAGIYYSLEKNGAKVSQESKDLAQEELKTLSGINEENAGKKNFDADKLNVALTDIKTAVANAKQNNQDLSKDDIRKIVEETLKNYKLDTTVTGDQINLIVNFAVNLSKSSVISSKSFTKTLSDLKDSIVDKAGDTFNNINLNFDTNAILKDSGNFFTNAWNAIAGFFGAIWNAIVKFFSGLVG
>NC_015678.1|WP_003007284.1|503249_503852_+|lysozyme-family-protein
MIKRIVKIFLFILLIFGIYKGIQIHHDVKQVMQYRSLVREVLAEEDTTANENLILAMIYTETKGREDDVMQASESASGETNTISDNKASIRQGIQTLSDELKEAKKKGVDSWTAVQAYNFGKDYIDYVAKHGGTNSLELARAYSRDVVAPSLGNVTGETYLYLHPISLLNGMELYINGGNIYYSRLVETNMTIMKLFSWF
>NC_015678.1|WP_013903561.1|502275_503250_+|nucleoid-associated-protein
MDIYVKKAIIHQFSPDDTDLYLADKFLNITPKIEEYLRKKIERVYSDEAKTGIFEEDNPFLEMISDDLLETSVAVANRWKEEFVVSENQKTNDLVFVEFSKEGVDHFAFLRIALRETLTHLGGEVDNPIKLTQNNLPGFGTGADEALVINLQSRKYHLIEKRIKYNGTFLNYFSENLLQAQPKISPKKSIKALEKTAQKIAESFNTDDFQFQSKVKSAIFNHIEEENKLSPEKLADDLFDDNLTARLSFIDQVKEAVPEPVTFEEIDASRQLKKFENQKLSLSNGIELIVPNNVYEDAESVEFILNDNGTYSILIKNIEDIQSK
>NC_015678.1|WP_013903560.1|501010_502267_+|serine-hydroxymethyltransferase
MIFDKEDYKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYPGRRYYGGTDVVDVVESLAIERAKEIFGAKFANVQPHSGSQANCAAYMALIEPGDTVMGMDLAAGGHLTHGASVSFSGQTYNFVSYSVDPETELLDFDAILKQAQEVKPKLIVAGASAYSHIIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLILTNDEELAKKINSAIFPGIQGGPLEHVIAAKAVAFKEALDPAFKEYAANVIKNSQAMADVFLQDPDFRVISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYETLSPFKTSGIRIGAAAITARGFGEKESRTVAELMIKALKNADKQEVLDEVRSQVKALTDAFPLYED
>NC_015678.1|WP_013903559.1|500360_500972_+|threonylcarbamoyl-AMP-synthase
MDNIEKELEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPRDKALNLNVADEKTIRIYSKNQPSYLTKLIHSFLPGPLTIILQANDKVPDWIHSGLDTVGFRIPAHPKTLELIRKYGPLVGPSANLSGHASGTKYEAIVSEFDQVVPGIEDDDFLTGQDSTILDISGSKARILRQGSITKTDLLAQVPELSFEEDELPQ
>NC_015678.1|WP_013903558.1|499537_500368_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MLLGPLLAQYEEELIAVGEEAESLSFAYRALKNWTFTDFVLALQKEVEVEDQALLDSIFEQLKHHVPAQYIIGSAEFCGHVFTVDERVLIPRPETEELVTLILEENDEKALRVLDIGTGSGAIAISLALAKPTWQVQASDVSEEALALAQKNAKQLEAFLEFKSSDVLEQLAGPYDLIVSNPPYISRDDVEEVGANVLASEPHLALFADRDGYAIYEKIAQQAPSVLTPDGKIYLEIGYKQGAKVKELFREAFPDKRVRVLKDQFGQDRMVVVDNG
>NC_015678.1|WP_013903557.1|498458_499538_+|peptide-chain-release-factor-1
MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNIVDAEEMIKEAGDDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGAAGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRIDIYHASGAGGQNVNKVATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELNK
>NC_015678.1|WP_013903556.1|497861_498449_+|thymidine-kinase
MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKSVVIMTSAIDTRDGVGVVSSRIGMKREAVAIEDDTDIFGFIKNQAIKPYCVLIDEAQFLKRHHVYDLARVVDELDVPVMAFGLKNDFRNELFEGSKHLLLLADKIEEIKTICQYCSRKATMVLRTQAGKPVYDGEQIQIGGHETYISVCRKHYFNPDINQEKKS
>NC_015678.1|WP_001117401.1|497564_497747_-|4-oxalocrotonate-tautomerase
MPFVRIDLFEGRTLEQKKALAKEVTEAVVRNTGAPQSAVHVIINDMPEGTYFPQGEMRTK
>NC_015678.1|WP_013903555.1|495787_497506_+|dihydroxy-acid-dehydratase
MRSDMIKMGIDRAPARGLLYATGQVKSAKDMQKPFIAICNSYIDIVPGHVHLRELADVAKEAIREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSRELIADAAETVINAHWFDGVFYIPNCDKITPGMILAAMRTNVPAVFCSGGPMKGGVDMTGHQATLSSLFEAVGTYQAGDMGMDELDFLEKNACPTCGSCSGMFTANSMNCLMEVLGLALPGNGTILAVSDERRELVRQAAKQLVENIKKDIRPRDIVTKEAIDDAFALDMAMGGSTNTVLHTLAIAREAGIDYDLKDINEIAKKTPYLSKIAPSSVYTMHDVHEAGGVPAIINQLIKKGAIKGDRITVTGKTLKENVAGAEIKNEEIIHPIEHPISPVGGLSILYGNIAQDGAVIKVGGVDPSVTTFRGKAICCDSQDQALELIDNGTVKKGHVVVIRYEGPQGGPGMPEMLAPTSKIVGRGLGKDVALITDGRFSGATRGIAIGHVSPEAAEGGNIALIEDGDEIVIDLPNRTLDLLVDDATLAERRKHLKPFKSKISSGWLRRYTAFAKSANVGGTLMSDEEFEERKAERQAQEK
>NC_015678.1|WP_013903563.1|505342_506908_-|glutamine-hydrolyzing-GMP-synthase
MTNLSTDLHDVEKIIVLDYGSQYNQLISRRIREIGVFSELKSHKISADEVRAINPVGIVLSGGPNSVYEEGSFDIDPEIFELGIPILGICYGMQLLTHKLGGKVVPAGDAGNREYGQSELTLTESSALFVGTPDKQLVLMSHGDAVTEIPADFIRTGTSADCPFASIENPDKKIYGIQFHPEVRHSVHGYDILRNFALNICGAKGDWTMDNFIDMQIKKIRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGDQLICIFVDHGLLRKDEADQVMDMLGGKFGLNIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYVFDDEASKLKDVKFLAQGTLYTDVIESGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRALGTELGMPDHIVWRQPFPGPGLAIRVMGEITEEKLETVRESDAILREEIAKAGLDRDIWQYFTVNTGVRSVGVMGDGRTYDYTIAIRAITSIDGMTADFAKIPWEVLQKISVRIVNEVDHVNRIVYDITSKPPATVEWE
>NC_015678.1|WP_003016564.1|507036_507735_+|GntR-family-transcriptional-regulator
MIPAYIQIHDQIKSEIDQKIWKIGERLPSERDLAEKFQVSRMTLRQAITLLVEEGVLERRVGSGTFITSTRVQEKMRGTTSFTEIMKSQGKEPSSQVISYRKTIPSLQEVDKLGIDKTETIIRMERVRYADGIPVVYEVASIPEKFIKNFNREEVTSHFFQTLERHGYKIGKSHQTIYARLAKDKIADYLQISKGQAILGLTQVSYFEDGTAFEYVKSQYVGERFEFYLENN
>NC_015678.1|WP_013903564.1|507975_509253_+|glycosyl-transferase
MKKIKIDVVAVPLSGHLYPTLNLVKPLLDDPSMEIRVFTGPQKKAVAESLGFTVVPILEDKVEEFERAANNDKKLNLFSAYRQLSKSLDLINHVSDQLLEEWRVNRPDIVIADFITLSAGFMAEQLEIPWITTMATQFAIETPYGPPCFFGGMGVARTKKEEKIQALCRKLTRIGKYCGAFLLRKRLKRYNFKLYNQNGVETIYSPYAIFGIGMMELELKTHFPHQYAWLGPLGTSLEKAEDYPLDLSPYEDKTKVLVTCGTQLPWAKENLLEQTKQLAKEHPECHFFVTLGDGAKEFSEEEVAPNVTVVSYLPYKEYIPQMDYVIHHGGAGIFYQCIEFKKPALILPHDYDQFDYAIRGVEAGIAFQAHRNRTEEIQAGFKALLEKESWEKLERLNKLSKTYKPLDTLEFEIQRLLRRGTDGKL
>NC_015678.1|WP_013903565.1|509249_510227_+|NAD(P)-dependent-oxidoreductase
MKILVTGATGFLGKYVIEELLDHDYSIVAFGRNEMIGKALENERVQFVKGDLSSIEEVRQAFQSVDAVVHAGALSTAWGPWKAFYQANVVGTQNVLELCREYAVKRLVYVSSPSIYAAGKDQLNIKESDAPKENHLNNYIRSKLASEKLFSDYSDVPSIILRPRGLFGVGDTSILPRVLRLSRKIGIPLIRGGEQLMDMTCVENVALAIRLALEAKEAHGQVYNITNGEPKTFKYLIETTLKGLGEPIRYRKLPAGLVAGVAYSLEGVYRFFHLKAEPPLTRYTYYLLRYSQTLDIKKAQTALGYYPKMTIEEGIDNYVQHDQAH
>NC_015678.1|WP_013903566.1|510201_511029_+|MBL-fold-metallo-hydrolase
MSNMIKHIDYFPAGYCSSHSGLLFKGIPNEKMQFPAGVFLIHHREKGYILYDTGYHYEIKKKARYFWYRLATPMQMKKEDQIDYLLQERGINPAAISYVILSHLHPDHLGGAALFPNAHFVVTQEVYEVYQKPKFKDLIFKEFLPADFKDRVTCLKADQRLPAFPYRPTADLFGDGSILVSSIDGHARGQGCLYLDELKLFIGADLSWGVDLLPFTRKMRLIPSLVQDDKKAYLRGADLLETLLQDGIQVVVSHDPQDRIERILNEKNSLSENLY
>NC_015678.1|WP_013903567.1|510994_512260_+|coenzyme-F390-synthetase
MKKTVFLKTFIETRWCHRFRSKEALNRYQDKQLARYHTFITSQSPYFQTHSPESFGTMDKHFMMTHFNELNTLGVDRDQALEMAIRGEQTRDFTEMNGEVAVGLSSGTSGHRGVFVTTEKERSMWAAAILAKMLPKGNLVGHRIAFFLRADNELYQTINSGLIRLEYFDIFKDSKEHLERLIDYQPTIVVAPASTLIELANYVSNQQLAIQPVKVVSVAEILEDRDAQTIAKTFQLDKVDQVYQATEGFLACTCSEGNLHLNEDILYVEKEYLDDSRFYPIITDFKRTSQPIYRYRLNDILVEEKSPCPCGSVFTRIAKIEGRSDDIFYFKKEDGSSQMIYPDFIRRCILFVENIQDYQVTQLADGSITIALSHRTESMEQAIFAQFELLAQQKQFILPSIQFIDYQWDPTRKLKRVQRLQ
>NC_015678.1|WP_013903568.1|512272_513217_+|ketoacyl-ACP-synthase-III
MTTVKRHLQIKGYGTALPDHTVTFKDQTRYRVKEGEETQIDLAARAIEAALNHAGLEMADIDCLVSASAVGVQPIPCTAALIHERVAKGLTIPAMDINTTCTSFISALSTVSYLIEGGEYQRVLIVSSEVGSLGLNPKQKESFELFSDGATAFIFEATKEDKGIIASMQRTWSEGAHDTEIRGGLTAYHPKLYSEATKTDFMFDMKGKKILLLSARVIPEMFQEFQEKSGISKDAVDYIIPHQASRALPLVMDKLGVGKDKYLNIVSDYGNMVSVAVPFGLAYALDHGYVKEGDTIFLMGTAAGMTVNMLALKL
>NC_015678.1|WP_013903569.1|513288_513630_+|putative-DNA-binding-protein
MKGMEIEKTNRMNALFEFYAALLTDKQMNYIELYYADDYSLAEIAEEFGVSRQAVYDNIKRTEKILEDYEMKLHMYSDYIVRSQILDQISEKYPEDPFLQEQISVLSSIDNRD
>NC_015678.1|WP_013903570.1|513661_515233_+|signal-recognition-particle-protein
MAFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKRVRERAVGHEVIETLNPAQQIVKIVDEELTAILGSETAEIIKSPKIPTIIMMVGLQGAGKTTFAGKLANKLVKEEKARPLMIAADIYRPAAIDQLKTLGQQINVPVFSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGELRDVKALVEPNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSGRILGMGDMLTLIEKASQEYDEKRSLELAEKMRENTFDFNDFIDQLDQVQNMGPMEDLLKMLPGMANNPAMKNLKVDEREIARKRAIVSSMTPAERENPDLLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKQMMQGVLSGDMNKMMKQMGLNPNNMPKNMPGGMPDMSALEGMMGQGGMPDLSALGGGAGMPDMSQMFGGGLKGKAGEFMMKRAMNKMAKQMRKNKKKRK
>NC_015678.1|WP_013903571.1|515299_516067_+|alpha/beta-hydrolase
MLKKLFQQLIRFFARLFSSHRKPFEFPKGSKKPPIRPIIFVPGSSASIQRFNGTIRMLHRSSRKKQSLLKIKVNKDDSIEMEGRLNTKEPNPMIVIGFENNRDGYSNIKQQIESLKIALTYLLDHYHFTEFKAVGHSNGGLVLTGLLESGFLEKKKVTVSKLAIIGSPYQFNQEMYEDFQTWKHRLGKEVEVLNFVGSFAGKSDGIVPLSSAQAAKSIFDNQTYTEVNLNGRKAHHSALPTNPDLVKQLSLFLNL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015678_3	3.14\|408309\|35\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	408309-408343	35	MK448744	Streptococcus phage Javan377, complete genome	35948-35982	4	0.886
NC_015678_3	3.14\|408309\|35\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	408309-408343	35	MK448745	Streptococcus phage Javan381, complete genome	35948-35982	4	0.886
NC_015678_3	3.14\|408309\|35\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	408309-408343	35	MK448923	Streptococcus phage Javan380, complete genome	35948-35982	4	0.886
NC_015678_3	3.2\|407514\|37\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	407514-407550	37	MK448914	Streptococcus phage Javan348, complete genome	12182-12218	7	0.811
NC_015678_3	3.3\|407583\|36\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	407583-407618	36	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2527375-2527410	7	0.806
NC_015678_3	3.2\|407514\|37\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	407514-407550	37	NZ_CP045385	Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence	746120-746156	8	0.784
NC_015678_3	3.2\|407514\|37\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	407514-407550	37	MT900487	Streptococcus phage 23TH, complete genome	12688-12724	8	0.784
NC_015678_1	1.1\|214806\|31\|NC_015678\|CRISPRCasFinder	214806-214836	31	NZ_CP039223	Piscirickettsia salmonis strain NVI 5692 plasmid unnamed4, complete sequence	13973-14003	9	0.71
NC_015678_1	1.1\|214806\|31\|NC_015678\|CRISPRCasFinder	214806-214836	31	NZ_CP039230	Piscirickettsia salmonis strain SR1 plasmid unnamed3, complete sequence	54181-54211	9	0.71
NC_015678_1	1.1\|214806\|31\|NC_015678\|CRISPRCasFinder	214806-214836	31	NZ_CP039238	Piscirickettsia salmonis strain BI1 plasmid unnamed4, complete sequence	51934-51964	9	0.71
NC_015678_1	1.1\|214806\|31\|NC_015678\|CRISPRCasFinder	214806-214836	31	NZ_CP039243	Piscirickettsia salmonis strain MR5 plasmid unnamed3, complete sequence	53224-53254	9	0.71
NC_015678_3	3.2\|407514\|37\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	407514-407550	37	MK448764	Streptococcus phage Javan457, complete genome	9876-9912	9	0.757
NC_015678_3	3.10\|408045\|34\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	408045-408078	34	MT774399	CrAssphage cr109_1, complete genome	88704-88737	10	0.706
NC_015678_3	3.10\|408045\|34\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	408045-408078	34	MT774398	CrAssphage cr60_1, complete genome	2153-2186	10	0.706
NC_015678_3	3.10\|408045\|34\|NC_015678\|PILER-CR,CRISPRCasFinder,CRT	408045-408078	34	MT774397	CrAssphage cr56_1, complete genome	17730-17763	10	0.706

1. spacer 3.14|408309|35|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MK448744 (Streptococcus phage Javan377, complete genome) position: , mismatch: 4, identity: 0.886

tttggattatggacaaggataccagaaattatcgg	CRISPR spacer
tttggattatggacaaggatgtcagaaattatcaa	Protospacer
********************..***********..

2. spacer 3.14|408309|35|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MK448745 (Streptococcus phage Javan381, complete genome) position: , mismatch: 4, identity: 0.886

tttggattatggacaaggataccagaaattatcgg	CRISPR spacer
tttggattatggacaaggatgtcagaaattatcaa	Protospacer
********************..***********..

3. spacer 3.14|408309|35|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MK448923 (Streptococcus phage Javan380, complete genome) position: , mismatch: 4, identity: 0.886

tttggattatggacaaggataccagaaattatcgg	CRISPR spacer
tttggattatggacaaggatgtcagaaattatcaa	Protospacer
********************..***********..

4. spacer 3.2|407514|37|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MK448914 (Streptococcus phage Javan348, complete genome) position: , mismatch: 7, identity: 0.811

cattcacgtagatattccttcattgcctgaatgtcgt	CRISPR spacer
cactctttgagataatctttcattgcctgaatgtcgt	Protospacer
**.** .  ***** **.*******************

5. spacer 3.3|407583|36|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.806

tggttcgccttttgtatttatgatcgttctcatcat	CRISPR spacer
tggttcgccttttgtatttatgttagttgtgttgtt	Protospacer
********************** * *** *  *  *

6. spacer 3.2|407514|37|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 8, identity: 0.784

cattcacgt--agatattccttcattgcctgaatgtcgt	CRISPR spacer
--ttgatgtccggatcatccttcattgcctgaatgtcgg	Protospacer
  ** *.**  .***  *********************

7. spacer 3.2|407514|37|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MT900487 (Streptococcus phage 23TH, complete genome) position: , mismatch: 8, identity: 0.784

cattcacgtagatattccttcattgcctgaatgtcgt	CRISPR spacer
cactctttgagataatctttcattgcctgaatgtcat	Protospacer
**.** .  ***** **.*****************.*

8. spacer 1.1|214806|31|NC_015678|CRISPRCasFinder matches to NZ_CP039223 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

gcaggaagaaggtcacgtgggagaagctcct	CRISPR spacer
ataaaaagaaggtcacttggaagaagcttgc	Protospacer
..*..*********** ***.*******. .

9. spacer 1.1|214806|31|NC_015678|CRISPRCasFinder matches to NZ_CP039230 (Piscirickettsia salmonis strain SR1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

gcaggaagaaggtcacgtgggagaagctcct	CRISPR spacer
ataaaaagaaggtcacttggaagaagcttgc	Protospacer
..*..*********** ***.*******. .

10. spacer 1.1|214806|31|NC_015678|CRISPRCasFinder matches to NZ_CP039238 (Piscirickettsia salmonis strain BI1 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

gcaggaagaaggtcacgtgggagaagctcct	CRISPR spacer
ataaaaagaaggtcacttggaagaagcttgc	Protospacer
..*..*********** ***.*******. .

11. spacer 1.1|214806|31|NC_015678|CRISPRCasFinder matches to NZ_CP039243 (Piscirickettsia salmonis strain MR5 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

gcaggaagaaggtcacgtgggagaagctcct	CRISPR spacer
ataaaaagaaggtcacttggaagaagcttgc	Protospacer
..*..*********** ***.*******. .

12. spacer 3.2|407514|37|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MK448764 (Streptococcus phage Javan457, complete genome) position: , mismatch: 9, identity: 0.757

cattcacgtagatattccttcattgcctgaatgtcgt	CRISPR spacer
catgatgagagatagtctttcattgcctgaatgtcat	Protospacer
***    . ***** **.*****************.*

13. spacer 3.10|408045|34|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MT774399 (CrAssphage cr109_1, complete genome) position: , mismatch: 10, identity: 0.706

tgatgattataaatatcttgcagaagaaactaaa	CRISPR spacer
cataaatttgaaatatcttgcagaagaaatcaat	Protospacer
..  .***  *******************..**

14. spacer 3.10|408045|34|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MT774398 (CrAssphage cr60_1, complete genome) position: , mismatch: 10, identity: 0.706

tgatgattataaatatcttgcagaagaaactaaa	CRISPR spacer
cataaatttgaaatatcttgcagaagaaatcaat	Protospacer
..  .***  *******************..**

15. spacer 3.10|408045|34|NC_015678|PILER-CR,CRISPRCasFinder,CRT matches to MT774397 (CrAssphage cr56_1, complete genome) position: , mismatch: 10, identity: 0.706

tgatgattataaatatcttgcagaagaaactaaa	CRISPR spacer
cataaatttgaaatatcttgcagaagaaatcaat	Protospacer
..  .***  *******************..**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30073 : 35259

Streptococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009732369.1\|30073_30400_-	hypothetical protein	E4ZFJ0	Streptococcus_phage	8.1e-18	51.2
WP_013903193.1\|30380_30752_-	hypothetical protein	M1PLN9	Streptococcus_phage	3.5e-17	44.6
WP_013903194.1\|30748_32161_-	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	8.0e-179	66.5
WP_013903195.1\|32163_32841_-	helix-turn-helix transcriptional regulator	A0A1B0RXB1	Streptococcus_phage	1.3e-54	48.7
WP_003014342.1\|33000_33993_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	4.3e-54	39.8
WP_041818095.1\|34241_34781_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_013903198.1\|34770_35259_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.8e-13	31.8

DBSCAN-SWA_2

245500 : 254545

Streptococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041818140.1\|245500_246391_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	31.4
WP_013903341.1\|246387_247365_+	YvcK family protein	A1IMD5	Streptococcus_phage	2.1e-149	78.8
WP_013903342.1\|247361_248279_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.6e-101	67.0
WP_013903343.1\|248301_249270_-	NAD(P)/FAD-dependent oxidoreductase	Q9JRK7	Streptococcus_phage	2.4e-49	74.2
WP_000048054.1\|249450_249627_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013903345.1\|249727_250108_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_041818143.1\|250322_252101_+	DNA primase	A0A1S5RFR1	Helicobacter_phage	2.2e-48	31.8
WP_013903347.1\|252103_253213_+	RNA polymerase sigma factor RpoD	M4SMP8	Cyanophage	1.6e-36	34.8
WP_004220168.1\|253337_253667_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_013903348.1\|253837_254545_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-16	24.9

DBSCAN-SWA_3

983378 : 999144

Streptococcus_phage(64.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041818336.1\|983378_985739_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.1e-84	49.2
WP_041818338.1\|985840_986383_-	hypothetical protein	NA	NA	NA	NA
WP_013903948.1\|986422_986899_-	hypothetical protein	NA	NA	NA	NA
WP_013903949.1\|987592_988513_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA
WP_013903950.1\|988687_989533_+	peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	1.1e-18	36.4
WP_013903952.1\|989982_991524_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.0e-53	27.9
WP_013903953.1\|991608_991962_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.7e-33	57.3
WP_013903954.1\|991967_992459_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.8e-35	50.0
WP_003008260.1\|992442_993024_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	3.5e-56	57.2
WP_013903955.1\|993041_993899_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.5e-111	72.5
WP_003005416.1\|993901_994222_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	7.9e-34	70.8
WP_013903956.1\|994231_995125_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	1.1e-77	51.7
WP_013903957.1\|995121_995760_-	dTMP kinase	M1PSC7	Streptococcus_phage	5.7e-76	66.7
WP_013903958.1\|995909_996797_+	YitT family protein	M1Q1P6	Streptococcus_phage	2.7e-84	51.9
WP_041818341.1\|996838_997495_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	4.4e-87	76.1
WP_003005434.1\|997669_998380_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-17	28.1
WP_003005595.1\|998379_999144_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-16	25.7

DBSCAN-SWA_4

1039108 : 1045484

Streptococcus_phage(57.14%)

integrase

attL 1032439:1032454|attR 1044532:1044547

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1032439:1032454	attL	NA	NA	NA	NA
WP_013903992.1\|1039108_1039384_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	6.0e-30	71.6
WP_013903993.1\|1039376_1039718_-	hypothetical protein	NA	NA	NA	NA
WP_013903994.1\|1039714_1039930_-	hypothetical protein	NA	NA	NA	NA
WP_013903995.1\|1039931_1040132_-	hypothetical protein	NA	NA	NA	NA
WP_013903996.1\|1040398_1041025_-	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	4.9e-11	27.4
WP_000794674.1\|1041043_1041238_-	helix-turn-helix transcriptional regulator	A0A1X9I5U5	Streptococcus_phage	5.9e-16	68.3
WP_013903997.1\|1041454_1041982_+	helix-turn-helix domain-containing protein	A0A1X9I723	Streptococcus_phage	2.1e-15	69.8
WP_013903998.1\|1042026_1043016_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	4.0e-76	46.5
WP_013903999.1\|1043359_1044526_+\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	1.0e-155	69.1
WP_013904000.1\|1044671_1045484_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.2e-11	27.6
1044532:1044547	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015678

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection